Guide to the Human Genome
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Name: LOC100134413 Sequence: fasta or formatted (189aa) NCBI GI: 169217713
Description:

PREDICTED: similar to Ovostatin homolog 2

Not currently referenced in the text

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine            10.1         19           2
 C cysteine            2.6          5           1
 D aspartate           1.6          3           1
 E glutamate           4.8          9           2
 F phenylalanine       4.8          9           1
 G glycine             5.3         10           2
 H histidine           2.1          4           1
 I isoleucine          5.8         11           1
 K lysine              8.5         16           2
 L leucine            11.1         21           2
 M methionine          1.6          3           1
 N asparagine          6.3         12           2
 P proline             4.2          8           1
 Q glutamine           4.8          9           2
 R arginine            3.2          6           1
 S serine              9.5         18           2
 T threonine           4.2          8           1
 V valine              4.8          9           1
 W tryptophan          1.6          3           1
 Y tyrosine            3.2          6           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: similar to Ovostatin homolog 2 
OVOS                  0.725   PREDICTED: ovostatin 
OVOS2                 0.711   PREDICTED: ovostatin 2 
A2M                   0.233   alpha-2-macroglobulin precursor 
PZP                   0.228   pregnancy-zone protein 
A2ML1                 0.143   alpha-2-macroglobulin-like 1 
CD109                 0.062   CD109 antigen isoform 3 precursor 
CD109                 0.062   CD109 antigen isoform 2 precursor 
CD109                 0.062   CD109 antigen isoform 1 precursor 
C5                    0.056   complement component 5 preproprotein 
CPAMD8                0.048   C3 and PZP-like, alpha-2-macroglobulin domain conta...
C3                    0.017   complement component 3 precursor 
LOC100133511          0.017   PREDICTED: similar to complement component C3, part...
SLAMF8                0.017   SLAM family member 8 
C4B                   0.017   complement component 4B preproprotein 
LOC100293534          0.017   PREDICTED: similar to complement component 4B (Chil...
EPN1                  0.014   epsin 1 isoform c 
EPN1                  0.014   epsin 1 isoform b 
EPN1                  0.014   epsin 1 isoform a 
SELE                  0.011   selectin E precursor 
LOC100294156          0.011   PREDICTED: similar to C4A protein isoform 2 
LOC100294156          0.011   PREDICTED: similar to C4A protein isoform 1 
UBAP2                 0.011   ubiquitin associated protein 2 
TMEM62                0.011   transmembrane protein 62 
C4A                   0.008   complement component 4A preproprotein 
EPN2                  0.008   epsin 2 isoform a 
EPN2                  0.008   epsin 2 isoform b 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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