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Search of human proteins with 226528280
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|226528280 short coiled-coil protein isoform 1 [Homo sapiens]
(159 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|226528280 short coiled-coil protein isoform 1 [Homo sapiens] 315 1e-86
gi|226528395 short coiled-coil protein isoform 2 [Homo sapiens] 308 1e-84
gi|226528302 short coiled-coil protein isoform 3 [Homo sapiens] 248 2e-66
gi|226528212 short coiled-coil protein isoform 4 [Homo sapiens] 192 1e-49
gi|226528328 short coiled-coil protein isoform 4 [Homo sapiens] 192 1e-49
gi|226528258 short coiled-coil protein isoform 4 [Homo sapiens] 192 1e-49
gi|226528371 short coiled-coil protein isoform 5 [Homo sapiens] 186 7e-48
gi|226528419 short coiled-coil protein isoform 6 [Homo sapiens] 125 2e-29
gi|50897852 coiled-coil domain containing 88A isoform 2 [Homo sa... 33 0.079
gi|208022632 coiled-coil domain containing 88A isoform 1 [Homo s... 33 0.079
gi|4757876 bone marrow stromal cell antigen 2 [Homo sapiens] 33 0.13
gi|41406064 myosin, heavy polypeptide 10, non-muscle [Homo sapiens] 33 0.13
gi|8922940 gamma-taxilin [Homo sapiens] 32 0.18
gi|57768564 hypothetical protein LOC23281 isoform b [Homo sapiens] 32 0.23
gi|5031937 calcium binding and coiled-coil domain 2 [Homo sapiens] 32 0.23
gi|140161498 hypothetical protein LOC23281 isoform a [Homo sapiens] 32 0.23
gi|195947367 golgi autoantigen, golgin subfamily a, 8B [Homo sap... 32 0.30
gi|31083099 golgi autoantigen, golgin subfamily a, 8A [Homo sapi... 32 0.30
gi|31652238 cut-like homeobox 1 isoform c [Homo sapiens] 32 0.30
gi|31652236 cut-like homeobox 1 isoform b [Homo sapiens] 32 0.30
gi|7705415 hook homolog 1 [Homo sapiens] 32 0.30
gi|114155142 nuclear pore complex-associated protein TPR [Homo s... 32 0.30
gi|154354990 ankyrin repeat domain 26 [Homo sapiens] 32 0.30
gi|222537714 taxilin beta [Homo sapiens] 31 0.39
gi|153945715 myosin VC [Homo sapiens] 31 0.39
gi|31563507 GRIP and coiled-coil domain-containing 2 [Homo sapiens] 31 0.51
gi|224451082 cytospin A [Homo sapiens] 31 0.51
gi|224451080 cytospin A [Homo sapiens] 31 0.51
gi|224586773 hypothetical protein LOC643854 [Homo sapiens] 31 0.51
gi|75750474 spectrin domain with coiled-coils 1 NSP5a3b [Homo sa... 31 0.51
>gi|226528280 short coiled-coil protein isoform 1 [Homo sapiens]
Length = 159
Score = 315 bits (806), Expect = 1e-86
Identities = 159/159 (100%), Positives = 159/159 (100%)
Query: 1 MRRRVFSSQDWRASGWDGMGFFSRRTFCGRSGRSCRGQLVQVSRPEVSAGSLLLPAPQAE 60
MRRRVFSSQDWRASGWDGMGFFSRRTFCGRSGRSCRGQLVQVSRPEVSAGSLLLPAPQAE
Sbjct: 1 MRRRVFSSQDWRASGWDGMGFFSRRTFCGRSGRSCRGQLVQVSRPEVSAGSLLLPAPQAE 60
Query: 61 DHSSRILYPRPKSLLPKMMNADMDAVDAENQVELEEKTRLINQVLELQHTLEDLSARVDA 120
DHSSRILYPRPKSLLPKMMNADMDAVDAENQVELEEKTRLINQVLELQHTLEDLSARVDA
Sbjct: 61 DHSSRILYPRPKSLLPKMMNADMDAVDAENQVELEEKTRLINQVLELQHTLEDLSARVDA 120
Query: 121 VKEENLKLKSENQVLGQYIENLMSASSVFQTTDTKSKRK 159
VKEENLKLKSENQVLGQYIENLMSASSVFQTTDTKSKRK
Sbjct: 121 VKEENLKLKSENQVLGQYIENLMSASSVFQTTDTKSKRK 159
>gi|226528395 short coiled-coil protein isoform 2 [Homo sapiens]
Length = 158
Score = 308 bits (790), Expect = 1e-84
Identities = 158/159 (99%), Positives = 158/159 (99%), Gaps = 1/159 (0%)
Query: 1 MRRRVFSSQDWRASGWDGMGFFSRRTFCGRSGRSCRGQLVQVSRPEVSAGSLLLPAPQAE 60
MRRRVFSSQDWRASGWDGMGFFSRRTFCGRSGRSCRGQLVQVSRPEVSAGSLLLPAPQAE
Sbjct: 1 MRRRVFSSQDWRASGWDGMGFFSRRTFCGRSGRSCRGQLVQVSRPEVSAGSLLLPAPQAE 60
Query: 61 DHSSRILYPRPKSLLPKMMNADMDAVDAENQVELEEKTRLINQVLELQHTLEDLSARVDA 120
DHSSRILYPRPKSLLPKMMNADMD VDAENQVELEEKTRLINQVLELQHTLEDLSARVDA
Sbjct: 61 DHSSRILYPRPKSLLPKMMNADMD-VDAENQVELEEKTRLINQVLELQHTLEDLSARVDA 119
Query: 121 VKEENLKLKSENQVLGQYIENLMSASSVFQTTDTKSKRK 159
VKEENLKLKSENQVLGQYIENLMSASSVFQTTDTKSKRK
Sbjct: 120 VKEENLKLKSENQVLGQYIENLMSASSVFQTTDTKSKRK 158
>gi|226528302 short coiled-coil protein isoform 3 [Homo sapiens]
Length = 131
Score = 248 bits (632), Expect = 2e-66
Identities = 131/159 (82%), Positives = 131/159 (82%), Gaps = 28/159 (17%)
Query: 1 MRRRVFSSQDWRASGWDGMGFFSRRTFCGRSGRSCRGQLVQVSRPEVSAGSLLLPAPQAE 60
MRRRVFSSQDWRASGWDGMGFFSRRTFCGRSGRSCRGQLVQVSRPEVSAGSLLLPAPQAE
Sbjct: 1 MRRRVFSSQDWRASGWDGMGFFSRRTFCGRSGRSCRGQLVQVSRPEVSAGSLLLPAPQAE 60
Query: 61 DHSSRILYPRPKSLLPKMMNADMDAVDAENQVELEEKTRLINQVLELQHTLEDLSARVDA 120
DHSSRILYPRPKSLLPKMMNADMD DLSARVDA
Sbjct: 61 DHSSRILYPRPKSLLPKMMNADMD----------------------------DLSARVDA 92
Query: 121 VKEENLKLKSENQVLGQYIENLMSASSVFQTTDTKSKRK 159
VKEENLKLKSENQVLGQYIENLMSASSVFQTTDTKSKRK
Sbjct: 93 VKEENLKLKSENQVLGQYIENLMSASSVFQTTDTKSKRK 131
>gi|226528212 short coiled-coil protein isoform 4 [Homo sapiens]
Length = 122
Score = 192 bits (488), Expect = 1e-49
Identities = 99/99 (100%), Positives = 99/99 (100%)
Query: 61 DHSSRILYPRPKSLLPKMMNADMDAVDAENQVELEEKTRLINQVLELQHTLEDLSARVDA 120
DHSSRILYPRPKSLLPKMMNADMDAVDAENQVELEEKTRLINQVLELQHTLEDLSARVDA
Sbjct: 24 DHSSRILYPRPKSLLPKMMNADMDAVDAENQVELEEKTRLINQVLELQHTLEDLSARVDA 83
Query: 121 VKEENLKLKSENQVLGQYIENLMSASSVFQTTDTKSKRK 159
VKEENLKLKSENQVLGQYIENLMSASSVFQTTDTKSKRK
Sbjct: 84 VKEENLKLKSENQVLGQYIENLMSASSVFQTTDTKSKRK 122
>gi|226528328 short coiled-coil protein isoform 4 [Homo sapiens]
Length = 122
Score = 192 bits (488), Expect = 1e-49
Identities = 99/99 (100%), Positives = 99/99 (100%)
Query: 61 DHSSRILYPRPKSLLPKMMNADMDAVDAENQVELEEKTRLINQVLELQHTLEDLSARVDA 120
DHSSRILYPRPKSLLPKMMNADMDAVDAENQVELEEKTRLINQVLELQHTLEDLSARVDA
Sbjct: 24 DHSSRILYPRPKSLLPKMMNADMDAVDAENQVELEEKTRLINQVLELQHTLEDLSARVDA 83
Query: 121 VKEENLKLKSENQVLGQYIENLMSASSVFQTTDTKSKRK 159
VKEENLKLKSENQVLGQYIENLMSASSVFQTTDTKSKRK
Sbjct: 84 VKEENLKLKSENQVLGQYIENLMSASSVFQTTDTKSKRK 122
>gi|226528258 short coiled-coil protein isoform 4 [Homo sapiens]
Length = 122
Score = 192 bits (488), Expect = 1e-49
Identities = 99/99 (100%), Positives = 99/99 (100%)
Query: 61 DHSSRILYPRPKSLLPKMMNADMDAVDAENQVELEEKTRLINQVLELQHTLEDLSARVDA 120
DHSSRILYPRPKSLLPKMMNADMDAVDAENQVELEEKTRLINQVLELQHTLEDLSARVDA
Sbjct: 24 DHSSRILYPRPKSLLPKMMNADMDAVDAENQVELEEKTRLINQVLELQHTLEDLSARVDA 83
Query: 121 VKEENLKLKSENQVLGQYIENLMSASSVFQTTDTKSKRK 159
VKEENLKLKSENQVLGQYIENLMSASSVFQTTDTKSKRK
Sbjct: 84 VKEENLKLKSENQVLGQYIENLMSASSVFQTTDTKSKRK 122
>gi|226528371 short coiled-coil protein isoform 5 [Homo sapiens]
Length = 121
Score = 186 bits (472), Expect = 7e-48
Identities = 98/99 (98%), Positives = 98/99 (98%), Gaps = 1/99 (1%)
Query: 61 DHSSRILYPRPKSLLPKMMNADMDAVDAENQVELEEKTRLINQVLELQHTLEDLSARVDA 120
DHSSRILYPRPKSLLPKMMNADMD VDAENQVELEEKTRLINQVLELQHTLEDLSARVDA
Sbjct: 24 DHSSRILYPRPKSLLPKMMNADMD-VDAENQVELEEKTRLINQVLELQHTLEDLSARVDA 82
Query: 121 VKEENLKLKSENQVLGQYIENLMSASSVFQTTDTKSKRK 159
VKEENLKLKSENQVLGQYIENLMSASSVFQTTDTKSKRK
Sbjct: 83 VKEENLKLKSENQVLGQYIENLMSASSVFQTTDTKSKRK 121
>gi|226528419 short coiled-coil protein isoform 6 [Homo sapiens]
Length = 94
Score = 125 bits (314), Expect = 2e-29
Identities = 71/99 (71%), Positives = 71/99 (71%), Gaps = 28/99 (28%)
Query: 61 DHSSRILYPRPKSLLPKMMNADMDAVDAENQVELEEKTRLINQVLELQHTLEDLSARVDA 120
DHSSRILYPRPKSLLPKMMNADMD DLSARVDA
Sbjct: 24 DHSSRILYPRPKSLLPKMMNADMD----------------------------DLSARVDA 55
Query: 121 VKEENLKLKSENQVLGQYIENLMSASSVFQTTDTKSKRK 159
VKEENLKLKSENQVLGQYIENLMSASSVFQTTDTKSKRK
Sbjct: 56 VKEENLKLKSENQVLGQYIENLMSASSVFQTTDTKSKRK 94
>gi|50897852 coiled-coil domain containing 88A isoform 2 [Homo
sapiens]
Length = 1843
Score = 33.5 bits (75), Expect = 0.079
Identities = 19/64 (29%), Positives = 42/64 (65%), Gaps = 4/64 (6%)
Query: 83 MDAVDAENQVELEEKTRLINQVLELQHTLEDLSARVDAVKEENLKLKSENQVLGQYIENL 142
++A++ EN ELE + R + + L+ + ++L+ +++++++EN +L EN L + +E+L
Sbjct: 658 IEALEQENS-ELERENRKLKKTLD---SFKNLTFQLESLEKENSQLDEENLELRRNVESL 713
Query: 143 MSAS 146
AS
Sbjct: 714 KCAS 717
Score = 29.6 bits (65), Expect = 1.1
Identities = 15/51 (29%), Positives = 29/51 (56%)
Query: 107 LQHTLEDLSARVDAVKEENLKLKSENQVLGQYIENLMSASSVFQTTDTKSK 157
LQ TLE+ + ++ ++ E L+ ENQ L + +E L +S + + ++K
Sbjct: 768 LQKTLENSNKKIQQLESELQDLEMENQTLQKNLEELKISSKRLEQLEKENK 818
Score = 29.3 bits (64), Expect = 1.5
Identities = 18/70 (25%), Positives = 35/70 (50%), Gaps = 1/70 (1%)
Query: 77 KMMNADMDAVDAENQVELEEKTRLINQVLELQHTLEDLSARVDAVKEENLKLKSENQVLG 136
+M ++DA+ E V +++ +++ E H +E ARV+ +KE+N L +L
Sbjct: 306 RMYRDELDAL-REKAVRVDKLESEVSRYKERLHDIEFYKARVEELKEDNQVLLETKTMLE 364
Query: 137 QYIENLMSAS 146
+E + S
Sbjct: 365 DQLEGTRARS 374
Score = 27.3 bits (59), Expect = 5.6
Identities = 19/94 (20%), Positives = 44/94 (46%), Gaps = 4/94 (4%)
Query: 58 QAEDHSSRILYPRPKSLLPKMMNADMDAVDAENQVELEE----KTRLINQVLELQHTLED 113
++++ + +L + + + + NA + A + +L++ L Q+L LQ
Sbjct: 1033 ESQETTRELLKVKDRLIEVERNNATLQAEKQALKTQLKQLETQNNNLQAQILALQRQTVS 1092
Query: 114 LSARVDAVKEENLKLKSENQVLGQYIENLMSASS 147
L + ++ +N KL+ EN L +LM+ ++
Sbjct: 1093 LQEQNTTLQTQNAKLQVENSTLNSQSTSLMNQNA 1126
>gi|208022632 coiled-coil domain containing 88A isoform 1 [Homo
sapiens]
Length = 1870
Score = 33.5 bits (75), Expect = 0.079
Identities = 19/64 (29%), Positives = 42/64 (65%), Gaps = 4/64 (6%)
Query: 83 MDAVDAENQVELEEKTRLINQVLELQHTLEDLSARVDAVKEENLKLKSENQVLGQYIENL 142
++A++ EN ELE + R + + L+ + ++L+ +++++++EN +L EN L + +E+L
Sbjct: 658 IEALEQENS-ELERENRKLKKTLD---SFKNLTFQLESLEKENSQLDEENLELRRNVESL 713
Query: 143 MSAS 146
AS
Sbjct: 714 KCAS 717
Score = 29.6 bits (65), Expect = 1.1
Identities = 15/51 (29%), Positives = 29/51 (56%)
Query: 107 LQHTLEDLSARVDAVKEENLKLKSENQVLGQYIENLMSASSVFQTTDTKSK 157
LQ TLE+ + ++ ++ E L+ ENQ L + +E L +S + + ++K
Sbjct: 768 LQKTLENSNKKIQQLESELQDLEMENQTLQKNLEELKISSKRLEQLEKENK 818
Score = 29.3 bits (64), Expect = 1.5
Identities = 18/70 (25%), Positives = 35/70 (50%), Gaps = 1/70 (1%)
Query: 77 KMMNADMDAVDAENQVELEEKTRLINQVLELQHTLEDLSARVDAVKEENLKLKSENQVLG 136
+M ++DA+ E V +++ +++ E H +E ARV+ +KE+N L +L
Sbjct: 306 RMYRDELDAL-REKAVRVDKLESEVSRYKERLHDIEFYKARVEELKEDNQVLLETKTMLE 364
Query: 137 QYIENLMSAS 146
+E + S
Sbjct: 365 DQLEGTRARS 374
Score = 27.3 bits (59), Expect = 5.6
Identities = 19/94 (20%), Positives = 44/94 (46%), Gaps = 4/94 (4%)
Query: 58 QAEDHSSRILYPRPKSLLPKMMNADMDAVDAENQVELEE----KTRLINQVLELQHTLED 113
++++ + +L + + + + NA + A + +L++ L Q+L LQ
Sbjct: 1032 ESQETTRELLKVKDRLIEVERNNATLQAEKQALKTQLKQLETQNNNLQAQILALQRQTVS 1091
Query: 114 LSARVDAVKEENLKLKSENQVLGQYIENLMSASS 147
L + ++ +N KL+ EN L +LM+ ++
Sbjct: 1092 LQEQNTTLQTQNAKLQVENSTLNSQSTSLMNQNA 1125
>gi|4757876 bone marrow stromal cell antigen 2 [Homo sapiens]
Length = 180
Score = 32.7 bits (73), Expect = 0.13
Identities = 17/45 (37%), Positives = 27/45 (60%), Gaps = 3/45 (6%)
Query: 81 ADMDAVDAENQVELEEKTRLINQVLELQHTLEDLSARVDAVKEEN 125
A +DA A+ Q ++EE L ++ L H L+D SA V+ ++ EN
Sbjct: 100 ASLDAEKAQGQKKVEE---LEGEITTLNHKLQDASAEVERLRREN 141
>gi|41406064 myosin, heavy polypeptide 10, non-muscle [Homo sapiens]
Length = 1976
Score = 32.7 bits (73), Expect = 0.13
Identities = 21/72 (29%), Positives = 41/72 (56%), Gaps = 6/72 (8%)
Query: 72 KSLLPKMMNADMDA-VDAENQVELEEKTRLINQVLELQHTLEDLSARVDAVKEENLKLKS 130
K++L + + A+ + +AE E + RL + EL+ L DL +RV+ +E N L++
Sbjct: 889 KNILAEQLQAETELFAEAE-----EMRARLAAKKQELEEILHDLESRVEEEEERNQILQN 943
Query: 131 ENQVLGQYIENL 142
E + + +I++L
Sbjct: 944 EKKKMQAHIQDL 955
Score = 30.4 bits (67), Expect = 0.67
Identities = 20/90 (22%), Positives = 41/90 (45%), Gaps = 7/90 (7%)
Query: 77 KMMNADMDAVDAENQVELEEKTRLINQVLELQHTLEDLSARVD-------AVKEENLKLK 129
+ + + +++ + + E E + L QVL LQ L D +VD +++E KL
Sbjct: 1339 RQLEEEKNSLQEQQEEEEEARKNLEKQVLALQSQLADTKKKVDDDLGTIESLEEAKKKLL 1398
Query: 130 SENQVLGQYIENLMSASSVFQTTDTKSKRK 159
+ + L Q +E A + T + +++
Sbjct: 1399 KDAEALSQRLEEKALAYDKLEKTKNRLQQE 1428
>gi|8922940 gamma-taxilin [Homo sapiens]
Length = 528
Score = 32.3 bits (72), Expect = 0.18
Identities = 23/84 (27%), Positives = 39/84 (46%), Gaps = 1/84 (1%)
Query: 61 DHSSRILYPRPKSLLPKMMNADMDAVDAEN-QVELEEKTRLINQVLELQHTLEDLSARVD 119
+HS IL L + + + EN Q EE+ R Q TL+++ A+++
Sbjct: 197 EHSKAILARSKLESLCRELQRHNKTLKEENMQQAREEEERRKEATAHFQITLDEIQAQLE 256
Query: 120 AVKEENLKLKSENQVLGQYIENLM 143
N KL+ EN LG+ ++ L+
Sbjct: 257 QHDIHNAKLRQENIELGEKLKKLI 280
>gi|57768564 hypothetical protein LOC23281 isoform b [Homo sapiens]
Length = 348
Score = 32.0 bits (71), Expect = 0.23
Identities = 22/53 (41%), Positives = 29/53 (54%), Gaps = 6/53 (11%)
Query: 88 AENQVELEEKTRLINQVLELQHTLEDLSARVDAVKEENLKLKSENQVLGQYIE 140
AE + LEEK QVL+ Q+ EDL AR+D +L EN L +Y+E
Sbjct: 246 AEKNIILEEKI----QVLQQQN--EDLKARIDQNTVVTRQLSEENANLQEYVE 292
Score = 28.5 bits (62), Expect = 2.5
Identities = 18/53 (33%), Positives = 30/53 (56%), Gaps = 4/53 (7%)
Query: 94 LEEKTRLINQVLELQ----HTLEDLSARVDAVKEENLKLKSENQVLGQYIENL 142
LEE + + QVLE++ H E ++ + E+N+ L+ + QVL Q E+L
Sbjct: 214 LEEDMKSLKQVLEMKNQQIHEQEKKILELEKLAEKNIILEEKIQVLQQQNEDL 266
>gi|5031937 calcium binding and coiled-coil domain 2 [Homo sapiens]
Length = 446
Score = 32.0 bits (71), Expect = 0.23
Identities = 23/70 (32%), Positives = 38/70 (54%), Gaps = 3/70 (4%)
Query: 80 NADMDAVDAENQVELEEKTRLINQVLELQ--HTLEDLSARVDAVKEENLKLKSENQVLGQ 137
N+DM A + Q ELE + IN+ LEL+ + + +KE+N K+ SEN+ +G
Sbjct: 170 NSDMQAELQKKQEELET-LQSINKKLELKVKEQKDYWETELLQLKEQNQKMSSENEKMGI 228
Query: 138 YIENLMSASS 147
++ L + S
Sbjct: 229 RVDQLQAQLS 238
>gi|140161498 hypothetical protein LOC23281 isoform a [Homo sapiens]
Length = 1379
Score = 32.0 bits (71), Expect = 0.23
Identities = 22/53 (41%), Positives = 29/53 (54%), Gaps = 6/53 (11%)
Query: 88 AENQVELEEKTRLINQVLELQHTLEDLSARVDAVKEENLKLKSENQVLGQYIE 140
AE + LEEK QVL+ Q+ EDL AR+D +L EN L +Y+E
Sbjct: 1277 AEKNIILEEKI----QVLQQQN--EDLKARIDQNTVVTRQLSEENANLQEYVE 1323
Score = 28.5 bits (62), Expect = 2.5
Identities = 18/53 (33%), Positives = 30/53 (56%), Gaps = 4/53 (7%)
Query: 94 LEEKTRLINQVLELQ----HTLEDLSARVDAVKEENLKLKSENQVLGQYIENL 142
LEE + + QVLE++ H E ++ + E+N+ L+ + QVL Q E+L
Sbjct: 1245 LEEDMKSLKQVLEMKNQQIHEQEKKILELEKLAEKNIILEEKIQVLQQQNEDL 1297
>gi|195947367 golgi autoantigen, golgin subfamily a, 8B [Homo
sapiens]
Length = 603
Score = 31.6 bits (70), Expect = 0.30
Identities = 18/57 (31%), Positives = 29/57 (50%)
Query: 89 ENQVELEEKTRLINQVLELQHTLEDLSARVDAVKEENLKLKSENQVLGQYIENLMSA 145
E Q L E+ + + Q+ E Q LE+L + + ++K + LGQ +E L SA
Sbjct: 344 EQQERLREREKRLQQLAEPQSDLEELKHENKSALQLEQQVKELQEKLGQVMETLTSA 400
>gi|31083099 golgi autoantigen, golgin subfamily a, 8A [Homo
sapiens]
Length = 603
Score = 31.6 bits (70), Expect = 0.30
Identities = 18/57 (31%), Positives = 29/57 (50%)
Query: 89 ENQVELEEKTRLINQVLELQHTLEDLSARVDAVKEENLKLKSENQVLGQYIENLMSA 145
E Q L E+ + + Q+ E Q LE+L + + ++K + LGQ +E L SA
Sbjct: 344 EQQERLREREKRLQQLAEPQSDLEELKHENKSALQLEQQVKELQEKLGQVMETLTSA 400
>gi|31652238 cut-like homeobox 1 isoform c [Homo sapiens]
Length = 676
Score = 31.6 bits (70), Expect = 0.30
Identities = 20/64 (31%), Positives = 36/64 (56%), Gaps = 7/64 (10%)
Query: 75 LPKMMNADMDAVDAENQVELEEKTRLINQVLELQHTLEDLSARVDAVKEENLKLKSENQV 134
L ++++ + A NQ ELE + RL QHTL+ L + +D+++ +N+KL + +
Sbjct: 499 LLSIISSQRERFRARNQ-ELEAENRLA------QHTLQALQSELDSLRADNIKLFEKIKF 551
Query: 135 LGQY 138
L Y
Sbjct: 552 LQSY 555
>gi|31652236 cut-like homeobox 1 isoform b [Homo sapiens]
Length = 678
Score = 31.6 bits (70), Expect = 0.30
Identities = 20/64 (31%), Positives = 36/64 (56%), Gaps = 7/64 (10%)
Query: 75 LPKMMNADMDAVDAENQVELEEKTRLINQVLELQHTLEDLSARVDAVKEENLKLKSENQV 134
L ++++ + A NQ ELE + RL QHTL+ L + +D+++ +N+KL + +
Sbjct: 501 LLSIISSQRERFRARNQ-ELEAENRLA------QHTLQALQSELDSLRADNIKLFEKIKF 553
Query: 135 LGQY 138
L Y
Sbjct: 554 LQSY 557
>gi|7705415 hook homolog 1 [Homo sapiens]
Length = 728
Score = 31.6 bits (70), Expect = 0.30
Identities = 17/71 (23%), Positives = 37/71 (52%)
Query: 72 KSLLPKMMNADMDAVDAENQVELEEKTRLINQVLELQHTLEDLSARVDAVKEENLKLKSE 131
K +L N + ++ + + LEE + + EL+ E+L +V +++E L SE
Sbjct: 162 KEILSSPPNDAVGELEQQLKRALEELQEALAEKEELRQRCEELDMQVTTLQDEKNSLVSE 221
Query: 132 NQVLGQYIENL 142
N+++ + ++ L
Sbjct: 222 NEMMNEKLDQL 232
>gi|114155142 nuclear pore complex-associated protein TPR [Homo
sapiens]
Length = 2363
Score = 31.6 bits (70), Expect = 0.30
Identities = 14/43 (32%), Positives = 29/43 (67%)
Query: 102 NQVLELQHTLEDLSARVDAVKEENLKLKSENQVLGQYIENLMS 144
N++LEL+ LE+ V ++E+ LK+ N+ L +++E+L++
Sbjct: 217 NEILELKCNLENKKEEVSRLEEQMNGLKTSNEHLQKHVEDLLT 259
Score = 29.6 bits (65), Expect = 1.1
Identities = 16/70 (22%), Positives = 34/70 (48%), Gaps = 4/70 (5%)
Query: 92 VELEEKTRLINQVLEL----QHTLEDLSARVDAVKEENLKLKSENQVLGQYIENLMSASS 147
++++EK + I QV ++ + E+L A+ D V E + + ++Q ++ +
Sbjct: 1422 IDIQEKVKTITQVKKIGRRYKTQYEELKAQQDKVMETSAQSSGDHQEQHVSVQEMQELKE 1481
Query: 148 VFQTTDTKSK 157
+TKSK
Sbjct: 1482 TLNQAETKSK 1491
Score = 26.9 bits (58), Expect = 7.4
Identities = 17/89 (19%), Positives = 43/89 (48%), Gaps = 4/89 (4%)
Query: 61 DHSSRILYPRPKSLLPKMMNADMDAVDAENQVELEEKTRLINQVLE----LQHTLEDLSA 116
+ +R+L+ + + L K++ + + V V L E+ + Q+LE ++ E
Sbjct: 1153 EKQNRLLHDQIEKLSDKVVASVKEGVQGPLNVSLSEEGKSQEQILEILRFIRREKEIAET 1212
Query: 117 RVDAVKEENLKLKSENQVLGQYIENLMSA 145
R + + E+L+ + ++L + ++ L +
Sbjct: 1213 RFEVAQVESLRYRQRVELLERELQELQDS 1241
>gi|154354990 ankyrin repeat domain 26 [Homo sapiens]
Length = 1710
Score = 31.6 bits (70), Expect = 0.30
Identities = 17/57 (29%), Positives = 33/57 (57%), Gaps = 3/57 (5%)
Query: 103 QVLELQHTLEDLSARVDAVKEENLKLKSENQVLGQYIENLMSASSVFQTTDTKSKRK 159
Q+ +L+H ++DL+A ++ + L L ++NQ+L E L+S +V + + K K
Sbjct: 1398 QINKLKHKIDDLTAELETAGSKCLHLDTKNQILQ---EELLSMKTVQKKCEKLQKNK 1451
>gi|222537714 taxilin beta [Homo sapiens]
Length = 684
Score = 31.2 bits (69), Expect = 0.39
Identities = 21/88 (23%), Positives = 40/88 (45%), Gaps = 2/88 (2%)
Query: 58 QAEDHSSRILYPRPK--SLLPKMMNADMDAVDAENQVELEEKTRLINQVLELQHTLEDLS 115
Q + SR + R K SL ++ + + Q EE+ + Q TL D+
Sbjct: 199 QLQGEHSRAILARSKLESLCRELQRHNKTLKEEALQRAREEEEKRKEITSHFQSTLTDIQ 258
Query: 116 ARVDAVKEENLKLKSENQVLGQYIENLM 143
+++ E N+KL EN L + +++++
Sbjct: 259 GQIEQQSERNMKLCQENTELAEKLKSII 286
>gi|153945715 myosin VC [Homo sapiens]
Length = 1742
Score = 31.2 bits (69), Expect = 0.39
Identities = 12/47 (25%), Positives = 27/47 (57%)
Query: 85 AVDAENQVELEEKTRLINQVLELQHTLEDLSARVDAVKEENLKLKSE 131
A++A+N++ +EK +LI+++ E+Q + L + + E + E
Sbjct: 1263 ALEAQNEIHTKEKEKLIDKIQEMQEASDHLKKQFETESEVKCNFRQE 1309
>gi|31563507 GRIP and coiled-coil domain-containing 2 [Homo sapiens]
Length = 1684
Score = 30.8 bits (68), Expect = 0.51
Identities = 21/56 (37%), Positives = 32/56 (57%), Gaps = 3/56 (5%)
Query: 89 ENQVELEEKTRLINQVLELQHTLEDLSARVDAVKEENLKLKSENQVLGQYIENLMS 144
+N +LE +L+ Q+ L E LSA V ++ EEN KL SE + L + +E +S
Sbjct: 661 QNDQKLE---KLMVQMKVLSEDKEVLSAEVKSLYEENNKLSSEKKQLSRDLEVFLS 713
Score = 26.9 bits (58), Expect = 7.4
Identities = 18/63 (28%), Positives = 30/63 (47%)
Query: 95 EEKTRLINQVLELQHTLEDLSARVDAVKEENLKLKSENQVLGQYIENLMSASSVFQTTDT 154
+EK L ++ E+Q E L + + +K N K + ENQ L +E + S + +
Sbjct: 838 QEKVLLRKELEEIQSEKEALQSDLLEMKNANEKTRLENQNLLIQVEEVSQTCSKSEIHNE 897
Query: 155 KSK 157
K K
Sbjct: 898 KEK 900
>gi|224451082 cytospin A [Homo sapiens]
Length = 1117
Score = 30.8 bits (68), Expect = 0.51
Identities = 20/70 (28%), Positives = 38/70 (54%), Gaps = 2/70 (2%)
Query: 88 AENQVELEEKTRLINQVLELQHTLEDLSARVDAVKEENLKLKSENQVLGQYIENLMSASS 147
+E + E++T + +Q +++ TL L + A++EE +LK+EN++L + L S
Sbjct: 220 SEGDEKSEKETIMAHQPTDVESTLLQLQEQNTAIREELNQLKNENRMLKDRLNAL--GFS 277
Query: 148 VFQTTDTKSK 157
+ Q D K
Sbjct: 278 LEQRLDNSEK 287
>gi|224451080 cytospin A [Homo sapiens]
Length = 1117
Score = 30.8 bits (68), Expect = 0.51
Identities = 20/70 (28%), Positives = 38/70 (54%), Gaps = 2/70 (2%)
Query: 88 AENQVELEEKTRLINQVLELQHTLEDLSARVDAVKEENLKLKSENQVLGQYIENLMSASS 147
+E + E++T + +Q +++ TL L + A++EE +LK+EN++L + L S
Sbjct: 220 SEGDEKSEKETIMAHQPTDVESTLLQLQEQNTAIREELNQLKNENRMLKDRLNAL--GFS 277
Query: 148 VFQTTDTKSK 157
+ Q D K
Sbjct: 278 LEQRLDNSEK 287
>gi|224586773 hypothetical protein LOC643854 [Homo sapiens]
Length = 777
Score = 30.8 bits (68), Expect = 0.51
Identities = 28/97 (28%), Positives = 48/97 (49%), Gaps = 14/97 (14%)
Query: 71 PKSLLPKMMNADMDAVDAENQVELE-EKTRLINQVLELQHTLEDLSARVD-------AVK 122
PK L K+++A V ++ LE E+ +I Q+ E+ T E+L+ + +++
Sbjct: 311 PKGALKKLIHAAKLNVSLKS---LEGERNHIIIQLSEVDKTKEELTEHIKNLQTQQASLQ 367
Query: 123 EENLKLKSENQVLGQYIENLMSASSVFQTTDTKSKRK 159
EN+ +SENQ L Q L + +Q + K RK
Sbjct: 368 SENIYFESENQKLQQ---KLKIMTEFYQENEMKLYRK 401
>gi|75750474 spectrin domain with coiled-coils 1 NSP5a3b [Homo
sapiens]
Length = 987
Score = 30.8 bits (68), Expect = 0.51
Identities = 30/102 (29%), Positives = 49/102 (48%), Gaps = 18/102 (17%)
Query: 68 YPRPKSL-LPKMMNADMDAVDAENQVELE------EKTRLINQVLELQH--------TLE 112
+ R K L + + + + V+ ENQ LE E+ +N+ LEL+ TLE
Sbjct: 398 FEREKLLNIQQQLTCSLRKVEEENQGALEMIKRLKEENEKLNEFLELERHNNNMMAKTLE 457
Query: 113 DLSARVDAVKEENLKLKSENQVLGQYIENLMSASSVFQTTDT 154
+ ++ +K EN LKS Q G+ + AS+V QT ++
Sbjct: 458 ECRVTLEGLKMENGSLKSHLQ--GEK-QKATEASAVEQTAES 496
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.315 0.129 0.362
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,491,548
Number of Sequences: 37866
Number of extensions: 238637
Number of successful extensions: 1695
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 83
Number of HSP's successfully gapped in prelim test: 99
Number of HSP's that attempted gapping in prelim test: 1406
Number of HSP's gapped (non-prelim): 389
length of query: 159
length of database: 18,247,518
effective HSP length: 94
effective length of query: 65
effective length of database: 14,688,114
effective search space: 954727410
effective search space used: 954727410
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 57 (26.6 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.