Guide to the Human Genome
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Name: LOC100292046 Sequence: fasta or formatted (270aa) NCBI GI: 239754277
Description:

PREDICTED: similar to Complement component 4A (Rodgers blood group)

Not currently referenced in the text

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             4.1         11           3
 C cysteine            0.7          2           1
 D aspartate           5.9         16           2
 E glutamate           5.2         14           1
 F phenylalanine       4.4         12           2
 G glycine             7.4         20           2
 H histidine           2.2          6           1
 I isoleucine          5.9         16           2
 K lysine              6.3         17           2
 L leucine            10.7         29           2
 M methionine          2.2          6           1
 N asparagine          3.0          8           1
 P proline             5.9         16           1
 Q glutamine           6.3         17           1
 R arginine            5.6         15           2
 S serine              7.8         21           2
 T threonine           4.8         13           2
 V valine              7.0         19           1
 W tryptophan          0.7          2           1
 Y tyrosine            3.7         10           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: similar to Complement component 4A (Rodg... 
LOC100294156          0.977   PREDICTED: similar to C4A protein isoform 2 
LOC100294156          0.977   PREDICTED: similar to C4A protein isoform 1 
C4A                   0.971   complement component 4A preproprotein 
C4B                   0.971   complement component 4B preproprotein 
LOC100133511          0.199   PREDICTED: similar to complement component C3, part...
C3                    0.197   complement component 3 precursor 
C5                    0.154   complement component 5 preproprotein 
PZP                   0.095   pregnancy-zone protein 
A2M                   0.095   alpha-2-macroglobulin precursor 
CD109                 0.091   CD109 antigen isoform 2 precursor 
CD109                 0.091   CD109 antigen isoform 1 precursor 
CPAMD8                0.081   C3 and PZP-like, alpha-2-macroglobulin domain conta...
OVOS                  0.071   PREDICTED: ovostatin 
A2ML1                 0.071   alpha-2-macroglobulin-like 1 
OVOS2                 0.069   PREDICTED: ovostatin 2 
CD109                 0.046   CD109 antigen isoform 3 precursor 
TOMM70A               0.010   translocase of outer mitochondrial membrane 70 homol...
C14orf43              0.008   hypothetical protein LOC91748 
C14orf43              0.008   hypothetical protein LOC91748 
DACT2                 0.006   dapper, antagonist of beta-catenin, homolog 2 [Homo...
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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