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Search of human proteins with 226528395
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|226528395 short coiled-coil protein isoform 2 [Homo sapiens]
(158 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|226528395 short coiled-coil protein isoform 2 [Homo sapiens] 313 4e-86
gi|226528280 short coiled-coil protein isoform 1 [Homo sapiens] 308 1e-84
gi|226528302 short coiled-coil protein isoform 3 [Homo sapiens] 248 2e-66
gi|226528371 short coiled-coil protein isoform 5 [Homo sapiens] 191 3e-49
gi|226528212 short coiled-coil protein isoform 4 [Homo sapiens] 186 7e-48
gi|226528328 short coiled-coil protein isoform 4 [Homo sapiens] 186 7e-48
gi|226528258 short coiled-coil protein isoform 4 [Homo sapiens] 186 7e-48
gi|226528419 short coiled-coil protein isoform 6 [Homo sapiens] 125 1e-29
gi|41406064 myosin, heavy polypeptide 10, non-muscle [Homo sapiens] 37 0.007
gi|8922940 gamma-taxilin [Homo sapiens] 33 0.10
gi|5031937 calcium binding and coiled-coil domain 2 [Homo sapiens] 33 0.10
gi|116517224 coiled-coil domain containing 144B [Homo sapiens] 33 0.13
gi|12667788 myosin, heavy polypeptide 9, non-muscle [Homo sapiens] 32 0.23
gi|14165274 golgi-associated microtubule-binding protein HOOK3 [... 32 0.23
gi|57768564 hypothetical protein LOC23281 isoform b [Homo sapiens] 32 0.23
gi|45439327 periplakin [Homo sapiens] 32 0.23
gi|140161498 hypothetical protein LOC23281 isoform a [Homo sapiens] 32 0.23
gi|195947367 golgi autoantigen, golgin subfamily a, 8B [Homo sap... 32 0.29
gi|31083099 golgi autoantigen, golgin subfamily a, 8A [Homo sapi... 32 0.29
gi|114155142 nuclear pore complex-associated protein TPR [Homo s... 32 0.29
gi|154354990 ankyrin repeat domain 26 [Homo sapiens] 32 0.29
gi|224586773 hypothetical protein LOC643854 [Homo sapiens] 31 0.38
gi|223468574 vesicle-associated membrane protein 7 isoform 2 [Ho... 31 0.38
gi|5032137 vesicle-associated membrane protein 7 isoform 1 [Homo... 31 0.38
gi|118918413 MICAL C-terminal like [Homo sapiens] 31 0.38
gi|31563507 GRIP and coiled-coil domain-containing 2 [Homo sapiens] 31 0.50
gi|224451082 cytospin A [Homo sapiens] 31 0.50
gi|224451080 cytospin A [Homo sapiens] 31 0.50
gi|31652238 cut-like homeobox 1 isoform c [Homo sapiens] 31 0.50
gi|31652236 cut-like homeobox 1 isoform b [Homo sapiens] 31 0.50
>gi|226528395 short coiled-coil protein isoform 2 [Homo sapiens]
Length = 158
Score = 313 bits (802), Expect = 4e-86
Identities = 158/158 (100%), Positives = 158/158 (100%)
Query: 1 MRRRVFSSQDWRASGWDGMGFFSRRTFCGRSGRSCRGQLVQVSRPEVSAGSLLLPAPQAE 60
MRRRVFSSQDWRASGWDGMGFFSRRTFCGRSGRSCRGQLVQVSRPEVSAGSLLLPAPQAE
Sbjct: 1 MRRRVFSSQDWRASGWDGMGFFSRRTFCGRSGRSCRGQLVQVSRPEVSAGSLLLPAPQAE 60
Query: 61 DHSSRILYPRPKSLLPKMMNADMDVDAENQVELEEKTRLINQVLELQHTLEDLSARVDAV 120
DHSSRILYPRPKSLLPKMMNADMDVDAENQVELEEKTRLINQVLELQHTLEDLSARVDAV
Sbjct: 61 DHSSRILYPRPKSLLPKMMNADMDVDAENQVELEEKTRLINQVLELQHTLEDLSARVDAV 120
Query: 121 KEENLKLKSENQVLGQYIENLMSASSVFQTTDTKSKRK 158
KEENLKLKSENQVLGQYIENLMSASSVFQTTDTKSKRK
Sbjct: 121 KEENLKLKSENQVLGQYIENLMSASSVFQTTDTKSKRK 158
>gi|226528280 short coiled-coil protein isoform 1 [Homo sapiens]
Length = 159
Score = 308 bits (790), Expect = 1e-84
Identities = 158/159 (99%), Positives = 158/159 (99%), Gaps = 1/159 (0%)
Query: 1 MRRRVFSSQDWRASGWDGMGFFSRRTFCGRSGRSCRGQLVQVSRPEVSAGSLLLPAPQAE 60
MRRRVFSSQDWRASGWDGMGFFSRRTFCGRSGRSCRGQLVQVSRPEVSAGSLLLPAPQAE
Sbjct: 1 MRRRVFSSQDWRASGWDGMGFFSRRTFCGRSGRSCRGQLVQVSRPEVSAGSLLLPAPQAE 60
Query: 61 DHSSRILYPRPKSLLPKMMNADMD-VDAENQVELEEKTRLINQVLELQHTLEDLSARVDA 119
DHSSRILYPRPKSLLPKMMNADMD VDAENQVELEEKTRLINQVLELQHTLEDLSARVDA
Sbjct: 61 DHSSRILYPRPKSLLPKMMNADMDAVDAENQVELEEKTRLINQVLELQHTLEDLSARVDA 120
Query: 120 VKEENLKLKSENQVLGQYIENLMSASSVFQTTDTKSKRK 158
VKEENLKLKSENQVLGQYIENLMSASSVFQTTDTKSKRK
Sbjct: 121 VKEENLKLKSENQVLGQYIENLMSASSVFQTTDTKSKRK 159
>gi|226528302 short coiled-coil protein isoform 3 [Homo sapiens]
Length = 131
Score = 248 bits (633), Expect = 2e-66
Identities = 131/158 (82%), Positives = 131/158 (82%), Gaps = 27/158 (17%)
Query: 1 MRRRVFSSQDWRASGWDGMGFFSRRTFCGRSGRSCRGQLVQVSRPEVSAGSLLLPAPQAE 60
MRRRVFSSQDWRASGWDGMGFFSRRTFCGRSGRSCRGQLVQVSRPEVSAGSLLLPAPQAE
Sbjct: 1 MRRRVFSSQDWRASGWDGMGFFSRRTFCGRSGRSCRGQLVQVSRPEVSAGSLLLPAPQAE 60
Query: 61 DHSSRILYPRPKSLLPKMMNADMDVDAENQVELEEKTRLINQVLELQHTLEDLSARVDAV 120
DHSSRILYPRPKSLLPKMMNADMD DLSARVDAV
Sbjct: 61 DHSSRILYPRPKSLLPKMMNADMD---------------------------DLSARVDAV 93
Query: 121 KEENLKLKSENQVLGQYIENLMSASSVFQTTDTKSKRK 158
KEENLKLKSENQVLGQYIENLMSASSVFQTTDTKSKRK
Sbjct: 94 KEENLKLKSENQVLGQYIENLMSASSVFQTTDTKSKRK 131
>gi|226528371 short coiled-coil protein isoform 5 [Homo sapiens]
Length = 121
Score = 191 bits (484), Expect = 3e-49
Identities = 98/98 (100%), Positives = 98/98 (100%)
Query: 61 DHSSRILYPRPKSLLPKMMNADMDVDAENQVELEEKTRLINQVLELQHTLEDLSARVDAV 120
DHSSRILYPRPKSLLPKMMNADMDVDAENQVELEEKTRLINQVLELQHTLEDLSARVDAV
Sbjct: 24 DHSSRILYPRPKSLLPKMMNADMDVDAENQVELEEKTRLINQVLELQHTLEDLSARVDAV 83
Query: 121 KEENLKLKSENQVLGQYIENLMSASSVFQTTDTKSKRK 158
KEENLKLKSENQVLGQYIENLMSASSVFQTTDTKSKRK
Sbjct: 84 KEENLKLKSENQVLGQYIENLMSASSVFQTTDTKSKRK 121
>gi|226528212 short coiled-coil protein isoform 4 [Homo sapiens]
Length = 122
Score = 186 bits (472), Expect = 7e-48
Identities = 98/99 (98%), Positives = 98/99 (98%), Gaps = 1/99 (1%)
Query: 61 DHSSRILYPRPKSLLPKMMNADMD-VDAENQVELEEKTRLINQVLELQHTLEDLSARVDA 119
DHSSRILYPRPKSLLPKMMNADMD VDAENQVELEEKTRLINQVLELQHTLEDLSARVDA
Sbjct: 24 DHSSRILYPRPKSLLPKMMNADMDAVDAENQVELEEKTRLINQVLELQHTLEDLSARVDA 83
Query: 120 VKEENLKLKSENQVLGQYIENLMSASSVFQTTDTKSKRK 158
VKEENLKLKSENQVLGQYIENLMSASSVFQTTDTKSKRK
Sbjct: 84 VKEENLKLKSENQVLGQYIENLMSASSVFQTTDTKSKRK 122
>gi|226528328 short coiled-coil protein isoform 4 [Homo sapiens]
Length = 122
Score = 186 bits (472), Expect = 7e-48
Identities = 98/99 (98%), Positives = 98/99 (98%), Gaps = 1/99 (1%)
Query: 61 DHSSRILYPRPKSLLPKMMNADMD-VDAENQVELEEKTRLINQVLELQHTLEDLSARVDA 119
DHSSRILYPRPKSLLPKMMNADMD VDAENQVELEEKTRLINQVLELQHTLEDLSARVDA
Sbjct: 24 DHSSRILYPRPKSLLPKMMNADMDAVDAENQVELEEKTRLINQVLELQHTLEDLSARVDA 83
Query: 120 VKEENLKLKSENQVLGQYIENLMSASSVFQTTDTKSKRK 158
VKEENLKLKSENQVLGQYIENLMSASSVFQTTDTKSKRK
Sbjct: 84 VKEENLKLKSENQVLGQYIENLMSASSVFQTTDTKSKRK 122
>gi|226528258 short coiled-coil protein isoform 4 [Homo sapiens]
Length = 122
Score = 186 bits (472), Expect = 7e-48
Identities = 98/99 (98%), Positives = 98/99 (98%), Gaps = 1/99 (1%)
Query: 61 DHSSRILYPRPKSLLPKMMNADMD-VDAENQVELEEKTRLINQVLELQHTLEDLSARVDA 119
DHSSRILYPRPKSLLPKMMNADMD VDAENQVELEEKTRLINQVLELQHTLEDLSARVDA
Sbjct: 24 DHSSRILYPRPKSLLPKMMNADMDAVDAENQVELEEKTRLINQVLELQHTLEDLSARVDA 83
Query: 120 VKEENLKLKSENQVLGQYIENLMSASSVFQTTDTKSKRK 158
VKEENLKLKSENQVLGQYIENLMSASSVFQTTDTKSKRK
Sbjct: 84 VKEENLKLKSENQVLGQYIENLMSASSVFQTTDTKSKRK 122
>gi|226528419 short coiled-coil protein isoform 6 [Homo sapiens]
Length = 94
Score = 125 bits (315), Expect = 1e-29
Identities = 71/98 (72%), Positives = 71/98 (72%), Gaps = 27/98 (27%)
Query: 61 DHSSRILYPRPKSLLPKMMNADMDVDAENQVELEEKTRLINQVLELQHTLEDLSARVDAV 120
DHSSRILYPRPKSLLPKMMNADMD DLSARVDAV
Sbjct: 24 DHSSRILYPRPKSLLPKMMNADMD---------------------------DLSARVDAV 56
Query: 121 KEENLKLKSENQVLGQYIENLMSASSVFQTTDTKSKRK 158
KEENLKLKSENQVLGQYIENLMSASSVFQTTDTKSKRK
Sbjct: 57 KEENLKLKSENQVLGQYIENLMSASSVFQTTDTKSKRK 94
>gi|41406064 myosin, heavy polypeptide 10, non-muscle [Homo sapiens]
Length = 1976
Score = 37.0 bits (84), Expect = 0.007
Identities = 21/70 (30%), Positives = 42/70 (60%), Gaps = 3/70 (4%)
Query: 72 KSLLPKMMNADMDVDAENQVELEEKTRLINQVLELQHTLEDLSARVDAVKEENLKLKSEN 131
K++L + + A+ ++ AE + E + RL + EL+ L DL +RV+ +E N L++E
Sbjct: 889 KNILAEQLQAETELFAEAE---EMRARLAAKKQELEEILHDLESRVEEEEERNQILQNEK 945
Query: 132 QVLGQYIENL 141
+ + +I++L
Sbjct: 946 KKMQAHIQDL 955
Score = 28.5 bits (62), Expect = 2.5
Identities = 23/80 (28%), Positives = 37/80 (46%), Gaps = 9/80 (11%)
Query: 88 ENQVELEEKTR--LINQVLELQHTLEDLSARVD-------AVKEENLKLKSENQVLGQYI 138
+ Q E EE+ R L QVL LQ L D +VD +++E KL + + L Q +
Sbjct: 1349 QEQQEEEEEARKNLEKQVLALQSQLADTKKKVDDDLGTIESLEEAKKKLLKDAEALSQRL 1408
Query: 139 ENLMSASSVFQTTDTKSKRK 158
E A + T + +++
Sbjct: 1409 EEKALAYDKLEKTKNRLQQE 1428
>gi|8922940 gamma-taxilin [Homo sapiens]
Length = 528
Score = 33.1 bits (74), Expect = 0.10
Identities = 24/84 (28%), Positives = 43/84 (51%), Gaps = 2/84 (2%)
Query: 61 DHSSRILY-PRPKSLLPKMMNADMDVDAEN-QVELEEKTRLINQVLELQHTLEDLSARVD 118
+HS IL + +SL ++ + + EN Q EE+ R Q TL+++ A+++
Sbjct: 197 EHSKAILARSKLESLCRELQRHNKTLKEENMQQAREEEERRKEATAHFQITLDEIQAQLE 256
Query: 119 AVKEENLKLKSENQVLGQYIENLM 142
N KL+ EN LG+ ++ L+
Sbjct: 257 QHDIHNAKLRQENIELGEKLKKLI 280
>gi|5031937 calcium binding and coiled-coil domain 2 [Homo sapiens]
Length = 446
Score = 33.1 bits (74), Expect = 0.10
Identities = 20/69 (28%), Positives = 37/69 (53%), Gaps = 2/69 (2%)
Query: 80 NADMDVDAENQVELEEKTRLINQVLELQ--HTLEDLSARVDAVKEENLKLKSENQVLGQY 137
N+DM + + + E E + IN+ LEL+ + + +KE+N K+ SEN+ +G
Sbjct: 170 NSDMQAELQKKQEELETLQSINKKLELKVKEQKDYWETELLQLKEQNQKMSSENEKMGIR 229
Query: 138 IENLMSASS 146
++ L + S
Sbjct: 230 VDQLQAQLS 238
>gi|116517224 coiled-coil domain containing 144B [Homo sapiens]
Length = 725
Score = 32.7 bits (73), Expect = 0.13
Identities = 25/74 (33%), Positives = 35/74 (47%), Gaps = 12/74 (16%)
Query: 72 KSLLPKMMNADM---DVDAENQVELEEKTRLINQVLELQHTLEDLSARVDAVKEENLKLK 128
KSL PK+ N D D ++V L E ELQ ++ V+ ++EE L LK
Sbjct: 467 KSLKPKLENLSSLPPDSDRTSEVYLHE---------ELQQDMQKFKNEVNTLEEEFLALK 517
Query: 129 SENQVLGQYIENLM 142
EN L + +E M
Sbjct: 518 KENVQLHKEVEEEM 531
>gi|12667788 myosin, heavy polypeptide 9, non-muscle [Homo sapiens]
Length = 1960
Score = 32.0 bits (71), Expect = 0.23
Identities = 28/104 (26%), Positives = 54/104 (51%), Gaps = 8/104 (7%)
Query: 38 QLVQVSRPEVSAGSLLLPAPQAEDHSSRILYPRPKSLLPKMMNADMDVDAENQVELEEKT 97
+LV+V +++A + L + E S+++ K L + + A+ ++ AE + E +
Sbjct: 853 ELVKVREKQLAAENRLT---EMETLQSQLM--AEKLQLQEQLQAETELCAEAE---ELRA 904
Query: 98 RLINQVLELQHTLEDLSARVDAVKEENLKLKSENQVLGQYIENL 141
RL + EL+ DL ARV+ +E L++E + + Q I+ L
Sbjct: 905 RLTAKKQELEEICHDLEARVEEEEERCQHLQAEKKKMQQNIQEL 948
>gi|14165274 golgi-associated microtubule-binding protein HOOK3
[Homo sapiens]
Length = 718
Score = 32.0 bits (71), Expect = 0.23
Identities = 21/78 (26%), Positives = 38/78 (48%), Gaps = 3/78 (3%)
Query: 80 NADMDVDAENQVELEEKTRLINQVLELQHTLEDLSARVDAVKEENLKLKSENQVLGQYIE 139
+A +D+D + + EE ++ E+ +L +V A++EE L +ENQVL +E
Sbjct: 169 DAYVDLDRQLKKTTEELNEALSAKEEIAQRCHELDMQVAALQEEKSSLLAENQVL---ME 225
Query: 140 NLMSASSVFQTTDTKSKR 157
L + S+ +R
Sbjct: 226 RLNQSDSIEDPNSPAGRR 243
Score = 29.3 bits (64), Expect = 1.5
Identities = 24/90 (26%), Positives = 41/90 (45%), Gaps = 25/90 (27%)
Query: 77 KMMNADMDVDAENQVELEEKTRLIN-----------QVLELQHTLED------------- 112
K++ + +N V LEE+ R N QV+ELQ+ L +
Sbjct: 338 KLLEEKNTMYMQNTVSLEEELRKANAARSQLETYKRQVVELQNRLSEESKKADKLDFEYK 397
Query: 113 -LSARVDAVKEENLKLKSENQVLGQYIENL 141
L +VD++++E +L++E L + IE L
Sbjct: 398 RLKEKVDSLQKEKDRLRTERDSLKETIEEL 427
Score = 26.9 bits (58), Expect = 7.3
Identities = 21/66 (31%), Positives = 36/66 (54%), Gaps = 15/66 (22%)
Query: 92 ELEEKTRLINQVL--------ELQHTLEDLSARVDAVKEENLKLKSENQVLGQYIENLMS 143
ELE + RL+NQ L ELQ +L+D ++ E+++ LK + L +++E L
Sbjct: 505 ELETENRLVNQRLLEVQSQVEELQKSLQDQGSKA----EDSVLLKKK---LEEHLEKLHE 557
Query: 144 ASSVFQ 149
A++ Q
Sbjct: 558 ANNELQ 563
>gi|57768564 hypothetical protein LOC23281 isoform b [Homo sapiens]
Length = 348
Score = 32.0 bits (71), Expect = 0.23
Identities = 22/53 (41%), Positives = 29/53 (54%), Gaps = 6/53 (11%)
Query: 87 AENQVELEEKTRLINQVLELQHTLEDLSARVDAVKEENLKLKSENQVLGQYIE 139
AE + LEEK QVL+ Q+ EDL AR+D +L EN L +Y+E
Sbjct: 246 AEKNIILEEKI----QVLQQQN--EDLKARIDQNTVVTRQLSEENANLQEYVE 292
Score = 29.3 bits (64), Expect = 1.5
Identities = 21/76 (27%), Positives = 37/76 (48%), Gaps = 4/76 (5%)
Query: 70 RPKSLLPKMMNADMDVDAENQVELEEKTRLINQVLELQ----HTLEDLSARVDAVKEENL 125
R + L K +++ LEE + + QVLE++ H E ++ + E+N+
Sbjct: 191 RFEEALRKNTEEQLEIALAPYQHLEEDMKSLKQVLEMKNQQIHEQEKKILELEKLAEKNI 250
Query: 126 KLKSENQVLGQYIENL 141
L+ + QVL Q E+L
Sbjct: 251 ILEEKIQVLQQQNEDL 266
>gi|45439327 periplakin [Homo sapiens]
Length = 1756
Score = 32.0 bits (71), Expect = 0.23
Identities = 32/122 (26%), Positives = 54/122 (44%), Gaps = 8/122 (6%)
Query: 36 RGQLVQVSRPEVSAGSLLLPAPQAEDHSSRILYPRPKSLLPKMMNADMDVDAENQVELEE 95
R +L + + EV +L + Q E + R KS L + + ++D E
Sbjct: 1484 RRKLAALEKAEVKEKVVLSESVQVEKGDTEQEIQRLKSSLEEESRSKRELDVE------- 1536
Query: 96 KTRLINQVLELQHTLEDLSARVDAVKEENLKLKSENQVLGQYIENLMSASSVFQTTDTKS 155
+RL ++ EL+ S +D ++EEN KL+ E Q L L S ++ T+T+
Sbjct: 1537 VSRLEARLSELEFHNSKSSKELDFLREENHKLQLERQNLQLETRRLQSEINM-AATETRD 1595
Query: 156 KR 157
R
Sbjct: 1596 LR 1597
>gi|140161498 hypothetical protein LOC23281 isoform a [Homo sapiens]
Length = 1379
Score = 32.0 bits (71), Expect = 0.23
Identities = 22/53 (41%), Positives = 29/53 (54%), Gaps = 6/53 (11%)
Query: 87 AENQVELEEKTRLINQVLELQHTLEDLSARVDAVKEENLKLKSENQVLGQYIE 139
AE + LEEK QVL+ Q+ EDL AR+D +L EN L +Y+E
Sbjct: 1277 AEKNIILEEKI----QVLQQQN--EDLKARIDQNTVVTRQLSEENANLQEYVE 1323
Score = 29.3 bits (64), Expect = 1.5
Identities = 21/76 (27%), Positives = 37/76 (48%), Gaps = 4/76 (5%)
Query: 70 RPKSLLPKMMNADMDVDAENQVELEEKTRLINQVLELQ----HTLEDLSARVDAVKEENL 125
R + L K +++ LEE + + QVLE++ H E ++ + E+N+
Sbjct: 1222 RFEEALRKNTEEQLEIALAPYQHLEEDMKSLKQVLEMKNQQIHEQEKKILELEKLAEKNI 1281
Query: 126 KLKSENQVLGQYIENL 141
L+ + QVL Q E+L
Sbjct: 1282 ILEEKIQVLQQQNEDL 1297
>gi|195947367 golgi autoantigen, golgin subfamily a, 8B [Homo
sapiens]
Length = 603
Score = 31.6 bits (70), Expect = 0.29
Identities = 18/57 (31%), Positives = 29/57 (50%)
Query: 88 ENQVELEEKTRLINQVLELQHTLEDLSARVDAVKEENLKLKSENQVLGQYIENLMSA 144
E Q L E+ + + Q+ E Q LE+L + + ++K + LGQ +E L SA
Sbjct: 344 EQQERLREREKRLQQLAEPQSDLEELKHENKSALQLEQQVKELQEKLGQVMETLTSA 400
>gi|31083099 golgi autoantigen, golgin subfamily a, 8A [Homo
sapiens]
Length = 603
Score = 31.6 bits (70), Expect = 0.29
Identities = 18/57 (31%), Positives = 29/57 (50%)
Query: 88 ENQVELEEKTRLINQVLELQHTLEDLSARVDAVKEENLKLKSENQVLGQYIENLMSA 144
E Q L E+ + + Q+ E Q LE+L + + ++K + LGQ +E L SA
Sbjct: 344 EQQERLREREKRLQQLAEPQSDLEELKHENKSALQLEQQVKELQEKLGQVMETLTSA 400
>gi|114155142 nuclear pore complex-associated protein TPR [Homo
sapiens]
Length = 2363
Score = 31.6 bits (70), Expect = 0.29
Identities = 14/43 (32%), Positives = 29/43 (67%)
Query: 101 NQVLELQHTLEDLSARVDAVKEENLKLKSENQVLGQYIENLMS 143
N++LEL+ LE+ V ++E+ LK+ N+ L +++E+L++
Sbjct: 217 NEILELKCNLENKKEEVSRLEEQMNGLKTSNEHLQKHVEDLLT 259
>gi|154354990 ankyrin repeat domain 26 [Homo sapiens]
Length = 1710
Score = 31.6 bits (70), Expect = 0.29
Identities = 17/57 (29%), Positives = 33/57 (57%), Gaps = 3/57 (5%)
Query: 102 QVLELQHTLEDLSARVDAVKEENLKLKSENQVLGQYIENLMSASSVFQTTDTKSKRK 158
Q+ +L+H ++DL+A ++ + L L ++NQ+L E L+S +V + + K K
Sbjct: 1398 QINKLKHKIDDLTAELETAGSKCLHLDTKNQILQ---EELLSMKTVQKKCEKLQKNK 1451
>gi|224586773 hypothetical protein LOC643854 [Homo sapiens]
Length = 777
Score = 31.2 bits (69), Expect = 0.38
Identities = 28/99 (28%), Positives = 48/99 (48%), Gaps = 19/99 (19%)
Query: 71 PKSLLPKMMNADMDVDAENQVELE----EKTRLINQVLELQHTLEDLSARVD-------A 119
PK L K+++A A+ V L+ E+ +I Q+ E+ T E+L+ + +
Sbjct: 311 PKGALKKLIHA-----AKLNVSLKSLEGERNHIIIQLSEVDKTKEELTEHIKNLQTQQAS 365
Query: 120 VKEENLKLKSENQVLGQYIENLMSASSVFQTTDTKSKRK 158
++ EN+ +SENQ L Q L + +Q + K RK
Sbjct: 366 LQSENIYFESENQKLQQ---KLKIMTEFYQENEMKLYRK 401
>gi|223468574 vesicle-associated membrane protein 7 isoform 2 [Homo
sapiens]
Length = 179
Score = 31.2 bits (69), Expect = 0.38
Identities = 22/92 (23%), Positives = 45/92 (48%), Gaps = 8/92 (8%)
Query: 70 RPKSLLPKMMNADMDVDAENQVELEEKTRLINQVLELQHTLEDLSA----RVDAVKEENL 125
R ++ LP MN++ Q++ + + +++V+E Q +++L +D V +
Sbjct: 52 RAQTALPYAMNSEFSSVLAAQLKHHSENKGLDKVMETQAQVDELKGIMVRNIDLVAQRGE 111
Query: 126 KLKSENQVLGQYIENLMSASSVFQTTDTKSKR 157
+L ++L ENL+ +S F+TT R
Sbjct: 112 RL----ELLIDKTENLVDSSVTFKTTSRNLAR 139
>gi|5032137 vesicle-associated membrane protein 7 isoform 1 [Homo
sapiens]
Length = 220
Score = 31.2 bits (69), Expect = 0.38
Identities = 22/92 (23%), Positives = 45/92 (48%), Gaps = 8/92 (8%)
Query: 70 RPKSLLPKMMNADMDVDAENQVELEEKTRLINQVLELQHTLEDLSA----RVDAVKEENL 125
R ++ LP MN++ Q++ + + +++V+E Q +++L +D V +
Sbjct: 93 RAQTALPYAMNSEFSSVLAAQLKHHSENKGLDKVMETQAQVDELKGIMVRNIDLVAQRGE 152
Query: 126 KLKSENQVLGQYIENLMSASSVFQTTDTKSKR 157
+L ++L ENL+ +S F+TT R
Sbjct: 153 RL----ELLIDKTENLVDSSVTFKTTSRNLAR 180
>gi|118918413 MICAL C-terminal like [Homo sapiens]
Length = 695
Score = 31.2 bits (69), Expect = 0.38
Identities = 21/81 (25%), Positives = 42/81 (51%), Gaps = 10/81 (12%)
Query: 58 QAEDHSSRILYPRPKSLLPKMMNADMDVDAENQVELEEKTRLINQVLELQHTLEDLSARV 117
+ EDH SR+ + L KM+ + D ++ E +E + QV+E + L V
Sbjct: 615 ELEDHQSRL----EQKLREKMLKEESQKDEKDLNEEQEVFTELMQVIEQRDKL------V 664
Query: 118 DAVKEENLKLKSENQVLGQYI 138
D+++E+ ++ K+E+Q ++
Sbjct: 665 DSLEEQRIREKAEDQHFESFV 685
>gi|31563507 GRIP and coiled-coil domain-containing 2 [Homo sapiens]
Length = 1684
Score = 30.8 bits (68), Expect = 0.50
Identities = 21/56 (37%), Positives = 32/56 (57%), Gaps = 3/56 (5%)
Query: 88 ENQVELEEKTRLINQVLELQHTLEDLSARVDAVKEENLKLKSENQVLGQYIENLMS 143
+N +LE +L+ Q+ L E LSA V ++ EEN KL SE + L + +E +S
Sbjct: 661 QNDQKLE---KLMVQMKVLSEDKEVLSAEVKSLYEENNKLSSEKKQLSRDLEVFLS 713
Score = 26.9 bits (58), Expect = 7.3
Identities = 18/63 (28%), Positives = 30/63 (47%)
Query: 94 EEKTRLINQVLELQHTLEDLSARVDAVKEENLKLKSENQVLGQYIENLMSASSVFQTTDT 153
+EK L ++ E+Q E L + + +K N K + ENQ L +E + S + +
Sbjct: 838 QEKVLLRKELEEIQSEKEALQSDLLEMKNANEKTRLENQNLLIQVEEVSQTCSKSEIHNE 897
Query: 154 KSK 156
K K
Sbjct: 898 KEK 900
>gi|224451082 cytospin A [Homo sapiens]
Length = 1117
Score = 30.8 bits (68), Expect = 0.50
Identities = 20/70 (28%), Positives = 38/70 (54%), Gaps = 2/70 (2%)
Query: 87 AENQVELEEKTRLINQVLELQHTLEDLSARVDAVKEENLKLKSENQVLGQYIENLMSASS 146
+E + E++T + +Q +++ TL L + A++EE +LK+EN++L + L S
Sbjct: 220 SEGDEKSEKETIMAHQPTDVESTLLQLQEQNTAIREELNQLKNENRMLKDRLNAL--GFS 277
Query: 147 VFQTTDTKSK 156
+ Q D K
Sbjct: 278 LEQRLDNSEK 287
>gi|224451080 cytospin A [Homo sapiens]
Length = 1117
Score = 30.8 bits (68), Expect = 0.50
Identities = 20/70 (28%), Positives = 38/70 (54%), Gaps = 2/70 (2%)
Query: 87 AENQVELEEKTRLINQVLELQHTLEDLSARVDAVKEENLKLKSENQVLGQYIENLMSASS 146
+E + E++T + +Q +++ TL L + A++EE +LK+EN++L + L S
Sbjct: 220 SEGDEKSEKETIMAHQPTDVESTLLQLQEQNTAIREELNQLKNENRMLKDRLNAL--GFS 277
Query: 147 VFQTTDTKSK 156
+ Q D K
Sbjct: 278 LEQRLDNSEK 287
>gi|31652238 cut-like homeobox 1 isoform c [Homo sapiens]
Length = 676
Score = 30.8 bits (68), Expect = 0.50
Identities = 19/51 (37%), Positives = 30/51 (58%), Gaps = 7/51 (13%)
Query: 87 AENQVELEEKTRLINQVLELQHTLEDLSARVDAVKEENLKLKSENQVLGQY 137
A NQ ELE + RL QHTL+ L + +D+++ +N+KL + + L Y
Sbjct: 512 ARNQ-ELEAENRLA------QHTLQALQSELDSLRADNIKLFEKIKFLQSY 555
>gi|31652236 cut-like homeobox 1 isoform b [Homo sapiens]
Length = 678
Score = 30.8 bits (68), Expect = 0.50
Identities = 19/51 (37%), Positives = 30/51 (58%), Gaps = 7/51 (13%)
Query: 87 AENQVELEEKTRLINQVLELQHTLEDLSARVDAVKEENLKLKSENQVLGQY 137
A NQ ELE + RL QHTL+ L + +D+++ +N+KL + + L Y
Sbjct: 514 ARNQ-ELEAENRLA------QHTLQALQSELDSLRADNIKLFEKIKFLQSY 557
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.315 0.129 0.363
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,499,050
Number of Sequences: 37866
Number of extensions: 241361
Number of successful extensions: 1689
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 71
Number of HSP's successfully gapped in prelim test: 92
Number of HSP's that attempted gapping in prelim test: 1449
Number of HSP's gapped (non-prelim): 324
length of query: 158
length of database: 18,247,518
effective HSP length: 94
effective length of query: 64
effective length of database: 14,688,114
effective search space: 940039296
effective search space used: 940039296
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 57 (26.6 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.