BLASTP 2.2.11 [Jun-05-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|22749179 NK6 homeobox 3 [Homo sapiens] (135 letters) Database: hs.faa 37,866 sequences; 18,247,518 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|22749179 NK6 homeobox 3 [Homo sapiens] 283 4e-77 gi|111120318 NK6 transcription factor related, locus 1 [Homo sap... 77 3e-15 gi|28912912 NK6 transcription factor related, locus 2 [Homo sapi... 74 3e-14 gi|226437602 NK1 homeobox 2 [Homo sapiens] 42 2e-04 gi|239755439 PREDICTED: NK1 homeobox 2 [Homo sapiens] 42 2e-04 gi|239753784 PREDICTED: NK1 homeobox 1 [Homo sapiens] 42 2e-04 gi|239749920 PREDICTED: NK1 homeobox 2 [Homo sapiens] 42 2e-04 gi|239748344 PREDICTED: NK1 homeobox 1 [Homo sapiens] 42 2e-04 gi|239744223 PREDICTED: NK1 homeobox 2 [Homo sapiens] 42 2e-04 gi|239742243 PREDICTED: HPX-153 homeobox [Homo sapiens] 42 2e-04 gi|46249382 paired-like homeobox 2a [Homo sapiens] 42 2e-04 gi|126116581 retina and anterior neural fold homeobox [Homo sapi... 40 4e-04 gi|89257348 homeo box HB9 [Homo sapiens] 40 4e-04 gi|24497556 homeobox A7 [Homo sapiens] 40 6e-04 gi|122937223 NOBOX oogenesis homeobox [Homo sapiens] 40 6e-04 gi|33457326 GS homeobox 1 [Homo sapiens] 39 0.001 gi|122937321 UNC homeobox [Homo sapiens] 39 0.002 gi|24497544 homeobox C6 isoform 2 [Homo sapiens] 39 0.002 gi|4758554 homeobox C6 isoform 1 [Homo sapiens] 39 0.002 gi|11386181 H2.0-like homeobox [Homo sapiens] 38 0.003 gi|34878836 tripartite motif-containing 55 isoform 1 [Homo sapiens] 38 0.003 gi|34878821 tripartite motif-containing 55 isoform 2 [Homo sapiens] 38 0.003 gi|14249388 retina and anterior neural fold homeobox 2 [Homo sap... 37 0.004 gi|12707580 paired-like homeobox 2b [Homo sapiens] 37 0.005 gi|24497538 homeobox C4 [Homo sapiens] 37 0.006 gi|24497540 homeobox C4 [Homo sapiens] 37 0.006 gi|239750326 PREDICTED: similar to Homeobox protein Hox-C4 [Homo... 37 0.006 gi|85068580 homeobox B7 [Homo sapiens] 36 0.011 gi|13273315 homeobox B4 [Homo sapiens] 36 0.011 gi|239754062 PREDICTED: orthopedia homeobox [Homo sapiens] 35 0.014 >gi|22749179 NK6 homeobox 3 [Homo sapiens] Length = 135 Score = 283 bits (723), Expect = 4e-77 Identities = 135/135 (100%), Positives = 135/135 (100%) Query: 1 MQQGQLAPGSRLCSGPWGLPELQPAAPSSSAAQLPWGESWGEEADTPACLSASGVWFQNR 60 MQQGQLAPGSRLCSGPWGLPELQPAAPSSSAAQLPWGESWGEEADTPACLSASGVWFQNR Sbjct: 1 MQQGQLAPGSRLCSGPWGLPELQPAAPSSSAAQLPWGESWGEEADTPACLSASGVWFQNR 60 Query: 61 RTKWRKKSALEPSSSTPRAPGGAGAGAGGDRAPSENEDDEYNKPLDPDSDDEKIRLLLRK 120 RTKWRKKSALEPSSSTPRAPGGAGAGAGGDRAPSENEDDEYNKPLDPDSDDEKIRLLLRK Sbjct: 61 RTKWRKKSALEPSSSTPRAPGGAGAGAGGDRAPSENEDDEYNKPLDPDSDDEKIRLLLRK 120 Query: 121 HRAAFSVLSLGAHSV 135 HRAAFSVLSLGAHSV Sbjct: 121 HRAAFSVLSLGAHSV 135 >gi|111120318 NK6 transcription factor related, locus 1 [Homo sapiens] Length = 367 Score = 77.4 bits (189), Expect = 3e-15 Identities = 37/70 (52%), Positives = 48/70 (68%), Gaps = 2/70 (2%) Query: 55 VWFQNRRTKWRKKSALEPSSSTPRAPGGAGAGAGGDRAPSENEDDEYNKPLDPDSDDEKI 114 VWFQNRRTKWRKK A E +++ + G +E EDD+YNKPLDP+SDDEKI Sbjct: 282 VWFQNRRTKWRKKHAAEMATAKKKQDSETERLKGASE--NEEEDDDYNKPLDPNSDDEKI 339 Query: 115 RLLLRKHRAA 124 LL+KH+++ Sbjct: 340 TQLLKKHKSS 349 >gi|28912912 NK6 transcription factor related, locus 2 [Homo sapiens] Length = 277 Score = 74.3 bits (181), Expect = 3e-14 Identities = 38/69 (55%), Positives = 47/69 (68%), Gaps = 4/69 (5%) Query: 55 VWFQNRRTKWRKKSALEPSSSTPRAPGGAGA-GAGGDRAPSENEDDEYNKPLDPDSDDEK 113 VWFQNRRTKWRK+ A E +S+ + A GG A +DDEYN+PLDP+SDDEK Sbjct: 194 VWFQNRRTKWRKRHAAEMASAKKKQDSDAEKLKVGGSDA---EDDDEYNRPLDPNSDDEK 250 Query: 114 IRLLLRKHR 122 I LL+KH+ Sbjct: 251 ITRLLKKHK 259 >gi|226437602 NK1 homeobox 2 [Homo sapiens] Length = 310 Score = 41.6 bits (96), Expect = 2e-04 Identities = 20/47 (42%), Positives = 27/47 (57%), Gaps = 8/47 (17%) Query: 55 VWFQNRRTKWRKKS-----ALEPSSSTPR---APGGAGAGAGGDRAP 93 +WFQNRRTKW+K++ A + P+ A GG G G+GG P Sbjct: 209 IWFQNRRTKWKKQNPGADGAAQVGGGAPQPGAAGGGGGGGSGGSPGP 255 >gi|239755439 PREDICTED: NK1 homeobox 2 [Homo sapiens] Length = 332 Score = 41.6 bits (96), Expect = 2e-04 Identities = 20/47 (42%), Positives = 27/47 (57%), Gaps = 8/47 (17%) Query: 55 VWFQNRRTKWRKKS-----ALEPSSSTPR---APGGAGAGAGGDRAP 93 +WFQNRRTKW+K++ A + P+ A GG G G+GG P Sbjct: 231 IWFQNRRTKWKKQNPGADGAAQVGGGAPQPGAAGGGGGGGSGGSPGP 277 >gi|239753784 PREDICTED: NK1 homeobox 1 [Homo sapiens] Length = 814 Score = 41.6 bits (96), Expect = 2e-04 Identities = 17/34 (50%), Positives = 23/34 (67%) Query: 55 VWFQNRRTKWRKKSALEPSSSTPRAPGGAGAGAG 88 +WFQNRRTKW+K++ +S+ GG G GAG Sbjct: 708 IWFQNRRTKWKKQNPGADTSAPTGGGGGPGPGAG 741 >gi|239749920 PREDICTED: NK1 homeobox 2 [Homo sapiens] Length = 332 Score = 41.6 bits (96), Expect = 2e-04 Identities = 20/47 (42%), Positives = 27/47 (57%), Gaps = 8/47 (17%) Query: 55 VWFQNRRTKWRKKS-----ALEPSSSTPR---APGGAGAGAGGDRAP 93 +WFQNRRTKW+K++ A + P+ A GG G G+GG P Sbjct: 231 IWFQNRRTKWKKQNPGADGAAQVGGGAPQPGAAGGGGGGGSGGSPGP 277 >gi|239748344 PREDICTED: NK1 homeobox 1 [Homo sapiens] Length = 653 Score = 41.6 bits (96), Expect = 2e-04 Identities = 17/34 (50%), Positives = 23/34 (67%) Query: 55 VWFQNRRTKWRKKSALEPSSSTPRAPGGAGAGAG 88 +WFQNRRTKW+K++ +S+ GG G GAG Sbjct: 143 IWFQNRRTKWKKQNPGADTSAPTGGGGGPGPGAG 176 >gi|239744223 PREDICTED: NK1 homeobox 2 [Homo sapiens] Length = 332 Score = 41.6 bits (96), Expect = 2e-04 Identities = 20/47 (42%), Positives = 27/47 (57%), Gaps = 8/47 (17%) Query: 55 VWFQNRRTKWRKKS-----ALEPSSSTPR---APGGAGAGAGGDRAP 93 +WFQNRRTKW+K++ A + P+ A GG G G+GG P Sbjct: 231 IWFQNRRTKWKKQNPGADGAAQVGGGAPQPGAAGGGGGGGSGGSPGP 277 >gi|239742243 PREDICTED: HPX-153 homeobox [Homo sapiens] Length = 411 Score = 41.6 bits (96), Expect = 2e-04 Identities = 17/34 (50%), Positives = 23/34 (67%) Query: 55 VWFQNRRTKWRKKSALEPSSSTPRAPGGAGAGAG 88 +WFQNRRTKW+K++ +S+ GG G GAG Sbjct: 305 IWFQNRRTKWKKQNPGADTSAPTGGGGGPGPGAG 338 >gi|46249382 paired-like homeobox 2a [Homo sapiens] Length = 284 Score = 41.6 bits (96), Expect = 2e-04 Identities = 22/46 (47%), Positives = 29/46 (63%), Gaps = 3/46 (6%) Query: 55 VWFQNRRTKWRKKSALEPSSSTPRAPGGAGAGAGGDRAPSENEDDE 100 VWFQNRR K+RK+ E ++S A G AGA G R SE++D + Sbjct: 136 VWFQNRRAKFRKQ---ERAASAKGAAGAAGAKKGEARCSSEDDDSK 178 >gi|126116581 retina and anterior neural fold homeobox [Homo sapiens] Length = 346 Score = 40.4 bits (93), Expect = 4e-04 Identities = 23/54 (42%), Positives = 27/54 (50%), Gaps = 16/54 (29%) Query: 55 VWFQNRRTKWRKKSALEPSS----------------STPRAPGGAGAGAGGDRA 92 VWFQNRR KWR++ LE SS S +P GAG G+GG A Sbjct: 182 VWFQNRRAKWRRQEKLEVSSMKLQDSPLLSFSRSPPSATLSPLGAGPGSGGGPA 235 >gi|89257348 homeo box HB9 [Homo sapiens] Length = 401 Score = 40.4 bits (93), Expect = 4e-04 Identities = 21/46 (45%), Positives = 26/46 (56%), Gaps = 3/46 (6%) Query: 55 VWFQNRRTKW-RKKSALEPSS--STPRAPGGAGAGAGGDRAPSENE 97 +WFQNRR KW R K A E ++ + + GG GAG GG P E Sbjct: 287 IWFQNRRMKWKRSKKAKEQAAQEAEKQKGGGGGAGKGGAEEPGAEE 332 >gi|24497556 homeobox A7 [Homo sapiens] Length = 230 Score = 40.0 bits (92), Expect = 6e-04 Identities = 19/49 (38%), Positives = 28/49 (57%), Gaps = 3/49 (6%) Query: 55 VWFQNRRTKWRKKSALEPSSSTPRAPG---GAGAGAGGDRAPSENEDDE 100 +WFQNRR KW+K+ E ++ G A A A D+A E++D+E Sbjct: 176 IWFQNRRMKWKKEHKDEGPTAAAAPEGAVPSAAATAAADKADEEDDDEE 224 >gi|122937223 NOBOX oogenesis homeobox [Homo sapiens] Length = 490 Score = 40.0 bits (92), Expect = 6e-04 Identities = 30/88 (34%), Positives = 37/88 (42%), Gaps = 7/88 (7%) Query: 55 VWFQNRRTKWRKKSAL--EPSSSTPRAPGGAGAGAGG-----DRAPSENEDDEYNKPLDP 107 VWFQNRR KWRK L + S P APG A + P E + D + + Sbjct: 350 VWFQNRRAKWRKMEKLNGKESKDNPAAPGPASSQCSSAAEILPAVPMEPKPDPFPQESPL 409 Query: 108 DSDDEKIRLLLRKHRAAFSVLSLGAHSV 135 D+ E LL A + S GA V Sbjct: 410 DTFPEPPMLLTSDQTLAPTQPSEGAQRV 437 >gi|33457326 GS homeobox 1 [Homo sapiens] Length = 264 Score = 38.9 bits (89), Expect = 0.001 Identities = 26/72 (36%), Positives = 31/72 (43%), Gaps = 17/72 (23%) Query: 55 VWFQNRRTKWRKKSALEPSSSTPRAPGGAGAGAGG-----------DRAPSENEDDEYNK 103 +WFQNRR K +K E S R GG GAG GG A +DDE Sbjct: 193 IWFQNRRVKHKK----EGKGSNHRGGGGGGAGGGGSAPQGCKCASLSSAKCSEDDDEL-- 246 Query: 104 PLDPDSDDEKIR 115 P+ P S + R Sbjct: 247 PMSPSSSGKDDR 258 >gi|122937321 UNC homeobox [Homo sapiens] Length = 531 Score = 38.5 bits (88), Expect = 0.002 Identities = 36/118 (30%), Positives = 43/118 (36%), Gaps = 3/118 (2%) Query: 17 WGLPELQPAAPSSSAAQLPWGESWGEEADTPACLSASGVWFQNRRTKWRKKSALEPSSST 76 W L EL+ A S + E+ D S VWFQNRR KWRKK + Sbjct: 115 WQLEELEKAFNESHYPDVFMREALALRLDLVE--SRVQVWFQNRRAKWRKKENTKKGPGR 172 Query: 77 PRAPGGAGAGAGGDRAPSENEDDEYNKPLDPDSDDEKIRLLLRKHRAAFSVLSLGAHS 134 P +G P E E K EK +LL + R S L HS Sbjct: 173 PAHNSHPTTCSGEPMDPEEIARKELEKMEKKKRKHEK-KLLKSQGRHLHSPGGLSLHS 229 >gi|24497544 homeobox C6 isoform 2 [Homo sapiens] Length = 153 Score = 38.5 bits (88), Expect = 0.002 Identities = 22/52 (42%), Positives = 28/52 (53%), Gaps = 7/52 (13%) Query: 55 VWFQNRRTKWRKKSALEPSSSTPRAPGGAGAGA---GGDRAPSENEDDEYNK 103 +WFQNRR KW+K+S L + S GG GA A GG E ++E K Sbjct: 105 IWFQNRRMKWKKESNLTSTLS----GGGGGATADSLGGKEEKREETEEEKQK 152 >gi|4758554 homeobox C6 isoform 1 [Homo sapiens] Length = 235 Score = 38.5 bits (88), Expect = 0.002 Identities = 22/52 (42%), Positives = 28/52 (53%), Gaps = 7/52 (13%) Query: 55 VWFQNRRTKWRKKSALEPSSSTPRAPGGAGAGA---GGDRAPSENEDDEYNK 103 +WFQNRR KW+K+S L + S GG GA A GG E ++E K Sbjct: 187 IWFQNRRMKWKKESNLTSTLS----GGGGGATADSLGGKEEKREETEEEKQK 234 >gi|11386181 H2.0-like homeobox [Homo sapiens] Length = 488 Score = 37.7 bits (86), Expect = 0.003 Identities = 21/64 (32%), Positives = 31/64 (48%), Gaps = 7/64 (10%) Query: 55 VWFQNRRTKWR-------KKSALEPSSSTPRAPGGAGAGAGGDRAPSENEDDEYNKPLDP 107 VWFQNRR KWR +K + + P A G +R+PS +E + ++ D Sbjct: 322 VWFQNRRMKWRHSKEAQAQKDKDKEAGEKPSGGAPAADGEQDERSPSRSEGEAESESSDS 381 Query: 108 DSDD 111 +S D Sbjct: 382 ESLD 385 >gi|34878836 tripartite motif-containing 55 isoform 1 [Homo sapiens] Length = 548 Score = 37.7 bits (86), Expect = 0.003 Identities = 31/104 (29%), Positives = 46/104 (44%), Gaps = 12/104 (11%) Query: 5 QLAPGSRLCSGPWGLPELQPA--APSSSAAQLPWGESWGEEADTP---ACLSASGVWFQN 59 Q APG+ S P P L PA AP + +P G E++TP A +A +++ + Sbjct: 385 QAAPGALPVSSPEPPPALPPAADAPVTQGEVVPTGSEQTTESETPVPAAAETADPLFYPS 444 Query: 60 RRTKWRKKSALEPSSSTPRAPGGAGAGAGGDRAPSENEDDEYNK 103 W K + +++ P PG G G G P +ED K Sbjct: 445 ----WYKGQTRKATTNPPCTPGSEGLGQIG---PPGSEDSNVRK 481 >gi|34878821 tripartite motif-containing 55 isoform 2 [Homo sapiens] Length = 540 Score = 37.7 bits (86), Expect = 0.003 Identities = 31/104 (29%), Positives = 46/104 (44%), Gaps = 12/104 (11%) Query: 5 QLAPGSRLCSGPWGLPELQPA--APSSSAAQLPWGESWGEEADTP---ACLSASGVWFQN 59 Q APG+ S P P L PA AP + +P G E++TP A +A +++ + Sbjct: 385 QAAPGALPVSSPEPPPALPPAADAPVTQGEVVPTGSEQTTESETPVPAAAETADPLFYPS 444 Query: 60 RRTKWRKKSALEPSSSTPRAPGGAGAGAGGDRAPSENEDDEYNK 103 W K + +++ P PG G G G P +ED K Sbjct: 445 ----WYKGQTRKATTNPPCTPGSEGLGQIG---PPGSEDSNVRK 481 >gi|14249388 retina and anterior neural fold homeobox 2 [Homo sapiens] Length = 184 Score = 37.4 bits (85), Expect = 0.004 Identities = 15/26 (57%), Positives = 17/26 (65%) Query: 55 VWFQNRRTKWRKKSALEPSSSTPRAP 80 VWFQNRR KWR++ LE S AP Sbjct: 73 VWFQNRRAKWRRQERLESGSGAVAAP 98 >gi|12707580 paired-like homeobox 2b [Homo sapiens] Length = 314 Score = 37.0 bits (84), Expect = 0.005 Identities = 21/56 (37%), Positives = 29/56 (51%), Gaps = 6/56 (10%) Query: 55 VWFQNRRTKWRKKSALEPSSSTPRAPGGAGAGAGGDRAPSENEDDEYN-KPLDPDS 109 VWFQNRR K+RK+ + A A G+ G ++ S +D+ K DPDS Sbjct: 144 VWFQNRRAKFRKQ-----ERAAAAAAAAAKNGSSGKKSDSSRDDESKEAKSTDPDS 194 >gi|24497538 homeobox C4 [Homo sapiens] Length = 264 Score = 36.6 bits (83), Expect = 0.006 Identities = 16/44 (36%), Positives = 20/44 (45%) Query: 55 VWFQNRRTKWRKKSALEPSSSTPRAPGGAGAGAGGDRAPSENED 98 +WFQNRR KW+K L + P GA P +ED Sbjct: 202 IWFQNRRMKWKKDHRLPNTKVRSAPPAGAAPSTLSAATPGTSED 245 >gi|24497540 homeobox C4 [Homo sapiens] Length = 264 Score = 36.6 bits (83), Expect = 0.006 Identities = 16/44 (36%), Positives = 20/44 (45%) Query: 55 VWFQNRRTKWRKKSALEPSSSTPRAPGGAGAGAGGDRAPSENED 98 +WFQNRR KW+K L + P GA P +ED Sbjct: 202 IWFQNRRMKWKKDHRLPNTKVRSAPPAGAAPSTLSAATPGTSED 245 >gi|239750326 PREDICTED: similar to Homeobox protein Hox-C4 [Homo sapiens] Length = 105 Score = 36.6 bits (83), Expect = 0.006 Identities = 16/44 (36%), Positives = 20/44 (45%) Query: 55 VWFQNRRTKWRKKSALEPSSSTPRAPGGAGAGAGGDRAPSENED 98 +WFQNRR KW+K L + P GA P +ED Sbjct: 43 IWFQNRRMKWKKDHRLPNTKVRSAPPAGAAPSTLSAATPGTSED 86 >gi|85068580 homeobox B7 [Homo sapiens] Length = 217 Score = 35.8 bits (81), Expect = 0.011 Identities = 19/47 (40%), Positives = 26/47 (55%), Gaps = 13/47 (27%) Query: 55 VWFQNRRTKWRKKSALEPSSSTPRAPGGAGAG-AGGDRAPSENEDDE 100 +WFQNRR KW+K++ AG G G DRA +E E++E Sbjct: 183 IWFQNRRMKWKKENKT------------AGPGTTGQDRAEAEEEEEE 217 >gi|13273315 homeobox B4 [Homo sapiens] Length = 251 Score = 35.8 bits (81), Expect = 0.011 Identities = 17/35 (48%), Positives = 20/35 (57%), Gaps = 3/35 (8%) Query: 55 VWFQNRRTKWRKKSALEPSSSTPRAPGGAGAGAGG 89 +WFQNRR KW+K L +T GGA AGG Sbjct: 208 IWFQNRRMKWKKDHKL---PNTKIRSGGAAGSAGG 239 >gi|239754062 PREDICTED: orthopedia homeobox [Homo sapiens] Length = 325 Score = 35.4 bits (80), Expect = 0.014 Identities = 21/57 (36%), Positives = 27/57 (47%), Gaps = 12/57 (21%) Query: 55 VWFQNRRTKWRKK----------SALEPSSSTPRAPGGAGAGAG--GDRAPSENEDD 99 VWFQNRR KW+K+ L P+ P+ P A A A GD S + +D Sbjct: 150 VWFQNRRAKWKKRKKTTNVFRAPGTLLPTPGLPQFPSAAAAAAAAMGDSLCSFHAND 206 Database: hs.faa Posted date: Aug 4, 2009 4:42 PM Number of letters in database: 18,247,518 Number of sequences in database: 37,866 Lambda K H 0.310 0.128 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 7,086,712 Number of Sequences: 37866 Number of extensions: 396391 Number of successful extensions: 2838 Number of sequences better than 10.0: 30 Number of HSP's better than 10.0 without gapping: 237 Number of HSP's successfully gapped in prelim test: 157 Number of HSP's that attempted gapping in prelim test: 2418 Number of HSP's gapped (non-prelim): 548 length of query: 135 length of database: 18,247,518 effective HSP length: 91 effective length of query: 44 effective length of database: 14,801,712 effective search space: 651275328 effective search space used: 651275328 T: 11 A: 40 X1: 16 ( 7.1 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 42 (21.7 bits) S2: 56 (26.2 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.