Guide to the Human Genome
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Name: LOC100133511 Sequence: fasta or formatted (1295aa) NCBI GI: 169218213
Description:

PREDICTED: similar to complement component C3, partial

Referenced in:

Complement

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             6.1         79           2
 C cysteine            1.1         14           2
 D aspartate           4.7         61           1
 E glutamate           6.7         87           2
 F phenylalanine       3.6         47           2
 G glycine             6.3         81           3
 H histidine           1.6         21           2
 I isoleucine          4.9         64           2
 K lysine              6.3         81           2
 L leucine            10.0        130           6
 M methionine          2.2         28           1
 N asparagine          3.7         48           3
 P proline             5.4         70           2
 Q glutamine           5.6         72           2
 R arginine            5.2         67           4
 S serine              6.5         84           3
 T threonine           6.4         83           2
 V valine              9.6        124           2
 W tryptophan          0.9         12           1
 Y tyrosine            3.2         42           2
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: similar to complement component C3, part... 
C3                    0.999   complement component 3 precursor 
C5                    0.205   complement component 5 preproprotein 
C4B                   0.197   complement component 4B preproprotein 
C4A                   0.195   complement component 4A preproprotein 
LOC100294156          0.195   PREDICTED: similar to C4A protein isoform 2 
LOC100294156          0.195   PREDICTED: similar to C4A protein isoform 1 
A2ML1                 0.061   alpha-2-macroglobulin-like 1 
CD109                 0.061   CD109 antigen isoform 3 precursor 
CD109                 0.061   CD109 antigen isoform 2 precursor 
CD109                 0.061   CD109 antigen isoform 1 precursor 
A2M                   0.058   alpha-2-macroglobulin precursor 
PZP                   0.057   pregnancy-zone protein 
OVOS2                 0.052   PREDICTED: ovostatin 2 
OVOS                  0.051   PREDICTED: ovostatin 
CPAMD8                0.045   C3 and PZP-like, alpha-2-macroglobulin domain conta...
LOC100292046          0.041   PREDICTED: similar to Complement component 4A (Rodg...
LOC100293534          0.023   PREDICTED: similar to complement component 4B (Chil...
LOC100133592          0.022   PREDICTED: similar to ovostatin-2 
LOC728735             0.017   PREDICTED: similar to Ovostatin homolog 2 
LOC653879             0.009   PREDICTED: similar to complement component 3 
LRRC37A2              0.004   c114 SLIT-like testicular protein 
LOC732434             0.004   PREDICTED: similar to Ovostatin homolog 2 
LOC643677             0.004   hypothetical protein LOC643677 
LOC643677             0.004   PREDICTED: hypothetical protein LOC643677 
LOC643677             0.004   PREDICTED: hypothetical protein LOC643677 
LOC643677             0.004   PREDICTED: hypothetical protein LOC643677 
LOC100288229          0.004   PREDICTED: hypothetical protein XP_002343606 
LOC100294335          0.004   PREDICTED: similar to c114 SLIT-like testicular pro...
LOC100294335          0.004   PREDICTED: similar to c114 SLIT-like testicular pro...
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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