Guide to the Human Genome
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Name: APOBEC4 Sequence: fasta or formatted (367aa) NCBI GI: 44888831
Description:

apolipoprotein B

Referenced in:

RNA Editing and Other RNA Modifications

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             5.2         19           1
 C cysteine            1.9          7           2
 D aspartate           2.7         10           1
 E glutamate           5.7         21           2
 F phenylalanine       5.2         19           2
 G glycine             5.7         21           2
 H histidine           3.8         14           1
 I isoleucine          6.0         22           2
 K lysine              4.9         18           5
 L leucine             9.0         33           2
 M methionine          2.7         10           1
 N asparagine          6.3         23           2
 P proline             7.6         28           2
 Q glutamine           4.1         15           1
 R arginine            4.1         15           1
 S serine              9.0         33           2
 T threonine           5.4         20           2
 V valine              4.6         17           2
 W tryptophan          1.1          4           1
 Y tyrosine            4.9         18           2
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   apolipoprotein B 
C2orf16               0.011   hypothetical protein LOC84226 
APOBEC3F              0.009   apolipoprotein B mRNA editing enzyme, catalytic poly...
SEC24C                0.009   SEC24-related protein C 
SEC24C                0.009   SEC24-related protein C 
APOBEC3G              0.009   apolipoprotein B mRNA editing enzyme, catalytic poly...
APOBEC3B              0.009   apolipoprotein B mRNA editing enzyme, catalytic poly...
TOM1L1                0.008   target of myb1-like 1 
APOBEC1               0.008   apolipoprotein B mRNA editing enzyme 
RICH2                 0.008   Rho GTPase-activating protein RICH2 
MPEG1                 0.007   macrophage expressed gene 1 
C20orf132             0.005   hypothetical protein LOC140699 isoform 3 
KIAA2018              0.004   hypothetical protein LOC205717 
SATB2                 0.004   SATB homeobox 2 
SUPT6H                0.004   suppressor of Ty 6 homolog 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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