Search of human proteins with 228008295

Search of human proteins with 228008295

BLASTP 2.2.11 [Jun-05-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|228008295 synaptotagmin binding, cytoplasmic RNA interacting
protein isoform 4 [Homo sapiens]
         (588 letters)

Database: hs.faa 
           37,866 sequences; 18,247,518 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|228008295 synaptotagmin binding, cytoplasmic RNA interacting ...  1216   0.0  
gi|228008291 synaptotagmin binding, cytoplasmic RNA interacting ...  1198   0.0  
gi|228008398 synaptotagmin binding, cytoplasmic RNA interacting ...  1056   0.0  
gi|228008293 synaptotagmin binding, cytoplasmic RNA interacting ...  1043   0.0  
gi|228008400 synaptotagmin binding, cytoplasmic RNA interacting ...  1038   0.0  
gi|5031755 heterogeneous nuclear ribonucleoprotein R isoform 2 [...   971   0.0  
gi|156151394 heterogeneous nuclear ribonucleoprotein R isoform 1...   966   0.0  
gi|228008396 synaptotagmin binding, cytoplasmic RNA interacting ...   847   0.0  
gi|156151392 heterogeneous nuclear ribonucleoprotein R isoform 4...   837   0.0  
gi|156151396 heterogeneous nuclear ribonucleoprotein R isoform 3...   831   0.0  
gi|148833513 RNA binding motif protein 47 isoform a [Homo sapiens]    300   2e-81
gi|148833511 RNA binding motif protein 47 isoform b [Homo sapiens]    288   1e-77
gi|20357575 apobec-1 complementation factor isoform 2 [Homo sapi...   285   1e-76
gi|20357572 apobec-1 complementation factor isoform 1 [Homo sapi...   285   1e-76
gi|21450675 RNA binding motif protein 46 [Homo sapiens]               282   5e-76
gi|20357578 apobec-1 complementation factor isoform 3 [Homo sapi...   268   1e-71
gi|34740339 dead end homolog 1 [Homo sapiens]                         123   4e-28
gi|168229150 poly(A) binding protein, cytoplasmic 4-like [Homo s...    91   3e-18
gi|208431836 poly A binding protein, cytoplasmic 4 isoform 3 [Ho...    83   8e-16
gi|4504715 poly A binding protein, cytoplasmic 4 isoform 2 [Homo...    83   8e-16
gi|208431833 poly A binding protein, cytoplasmic 4 isoform 1 [Ho...    83   8e-16
gi|24762232 bruno-like 5, RNA binding protein isoform 1 [Homo sa...    81   3e-15
gi|187761303 bruno-like 4, RNA binding protein isoform 4 [Homo s...    77   6e-14
gi|14110417 heterogeneous nuclear ribonucleoprotein D isoform b ...    74   3e-13
gi|71164894 trinucleotide repeat containing 4 [Homo sapiens]           74   3e-13
gi|14110420 heterogeneous nuclear ribonucleoprotein D isoform a ...    74   5e-13
gi|187761301 bruno-like 4, RNA binding protein isoform 3 [Homo s...    73   6e-13
gi|187761299 bruno-like 4, RNA binding protein isoform 2 [Homo s...    73   8e-13
gi|13123778 bruno-like 4, RNA binding protein isoform 1 [Homo sa...    73   8e-13
gi|14043070 heterogeneous nuclear ribonucleoprotein A1 isoform b...    72   1e-12

>gi|228008295 synaptotagmin binding, cytoplasmic RNA interacting
           protein isoform 4 [Homo sapiens]
          Length = 588

 Score = 1216 bits (3146), Expect = 0.0
 Identities = 588/588 (100%), Positives = 588/588 (100%)

Query: 1   MATEHVNGNGTEEPMDTTSAVIHSENFQTLLDAGLPQKVAEKLDEIYVAGLVAHSDLDER 60
           MATEHVNGNGTEEPMDTTSAVIHSENFQTLLDAGLPQKVAEKLDEIYVAGLVAHSDLDER
Sbjct: 1   MATEHVNGNGTEEPMDTTSAVIHSENFQTLLDAGLPQKVAEKLDEIYVAGLVAHSDLDER 60

Query: 61  AIEALKEFNEDGALAVLQQFKDSDLSHVQNKSAFLCGVMKTYRQREKQGTKVADSSKGPD 120
           AIEALKEFNEDGALAVLQQFKDSDLSHVQNKSAFLCGVMKTYRQREKQGTKVADSSKGPD
Sbjct: 61  AIEALKEFNEDGALAVLQQFKDSDLSHVQNKSAFLCGVMKTYRQREKQGTKVADSSKGPD 120

Query: 121 EAKIKALLERTGYTLDVTTGQRKYGGPPPDSVYSGQQPSVGTEIFVGKIPRDLFEDELVP 180
           EAKIKALLERTGYTLDVTTGQRKYGGPPPDSVYSGQQPSVGTEIFVGKIPRDLFEDELVP
Sbjct: 121 EAKIKALLERTGYTLDVTTGQRKYGGPPPDSVYSGQQPSVGTEIFVGKIPRDLFEDELVP 180

Query: 181 LFEKAGPIWDLRLMMDPLTGLNRGYAFVTFCTKEAAQEAVKLYNNHEIRSGKHIGVCISV 240
           LFEKAGPIWDLRLMMDPLTGLNRGYAFVTFCTKEAAQEAVKLYNNHEIRSGKHIGVCISV
Sbjct: 181 LFEKAGPIWDLRLMMDPLTGLNRGYAFVTFCTKEAAQEAVKLYNNHEIRSGKHIGVCISV 240

Query: 241 ANNRLFVGSIPKSKTKEQILEEFSKVTEGLTDVILYHQPDDKKKNRGFCFLEYEDHKTAA 300
           ANNRLFVGSIPKSKTKEQILEEFSKVTEGLTDVILYHQPDDKKKNRGFCFLEYEDHKTAA
Sbjct: 241 ANNRLFVGSIPKSKTKEQILEEFSKVTEGLTDVILYHQPDDKKKNRGFCFLEYEDHKTAA 300

Query: 301 QVKVLFVRNLANTVTEEILEKAFSQFGKLERVKKLKDYAFIHFDERDGAVKAMEEMNGKD 360
           QVKVLFVRNLANTVTEEILEKAFSQFGKLERVKKLKDYAFIHFDERDGAVKAMEEMNGKD
Sbjct: 301 QVKVLFVRNLANTVTEEILEKAFSQFGKLERVKKLKDYAFIHFDERDGAVKAMEEMNGKD 360

Query: 361 LEGENIEIVFAKPPDQKRKERKAQRQAAKNQMYDDYYYYGPPHMPPPTRGRGRGGRGGYG 420
           LEGENIEIVFAKPPDQKRKERKAQRQAAKNQMYDDYYYYGPPHMPPPTRGRGRGGRGGYG
Sbjct: 361 LEGENIEIVFAKPPDQKRKERKAQRQAAKNQMYDDYYYYGPPHMPPPTRGRGRGGRGGYG 420

Query: 421 YPPDYYGYEDYYDYYGYDYHNYRGGYEDPYYGYEDFQVGARGRGGRGARGAAPSRGRGAA 480
           YPPDYYGYEDYYDYYGYDYHNYRGGYEDPYYGYEDFQVGARGRGGRGARGAAPSRGRGAA
Sbjct: 421 YPPDYYGYEDYYDYYGYDYHNYRGGYEDPYYGYEDFQVGARGRGGRGARGAAPSRGRGAA 480

Query: 481 PPRGRAGYSQRGGPGSARGVRGARGGAQQQRGRGVRGARGGRGGNVGGKRKADGYNQPDS 540
           PPRGRAGYSQRGGPGSARGVRGARGGAQQQRGRGVRGARGGRGGNVGGKRKADGYNQPDS
Sbjct: 481 PPRGRAGYSQRGGPGSARGVRGARGGAQQQRGRGVRGARGGRGGNVGGKRKADGYNQPDS 540

Query: 541 KRRQTNNQNWGSQPIAQQPLQGGDHSGNYGYKSENQEFYQDTFGQQWK 588
           KRRQTNNQNWGSQPIAQQPLQGGDHSGNYGYKSENQEFYQDTFGQQWK
Sbjct: 541 KRRQTNNQNWGSQPIAQQPLQGGDHSGNYGYKSENQEFYQDTFGQQWK 588


>gi|228008291 synaptotagmin binding, cytoplasmic RNA interacting
           protein isoform 1 [Homo sapiens]
          Length = 623

 Score = 1198 bits (3100), Expect = 0.0
 Identities = 588/623 (94%), Positives = 588/623 (94%), Gaps = 35/623 (5%)

Query: 1   MATEHVNGNGTEEPMDTTSAVIHSENFQTLLDAGLPQKVAEKLDEIYVAGLVAHSDLDER 60
           MATEHVNGNGTEEPMDTTSAVIHSENFQTLLDAGLPQKVAEKLDEIYVAGLVAHSDLDER
Sbjct: 1   MATEHVNGNGTEEPMDTTSAVIHSENFQTLLDAGLPQKVAEKLDEIYVAGLVAHSDLDER 60

Query: 61  AIEALKEFNEDGALAVLQQFKDSDLSHVQNKSAFLCGVMKTYRQREKQGTKVADSSKGPD 120
           AIEALKEFNEDGALAVLQQFKDSDLSHVQNKSAFLCGVMKTYRQREKQGTKVADSSKGPD
Sbjct: 61  AIEALKEFNEDGALAVLQQFKDSDLSHVQNKSAFLCGVMKTYRQREKQGTKVADSSKGPD 120

Query: 121 EAKIKALLERTGYTLDVTTGQRKYGGPPPDSVYSGQQPSVGTEIFVGKIPRDLFEDELVP 180
           EAKIKALLERTGYTLDVTTGQRKYGGPPPDSVYSGQQPSVGTEIFVGKIPRDLFEDELVP
Sbjct: 121 EAKIKALLERTGYTLDVTTGQRKYGGPPPDSVYSGQQPSVGTEIFVGKIPRDLFEDELVP 180

Query: 181 LFEKAGPIWDLRLMMDPLTGLNRGYAFVTFCTKEAAQEAVKLYNNHEIRSGKHIGVCISV 240
           LFEKAGPIWDLRLMMDPLTGLNRGYAFVTFCTKEAAQEAVKLYNNHEIRSGKHIGVCISV
Sbjct: 181 LFEKAGPIWDLRLMMDPLTGLNRGYAFVTFCTKEAAQEAVKLYNNHEIRSGKHIGVCISV 240

Query: 241 ANNRLFVGSIPKSKTKEQILEEFSKVTEGLTDVILYHQPDDKKKNRGFCFLEYEDHKTAA 300
           ANNRLFVGSIPKSKTKEQILEEFSKVTEGLTDVILYHQPDDKKKNRGFCFLEYEDHKTAA
Sbjct: 241 ANNRLFVGSIPKSKTKEQILEEFSKVTEGLTDVILYHQPDDKKKNRGFCFLEYEDHKTAA 300

Query: 301 Q-----------------------------------VKVLFVRNLANTVTEEILEKAFSQ 325
           Q                                   VKVLFVRNLANTVTEEILEKAFSQ
Sbjct: 301 QARRRLMSGKVKVWGNVGTVEWADPIEDPDPEVMAKVKVLFVRNLANTVTEEILEKAFSQ 360

Query: 326 FGKLERVKKLKDYAFIHFDERDGAVKAMEEMNGKDLEGENIEIVFAKPPDQKRKERKAQR 385
           FGKLERVKKLKDYAFIHFDERDGAVKAMEEMNGKDLEGENIEIVFAKPPDQKRKERKAQR
Sbjct: 361 FGKLERVKKLKDYAFIHFDERDGAVKAMEEMNGKDLEGENIEIVFAKPPDQKRKERKAQR 420

Query: 386 QAAKNQMYDDYYYYGPPHMPPPTRGRGRGGRGGYGYPPDYYGYEDYYDYYGYDYHNYRGG 445
           QAAKNQMYDDYYYYGPPHMPPPTRGRGRGGRGGYGYPPDYYGYEDYYDYYGYDYHNYRGG
Sbjct: 421 QAAKNQMYDDYYYYGPPHMPPPTRGRGRGGRGGYGYPPDYYGYEDYYDYYGYDYHNYRGG 480

Query: 446 YEDPYYGYEDFQVGARGRGGRGARGAAPSRGRGAAPPRGRAGYSQRGGPGSARGVRGARG 505
           YEDPYYGYEDFQVGARGRGGRGARGAAPSRGRGAAPPRGRAGYSQRGGPGSARGVRGARG
Sbjct: 481 YEDPYYGYEDFQVGARGRGGRGARGAAPSRGRGAAPPRGRAGYSQRGGPGSARGVRGARG 540

Query: 506 GAQQQRGRGVRGARGGRGGNVGGKRKADGYNQPDSKRRQTNNQNWGSQPIAQQPLQGGDH 565
           GAQQQRGRGVRGARGGRGGNVGGKRKADGYNQPDSKRRQTNNQNWGSQPIAQQPLQGGDH
Sbjct: 541 GAQQQRGRGVRGARGGRGGNVGGKRKADGYNQPDSKRRQTNNQNWGSQPIAQQPLQGGDH 600

Query: 566 SGNYGYKSENQEFYQDTFGQQWK 588
           SGNYGYKSENQEFYQDTFGQQWK
Sbjct: 601 SGNYGYKSENQEFYQDTFGQQWK 623


>gi|228008398 synaptotagmin binding, cytoplasmic RNA interacting
           protein isoform 3 [Homo sapiens]
          Length = 527

 Score = 1056 bits (2731), Expect = 0.0
 Identities = 514/514 (100%), Positives = 514/514 (100%)

Query: 1   MATEHVNGNGTEEPMDTTSAVIHSENFQTLLDAGLPQKVAEKLDEIYVAGLVAHSDLDER 60
           MATEHVNGNGTEEPMDTTSAVIHSENFQTLLDAGLPQKVAEKLDEIYVAGLVAHSDLDER
Sbjct: 1   MATEHVNGNGTEEPMDTTSAVIHSENFQTLLDAGLPQKVAEKLDEIYVAGLVAHSDLDER 60

Query: 61  AIEALKEFNEDGALAVLQQFKDSDLSHVQNKSAFLCGVMKTYRQREKQGTKVADSSKGPD 120
           AIEALKEFNEDGALAVLQQFKDSDLSHVQNKSAFLCGVMKTYRQREKQGTKVADSSKGPD
Sbjct: 61  AIEALKEFNEDGALAVLQQFKDSDLSHVQNKSAFLCGVMKTYRQREKQGTKVADSSKGPD 120

Query: 121 EAKIKALLERTGYTLDVTTGQRKYGGPPPDSVYSGQQPSVGTEIFVGKIPRDLFEDELVP 180
           EAKIKALLERTGYTLDVTTGQRKYGGPPPDSVYSGQQPSVGTEIFVGKIPRDLFEDELVP
Sbjct: 121 EAKIKALLERTGYTLDVTTGQRKYGGPPPDSVYSGQQPSVGTEIFVGKIPRDLFEDELVP 180

Query: 181 LFEKAGPIWDLRLMMDPLTGLNRGYAFVTFCTKEAAQEAVKLYNNHEIRSGKHIGVCISV 240
           LFEKAGPIWDLRLMMDPLTGLNRGYAFVTFCTKEAAQEAVKLYNNHEIRSGKHIGVCISV
Sbjct: 181 LFEKAGPIWDLRLMMDPLTGLNRGYAFVTFCTKEAAQEAVKLYNNHEIRSGKHIGVCISV 240

Query: 241 ANNRLFVGSIPKSKTKEQILEEFSKVTEGLTDVILYHQPDDKKKNRGFCFLEYEDHKTAA 300
           ANNRLFVGSIPKSKTKEQILEEFSKVTEGLTDVILYHQPDDKKKNRGFCFLEYEDHKTAA
Sbjct: 241 ANNRLFVGSIPKSKTKEQILEEFSKVTEGLTDVILYHQPDDKKKNRGFCFLEYEDHKTAA 300

Query: 301 QVKVLFVRNLANTVTEEILEKAFSQFGKLERVKKLKDYAFIHFDERDGAVKAMEEMNGKD 360
           QVKVLFVRNLANTVTEEILEKAFSQFGKLERVKKLKDYAFIHFDERDGAVKAMEEMNGKD
Sbjct: 301 QVKVLFVRNLANTVTEEILEKAFSQFGKLERVKKLKDYAFIHFDERDGAVKAMEEMNGKD 360

Query: 361 LEGENIEIVFAKPPDQKRKERKAQRQAAKNQMYDDYYYYGPPHMPPPTRGRGRGGRGGYG 420
           LEGENIEIVFAKPPDQKRKERKAQRQAAKNQMYDDYYYYGPPHMPPPTRGRGRGGRGGYG
Sbjct: 361 LEGENIEIVFAKPPDQKRKERKAQRQAAKNQMYDDYYYYGPPHMPPPTRGRGRGGRGGYG 420

Query: 421 YPPDYYGYEDYYDYYGYDYHNYRGGYEDPYYGYEDFQVGARGRGGRGARGAAPSRGRGAA 480
           YPPDYYGYEDYYDYYGYDYHNYRGGYEDPYYGYEDFQVGARGRGGRGARGAAPSRGRGAA
Sbjct: 421 YPPDYYGYEDYYDYYGYDYHNYRGGYEDPYYGYEDFQVGARGRGGRGARGAAPSRGRGAA 480

Query: 481 PPRGRAGYSQRGGPGSARGVRGARGGAQQQRGRG 514
           PPRGRAGYSQRGGPGSARGVRGARGGAQQQRGRG
Sbjct: 481 PPRGRAGYSQRGGPGSARGVRGARGGAQQQRGRG 514


>gi|228008293 synaptotagmin binding, cytoplasmic RNA interacting
           protein isoform 5 [Homo sapiens]
          Length = 561

 Score = 1043 bits (2696), Expect = 0.0
 Identities = 516/556 (92%), Positives = 517/556 (92%), Gaps = 35/556 (6%)

Query: 1   MATEHVNGNGTEEPMDTTSAVIHSENFQTLLDAGLPQKVAEKLDEIYVAGLVAHSDLDER 60
           MATEHVNGNGTEEPMDTTSAVIHSENFQTLLDAGLPQKVAEKLDEIYVAGLVAHSDLDER
Sbjct: 1   MATEHVNGNGTEEPMDTTSAVIHSENFQTLLDAGLPQKVAEKLDEIYVAGLVAHSDLDER 60

Query: 61  AIEALKEFNEDGALAVLQQFKDSDLSHVQNKSAFLCGVMKTYRQREKQGTKVADSSKGPD 120
           AIEALKEFNEDGALAVLQQFKDSDLSHVQNKSAFLCGVMKTYRQREKQGTKVADSSKGPD
Sbjct: 61  AIEALKEFNEDGALAVLQQFKDSDLSHVQNKSAFLCGVMKTYRQREKQGTKVADSSKGPD 120

Query: 121 EAKIKALLERTGYTLDVTTGQRKYGGPPPDSVYSGQQPSVGTEIFVGKIPRDLFEDELVP 180
           EAKIKALLERTGYTLDVTTGQRKYGGPPPDSVYSGQQPSVGTEIFVGKIPRDLFEDELVP
Sbjct: 121 EAKIKALLERTGYTLDVTTGQRKYGGPPPDSVYSGQQPSVGTEIFVGKIPRDLFEDELVP 180

Query: 181 LFEKAGPIWDLRLMMDPLTGLNRGYAFVTFCTKEAAQEAVKLYNNHEIRSGKHIGVCISV 240
           LFEKAGPIWDLRLMMDPLTGLNRGYAFVTFCTKEAAQEAVKLYNNHEIRSGKHIGVCISV
Sbjct: 181 LFEKAGPIWDLRLMMDPLTGLNRGYAFVTFCTKEAAQEAVKLYNNHEIRSGKHIGVCISV 240

Query: 241 ANNRLFVGSIPKSKTKEQILEEFSKVTEGLTDVILYHQPDDKKKNRGFCFLEYEDHKTAA 300
           ANNRLFVGSIPKSKTKEQILEEFSKVTEGLTDVILYHQPDDKKKNRGFCFLEYEDHKTAA
Sbjct: 241 ANNRLFVGSIPKSKTKEQILEEFSKVTEGLTDVILYHQPDDKKKNRGFCFLEYEDHKTAA 300

Query: 301 Q-----------------------------------VKVLFVRNLANTVTEEILEKAFSQ 325
           Q                                   VKVLFVRNLANTVTEEILEKAFSQ
Sbjct: 301 QARRRLMSGKVKVWGNVGTVEWADPIEDPDPEVMAKVKVLFVRNLANTVTEEILEKAFSQ 360

Query: 326 FGKLERVKKLKDYAFIHFDERDGAVKAMEEMNGKDLEGENIEIVFAKPPDQKRKERKAQR 385
           FGKLERVKKLKDYAFIHFDERDGAVKAMEEMNGKDLEGENIEIVFAKPPDQKRKERKAQR
Sbjct: 361 FGKLERVKKLKDYAFIHFDERDGAVKAMEEMNGKDLEGENIEIVFAKPPDQKRKERKAQR 420

Query: 386 QAAKNQMYDDYYYYGPPHMPPPTRGRGRGGRGGYGYPPDYYGYEDYYDYYGYDYHNYRGG 445
           QAAKNQMYDDYYYYGPPHMPPPTRGRGRGGRGGYGYPPDYYGYEDYYDYYGYDYHNYRGG
Sbjct: 421 QAAKNQMYDDYYYYGPPHMPPPTRGRGRGGRGGYGYPPDYYGYEDYYDYYGYDYHNYRGG 480

Query: 446 YEDPYYGYEDFQVGARGRGGRGARGAAPSRGRGAAPPRGRAGYSQRGGPGSARGVRGARG 505
           YEDPYYGYEDFQVGARGRGGRGARGAAPSRGRGAAPPRGRAGYSQRGGPGSARGVRGARG
Sbjct: 481 YEDPYYGYEDFQVGARGRGGRGARGAAPSRGRGAAPPRGRAGYSQRGGPGSARGVRGARG 540

Query: 506 GAQQQRGRGVRGARGG 521
           GAQQQRGRG +G   G
Sbjct: 541 GAQQQRGRGGKGVEAG 556


>gi|228008400 synaptotagmin binding, cytoplasmic RNA interacting
           protein isoform 6 [Homo sapiens]
          Length = 562

 Score = 1038 bits (2685), Expect = 0.0
 Identities = 514/549 (93%), Positives = 514/549 (93%), Gaps = 35/549 (6%)

Query: 1   MATEHVNGNGTEEPMDTTSAVIHSENFQTLLDAGLPQKVAEKLDEIYVAGLVAHSDLDER 60
           MATEHVNGNGTEEPMDTTSAVIHSENFQTLLDAGLPQKVAEKLDEIYVAGLVAHSDLDER
Sbjct: 1   MATEHVNGNGTEEPMDTTSAVIHSENFQTLLDAGLPQKVAEKLDEIYVAGLVAHSDLDER 60

Query: 61  AIEALKEFNEDGALAVLQQFKDSDLSHVQNKSAFLCGVMKTYRQREKQGTKVADSSKGPD 120
           AIEALKEFNEDGALAVLQQFKDSDLSHVQNKSAFLCGVMKTYRQREKQGTKVADSSKGPD
Sbjct: 61  AIEALKEFNEDGALAVLQQFKDSDLSHVQNKSAFLCGVMKTYRQREKQGTKVADSSKGPD 120

Query: 121 EAKIKALLERTGYTLDVTTGQRKYGGPPPDSVYSGQQPSVGTEIFVGKIPRDLFEDELVP 180
           EAKIKALLERTGYTLDVTTGQRKYGGPPPDSVYSGQQPSVGTEIFVGKIPRDLFEDELVP
Sbjct: 121 EAKIKALLERTGYTLDVTTGQRKYGGPPPDSVYSGQQPSVGTEIFVGKIPRDLFEDELVP 180

Query: 181 LFEKAGPIWDLRLMMDPLTGLNRGYAFVTFCTKEAAQEAVKLYNNHEIRSGKHIGVCISV 240
           LFEKAGPIWDLRLMMDPLTGLNRGYAFVTFCTKEAAQEAVKLYNNHEIRSGKHIGVCISV
Sbjct: 181 LFEKAGPIWDLRLMMDPLTGLNRGYAFVTFCTKEAAQEAVKLYNNHEIRSGKHIGVCISV 240

Query: 241 ANNRLFVGSIPKSKTKEQILEEFSKVTEGLTDVILYHQPDDKKKNRGFCFLEYEDHKTAA 300
           ANNRLFVGSIPKSKTKEQILEEFSKVTEGLTDVILYHQPDDKKKNRGFCFLEYEDHKTAA
Sbjct: 241 ANNRLFVGSIPKSKTKEQILEEFSKVTEGLTDVILYHQPDDKKKNRGFCFLEYEDHKTAA 300

Query: 301 Q-----------------------------------VKVLFVRNLANTVTEEILEKAFSQ 325
           Q                                   VKVLFVRNLANTVTEEILEKAFSQ
Sbjct: 301 QARRRLMSGKVKVWGNVGTVEWADPIEDPDPEVMAKVKVLFVRNLANTVTEEILEKAFSQ 360

Query: 326 FGKLERVKKLKDYAFIHFDERDGAVKAMEEMNGKDLEGENIEIVFAKPPDQKRKERKAQR 385
           FGKLERVKKLKDYAFIHFDERDGAVKAMEEMNGKDLEGENIEIVFAKPPDQKRKERKAQR
Sbjct: 361 FGKLERVKKLKDYAFIHFDERDGAVKAMEEMNGKDLEGENIEIVFAKPPDQKRKERKAQR 420

Query: 386 QAAKNQMYDDYYYYGPPHMPPPTRGRGRGGRGGYGYPPDYYGYEDYYDYYGYDYHNYRGG 445
           QAAKNQMYDDYYYYGPPHMPPPTRGRGRGGRGGYGYPPDYYGYEDYYDYYGYDYHNYRGG
Sbjct: 421 QAAKNQMYDDYYYYGPPHMPPPTRGRGRGGRGGYGYPPDYYGYEDYYDYYGYDYHNYRGG 480

Query: 446 YEDPYYGYEDFQVGARGRGGRGARGAAPSRGRGAAPPRGRAGYSQRGGPGSARGVRGARG 505
           YEDPYYGYEDFQVGARGRGGRGARGAAPSRGRGAAPPRGRAGYSQRGGPGSARGVRGARG
Sbjct: 481 YEDPYYGYEDFQVGARGRGGRGARGAAPSRGRGAAPPRGRAGYSQRGGPGSARGVRGARG 540

Query: 506 GAQQQRGRG 514
           GAQQQRGRG
Sbjct: 541 GAQQQRGRG 549


>gi|5031755 heterogeneous nuclear ribonucleoprotein R isoform 2
           [Homo sapiens]
          Length = 633

 Score =  971 bits (2511), Expect = 0.0
 Identities = 488/631 (77%), Positives = 540/631 (85%), Gaps = 50/631 (7%)

Query: 6   VNGNGT-----EEPMDTTSAVIHSENFQTLLDAGLPQKVAEKLDEIYVAGLVAHSDLDER 60
           VNGN       EEPMDT+S V H+E+++TL++AGLPQKVAE+LDEI+  GLVA+ DLDER
Sbjct: 5   VNGNAVQLKEEEEPMDTSS-VTHTEHYKTLIEAGLPQKVAERLDEIFQTGLVAYVDLDER 63

Query: 61  AIEALKEFNEDGALAVLQQFKDSDLSHVQNKSAFLCGVMKTYRQREKQGTKVADSSKGPD 120
           AI+AL+EFNE+GAL+VLQQFK+SDLSHVQNKSAFLCGVMKTYRQREKQG+KV +S+KGPD
Sbjct: 64  AIDALREFNEEGALSVLQQFKESDLSHVQNKSAFLCGVMKTYRQREKQGSKVQESTKGPD 123

Query: 121 EAKIKALLERTGYTLDVTTGQRKYGGPPPDSVYSGQQPSVGTEIFVGKIPRDLFEDELVP 180
           EAKIKALLERTGYTLDVTTGQRKYGGPPPDSVYSG QP +GTE+FVGKIPRDL+EDELVP
Sbjct: 124 EAKIKALLERTGYTLDVTTGQRKYGGPPPDSVYSGVQPGIGTEVFVGKIPRDLYEDELVP 183

Query: 181 LFEKAGPIWDLRLMMDPLTGLNRGYAFVTFCTKEAAQEAVKLYNNHEIRSGKHIGVCISV 240
           LFEKAGPIWDLRLMMDPL+G NRGYAF+TFC KEAAQEAVKL +++EIR GKH+GVCISV
Sbjct: 184 LFEKAGPIWDLRLMMDPLSGQNRGYAFITFCGKEAAQEAVKLCDSYEIRPGKHLGVCISV 243

Query: 241 ANNRLFVGSIPKSKTKEQILEEFSKVTEGLTDVILYHQPDDKKKNRGFCFLEYEDHKTAA 300
           ANNRLFVGSIPK+KTKE ILEEFSKVTEGL DVILYHQPDDKKKNRGFCFLEYEDHK+AA
Sbjct: 244 ANNRLFVGSIPKNKTKENILEEFSKVTEGLVDVILYHQPDDKKKNRGFCFLEYEDHKSAA 303

Query: 301 Q-----------------------------------VKVLFVRNLANTVTEEILEKAFSQ 325
           Q                                   VKVLFVRNLA TVTEEILEK+FS+
Sbjct: 304 QARRRLMSGKVKVWGNVVTVEWADPVEEPDPEVMAKVKVLFVRNLATTVTEEILEKSFSE 363

Query: 326 FGKLERVKKLKDYAFIHFDERDGAVKAMEEMNGKDLEGENIEIVFAKPPDQKRKERKAQR 385
           FGKLERVKKLKDYAF+HF++R  AVKAM+EMNGK++EGE IEIV AKPPD+KRKER+A R
Sbjct: 364 FGKLERVKKLKDYAFVHFEDRGAAVKAMDEMNGKEIEGEEIEIVLAKPPDKKRKERQAAR 423

Query: 386 QAAKNQMYDDYYYYGPPHMPPPTRGRGR-GGRGGYGYPPDYYGYEDYY-DYYGYDYHNYR 443
           QA+++  Y+DYYY+ PP MPPP RGRGR GGRGGYGYPPDYYGYEDYY DYYGYDYH+YR
Sbjct: 424 QASRSTAYEDYYYHPPPRMPPPIRGRGRGGGRGGYGYPPDYYGYEDYYDDYYGYDYHDYR 483

Query: 444 GGYEDPYYGYED-FQVGARGRGGRGARGA-APSRGRGAAPPRGRAGYSQRGGP-GSARGV 500
           GGYEDPYYGY+D + V  RG GGRG RGA  P RGRGA PPRGRAGYSQRG P G  RG 
Sbjct: 484 GGYEDPYYGYDDGYAVRGRG-GGRGGRGAPPPPRGRGAPPPRGRAGYSQRGAPLGPPRGS 542

Query: 501 RGARGG-AQQQRGRGVRGARGGRGGNVGGKRKADGYNQPDSKRRQTNN-QNWGSQPIAQQ 558
           RG RGG AQQQRGRG RG+RG RGGNVGGKRKADGYNQPDSKRRQTNN QNWGSQPIAQQ
Sbjct: 543 RGGRGGPAQQQRGRGSRGSRGNRGGNVGGKRKADGYNQPDSKRRQTNNQQNWGSQPIAQQ 602

Query: 559 PL-QGGDHSGNYGYKSENQEFYQDTFGQQWK 588
           PL QGGD+SGNYGY ++NQEFYQDT+GQQWK
Sbjct: 603 PLQQGGDYSGNYGYNNDNQEFYQDTYGQQWK 633


>gi|156151394 heterogeneous nuclear ribonucleoprotein R isoform 1
           [Homo sapiens]
          Length = 636

 Score =  966 bits (2497), Expect = 0.0
 Identities = 488/634 (76%), Positives = 540/634 (85%), Gaps = 53/634 (8%)

Query: 6   VNGNGT-----EEPMDTTSAVIHSENFQTLLDAGLPQKVAEKLDEIYVAGLVAHSDLDER 60
           VNGN       EEPMDT+S V H+E+++TL++AGLPQKVAE+LDEI+  GLVA+ DLDER
Sbjct: 5   VNGNAVQLKEEEEPMDTSS-VTHTEHYKTLIEAGLPQKVAERLDEIFQTGLVAYVDLDER 63

Query: 61  AIEALKEFNEDGALAVLQQFKDSDLSHVQNKSAFLCGVMKTYRQREKQGTKVADSSKGPD 120
           AI+AL+EFNE+GAL+VLQQFK+SDLSHVQNKSAFLCGVMKTYRQREKQG+KV +S+KGPD
Sbjct: 64  AIDALREFNEEGALSVLQQFKESDLSHVQNKSAFLCGVMKTYRQREKQGSKVQESTKGPD 123

Query: 121 EAKIKALLERTGYTLDVTTGQRKYGGPPPDSVYSGQQPSVGTEIFVGKIPRDLFEDELVP 180
           EAKIKALLERTGYTLDVTTGQRKYGGPPPDSVYSG QP +GTE+FVGKIPRDL+EDELVP
Sbjct: 124 EAKIKALLERTGYTLDVTTGQRKYGGPPPDSVYSGVQPGIGTEVFVGKIPRDLYEDELVP 183

Query: 181 LFEKAGPIWDLRLMMDPLTGLNRGYAFVTFCTKEAAQEAVKLYNNHEIRSGKHIGVCISV 240
           LFEKAGPIWDLRLMMDPL+G NRGYAF+TFC KEAAQEAVKL +++EIR GKH+GVCISV
Sbjct: 184 LFEKAGPIWDLRLMMDPLSGQNRGYAFITFCGKEAAQEAVKLCDSYEIRPGKHLGVCISV 243

Query: 241 ANNRLFVGSIPKSKTKEQILEEFSKV---TEGLTDVILYHQPDDKKKNRGFCFLEYEDHK 297
           ANNRLFVGSIPK+KTKE ILEEFSKV   TEGL DVILYHQPDDKKKNRGFCFLEYEDHK
Sbjct: 244 ANNRLFVGSIPKNKTKENILEEFSKVTGLTEGLVDVILYHQPDDKKKNRGFCFLEYEDHK 303

Query: 298 TAAQ-----------------------------------VKVLFVRNLANTVTEEILEKA 322
           +AAQ                                   VKVLFVRNLA TVTEEILEK+
Sbjct: 304 SAAQARRRLMSGKVKVWGNVVTVEWADPVEEPDPEVMAKVKVLFVRNLATTVTEEILEKS 363

Query: 323 FSQFGKLERVKKLKDYAFIHFDERDGAVKAMEEMNGKDLEGENIEIVFAKPPDQKRKERK 382
           FS+FGKLERVKKLKDYAF+HF++R  AVKAM+EMNGK++EGE IEIV AKPPD+KRKER+
Sbjct: 364 FSEFGKLERVKKLKDYAFVHFEDRGAAVKAMDEMNGKEIEGEEIEIVLAKPPDKKRKERQ 423

Query: 383 AQRQAAKNQMYDDYYYYGPPHMPPPTRGRGR-GGRGGYGYPPDYYGYEDYY-DYYGYDYH 440
           A RQA+++  Y+DYYY+ PP MPPP RGRGR GGRGGYGYPPDYYGYEDYY DYYGYDYH
Sbjct: 424 AARQASRSTAYEDYYYHPPPRMPPPIRGRGRGGGRGGYGYPPDYYGYEDYYDDYYGYDYH 483

Query: 441 NYRGGYEDPYYGYED-FQVGARGRGGRGARGA-APSRGRGAAPPRGRAGYSQRGGP-GSA 497
           +YRGGYEDPYYGY+D + V  RG GGRG RGA  P RGRGA PPRGRAGYSQRG P G  
Sbjct: 484 DYRGGYEDPYYGYDDGYAVRGRG-GGRGGRGAPPPPRGRGAPPPRGRAGYSQRGAPLGPP 542

Query: 498 RGVRGARGG-AQQQRGRGVRGARGGRGGNVGGKRKADGYNQPDSKRRQTNN-QNWGSQPI 555
           RG RG RGG AQQQRGRG RG+RG RGGNVGGKRKADGYNQPDSKRRQTNN QNWGSQPI
Sbjct: 543 RGSRGGRGGPAQQQRGRGSRGSRGNRGGNVGGKRKADGYNQPDSKRRQTNNQQNWGSQPI 602

Query: 556 AQQPL-QGGDHSGNYGYKSENQEFYQDTFGQQWK 588
           AQQPL QGGD+SGNYGY ++NQEFYQDT+GQQWK
Sbjct: 603 AQQPLQQGGDYSGNYGYNNDNQEFYQDTYGQQWK 636


>gi|228008396 synaptotagmin binding, cytoplasmic RNA interacting
           protein isoform 2 [Homo sapiens]
          Length = 464

 Score =  847 bits (2189), Expect = 0.0
 Identities = 416/451 (92%), Positives = 416/451 (92%), Gaps = 35/451 (7%)

Query: 99  MKTYRQREKQGTKVADSSKGPDEAKIKALLERTGYTLDVTTGQRKYGGPPPDSVYSGQQP 158
           MKTYRQREKQGTKVADSSKGPDEAKIKALLERTGYTLDVTTGQRKYGGPPPDSVYSGQQP
Sbjct: 1   MKTYRQREKQGTKVADSSKGPDEAKIKALLERTGYTLDVTTGQRKYGGPPPDSVYSGQQP 60

Query: 159 SVGTEIFVGKIPRDLFEDELVPLFEKAGPIWDLRLMMDPLTGLNRGYAFVTFCTKEAAQE 218
           SVGTEIFVGKIPRDLFEDELVPLFEKAGPIWDLRLMMDPLTGLNRGYAFVTFCTKEAAQE
Sbjct: 61  SVGTEIFVGKIPRDLFEDELVPLFEKAGPIWDLRLMMDPLTGLNRGYAFVTFCTKEAAQE 120

Query: 219 AVKLYNNHEIRSGKHIGVCISVANNRLFVGSIPKSKTKEQILEEFSKVTEGLTDVILYHQ 278
           AVKLYNNHEIRSGKHIGVCISVANNRLFVGSIPKSKTKEQILEEFSKVTEGLTDVILYHQ
Sbjct: 121 AVKLYNNHEIRSGKHIGVCISVANNRLFVGSIPKSKTKEQILEEFSKVTEGLTDVILYHQ 180

Query: 279 PDDKKKNRGFCFLEYEDHKTAAQ-----------------------------------VK 303
           PDDKKKNRGFCFLEYEDHKTAAQ                                   VK
Sbjct: 181 PDDKKKNRGFCFLEYEDHKTAAQARRRLMSGKVKVWGNVGTVEWADPIEDPDPEVMAKVK 240

Query: 304 VLFVRNLANTVTEEILEKAFSQFGKLERVKKLKDYAFIHFDERDGAVKAMEEMNGKDLEG 363
           VLFVRNLANTVTEEILEKAFSQFGKLERVKKLKDYAFIHFDERDGAVKAMEEMNGKDLEG
Sbjct: 241 VLFVRNLANTVTEEILEKAFSQFGKLERVKKLKDYAFIHFDERDGAVKAMEEMNGKDLEG 300

Query: 364 ENIEIVFAKPPDQKRKERKAQRQAAKNQMYDDYYYYGPPHMPPPTRGRGRGGRGGYGYPP 423
           ENIEIVFAKPPDQKRKERKAQRQAAKNQMYDDYYYYGPPHMPPPTRGRGRGGRGGYGYPP
Sbjct: 301 ENIEIVFAKPPDQKRKERKAQRQAAKNQMYDDYYYYGPPHMPPPTRGRGRGGRGGYGYPP 360

Query: 424 DYYGYEDYYDYYGYDYHNYRGGYEDPYYGYEDFQVGARGRGGRGARGAAPSRGRGAAPPR 483
           DYYGYEDYYDYYGYDYHNYRGGYEDPYYGYEDFQVGARGRGGRGARGAAPSRGRGAAPPR
Sbjct: 361 DYYGYEDYYDYYGYDYHNYRGGYEDPYYGYEDFQVGARGRGGRGARGAAPSRGRGAAPPR 420

Query: 484 GRAGYSQRGGPGSARGVRGARGGAQQQRGRG 514
           GRAGYSQRGGPGSARGVRGARGGAQQQRGRG
Sbjct: 421 GRAGYSQRGGPGSARGVRGARGGAQQQRGRG 451


>gi|156151392 heterogeneous nuclear ribonucleoprotein R isoform 4
           [Homo sapiens]
          Length = 532

 Score =  837 bits (2161), Expect = 0.0
 Identities = 417/533 (78%), Positives = 454/533 (85%), Gaps = 44/533 (8%)

Query: 99  MKTYRQREKQGTKVADSSKGPDEAKIKALLERTGYTLDVTTGQRKYGGPPPDSVYSGQQP 158
           MKTYRQREKQG+KV +S+KGPDEAKIKALLERTGYTLDVTTGQRKYGGPPPDSVYSG QP
Sbjct: 1   MKTYRQREKQGSKVQESTKGPDEAKIKALLERTGYTLDVTTGQRKYGGPPPDSVYSGVQP 60

Query: 159 SVGTEIFVGKIPRDLFEDELVPLFEKAGPIWDLRLMMDPLTGLNRGYAFVTFCTKEAAQE 218
            +GTE+FVGKIPRDL+EDELVPLFEKAGPIWDLRLMMDPL+G NRGYAF+TFC KEAAQE
Sbjct: 61  GIGTEVFVGKIPRDLYEDELVPLFEKAGPIWDLRLMMDPLSGQNRGYAFITFCGKEAAQE 120

Query: 219 AVKLYNNHEIRSGKHIGVCISVANNRLFVGSIPKSKTKEQILEEFSKVTEGLTDVILYHQ 278
           AVKL +++EIR GKH+GVCISVANNRLFVGSIPK+KTKE ILEEFSKVTEGL DVILYHQ
Sbjct: 121 AVKLCDSYEIRPGKHLGVCISVANNRLFVGSIPKNKTKENILEEFSKVTEGLVDVILYHQ 180

Query: 279 PDDKKKNRGFCFLEYEDHKTAAQ-----------------------------------VK 303
           PDDKKKNRGFCFLEYEDHK+AAQ                                   VK
Sbjct: 181 PDDKKKNRGFCFLEYEDHKSAAQARRRLMSGKVKVWGNVVTVEWADPVEEPDPEVMAKVK 240

Query: 304 VLFVRNLANTVTEEILEKAFSQFGKLERVKKLKDYAFIHFDERDGAVKAMEEMNGKDLEG 363
           VLFVRNLA TVTEEILEK+FS+FGKLERVKKLKDYAF+HF++R  AVKAM+EMNGK++EG
Sbjct: 241 VLFVRNLATTVTEEILEKSFSEFGKLERVKKLKDYAFVHFEDRGAAVKAMDEMNGKEIEG 300

Query: 364 ENIEIVFAKPPDQKRKERKAQRQAAKNQMYDDYYYYGPPHMPPPTRGRGR-GGRGGYGYP 422
           E IEIV AKPPD+KRKER+A RQA+++  Y+DYYY+ PP MPPP RGRGR GGRGGYGYP
Sbjct: 301 EEIEIVLAKPPDKKRKERQAARQASRSTAYEDYYYHPPPRMPPPIRGRGRGGGRGGYGYP 360

Query: 423 PDYYGYEDYY-DYYGYDYHNYRGGYEDPYYGYED-FQVGARGRGGRGARGA-APSRGRGA 479
           PDYYGYEDYY DYYGYDYH+YRGGYEDPYYGY+D + V  RG GGRG RGA  P RGRGA
Sbjct: 361 PDYYGYEDYYDDYYGYDYHDYRGGYEDPYYGYDDGYAVRGRG-GGRGGRGAPPPPRGRGA 419

Query: 480 APPRGRAGYSQRGGP-GSARGVRGARGG-AQQQRGRGVRGARGGRGGNVGGKRKADGYNQ 537
            PPRGRAGYSQRG P G  RG RG RGG AQQQRGRG RG+RG RGGNVGGKRKADGYNQ
Sbjct: 420 PPPRGRAGYSQRGAPLGPPRGSRGGRGGPAQQQRGRGSRGSRGNRGGNVGGKRKADGYNQ 479

Query: 538 PDSKRRQTNN-QNWGSQPIAQQPL-QGGDHSGNYGYKSENQEFYQDTFGQQWK 588
           PDSKRRQTNN QNWGSQPIAQQPL QGGD+SGNYGY ++NQEFYQDT+GQQWK
Sbjct: 480 PDSKRRQTNNQQNWGSQPIAQQPLQQGGDYSGNYGYNNDNQEFYQDTYGQQWK 532


>gi|156151396 heterogeneous nuclear ribonucleoprotein R isoform 3
           [Homo sapiens]
          Length = 535

 Score =  831 bits (2147), Expect = 0.0
 Identities = 417/536 (77%), Positives = 454/536 (84%), Gaps = 47/536 (8%)

Query: 99  MKTYRQREKQGTKVADSSKGPDEAKIKALLERTGYTLDVTTGQRKYGGPPPDSVYSGQQP 158
           MKTYRQREKQG+KV +S+KGPDEAKIKALLERTGYTLDVTTGQRKYGGPPPDSVYSG QP
Sbjct: 1   MKTYRQREKQGSKVQESTKGPDEAKIKALLERTGYTLDVTTGQRKYGGPPPDSVYSGVQP 60

Query: 159 SVGTEIFVGKIPRDLFEDELVPLFEKAGPIWDLRLMMDPLTGLNRGYAFVTFCTKEAAQE 218
            +GTE+FVGKIPRDL+EDELVPLFEKAGPIWDLRLMMDPL+G NRGYAF+TFC KEAAQE
Sbjct: 61  GIGTEVFVGKIPRDLYEDELVPLFEKAGPIWDLRLMMDPLSGQNRGYAFITFCGKEAAQE 120

Query: 219 AVKLYNNHEIRSGKHIGVCISVANNRLFVGSIPKSKTKEQILEEFSKVT---EGLTDVIL 275
           AVKL +++EIR GKH+GVCISVANNRLFVGSIPK+KTKE ILEEFSKVT   EGL DVIL
Sbjct: 121 AVKLCDSYEIRPGKHLGVCISVANNRLFVGSIPKNKTKENILEEFSKVTGLTEGLVDVIL 180

Query: 276 YHQPDDKKKNRGFCFLEYEDHKTAAQ---------------------------------- 301
           YHQPDDKKKNRGFCFLEYEDHK+AAQ                                  
Sbjct: 181 YHQPDDKKKNRGFCFLEYEDHKSAAQARRRLMSGKVKVWGNVVTVEWADPVEEPDPEVMA 240

Query: 302 -VKVLFVRNLANTVTEEILEKAFSQFGKLERVKKLKDYAFIHFDERDGAVKAMEEMNGKD 360
            VKVLFVRNLA TVTEEILEK+FS+FGKLERVKKLKDYAF+HF++R  AVKAM+EMNGK+
Sbjct: 241 KVKVLFVRNLATTVTEEILEKSFSEFGKLERVKKLKDYAFVHFEDRGAAVKAMDEMNGKE 300

Query: 361 LEGENIEIVFAKPPDQKRKERKAQRQAAKNQMYDDYYYYGPPHMPPPTRGRGR-GGRGGY 419
           +EGE IEIV AKPPD+KRKER+A RQA+++  Y+DYYY+ PP MPPP RGRGR GGRGGY
Sbjct: 301 IEGEEIEIVLAKPPDKKRKERQAARQASRSTAYEDYYYHPPPRMPPPIRGRGRGGGRGGY 360

Query: 420 GYPPDYYGYEDYY-DYYGYDYHNYRGGYEDPYYGYED-FQVGARGRGGRGARGA-APSRG 476
           GYPPDYYGYEDYY DYYGYDYH+YRGGYEDPYYGY+D + V  RG GGRG RGA  P RG
Sbjct: 361 GYPPDYYGYEDYYDDYYGYDYHDYRGGYEDPYYGYDDGYAVRGRG-GGRGGRGAPPPPRG 419

Query: 477 RGAAPPRGRAGYSQRGGP-GSARGVRGARGG-AQQQRGRGVRGARGGRGGNVGGKRKADG 534
           RGA PPRGRAGYSQRG P G  RG RG RGG AQQQRGRG RG+RG RGGNVGGKRKADG
Sbjct: 420 RGAPPPRGRAGYSQRGAPLGPPRGSRGGRGGPAQQQRGRGSRGSRGNRGGNVGGKRKADG 479

Query: 535 YNQPDSKRRQTNN-QNWGSQPIAQQPL-QGGDHSGNYGYKSENQEFYQDTFGQQWK 588
           YNQPDSKRRQTNN QNWGSQPIAQQPL QGGD+SGNYGY ++NQEFYQDT+GQQWK
Sbjct: 480 YNQPDSKRRQTNNQQNWGSQPIAQQPLQQGGDYSGNYGYNNDNQEFYQDTYGQQWK 535


>gi|148833513 RNA binding motif protein 47 isoform a [Homo sapiens]
          Length = 593

 Score =  300 bits (768), Expect = 2e-81
 Identities = 194/445 (43%), Positives = 249/445 (55%), Gaps = 86/445 (19%)

Query: 111 KVADSSKG-PDEAKIKALLERTGYTLDVTTGQRKYGGPPPDSVYSGQQPSVGTEIFVGKI 169
           KV +   G P+EA + AL+ERTGY++    GQRKYGGPPP   + G  P  G E+FVGKI
Sbjct: 21  KVPEGVAGAPNEAALLALMERTGYSMVQENGQRKYGGPPPG--WEGPHPQRGCEVFVGKI 78

Query: 170 PRDLFEDELVPLFEKAGPIWDLRLMMDPLTGLNRGYAFVTFCTKEAAQEAVKLYNNHEIR 229
           PRD++EDELVP+FE  G I++LRLMMD   G NRGYAFV +C K  A+ AV+  NN+EIR
Sbjct: 79  PRDVYEDELVPVFEAVGRIYELRLMMD-FDGKNRGYAFVMYCHKHEAKRAVRELNNYEIR 137

Query: 230 SGKHIGVCISVANNRLFVGSIPKSKTKEQILEEFSKVTEGLTDVILYHQPDDKKKNRGFC 289
            G+ +GVC SV N RLF+G IPK K +E+ILEE +KVTEG+ DVI+Y    DK KNRGF 
Sbjct: 138 PGRLLGVCCSVDNCRLFIGGIPKMKKREEILEEIAKVTEGVLDVIVYASAADKMKNRGFA 197

Query: 290 FLEYEDHKTAAQ-----------------------------------VKVLFVRNLANTV 314
           F+EYE H+ AA                                    VK+L+VRNL    
Sbjct: 198 FVEYESHRAAAMARRKLMPGRIQLWGHQIAVDWAEPEIDVDEDVMETVKILYVRNLMIET 257

Query: 315 TEEILEKAFSQF--GKLERVKKLKDYAFIHFDERDGAVKAMEEMNGKDLEGENIEIVFAK 372
           TE+ ++K+F QF  G +ERVKK++DYAF+HF  R+ AV AM  +NG +LEG  +E+  AK
Sbjct: 258 TEDTIKKSFGQFNPGCVERVKKIRDYAFVHFTSREDAVHAMNNLNGTELEGSCLEVTLAK 317

Query: 373 PPDQKRKERKAQRQAAKNQMYDDYYYYGPPHMPPPTRGRGRGGRGGYGYPPDYYGYEDY- 431
           P D   KE+ ++ Q A                      RG G       P   Y  + Y 
Sbjct: 318 PVD---KEQYSRYQKA---------------------ARGGGAAEAAQQPSYVYSCDPYT 353

Query: 432 YDYYGYDYHNYRGGYEDPYYGYEDFQVGA-RGRGGRGARGAAPSRGRGAAPPRGRAGYSQ 490
             YYGY Y+   G   D +      + G+ RGRG    RGAA +R  G   PRG    S 
Sbjct: 354 LAYYGYPYNALIGPNRDYF-----VKAGSIRGRG----RGAAGNRAPG---PRG----SY 397

Query: 491 RGGPGSARGV--RGARG-GAQQQRG 512
            GG  + RG+  R   G G QQ++G
Sbjct: 398 LGGYSAGRGIYSRYHEGKGKQQEKG 422


>gi|148833511 RNA binding motif protein 47 isoform b [Homo sapiens]
          Length = 524

 Score =  288 bits (736), Expect = 1e-77
 Identities = 171/390 (43%), Positives = 221/390 (56%), Gaps = 66/390 (16%)

Query: 111 KVADSSKG-PDEAKIKALLERTGYTLDVTTGQRKYGGPPPDSVYSGQQPSVGTEIFVGKI 169
           KV +   G P+EA + AL+ERTGY++    GQRKYGGPPP   + G  P  G E+FVGKI
Sbjct: 21  KVPEGVAGAPNEAALLALMERTGYSMVQENGQRKYGGPPPG--WEGPHPQRGCEVFVGKI 78

Query: 170 PRDLFEDELVPLFEKAGPIWDLRLMMDPLTGLNRGYAFVTFCTKEAAQEAVKLYNNHEIR 229
           PRD++EDELVP+FE  G I++LRLMMD   G NRGYAFV +C K  A+ AV+  NN+EIR
Sbjct: 79  PRDVYEDELVPVFEAVGRIYELRLMMD-FDGKNRGYAFVMYCHKHEAKRAVRELNNYEIR 137

Query: 230 SGKHIGVCISVANNRLFVGSIPKSKTKEQILEEFSKVTEGLTDVILYHQPDDKKKNRGFC 289
            G+ +GVC SV N RLF+G IPK K +E+ILEE +KVTEG+ DVI+Y    DK KNRGF 
Sbjct: 138 PGRLLGVCCSVDNCRLFIGGIPKMKKREEILEEIAKVTEGVLDVIVYASAADKMKNRGFA 197

Query: 290 FLEYEDHKTAAQ-----------------------------------VKVLFVRNLANTV 314
           F+EYE H+ AA                                    VK+L+VRNL    
Sbjct: 198 FVEYESHRAAAMARRKLMPGRIQLWGHQIAVDWAEPEIDVDEDVMETVKILYVRNLMIET 257

Query: 315 TEEILEKAFSQF--GKLERVKKLKDYAFIHFDERDGAVKAMEEMNGKDLEGENIEIVFAK 372
           TE+ ++K+F QF  G +ERVKK++DYAF+HF  R+ AV AM  +NG +LEG  +E+  AK
Sbjct: 258 TEDTIKKSFGQFNPGCVERVKKIRDYAFVHFTSREDAVHAMNNLNGTELEGSCLEVTLAK 317

Query: 373 PPDQKRKERKAQRQAAKNQMYDDYYYYGPPHMPPPTRGRGRGGRGGYGYPPDYYGYEDY- 431
           P D   KE+ ++ Q A                      RG G       P   Y  + Y 
Sbjct: 318 PVD---KEQYSRYQKA---------------------ARGGGAAEAAQQPSYVYSCDPYT 353

Query: 432 YDYYGYDYHNYRGGYEDPYYGYEDFQVGAR 461
             YYGY Y+   G   D +       +GA+
Sbjct: 354 LAYYGYPYNALIGPNRDYFVKVAIPAIGAQ 383


>gi|20357575 apobec-1 complementation factor isoform 2 [Homo
           sapiens]
          Length = 594

 Score =  285 bits (728), Expect = 1e-76
 Identities = 172/417 (41%), Positives = 228/417 (54%), Gaps = 59/417 (14%)

Query: 107 KQGTKVADSSKGPDEAKIKALLERTGYTLDVTTGQRKYGGPPPDSVYSGQQPSVGTEIFV 166
           K G  ++ + K   EA ++AL++RTGY+L    GQRKYGGPPP   +    P  G EIF+
Sbjct: 6   KSGDGLSGTQK---EAALRALVQRTGYSLVQENGQRKYGGPPPG--WDAAPPERGCEIFI 60

Query: 167 GKIPRDLFEDELVPLFEKAGPIWDLRLMMDPLTGLNRGYAFVTFCTKEAAQEAVKLYNNH 226
           GK+PRDLFEDEL+PL EK G I+++R+MMD   G NRGYAFVTF  K  A+ A+K  NN+
Sbjct: 61  GKLPRDLFEDELIPLCEKIGKIYEMRMMMD-FNGNNRGYAFVTFSNKVEAKNAIKQLNNY 119

Query: 227 EIRSGKHIGVCISVANNRLFVGSIPKSKTKEQILEEFSKVTEGLTDVILYHQPDDKKKNR 286
           EIR+G+ +GVC SV N RLFVG IPK+K +E+IL E  KVTEG+ DVI+Y    DK KNR
Sbjct: 120 EIRNGRLLGVCASVDNCRLFVGGIPKTKKREEILSEMKKVTEGVVDVIVYPSAADKTKNR 179

Query: 287 GFCFLEYEDHKTAA-----------------------------------QVKVLFVRNLA 311
           GF F+EYE H+ AA                                    VK+L+VRNL 
Sbjct: 180 GFAFVEYESHRAAAMARRKLLPGRIQLWGHGIAVDWAEPEVEVDEDTMSSVKILYVRNLM 239

Query: 312 NTVTEEILEKAFSQF--GKLERVKKLKDYAFIHFDERDGAVKAMEEMNGKDLEGENIEIV 369
            + +EE++EK F+    G +ERVKK++DYAF+HF  R+ AV+AM+ +NGK L+G  IE+ 
Sbjct: 240 LSTSEEMIEKEFNNIKPGAVERVKKIRDYAFVHFSNREDAVEAMKALNGKVLDGSPIEVT 299

Query: 370 FAKPPDQKRKERKAQRQAAKNQMYDDYYYYGPPHMPPPTRGRGRGGRGGYGYPPDYYGYE 429
            AKP D+    R  +    +  M    Y Y    +  PT          Y   P +Y  +
Sbjct: 300 LAKPVDKDSYVRYTRGTGGRGTMLQGEYTYSLGQVYDPTT--------TYLGAPVFYAPQ 351

Query: 430 DYYDYYGYDYHNYRGGYEDPYY--------GYEDFQVGARGRGGRGARGAAPSRGRG 478
            Y       +   +G   +            Y +  VGA G  G G RG     G G
Sbjct: 352 TYAAIPSLHFPATKGHLSNRAIIRAPSVREIYMNVPVGAAGVRGLGGRGYLAYTGLG 408


>gi|20357572 apobec-1 complementation factor isoform 1 [Homo
           sapiens]
          Length = 586

 Score =  285 bits (728), Expect = 1e-76
 Identities = 170/409 (41%), Positives = 225/409 (55%), Gaps = 51/409 (12%)

Query: 107 KQGTKVADSSKGPDEAKIKALLERTGYTLDVTTGQRKYGGPPPDSVYSGQQPSVGTEIFV 166
           K G  ++ + K   EA ++AL++RTGY+L    GQRKYGGPPP   +    P  G EIF+
Sbjct: 6   KSGDGLSGTQK---EAALRALVQRTGYSLVQENGQRKYGGPPPG--WDAAPPERGCEIFI 60

Query: 167 GKIPRDLFEDELVPLFEKAGPIWDLRLMMDPLTGLNRGYAFVTFCTKEAAQEAVKLYNNH 226
           GK+PRDLFEDEL+PL EK G I+++R+MMD   G NRGYAFVTF  K  A+ A+K  NN+
Sbjct: 61  GKLPRDLFEDELIPLCEKIGKIYEMRMMMD-FNGNNRGYAFVTFSNKVEAKNAIKQLNNY 119

Query: 227 EIRSGKHIGVCISVANNRLFVGSIPKSKTKEQILEEFSKVTEGLTDVILYHQPDDKKKNR 286
           EIR+G+ +GVC SV N RLFVG IPK+K +E+IL E  KVTEG+ DVI+Y    DK KNR
Sbjct: 120 EIRNGRLLGVCASVDNCRLFVGGIPKTKKREEILSEMKKVTEGVVDVIVYPSAADKTKNR 179

Query: 287 GFCFLEYEDHKTAA-----------------------------------QVKVLFVRNLA 311
           GF F+EYE H+ AA                                    VK+L+VRNL 
Sbjct: 180 GFAFVEYESHRAAAMARRKLLPGRIQLWGHGIAVDWAEPEVEVDEDTMSSVKILYVRNLM 239

Query: 312 NTVTEEILEKAFSQF--GKLERVKKLKDYAFIHFDERDGAVKAMEEMNGKDLEGENIEIV 369
            + +EE++EK F+    G +ERVKK++DYAF+HF  R+ AV+AM+ +NGK L+G  IE+ 
Sbjct: 240 LSTSEEMIEKEFNNIKPGAVERVKKIRDYAFVHFSNREDAVEAMKALNGKVLDGSPIEVT 299

Query: 370 FAKPPDQKRKERKAQRQAAKNQMYDDYYYYGPPHMPPPTRGRGRGGRGGYGYPPDYYGYE 429
            AKP D+    R  +    +  M    Y Y    +  PT          Y   P +Y  +
Sbjct: 300 LAKPVDKDSYVRYTRGTGGRGTMLQGEYTYSLGQVYDPTT--------TYLGAPVFYAPQ 351

Query: 430 DYYDYYGYDYHNYRGGYEDPYYGYEDFQVGARGRGGRGARGAAPSRGRG 478
            Y       +   +G   +          GA G  G G RG     G G
Sbjct: 352 TYAAIPSLHFPATKGHLSNRAIIRAPSVRGAAGVRGLGGRGYLAYTGLG 400


>gi|21450675 RNA binding motif protein 46 [Homo sapiens]
          Length = 533

 Score =  282 bits (722), Expect = 5e-76
 Identities = 149/300 (49%), Positives = 199/300 (66%), Gaps = 40/300 (13%)

Query: 120 DEAKIKALLERTGYTLDVTTGQRKYGGPPPDSVYSGQQPSVGTEIFVGKIPRDLFEDELV 179
           +EA + AL+E+TGY +    GQRK+GGPPP   + G  P  G E+FVGKIPRD++EDELV
Sbjct: 21  NEAALLALMEKTGYNMVQENGQRKFGGPPPG--WEGPPPPRGCEVFVGKIPRDMYEDELV 78

Query: 180 PLFEKAGPIWDLRLMMDPLTGLNRGYAFVTFCTKEAAQEAVKLYNNHEIRSGKHIGVCIS 239
           P+FE+AG I++ RLMM+  +G NRGYAFV + TKE AQ A+++ NN+EIR GK IGVC+S
Sbjct: 79  PVFERAGKIYEFRLMME-FSGENRGYAFVMYTTKEEAQLAIRILNNYEIRPGKFIGVCVS 137

Query: 240 VANNRLFVGSIPKSKTKEQILEEFSKVTEGLTDVILYHQPDDKKKNRGFCFLEYEDHKTA 299
           + N RLF+G+IPK K KE+IL+E  KVTEG+ DVI+Y    DK KNRGF F+EYE H+ A
Sbjct: 138 LDNCRLFIGAIPKEKKKEEILDEMKKVTEGVVDVIVYPSATDKTKNRGFAFVEYESHRAA 197

Query: 300 A-----------------------------------QVKVLFVRNLANTVTEEILEKAFS 324
           A                                   +VKVL+VRNL  + TEE ++  F+
Sbjct: 198 AMARRKLIPGTFQLWGHTIQVDWADPEKEVDEETMQRVKVLYVRNLMISTTEETIKAEFN 257

Query: 325 QF--GKLERVKKLKDYAFIHFDERDGAVKAMEEMNGKDLEGENIEIVFAKPPDQKRKERK 382
           +F  G +ERVKKL+DYAF+HF  R+ AV AM  MNGK ++G +IE+  AKP +++   R+
Sbjct: 258 KFKPGAVERVKKLRDYAFVHFFNREDAVAAMSVMNGKCIDGASIEVTLAKPVNKENTWRQ 317


>gi|20357578 apobec-1 complementation factor isoform 3 [Homo
           sapiens]
          Length = 594

 Score =  268 bits (685), Expect = 1e-71
 Identities = 159/381 (41%), Positives = 207/381 (54%), Gaps = 48/381 (12%)

Query: 135 LDVTTGQRKYGGPPPDSVYSGQQPSVGTEIFVGKIPRDLFEDELVPLFEKAGPIWDLRLM 194
           L+   GQRKYGGPPP   +    P  G EIF+GK+PRDLFEDEL+PL EK G I+++R+M
Sbjct: 39  LEKENGQRKYGGPPPG--WDAAPPERGCEIFIGKLPRDLFEDELIPLCEKIGKIYEMRMM 96

Query: 195 MDPLTGLNRGYAFVTFCTKEAAQEAVKLYNNHEIRSGKHIGVCISVANNRLFVGSIPKSK 254
           MD   G NRGYAFVTF  K  A+ A+K  NN+EIR+G+ +GVC SV N RLFVG IPK+K
Sbjct: 97  MD-FNGNNRGYAFVTFSNKVEAKNAIKQLNNYEIRNGRLLGVCASVDNCRLFVGGIPKTK 155

Query: 255 TKEQILEEFSKVTEGLTDVILYHQPDDKKKNRGFCFLEYEDHKTAA-------------- 300
            +E+IL E  KVTEG+ DVI+Y    DK KNRGF F+EYE H+ AA              
Sbjct: 156 KREEILSEMKKVTEGVVDVIVYPSAADKTKNRGFAFVEYESHRAAAMARRKLLPGRIQLW 215

Query: 301 ---------------------QVKVLFVRNLANTVTEEILEKAFSQF--GKLERVKKLKD 337
                                 VK+L+VRNL  + +EE++EK F+    G +ERVKK++D
Sbjct: 216 GHGIAVDWAEPEVEVDEDTMSSVKILYVRNLMLSTSEEMIEKEFNNIKPGAVERVKKIRD 275

Query: 338 YAFIHFDERDGAVKAMEEMNGKDLEGENIEIVFAKPPDQKRKERKAQRQAAKNQMYDDYY 397
           YAF+HF  R+ AV+AM+ +NGK L+G  IE+  AKP D+    R  +    +  M    Y
Sbjct: 276 YAFVHFSNREDAVEAMKALNGKVLDGSPIEVTLAKPVDKDSYVRYTRGTGGRGTMLQGEY 335

Query: 398 YYGPPHMPPPTRGRGRGGRGGYGYPPDYYGYEDYYDYYGYDYHNYRGGYEDPYYGYEDFQ 457
            Y    +  PT          Y   P +Y  + Y       +   +G   +         
Sbjct: 336 TYSLGQVYDPTT--------TYLGAPVFYAPQTYAAIPSLHFPATKGHLSNRAIIRAPSV 387

Query: 458 VGARGRGGRGARGAAPSRGRG 478
            GA G  G G RG     G G
Sbjct: 388 RGAAGVRGLGGRGYLAYTGLG 408


>gi|34740339 dead end homolog 1 [Homo sapiens]
          Length = 353

 Score =  123 bits (309), Expect = 4e-28
 Identities = 65/199 (32%), Positives = 108/199 (54%), Gaps = 5/199 (2%)

Query: 120 DEAKIKALLERTGYTLDVTTGQRKYGGPPPDSVYSGQQPSVGTEIFVGKIPRDLFEDELV 179
           ++A ++A +  TG  L    GQRKYGGPPP  V  G  P  G+E+F+G++P+D++E +L+
Sbjct: 18  NKAALEAWVRETGIRLVQVNGQRKYGGPPPGWV--GSPPPAGSEVFIGRLPQDVYEHQLI 75

Query: 180 PLFEKAGPIWDLRLMMDPLTGLNRGYAFVTFCTKEAAQEAVKLYNNHEIRSGKHIGVCIS 239
           PLF++ G +++ RLMM   +GLNRG+A+  + ++  AQ A+   +NH +R    + VC S
Sbjct: 76  PLFQRVGRLYEFRLMM-TFSGLNRGFAYARYSSRRGAQAAIATLHNHPLRPSCPLLVCRS 134

Query: 240 VANNRLFVGSIPKSKTKEQILEEFSKVTEGLTDVILYHQPDDKKKNRGFCFLEYEDHKTA 299
                L V  +P + T+  +L     +  GL +  L   P           L++  H+ A
Sbjct: 135 TEKCELSVDGLPPNLTRSALLLALQPLGPGLQEARLLPSPGPAPGQ--IALLKFSSHRAA 192

Query: 300 AQVKVLFVRNLANTVTEEI 318
           A  K   V   ++   E++
Sbjct: 193 AMAKKALVEGQSHLCGEQV 211


>gi|168229150 poly(A) binding protein, cytoplasmic 4-like [Homo
           sapiens]
          Length = 370

 Score = 90.9 bits (224), Expect = 3e-18
 Identities = 69/282 (24%), Positives = 126/282 (44%), Gaps = 64/282 (22%)

Query: 164 IFVGKIPRDLFEDELVPLFEKAGPIWDLRLMMDPLTGLNRGYAFVTFCTKEAAQEAVKLY 223
           ++VG +  D+ ED L   F   GP+  +R+  D +T  + GYA+V F     AQ+A+   
Sbjct: 12  LYVGDLHADVTEDLLFRKFSTVGPVLSIRICRDQVTRRSLGYAYVNFLQLADAQKALDTM 71

Query: 224 NNHEIRSGKHIGVCISVAN--------NRLFVGSIPKSKTKEQILEEFSKVTEGLTDVIL 275
           N  +I  GK I +  S  +          +F+ ++ KS   + + E FS   + L+  ++
Sbjct: 72  N-FDIIKGKSIRLMWSQRDAYLRRSGIGNVFIKNLDKSIDNKTLYEHFSAFGKILSSKVM 130

Query: 276 YHQPDDKKKNRGFCFLEYEDHKTA------------------------------------ 299
                D + ++G+ F+ +++   A                                    
Sbjct: 131 ----SDDQGSKGYAFVHFQNQSAADRAIEEMNGKLLKGCKVFVGRFKNRKDREAELRSKA 186

Query: 300 AQVKVLFVRNLANTVTEEILEKAFSQFGKLERVK-------KLKDYAFIHFDERDGAVKA 352
           ++   ++++N    + +E L+  FS++GK   VK       K K + F+ FD  + A KA
Sbjct: 187 SEFTNVYIKNFGGDMDDERLKDVFSKYGKTLSVKVMTDSSGKSKGFGFVSFDSHEAAKKA 246

Query: 353 MEEMNGKDLEGENIEIVFAKPPDQKRKERKAQRQAAKNQMYD 394
           +EEMNG+D+ G+ I +         R ++K +RQA   QM++
Sbjct: 247 VEEMNGRDINGQLIFV--------GRAQKKVERQAELKQMFE 280



 Score = 71.2 bits (173), Expect = 2e-12
 Identities = 55/217 (25%), Positives = 99/217 (45%), Gaps = 44/217 (20%)

Query: 162 TEIFVGKIPRDLFEDELVPLFEKAGPIWDLRLMMDPLTGLNRGYAFVTFCTKEAAQEAVK 221
           T +++     D+ ++ L  +F K G    +++M D  +G ++G+ FV+F + EAA++AV+
Sbjct: 190 TNVYIKNFGGDMDDERLKDVFSKYGKTLSVKVMTDS-SGKSKGFGFVSFDSHEAAKKAVE 248

Query: 222 LYNNHEIRSGKHIGVCISVANNRLFVGSIPKSKTKEQILEEFSKVTEGLTDVILYHQPDD 281
             N  +I                +FVG   K   ++  L++  +  +             
Sbjct: 249 EMNGRDIN------------GQLIFVGRAQKKVERQAELKQMFEQLK------------- 283

Query: 282 KKKNRGFCFLEYEDHKTAAQVKVLFVRNLANTVTEEILEKAFSQFGKLERVKKL------ 335
           +++ RG             Q   L+++NL +T+ +E L   FS FG + RVK +      
Sbjct: 284 RERIRG------------CQGVKLYIKNLDDTIDDEKLRNEFSSFGSISRVKVMQEEGQS 331

Query: 336 KDYAFIHFDERDGAVKAMEEMNGKDLEGENIEIVFAK 372
           K +  I F   + A KAM EMNG+ L  + + I  A+
Sbjct: 332 KGFGLICFSSPEDATKAMTEMNGRILGSKPLSIALAQ 368


>gi|208431836 poly A binding protein, cytoplasmic 4 isoform 3 [Homo
           sapiens]
          Length = 631

 Score = 82.8 bits (203), Expect = 8e-16
 Identities = 68/284 (23%), Positives = 128/284 (45%), Gaps = 56/284 (19%)

Query: 164 IFVGKIPRDLFEDELVPLFEKAGPIWDLRLMMDPLTGLNRGYAFVTFCTKEAAQEAVKLY 223
           ++VG +  D+ E  L   F  AGP+  +R+  D +T  + GYA+V F     A+ A+   
Sbjct: 13  LYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDTM 72

Query: 224 NNHEIRSGKHIGVCISVANNRL--------FVGSIPKSKTKEQILEEFSKVTEGLTDVIL 275
           N  ++  GK I +  S  +  L        F+ ++ KS   + + + FS     L+  ++
Sbjct: 73  N-FDVIKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNILSCKVV 131

Query: 276 YHQPDDKKKNRGFCFLEYEDHKTAAQV------------KV------------------- 304
                D+  ++G+ F+ +E  + A +             KV                   
Sbjct: 132 C----DENGSKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFVGRFKSRKEREAELGAKA 187

Query: 305 -----LFVRNLANTVTEEILEKAFSQFGKLERVKKLKD-------YAFIHFDERDGAVKA 352
                ++++N    V +E L++ FSQFGK   VK ++D       + F+ +++ + A KA
Sbjct: 188 KEFTNVYIKNFGEEVDDESLKELFSQFGKTLSVKVMRDPNGKSKGFGFVSYEKHEDANKA 247

Query: 353 MEEMNGKDLEGENIEIVFAKPPDQKRKERKAQRQAAKNQMYDDY 396
           +EEMNGK++ G+ I +  A+   +++ E K + +  K +    Y
Sbjct: 248 VEEMNGKEISGKIIFVGRAQKKVERQAELKRKFEQLKQERISRY 291



 Score = 69.7 bits (169), Expect = 7e-12
 Identities = 73/308 (23%), Positives = 131/308 (42%), Gaps = 80/308 (25%)

Query: 146 GPPPDSVYSGQQPSVGTE----IFVGKIPRDLFEDELVPLFEKAGPIWDLRLMMDPLTGL 201
           G P   ++S + PS+       +F+  + + +    L   F   G I   +++ D     
Sbjct: 79  GKPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDE--NG 136

Query: 202 NRGYAFVTFCTKEAAQEAVK-----LYNNHEIRSGK---------HIGVCISVANNRLFV 247
           ++GYAFV F T+EAA +A++     L N+ ++  G+          +G       N +++
Sbjct: 137 SKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFVGRFKSRKEREAELGAKAKEFTN-VYI 195

Query: 248 GSIPKSKTKEQILEEFSKVTEGLTDVILYHQPDDKKKNRGFCFLEYEDHKTA-------- 299
            +  +    E + E FS+  + L+  ++    D   K++GF F+ YE H+ A        
Sbjct: 196 KNFGEEVDDESLKELFSQFGKTLSVKVMR---DPNGKSKGFGFVSYEKHEDANKAVEEMN 252

Query: 300 -------------AQVKV-------------------------LFVRNLANTVTEEILEK 321
                        AQ KV                         L+++NL +T+ +E L K
Sbjct: 253 GKEISGKIIFVGRAQKKVERQAELKRKFEQLKQERISRYQGVNLYIKNLDDTIDDEKLRK 312

Query: 322 AFSQFGKLERVK------KLKDYAFIHFDERDGAVKAMEEMNGKDLEGENIEIVFAKPPD 375
            FS FG +   K      + K + F+ F   + A KA+ EMNG+ +  + + +  A    
Sbjct: 313 EFSPFGSITSAKVMLEDGRSKGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYVALA---- 368

Query: 376 QKRKERKA 383
           Q+++ERKA
Sbjct: 369 QRKEERKA 376



 Score = 39.7 bits (91), Expect = 0.008
 Identities = 26/111 (23%), Positives = 54/111 (48%), Gaps = 15/111 (13%)

Query: 305 LFVRNLANTVTEEILEKAFSQFGKLERVKKLKD--------YAFIHFDERDGAVKAMEEM 356
           L+V +L + VTE +L + FS  G +  ++  +D        YA+++F +   A +A++ M
Sbjct: 13  LYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDTM 72

Query: 357 NGKDLEGENIEIVFAKPPDQKRKE-------RKAQRQAAKNQMYDDYYYYG 400
           N   ++G+ I I++++     RK        +   +      +YD +  +G
Sbjct: 73  NFDVIKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFG 123


>gi|4504715 poly A binding protein, cytoplasmic 4 isoform 2 [Homo
           sapiens]
          Length = 644

 Score = 82.8 bits (203), Expect = 8e-16
 Identities = 68/284 (23%), Positives = 128/284 (45%), Gaps = 56/284 (19%)

Query: 164 IFVGKIPRDLFEDELVPLFEKAGPIWDLRLMMDPLTGLNRGYAFVTFCTKEAAQEAVKLY 223
           ++VG +  D+ E  L   F  AGP+  +R+  D +T  + GYA+V F     A+ A+   
Sbjct: 13  LYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDTM 72

Query: 224 NNHEIRSGKHIGVCISVANNRL--------FVGSIPKSKTKEQILEEFSKVTEGLTDVIL 275
           N  ++  GK I +  S  +  L        F+ ++ KS   + + + FS     L+  ++
Sbjct: 73  N-FDVIKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNILSCKVV 131

Query: 276 YHQPDDKKKNRGFCFLEYEDHKTAAQV------------KV------------------- 304
                D+  ++G+ F+ +E  + A +             KV                   
Sbjct: 132 C----DENGSKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFVGRFKSRKEREAELGAKA 187

Query: 305 -----LFVRNLANTVTEEILEKAFSQFGKLERVKKLKD-------YAFIHFDERDGAVKA 352
                ++++N    V +E L++ FSQFGK   VK ++D       + F+ +++ + A KA
Sbjct: 188 KEFTNVYIKNFGEEVDDESLKELFSQFGKTLSVKVMRDPNGKSKGFGFVSYEKHEDANKA 247

Query: 353 MEEMNGKDLEGENIEIVFAKPPDQKRKERKAQRQAAKNQMYDDY 396
           +EEMNGK++ G+ I +  A+   +++ E K + +  K +    Y
Sbjct: 248 VEEMNGKEISGKIIFVGRAQKKVERQAELKRKFEQLKQERISRY 291



 Score = 69.7 bits (169), Expect = 7e-12
 Identities = 73/308 (23%), Positives = 131/308 (42%), Gaps = 80/308 (25%)

Query: 146 GPPPDSVYSGQQPSVGTE----IFVGKIPRDLFEDELVPLFEKAGPIWDLRLMMDPLTGL 201
           G P   ++S + PS+       +F+  + + +    L   F   G I   +++ D     
Sbjct: 79  GKPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDE--NG 136

Query: 202 NRGYAFVTFCTKEAAQEAVK-----LYNNHEIRSGK---------HIGVCISVANNRLFV 247
           ++GYAFV F T+EAA +A++     L N+ ++  G+          +G       N +++
Sbjct: 137 SKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFVGRFKSRKEREAELGAKAKEFTN-VYI 195

Query: 248 GSIPKSKTKEQILEEFSKVTEGLTDVILYHQPDDKKKNRGFCFLEYEDHKTA-------- 299
            +  +    E + E FS+  + L+  ++    D   K++GF F+ YE H+ A        
Sbjct: 196 KNFGEEVDDESLKELFSQFGKTLSVKVMR---DPNGKSKGFGFVSYEKHEDANKAVEEMN 252

Query: 300 -------------AQVKV-------------------------LFVRNLANTVTEEILEK 321
                        AQ KV                         L+++NL +T+ +E L K
Sbjct: 253 GKEISGKIIFVGRAQKKVERQAELKRKFEQLKQERISRYQGVNLYIKNLDDTIDDEKLRK 312

Query: 322 AFSQFGKLERVK------KLKDYAFIHFDERDGAVKAMEEMNGKDLEGENIEIVFAKPPD 375
            FS FG +   K      + K + F+ F   + A KA+ EMNG+ +  + + +  A    
Sbjct: 313 EFSPFGSITSAKVMLEDGRSKGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYVALA---- 368

Query: 376 QKRKERKA 383
           Q+++ERKA
Sbjct: 369 QRKEERKA 376



 Score = 39.7 bits (91), Expect = 0.008
 Identities = 26/111 (23%), Positives = 54/111 (48%), Gaps = 15/111 (13%)

Query: 305 LFVRNLANTVTEEILEKAFSQFGKLERVKKLKD--------YAFIHFDERDGAVKAMEEM 356
           L+V +L + VTE +L + FS  G +  ++  +D        YA+++F +   A +A++ M
Sbjct: 13  LYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDTM 72

Query: 357 NGKDLEGENIEIVFAKPPDQKRKE-------RKAQRQAAKNQMYDDYYYYG 400
           N   ++G+ I I++++     RK        +   +      +YD +  +G
Sbjct: 73  NFDVIKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFG 123


>gi|208431833 poly A binding protein, cytoplasmic 4 isoform 1 [Homo
           sapiens]
          Length = 660

 Score = 82.8 bits (203), Expect = 8e-16
 Identities = 68/284 (23%), Positives = 128/284 (45%), Gaps = 56/284 (19%)

Query: 164 IFVGKIPRDLFEDELVPLFEKAGPIWDLRLMMDPLTGLNRGYAFVTFCTKEAAQEAVKLY 223
           ++VG +  D+ E  L   F  AGP+  +R+  D +T  + GYA+V F     A+ A+   
Sbjct: 13  LYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDTM 72

Query: 224 NNHEIRSGKHIGVCISVANNRL--------FVGSIPKSKTKEQILEEFSKVTEGLTDVIL 275
           N  ++  GK I +  S  +  L        F+ ++ KS   + + + FS     L+  ++
Sbjct: 73  N-FDVIKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNILSCKVV 131

Query: 276 YHQPDDKKKNRGFCFLEYEDHKTAAQV------------KV------------------- 304
                D+  ++G+ F+ +E  + A +             KV                   
Sbjct: 132 C----DENGSKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFVGRFKSRKEREAELGAKA 187

Query: 305 -----LFVRNLANTVTEEILEKAFSQFGKLERVKKLKD-------YAFIHFDERDGAVKA 352
                ++++N    V +E L++ FSQFGK   VK ++D       + F+ +++ + A KA
Sbjct: 188 KEFTNVYIKNFGEEVDDESLKELFSQFGKTLSVKVMRDPNGKSKGFGFVSYEKHEDANKA 247

Query: 353 MEEMNGKDLEGENIEIVFAKPPDQKRKERKAQRQAAKNQMYDDY 396
           +EEMNGK++ G+ I +  A+   +++ E K + +  K +    Y
Sbjct: 248 VEEMNGKEISGKIIFVGRAQKKVERQAELKRKFEQLKQERISRY 291



 Score = 69.7 bits (169), Expect = 7e-12
 Identities = 73/308 (23%), Positives = 131/308 (42%), Gaps = 80/308 (25%)

Query: 146 GPPPDSVYSGQQPSVGTE----IFVGKIPRDLFEDELVPLFEKAGPIWDLRLMMDPLTGL 201
           G P   ++S + PS+       +F+  + + +    L   F   G I   +++ D     
Sbjct: 79  GKPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDE--NG 136

Query: 202 NRGYAFVTFCTKEAAQEAVK-----LYNNHEIRSGK---------HIGVCISVANNRLFV 247
           ++GYAFV F T+EAA +A++     L N+ ++  G+          +G       N +++
Sbjct: 137 SKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFVGRFKSRKEREAELGAKAKEFTN-VYI 195

Query: 248 GSIPKSKTKEQILEEFSKVTEGLTDVILYHQPDDKKKNRGFCFLEYEDHKTA-------- 299
            +  +    E + E FS+  + L+  ++    D   K++GF F+ YE H+ A        
Sbjct: 196 KNFGEEVDDESLKELFSQFGKTLSVKVMR---DPNGKSKGFGFVSYEKHEDANKAVEEMN 252

Query: 300 -------------AQVKV-------------------------LFVRNLANTVTEEILEK 321
                        AQ KV                         L+++NL +T+ +E L K
Sbjct: 253 GKEISGKIIFVGRAQKKVERQAELKRKFEQLKQERISRYQGVNLYIKNLDDTIDDEKLRK 312

Query: 322 AFSQFGKLERVK------KLKDYAFIHFDERDGAVKAMEEMNGKDLEGENIEIVFAKPPD 375
            FS FG +   K      + K + F+ F   + A KA+ EMNG+ +  + + +  A    
Sbjct: 313 EFSPFGSITSAKVMLEDGRSKGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYVALA---- 368

Query: 376 QKRKERKA 383
           Q+++ERKA
Sbjct: 369 QRKEERKA 376



 Score = 39.7 bits (91), Expect = 0.008
 Identities = 26/111 (23%), Positives = 54/111 (48%), Gaps = 15/111 (13%)

Query: 305 LFVRNLANTVTEEILEKAFSQFGKLERVKKLKD--------YAFIHFDERDGAVKAMEEM 356
           L+V +L + VTE +L + FS  G +  ++  +D        YA+++F +   A +A++ M
Sbjct: 13  LYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDTM 72

Query: 357 NGKDLEGENIEIVFAKPPDQKRKE-------RKAQRQAAKNQMYDDYYYYG 400
           N   ++G+ I I++++     RK        +   +      +YD +  +G
Sbjct: 73  NFDVIKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFG 123


>gi|24762232 bruno-like 5, RNA binding protein isoform 1 [Homo
           sapiens]
          Length = 485

 Score = 80.9 bits (198), Expect = 3e-15
 Identities = 50/168 (29%), Positives = 88/168 (52%), Gaps = 12/168 (7%)

Query: 145 GGPPPDSVYSGQQPSVGTEIFVGKIPRDLFEDELVPLFEKAGPIWDLRLMMDPLTGLNRG 204
           G  PP     G +     ++FVG+IPR L E +L PLFE+ G I++L ++ DP TG+++G
Sbjct: 28  GPEPPGGQPDGMKDLDAIKLFVGQIPRHLDEKDLKPLFEQFGRIYELTVLKDPYTGMHKG 87

Query: 205 YAFVTFCTKEAAQEAVKLYNNHEIRSGKHIGVCISVANN--------RLFVGSIPKSKTK 256
            AF+T+C +++A +A    +  +   G    + +  A++        +LFVG + K +++
Sbjct: 88  CAFLTYCARDSAIKAQTALHEQKTLPGMARPIQVKPADSESRGGRDRKLFVGMLNKQQSE 147

Query: 257 EQILEEFSKVTEGLTDVILYHQPDDKKKNRGFCFLEYEDHKTAAQVKV 304
           E +L  F      + +  +   PD   K  G  F+++  H T AQ  +
Sbjct: 148 EDVLRLFQPFGV-IDECTVLRGPDGSSK--GCAFVKFSSH-TEAQAAI 191



 Score = 42.4 bits (98), Expect = 0.001
 Identities = 22/82 (26%), Positives = 41/82 (50%)

Query: 147 PPPDSVYSGQQPSVGTEIFVGKIPRDLFEDELVPLFEKAGPIWDLRLMMDPLTGLNRGYA 206
           PPP      ++   G  +F+  +P++  + EL  +F   G I   ++ MD  T  ++ + 
Sbjct: 385 PPPLLQQQQREGPEGCNLFIYHLPQEFGDTELTQMFLPFGNIISSKVFMDRATNQSKCFG 444

Query: 207 FVTFCTKEAAQEAVKLYNNHEI 228
           FV+F    +AQ A++  N  +I
Sbjct: 445 FVSFDNPASAQAAIQAMNGFQI 466



 Score = 33.1 bits (74), Expect = 0.73
 Identities = 22/83 (26%), Positives = 38/83 (45%), Gaps = 8/83 (9%)

Query: 305 LFVRNLANTVTEEILEKAFSQFGKLERVKKLKD--------YAFIHFDERDGAVKAMEEM 356
           LFV  +   + E+ L+  F QFG++  +  LKD         AF+ +  RD A+KA   +
Sbjct: 47  LFVGQIPRHLDEKDLKPLFEQFGRIYELTVLKDPYTGMHKGCAFLTYCARDSAIKAQTAL 106

Query: 357 NGKDLEGENIEIVFAKPPDQKRK 379
           + +         +  KP D + +
Sbjct: 107 HEQKTLPGMARPIQVKPADSESR 129



 Score = 30.4 bits (67), Expect = 4.7
 Identities = 19/79 (24%), Positives = 34/79 (43%), Gaps = 8/79 (10%)

Query: 305 LFVRNLANTVTEEILEKAFSQFGKLERVKKLKD--------YAFIHFDERDGAVKAMEEM 356
           LF+ +L     +  L + F  FG +   K   D        + F+ FD    A  A++ M
Sbjct: 402 LFIYHLPQEFGDTELTQMFLPFGNIISSKVFMDRATNQSKCFGFVSFDNPASAQAAIQAM 461

Query: 357 NGKDLEGENIEIVFAKPPD 375
           NG  +  + +++   +P D
Sbjct: 462 NGFQIGMKRLKVQLKRPKD 480


>gi|187761303 bruno-like 4, RNA binding protein isoform 4 [Homo
           sapiens]
          Length = 448

 Score = 76.6 bits (187), Expect = 6e-14
 Identities = 42/144 (29%), Positives = 81/144 (56%), Gaps = 10/144 (6%)

Query: 163 EIFVGKIPRDLFEDELVPLFEKAGPIWDLRLMMDPLTGLNRGYAFVTFCTKEAAQEAVKL 222
           ++F+G+IPR+L E +L PLFE+ G I++L ++ D  TG+++G AF+T+C +E+A +A   
Sbjct: 55  KLFIGQIPRNLDEKDLKPLFEEFGKIYELTVLKDRFTGMHKGCAFLTYCERESALKAQSA 114

Query: 223 YNNHEIRSGKHIGVCISVANN-------RLFVGSIPKSKTKEQILEEFSKVTEGLTDVIL 275
            +  +   G +  + +  A++       +LFVG + K ++++ +   F +    + +  +
Sbjct: 115 LHEQKTLPGMNRPIQVKPADSESRGEDRKLFVGMLNKQQSEDDVRRLF-EAFGNIEECTI 173

Query: 276 YHQPDDKKKNRGFCFLEYEDHKTA 299
              PD   K  G  F++Y  H  A
Sbjct: 174 LRGPDGNSK--GCAFVKYSSHAEA 195



 Score = 35.8 bits (81), Expect = 0.11
 Identities = 26/84 (30%), Positives = 42/84 (50%), Gaps = 10/84 (11%)

Query: 305 LFVRNLANTVTEEILEKAFSQFGKLERVKKLKD--------YAFIHFDERDGAVKAMEEM 356
           LF+  +   + E+ L+  F +FGK+  +  LKD         AF+ + ER+ A+KA   +
Sbjct: 56  LFIGQIPRNLDEKDLKPLFEEFGKIYELTVLKDRFTGMHKGCAFLTYCERESALKAQSAL 115

Query: 357 N-GKDLEGENIEIVFAKPPDQKRK 379
           +  K L G N  I   KP D + +
Sbjct: 116 HEQKTLPGMNRPIQ-VKPADSESR 138


>gi|14110417 heterogeneous nuclear ribonucleoprotein D isoform b
           [Homo sapiens]
          Length = 336

 Score = 74.3 bits (181), Expect = 3e-13
 Identities = 87/367 (23%), Positives = 137/367 (37%), Gaps = 69/367 (18%)

Query: 110 TKVADSSKGPDEAKIKALLERTGYTLDVTTGQRKYGGPPPDSVYSGQQPSVGTEI----- 164
           T     S G  E  + A  +  G      +G    GG        G   S G +I     
Sbjct: 16  TAAVGGSAGEQEGAMVAATQ--GAAAAAGSGAGTGGGTASGGTEGGSAESEGAKIDASKN 73

Query: 165 -------FVGKIPRDLFEDELVPLFEKAGPIWDLRLMMDPLTGLNRGYAFVTFCTKEAAQ 217
                  F+G +  D  + +L   F K G + D  L +DP+TG +RG+ FV F   E+  
Sbjct: 74  EEDEGKMFIGGLSWDTTKKDLKDYFSKFGEVVDCTLKLDPITGRSRGFGFVLFKESESVD 133

Query: 218 EAVKLYNNHEIRSGKHIGVCISVAN------NRLFVGSIPKSKTKEQILEEFSKVTEGLT 271
           + +     H++ +GK I    + A        ++FVG +     +E+I E F     G  
Sbjct: 134 KVMD-QKEHKL-NGKVIDPKRAKAMKTKEPVKKIFVGGLSPDTPEEKIREYFG----GFG 187

Query: 272 DVILYHQPDDKK--KNRGFCFLEYEDHKTAAQVKVLFVRNLANTVTEEILEKAFSQFGKL 329
           +V     P D K  K RGFCF+ +++ +   ++      N+  +  E  +  +  Q+ + 
Sbjct: 188 EVESIELPMDNKTNKRRGFCFITFKEEEPVKKIMEKKYHNVGLSKCEIKVAMSKEQYQQQ 247

Query: 330 ERVKKLKDYAFIHFDERDGAVKAMEEMNGKDLEGENIEIVFAKPPDQKRKERKAQRQAAK 389
           ++           +  R G         G   +  N                    Q   
Sbjct: 248 QQ-----------WGSRGGFAGRARGRGGGPSQNWN--------------------QGYS 276

Query: 390 NQMYDDYYYYGPPHMPPPTRGRGRGGRGGYGYP--PDYYGYEDYYDYY-GYDYHNYRGGY 446
           N     Y  YG          +G GG GGY Y    +YYGY DY +   GY   + RGG+
Sbjct: 277 NYWNQGYGNYG-------YNSQGYGGYGGYDYTGYNNYYGYGDYSNQQSGYGKVSRRGGH 329

Query: 447 EDPYYGY 453
           ++ Y  Y
Sbjct: 330 QNSYKPY 336



 Score = 58.5 bits (140), Expect = 2e-08
 Identities = 67/276 (24%), Positives = 106/276 (38%), Gaps = 76/276 (27%)

Query: 244 RLFVGSIPKSKTKEQILEEFSKVTEGLTDVILYHQPDDKKKNRGFCFLEYEDH------- 296
           ++F+G +    TK+ + + FSK  E + D  L   P   + +RGF F+ +++        
Sbjct: 79  KMFIGGLSWDTTKKDLKDYFSKFGE-VVDCTLKLDPITGR-SRGFGFVLFKESESVDKVM 136

Query: 297 --------------------KTAAQVKVLFVRNLANTVTEEILEKAFSQFGKLERVK--- 333
                               KT   VK +FV  L+    EE + + F  FG++E ++   
Sbjct: 137 DQKEHKLNGKVIDPKRAKAMKTKEPVKKIFVGGLSPDTPEEKIREYFGGFGEVESIELPM 196

Query: 334 -----KLKDYAFIHFDERDGAVKAMEEM-NGKDLEGENIEIVFAKPPDQKRKERKAQRQA 387
                K + + FI F E +   K ME+  +   L    I++  +K   Q++++  ++   
Sbjct: 197 DNKTNKRRGFCFITFKEEEPVKKIMEKKYHNVGLSKCEIKVAMSKEQYQQQQQWGSRGGF 256

Query: 388 AK-------------NQMYDDYYYYGPPHMPPPTRGRGRGGRGGYGYPPDYYGYEDYYDY 434
           A              NQ Y +Y+                 G G YGY    YG      Y
Sbjct: 257 AGRARGRGGGPSQNWNQGYSNYW---------------NQGYGNYGYNSQGYG-----GY 296

Query: 435 YGYDYHNYRGGYEDPYYGYEDFQVGARGRGGRGARG 470
            GYDY  Y       YYGY D+     G G    RG
Sbjct: 297 GGYDYTGYNN-----YYGYGDYSNQQSGYGKVSRRG 327


>gi|71164894 trinucleotide repeat containing 4 [Homo sapiens]
          Length = 465

 Score = 74.3 bits (181), Expect = 3e-13
 Identities = 43/144 (29%), Positives = 80/144 (55%), Gaps = 10/144 (6%)

Query: 163 EIFVGKIPRDLFEDELVPLFEKAGPIWDLRLMMDPLTGLNRGYAFVTFCTKEAAQEAVKL 222
           ++FVG+IPR L E +L P+FE+ G I++L ++ D  TGL++G AF+T+C +++A +A   
Sbjct: 8   KLFVGQIPRHLEEKDLKPIFEQFGRIFELTVIKDKYTGLHKGCAFLTYCARDSALKAQSA 67

Query: 223 YNNHEIRSGKHIGVCISVANN-------RLFVGSIPKSKTKEQILEEFSKVTEGLTDVIL 275
            +  +   G +  + +  A++       +LFVG + K +T E + + F      + +  +
Sbjct: 68  LHEQKTLPGMNRPIQVKPADSESRGEDRKLFVGMLGKQQTDEDVRKMFEPFGT-IDECTV 126

Query: 276 YHQPDDKKKNRGFCFLEYEDHKTA 299
              PD   K  G  F++++ H  A
Sbjct: 127 LRGPDGTSK--GCAFVKFQTHAEA 148



 Score = 33.5 bits (75), Expect = 0.56
 Identities = 26/84 (30%), Positives = 41/84 (48%), Gaps = 10/84 (11%)

Query: 305 LFVRNLANTVTEEILEKAFSQFGKLERVKKLKD--------YAFIHFDERDGAVKAMEEM 356
           LFV  +   + E+ L+  F QFG++  +  +KD         AF+ +  RD A+KA   +
Sbjct: 9   LFVGQIPRHLEEKDLKPIFEQFGRIFELTVIKDKYTGLHKGCAFLTYCARDSALKAQSAL 68

Query: 357 N-GKDLEGENIEIVFAKPPDQKRK 379
           +  K L G N  I   KP D + +
Sbjct: 69  HEQKTLPGMNRPIQ-VKPADSESR 91



 Score = 32.3 bits (72), Expect = 1.2
 Identities = 19/82 (23%), Positives = 36/82 (43%), Gaps = 8/82 (9%)

Query: 305 LFVRNLANTVTEEILEKAFSQFGKLERVKKLKD--------YAFIHFDERDGAVKAMEEM 356
           +F+ +L    T+  + + F  FG +   K   D        + F+ FD    A  A++ M
Sbjct: 382 IFIYHLPQEFTDSEILQMFVPFGHVISAKVFVDRATNQSKCFGFVSFDNPASAQAAIQAM 441

Query: 357 NGKDLEGENIEIVFAKPPDQKR 378
           NG  +  + +++   +P D  R
Sbjct: 442 NGFQIGMKRLKVQLKRPKDANR 463


>gi|14110420 heterogeneous nuclear ribonucleoprotein D isoform a
           [Homo sapiens]
          Length = 355

 Score = 73.6 bits (179), Expect = 5e-13
 Identities = 74/302 (24%), Positives = 122/302 (40%), Gaps = 55/302 (18%)

Query: 163 EIFVGKIPRDLFEDELVPLFEKAGPIWDLRLMMDPLTGLNRGYAFVTFCTKEAAQEAVKL 222
           ++F+G +  D  + +L   F K G + D  L +DP+TG +RG+ FV F   E+  + +  
Sbjct: 98  KMFIGGLSWDTTKKDLKDYFSKFGEVVDCTLKLDPITGRSRGFGFVLFKESESVDKVMD- 156

Query: 223 YNNHEIRSGKHIGVCISVAN------NRLFVGSIPKSKTKEQILEEFSKVTEGLTDVILY 276
              H++ +GK I    + A        ++FVG +     +E+I E F     G  +V   
Sbjct: 157 QKEHKL-NGKVIDPKRAKAMKTKEPVKKIFVGGLSPDTPEEKIREYFG----GFGEVESI 211

Query: 277 HQPDDKK--KNRGFCFLEYEDHKTAAQVKVLFVRNLANTVTEEILEKAFSQFGKLERVKK 334
             P D K  K RGFCF+ +++ +   ++      N+  +  E  +  +  Q+ + ++   
Sbjct: 212 ELPMDNKTNKRRGFCFITFKEEEPVKKIMEKKYHNVGLSKCEIKVAMSKEQYQQQQQ--- 268

Query: 335 LKDYAFIHFDERDGAVKAMEEMNGKDLEGENIEIVFAKPPDQKRKERKAQRQAAKNQMYD 394
                   +  R G         G   +  N                    Q   N    
Sbjct: 269 --------WGSRGGFAGRARGRGGGPSQNWN--------------------QGYSNYWNQ 300

Query: 395 DYYYYGPPHMPPPTRGRGRGGRGGYGYP--PDYYGYEDYYDYY-GYDYHNYRGGYEDPYY 451
            Y  YG          +G GG GGY Y    +YYGY DY +   GY   + RGG+++ Y 
Sbjct: 301 GYGNYG-------YNSQGYGGYGGYDYTGYNNYYGYGDYSNQQSGYGKVSRRGGHQNSYK 353

Query: 452 GY 453
            Y
Sbjct: 354 PY 355



 Score = 58.5 bits (140), Expect = 2e-08
 Identities = 67/276 (24%), Positives = 106/276 (38%), Gaps = 76/276 (27%)

Query: 244 RLFVGSIPKSKTKEQILEEFSKVTEGLTDVILYHQPDDKKKNRGFCFLEYEDH------- 296
           ++F+G +    TK+ + + FSK  E + D  L   P   + +RGF F+ +++        
Sbjct: 98  KMFIGGLSWDTTKKDLKDYFSKFGE-VVDCTLKLDPITGR-SRGFGFVLFKESESVDKVM 155

Query: 297 --------------------KTAAQVKVLFVRNLANTVTEEILEKAFSQFGKLERVK--- 333
                               KT   VK +FV  L+    EE + + F  FG++E ++   
Sbjct: 156 DQKEHKLNGKVIDPKRAKAMKTKEPVKKIFVGGLSPDTPEEKIREYFGGFGEVESIELPM 215

Query: 334 -----KLKDYAFIHFDERDGAVKAMEEM-NGKDLEGENIEIVFAKPPDQKRKERKAQRQA 387
                K + + FI F E +   K ME+  +   L    I++  +K   Q++++  ++   
Sbjct: 216 DNKTNKRRGFCFITFKEEEPVKKIMEKKYHNVGLSKCEIKVAMSKEQYQQQQQWGSRGGF 275

Query: 388 AK-------------NQMYDDYYYYGPPHMPPPTRGRGRGGRGGYGYPPDYYGYEDYYDY 434
           A              NQ Y +Y+                 G G YGY    YG      Y
Sbjct: 276 AGRARGRGGGPSQNWNQGYSNYW---------------NQGYGNYGYNSQGYG-----GY 315

Query: 435 YGYDYHNYRGGYEDPYYGYEDFQVGARGRGGRGARG 470
            GYDY  Y       YYGY D+     G G    RG
Sbjct: 316 GGYDYTGYNN-----YYGYGDYSNQQSGYGKVSRRG 346


>gi|187761301 bruno-like 4, RNA binding protein isoform 3 [Homo
           sapiens]
          Length = 484

 Score = 73.2 bits (178), Expect = 6e-13
 Identities = 42/153 (27%), Positives = 81/153 (52%), Gaps = 19/153 (12%)

Query: 163 EIFVGKIPRDLFEDELVPLFEKAGPIWDLRLMMDPLTGLNRGYAFVTFCTKEAAQEAVKL 222
           ++F+G+IPR+L E +L PLFE+ G I++L ++ D  TG+++G AF+T+C +E+A +A   
Sbjct: 55  KLFIGQIPRNLDEKDLKPLFEEFGKIYELTVLKDRFTGMHKGCAFLTYCERESALKAQSA 114

Query: 223 YNNHEIRSGKHIGVCISVANN----------------RLFVGSIPKSKTKEQILEEFSKV 266
            +  +   G +  + +  A++                +LFVG + K ++++ +   F + 
Sbjct: 115 LHEQKTLPGMNRPIQVKPADSESRGGSSCLRQPPSHRKLFVGMLNKQQSEDDVRRLF-EA 173

Query: 267 TEGLTDVILYHQPDDKKKNRGFCFLEYEDHKTA 299
              + +  +   PD   K  G  F++Y  H  A
Sbjct: 174 FGNIEECTILRGPDGNSK--GCAFVKYSSHAEA 204



 Score = 39.3 bits (90), Expect = 0.010
 Identities = 27/100 (27%), Positives = 47/100 (47%), Gaps = 6/100 (6%)

Query: 148 PPDSVYSG-----QQPSVGTEIFVGKIPRDLFEDELVPLFEKAGPIWDLRLMMDPLTGLN 202
           P DS   G     +QP    ++FVG + +   ED++  LFE  G I +  ++  P  G +
Sbjct: 132 PADSESRGGSSCLRQPPSHRKLFVGMLNKQQSEDDVRRLFEAFGNIEECTILRGP-DGNS 190

Query: 203 RGYAFVTFCTKEAAQEAVKLYNNHEIRSGKHIGVCISVAN 242
           +G AFV + +   AQ A+   +  +   G    + +  A+
Sbjct: 191 KGCAFVKYSSHAEAQAAINALHGSQTMPGASSSLVVKFAD 230



 Score = 35.8 bits (81), Expect = 0.11
 Identities = 26/84 (30%), Positives = 42/84 (50%), Gaps = 10/84 (11%)

Query: 305 LFVRNLANTVTEEILEKAFSQFGKLERVKKLKD--------YAFIHFDERDGAVKAMEEM 356
           LF+  +   + E+ L+  F +FGK+  +  LKD         AF+ + ER+ A+KA   +
Sbjct: 56  LFIGQIPRNLDEKDLKPLFEEFGKIYELTVLKDRFTGMHKGCAFLTYCERESALKAQSAL 115

Query: 357 N-GKDLEGENIEIVFAKPPDQKRK 379
           +  K L G N  I   KP D + +
Sbjct: 116 HEQKTLPGMNRPIQ-VKPADSESR 138



 Score = 32.3 bits (72), Expect = 1.2
 Identities = 14/54 (25%), Positives = 27/54 (50%)

Query: 325 QFGKLERVKKLKDYAFIHFDERDGAVKAMEEMNGKDLEGENIEIVFAKPPDQKR 378
           +FG  E ++    + F+ FD    A  A++ MNG  +  + +++   +P D  R
Sbjct: 429 EFGDAELMQMFLPFGFVSFDNPASAQTAIQAMNGFQIGMKRLKVQLKRPKDANR 482


>gi|187761299 bruno-like 4, RNA binding protein isoform 2 [Homo
           sapiens]
          Length = 485

 Score = 72.8 bits (177), Expect = 8e-13
 Identities = 42/154 (27%), Positives = 81/154 (52%), Gaps = 20/154 (12%)

Query: 163 EIFVGKIPRDLFEDELVPLFEKAGPIWDLRLMMDPLTGLNRGYAFVTFCTKEAAQEAVKL 222
           ++F+G+IPR+L E +L PLFE+ G I++L ++ D  TG+++G AF+T+C +E+A +A   
Sbjct: 55  KLFIGQIPRNLDEKDLKPLFEEFGKIYELTVLKDRFTGMHKGCAFLTYCERESALKAQSA 114

Query: 223 YNNHEIRSGKHIGVCISVANN-----------------RLFVGSIPKSKTKEQILEEFSK 265
            +  +   G +  + +  A++                 +LFVG + K ++++ +   F +
Sbjct: 115 LHEQKTLPGMNRPIQVKPADSESRGGSSCLRQPPSQDRKLFVGMLNKQQSEDDVRRLF-E 173

Query: 266 VTEGLTDVILYHQPDDKKKNRGFCFLEYEDHKTA 299
               + +  +   PD   K  G  F++Y  H  A
Sbjct: 174 AFGNIEECTILRGPDGNSK--GCAFVKYSSHAEA 205



 Score = 40.4 bits (93), Expect = 0.005
 Identities = 24/87 (27%), Positives = 43/87 (49%), Gaps = 1/87 (1%)

Query: 156 QQPSVGTEIFVGKIPRDLFEDELVPLFEKAGPIWDLRLMMDPLTGLNRGYAFVTFCTKEA 215
           Q PS   ++FVG + +   ED++  LFE  G I +  ++  P  G ++G AFV + +   
Sbjct: 146 QPPSQDRKLFVGMLNKQQSEDDVRRLFEAFGNIEECTILRGP-DGNSKGCAFVKYSSHAE 204

Query: 216 AQEAVKLYNNHEIRSGKHIGVCISVAN 242
           AQ A+   +  +   G    + +  A+
Sbjct: 205 AQAAINALHGSQTMPGASSSLVVKFAD 231



 Score = 35.8 bits (81), Expect = 0.11
 Identities = 26/84 (30%), Positives = 42/84 (50%), Gaps = 10/84 (11%)

Query: 305 LFVRNLANTVTEEILEKAFSQFGKLERVKKLKD--------YAFIHFDERDGAVKAMEEM 356
           LF+  +   + E+ L+  F +FGK+  +  LKD         AF+ + ER+ A+KA   +
Sbjct: 56  LFIGQIPRNLDEKDLKPLFEEFGKIYELTVLKDRFTGMHKGCAFLTYCERESALKAQSAL 115

Query: 357 N-GKDLEGENIEIVFAKPPDQKRK 379
           +  K L G N  I   KP D + +
Sbjct: 116 HEQKTLPGMNRPIQ-VKPADSESR 138



 Score = 32.3 bits (72), Expect = 1.2
 Identities = 14/54 (25%), Positives = 27/54 (50%)

Query: 325 QFGKLERVKKLKDYAFIHFDERDGAVKAMEEMNGKDLEGENIEIVFAKPPDQKR 378
           +FG  E ++    + F+ FD    A  A++ MNG  +  + +++   +P D  R
Sbjct: 430 EFGDAELMQMFLPFGFVSFDNPASAQTAIQAMNGFQIGMKRLKVQLKRPKDANR 483


>gi|13123778 bruno-like 4, RNA binding protein isoform 1 [Homo
           sapiens]
          Length = 486

 Score = 72.8 bits (177), Expect = 8e-13
 Identities = 42/154 (27%), Positives = 81/154 (52%), Gaps = 20/154 (12%)

Query: 163 EIFVGKIPRDLFEDELVPLFEKAGPIWDLRLMMDPLTGLNRGYAFVTFCTKEAAQEAVKL 222
           ++F+G+IPR+L E +L PLFE+ G I++L ++ D  TG+++G AF+T+C +E+A +A   
Sbjct: 55  KLFIGQIPRNLDEKDLKPLFEEFGKIYELTVLKDRFTGMHKGCAFLTYCERESALKAQSA 114

Query: 223 YNNHEIRSGKHIGVCISVANN-----------------RLFVGSIPKSKTKEQILEEFSK 265
            +  +   G +  + +  A++                 +LFVG + K ++++ +   F +
Sbjct: 115 LHEQKTLPGMNRPIQVKPADSESRGGSSCLRQPPSQDRKLFVGMLNKQQSEDDVRRLF-E 173

Query: 266 VTEGLTDVILYHQPDDKKKNRGFCFLEYEDHKTA 299
               + +  +   PD   K  G  F++Y  H  A
Sbjct: 174 AFGNIEECTILRGPDGNSK--GCAFVKYSSHAEA 205



 Score = 40.4 bits (93), Expect = 0.005
 Identities = 24/87 (27%), Positives = 43/87 (49%), Gaps = 1/87 (1%)

Query: 156 QQPSVGTEIFVGKIPRDLFEDELVPLFEKAGPIWDLRLMMDPLTGLNRGYAFVTFCTKEA 215
           Q PS   ++FVG + +   ED++  LFE  G I +  ++  P  G ++G AFV + +   
Sbjct: 146 QPPSQDRKLFVGMLNKQQSEDDVRRLFEAFGNIEECTILRGP-DGNSKGCAFVKYSSHAE 204

Query: 216 AQEAVKLYNNHEIRSGKHIGVCISVAN 242
           AQ A+   +  +   G    + +  A+
Sbjct: 205 AQAAINALHGSQTMPGASSSLVVKFAD 231



 Score = 35.8 bits (81), Expect = 0.11
 Identities = 26/84 (30%), Positives = 42/84 (50%), Gaps = 10/84 (11%)

Query: 305 LFVRNLANTVTEEILEKAFSQFGKLERVKKLKD--------YAFIHFDERDGAVKAMEEM 356
           LF+  +   + E+ L+  F +FGK+  +  LKD         AF+ + ER+ A+KA   +
Sbjct: 56  LFIGQIPRNLDEKDLKPLFEEFGKIYELTVLKDRFTGMHKGCAFLTYCERESALKAQSAL 115

Query: 357 N-GKDLEGENIEIVFAKPPDQKRK 379
           +  K L G N  I   KP D + +
Sbjct: 116 HEQKTLPGMNRPIQ-VKPADSESR 138



 Score = 32.3 bits (72), Expect = 1.2
 Identities = 14/54 (25%), Positives = 27/54 (50%)

Query: 325 QFGKLERVKKLKDYAFIHFDERDGAVKAMEEMNGKDLEGENIEIVFAKPPDQKR 378
           +FG  E ++    + F+ FD    A  A++ MNG  +  + +++   +P D  R
Sbjct: 431 EFGDAELMQMFLPFGFVSFDNPASAQTAIQAMNGFQIGMKRLKVQLKRPKDANR 484


>gi|14043070 heterogeneous nuclear ribonucleoprotein A1 isoform b
           [Homo sapiens]
          Length = 372

 Score = 72.4 bits (176), Expect = 1e-12
 Identities = 94/378 (24%), Positives = 134/378 (35%), Gaps = 77/378 (20%)

Query: 244 RLFVGSIPKSKTKEQILEEFSKVTEGLTDVILYHQPDDKKKNRGFCFLEY---------- 293
           +LF+G +    T E +   F +    LTD ++   P+ K+ +RGF F+ Y          
Sbjct: 15  KLFIGGLSFETTDESLRSHFEQWGT-LTDCVVMRDPNTKR-SRGFGFVTYATVEEVDAAM 72

Query: 294 --EDHKTAAQV---------------------KVLFVRNLANTVTEEILEKAFSQFGKLE 330
               HK   +V                     K +FV  +     E  L   F Q+GK+E
Sbjct: 73  NARPHKVDGRVVEPKRAVSREDSQRPGAHLTVKKIFVGGIKEDTEEHHLRDYFEQYGKIE 132

Query: 331 RVKKLKD--------YAFIHFDERDGAVKAMEEMNGKDLEGENIEIVFAKPPDQKRKERK 382
            ++ + D        +AF+ FD+ D   K + +     + G N E+  A    +      
Sbjct: 133 VIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQKY-HTVNGHNCEVRKALSKQEMASASS 191

Query: 383 AQRQAAKNQMYDDYYYYGPPHMPPPTRGRGRGGRGGYGYPPDYYGYEDYYDYYGYDYHNY 442
           +QR  + +  +               RG G GG   +G   ++ G        G+     
Sbjct: 192 SQRGRSGSGNFGG------------GRGGGFGGNDNFGRGGNFSGRG------GFGGSRG 233

Query: 443 RGGYEDPYYGYEDF-QVGARGRGGRGARGAAPSRGRGAAPPRGRAGYSQRGGPGSARGVR 501
            GGY     GY  F   G  G GG G  G   SRG G+    G  GY   G  GS  G  
Sbjct: 234 GGGYGGSGDGYNGFGNDGGYGGGGPGYSGG--SRGYGS----GGQGY---GNQGSGYGGS 284

Query: 502 GARGGAQQQRGRGVRGARGGRGGNVGGKRKADGYNQPDSKRRQTNNQNWGSQPIAQQPLQ 561
           G+        G G  G  G   G  G       YN   S        N+G +  +  P  
Sbjct: 285 GSYDSYNNGGGGGFGGGSGSNFGGGGSYNDFGNYNNQSSNFGPMKGGNFGGR--SSGPYG 342

Query: 562 GGDHSGNYGYKSENQEFY 579
           GG   G Y  K  NQ  Y
Sbjct: 343 GG---GQYFAKPRNQGGY 357



 Score = 56.6 bits (135), Expect = 6e-08
 Identities = 44/168 (26%), Positives = 77/168 (45%), Gaps = 26/168 (15%)

Query: 154 SGQQPSVGTEIFVGKIPRDLFEDELVPLFEKAGPIWDLRLMMDPLTGLNRGYAFVTFCTK 213
           S ++P    ++F+G +  +  ++ L   FE+ G + D  +M DP T  +RG+ FVT+ T 
Sbjct: 6   SPKEPEQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATV 65

Query: 214 EAAQEAVKLYNNHEI-----------------RSGKHIGVCISVANNRLFVGSIPKSKTK 256
           E    A+     H++                 R G H+ V       ++FVG I K  T+
Sbjct: 66  EEVDAAMNA-RPHKVDGRVVEPKRAVSREDSQRPGAHLTV------KKIFVGGI-KEDTE 117

Query: 257 EQILEEFSKVTEGLTDVILYHQPDDKKKNRGFCFLEYEDHKTAAQVKV 304
           E  L ++ +   G  +VI         K RGF F+ ++DH +  ++ +
Sbjct: 118 EHHLRDYFE-QYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVI 164



 Score = 55.5 bits (132), Expect = 1e-07
 Identities = 75/308 (24%), Positives = 117/308 (37%), Gaps = 47/308 (15%)

Query: 294 EDHKTAAQVKVLFVRNLANTVTEEILEKAFSQFGKLE--------RVKKLKDYAFIHF-- 343
           E  K   Q++ LF+  L+   T+E L   F Q+G L           K+ + + F+ +  
Sbjct: 5   ESPKEPEQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYAT 64

Query: 344 -DERDGAVKAM-EEMNGKDLEGEN-IEIVFAKPPDQKRKERKA-----QRQAAKNQMYDD 395
            +E D A+ A   +++G+ +E +  +    ++ P      +K      +    ++ + D 
Sbjct: 65  VEEVDAAMNARPHKVDGRVVEPKRAVSREDSQRPGAHLTVKKIFVGGIKEDTEEHHLRDY 124

Query: 396 YYYYGPPHMPPPTRGRGRGGRGGYGYPPDYYGYEDYYD------YYGYDYHNYRGGYEDP 449
           +  YG   +      RG G + G+ +    +   D  D      Y+  + HN        
Sbjct: 125 FEQYGKIEVIEIMTDRGSGKKRGFAFVT--FDDHDSVDKIVIQKYHTVNGHNCEVRKALS 182

Query: 450 YYGYEDFQVGARGRGGRGARGAAPSRGRGAAPPRGRAG-YSQRGGPGSARGVRGARGGAQ 508
                      RGR G G  G     G G     GR G +S RGG G +RG  G  G   
Sbjct: 183 KQEMASASSSQRGRSGSGNFGGGRGGGFGGNDNFGRGGNFSGRGGFGGSRGGGGYGGSGD 242

Query: 509 QQRGRGVRGARGGRG-GNVGGKRKADGYNQPDSKRRQTNNQNWGSQPIAQQPLQGGDHSG 567
              G G  G  GG G G  GG R   GY         +  Q +G+        QG  + G
Sbjct: 243 GYNGFGNDGGYGGGGPGYSGGSR---GYG--------SGGQGYGN--------QGSGYGG 283

Query: 568 NYGYKSEN 575
           +  Y S N
Sbjct: 284 SGSYDSYN 291


  Database: hs.faa
    Posted date:  Aug 4, 2009  4:42 PM
  Number of letters in database: 18,247,518
  Number of sequences in database:  37,866
  
Lambda     K      H
   0.315    0.136    0.406 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 26,494,848
Number of Sequences: 37866
Number of extensions: 1480997
Number of successful extensions: 13675
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 397
Number of HSP's successfully gapped in prelim test: 459
Number of HSP's that attempted gapping in prelim test: 6215
Number of HSP's gapped (non-prelim): 4341
length of query: 588
length of database: 18,247,518
effective HSP length: 108
effective length of query: 480
effective length of database: 14,157,990
effective search space: 6795835200
effective search space used: 6795835200
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 65 (29.6 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.