Guide to the Human Genome
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Search of human proteins with 226442736

BLASTP 2.2.11 [Jun-05-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|226442736 ring finger protein 222 [Homo sapiens]
         (220 letters)

Database: hs.faa 
           37,866 sequences; 18,247,518 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|226442736 ring finger protein 222 [Homo sapiens]                   444   e-125
gi|239745703 PREDICTED: ring finger protein 222 [Homo sapiens]        444   e-125
gi|239756718 PREDICTED: ring finger protein 222 [Homo sapiens]        441   e-124
gi|239751213 PREDICTED: ring finger protein 222 [Homo sapiens]        441   e-124
gi|169214080 PREDICTED: hypothetical protein LOC646862 [Homo sap...    50   2e-06
gi|169214500 PREDICTED: hypothetical protein LOC646862 [Homo sap...    50   2e-06
gi|169213453 PREDICTED: hypothetical protein LOC646862 [Homo sap...    50   2e-06
gi|153252110 ring finger protein 183 [Homo sapiens]                    49   3e-06
gi|239752655 PREDICTED: hypothetical protein [Homo sapiens]            46   2e-05
gi|239747208 PREDICTED: hypothetical protein [Homo sapiens]            46   2e-05
gi|239740999 PREDICTED: hypothetical protein [Homo sapiens]            46   2e-05
gi|153791514 tripartite motif-containing 32 [Homo sapiens]             46   2e-05
gi|153792582 tripartite motif-containing 32 [Homo sapiens]             46   2e-05
gi|30023818 tripartite motif protein 50A [Homo sapiens]                45   6e-05
gi|153791360 ret finger protein-like 4B [Homo sapiens]                 45   6e-05
gi|22749455 ring finger protein 182 [Homo sapiens]                     44   8e-05
gi|38524612 tripartite motif-containing 74 [Homo sapiens]              44   1e-04
gi|65285121 tripartite motif-containing 73 [Homo sapiens]              44   1e-04
gi|56605981 tripartite motif-containing 72 [Homo sapiens]              43   2e-04
gi|111548666 SNF2 histone linker PHD RING helicase isoform a [Ho...    43   2e-04
gi|27436873 SNF2 histone linker PHD RING helicase isoform b [Hom...    43   2e-04
gi|221139764 PHD and ring finger domains 1 [Homo sapiens]              42   3e-04
gi|150010572 SH3 domain containing ring finger 3 [Homo sapiens]        42   3e-04
gi|222446607 SH3 domain containing ring finger 2 [Homo sapiens]        42   5e-04
gi|47717106 zinc finger, FYVE domain containing 9 isoform 3 [Hom...    42   5e-04
gi|27436877 tripartite motif-containing 59 [Homo sapiens]              42   5e-04
gi|194248081 tripartite motif-containing 2 isoform 2 [Homo sapiens]    41   7e-04
gi|194248079 tripartite motif-containing 2 isoform 1 [Homo sapiens]    41   7e-04
gi|94536782 tripartite motif-containing 35 isoform 2 [Homo sapiens]    41   7e-04
gi|223890259 midline 2 isoform 2 [Homo sapiens]                        40   0.001

>gi|226442736 ring finger protein 222 [Homo sapiens]
          Length = 220

 Score =  444 bits (1141), Expect = e-125
 Identities = 220/220 (100%), Positives = 220/220 (100%)

Query: 1   MSEGESKDSSGSECPVCYEKFRDLEGASRTLSCGHVFCHDCLVKYLLSTRVDGQVQRTLV 60
           MSEGESKDSSGSECPVCYEKFRDLEGASRTLSCGHVFCHDCLVKYLLSTRVDGQVQRTLV
Sbjct: 1   MSEGESKDSSGSECPVCYEKFRDLEGASRTLSCGHVFCHDCLVKYLLSTRVDGQVQRTLV 60

Query: 61  CPICRYVTFLSKKSSRWPSMLDKSSQTLAVPVGLPSVPPLDSLGHTNPLAASSPAWRPPP 120
           CPICRYVTFLSKKSSRWPSMLDKSSQTLAVPVGLPSVPPLDSLGHTNPLAASSPAWRPPP
Sbjct: 61  CPICRYVTFLSKKSSRWPSMLDKSSQTLAVPVGLPSVPPLDSLGHTNPLAASSPAWRPPP 120

Query: 121 GQARPPGSPGQSAQLPLDLLPSLPRESQIFVISRHGMPLGEQDSVLPRRSLAELSEASLA 180
           GQARPPGSPGQSAQLPLDLLPSLPRESQIFVISRHGMPLGEQDSVLPRRSLAELSEASLA
Sbjct: 121 GQARPPGSPGQSAQLPLDLLPSLPRESQIFVISRHGMPLGEQDSVLPRRSLAELSEASLA 180

Query: 181 PRSARAFCCRSRALLLITLIAVVAVVAAILPWVLLVRKQA 220
           PRSARAFCCRSRALLLITLIAVVAVVAAILPWVLLVRKQA
Sbjct: 181 PRSARAFCCRSRALLLITLIAVVAVVAAILPWVLLVRKQA 220


>gi|239745703 PREDICTED: ring finger protein 222 [Homo sapiens]
          Length = 220

 Score =  444 bits (1141), Expect = e-125
 Identities = 220/220 (100%), Positives = 220/220 (100%)

Query: 1   MSEGESKDSSGSECPVCYEKFRDLEGASRTLSCGHVFCHDCLVKYLLSTRVDGQVQRTLV 60
           MSEGESKDSSGSECPVCYEKFRDLEGASRTLSCGHVFCHDCLVKYLLSTRVDGQVQRTLV
Sbjct: 1   MSEGESKDSSGSECPVCYEKFRDLEGASRTLSCGHVFCHDCLVKYLLSTRVDGQVQRTLV 60

Query: 61  CPICRYVTFLSKKSSRWPSMLDKSSQTLAVPVGLPSVPPLDSLGHTNPLAASSPAWRPPP 120
           CPICRYVTFLSKKSSRWPSMLDKSSQTLAVPVGLPSVPPLDSLGHTNPLAASSPAWRPPP
Sbjct: 61  CPICRYVTFLSKKSSRWPSMLDKSSQTLAVPVGLPSVPPLDSLGHTNPLAASSPAWRPPP 120

Query: 121 GQARPPGSPGQSAQLPLDLLPSLPRESQIFVISRHGMPLGEQDSVLPRRSLAELSEASLA 180
           GQARPPGSPGQSAQLPLDLLPSLPRESQIFVISRHGMPLGEQDSVLPRRSLAELSEASLA
Sbjct: 121 GQARPPGSPGQSAQLPLDLLPSLPRESQIFVISRHGMPLGEQDSVLPRRSLAELSEASLA 180

Query: 181 PRSARAFCCRSRALLLITLIAVVAVVAAILPWVLLVRKQA 220
           PRSARAFCCRSRALLLITLIAVVAVVAAILPWVLLVRKQA
Sbjct: 181 PRSARAFCCRSRALLLITLIAVVAVVAAILPWVLLVRKQA 220


>gi|239756718 PREDICTED: ring finger protein 222 [Homo sapiens]
          Length = 220

 Score =  441 bits (1133), Expect = e-124
 Identities = 219/220 (99%), Positives = 219/220 (99%)

Query: 1   MSEGESKDSSGSECPVCYEKFRDLEGASRTLSCGHVFCHDCLVKYLLSTRVDGQVQRTLV 60
           MSEGESKDSSGSECPVCYEKFRDLEGASRTLSCGHVFCHDCLVKYLLSTRVDGQVQRTLV
Sbjct: 1   MSEGESKDSSGSECPVCYEKFRDLEGASRTLSCGHVFCHDCLVKYLLSTRVDGQVQRTLV 60

Query: 61  CPICRYVTFLSKKSSRWPSMLDKSSQTLAVPVGLPSVPPLDSLGHTNPLAASSPAWRPPP 120
           CPICRYVTFLSKKSSRWPSMLDKSSQTLAVPVGLPSVPPLDSLGHTNPLAASS AWRPPP
Sbjct: 61  CPICRYVTFLSKKSSRWPSMLDKSSQTLAVPVGLPSVPPLDSLGHTNPLAASSSAWRPPP 120

Query: 121 GQARPPGSPGQSAQLPLDLLPSLPRESQIFVISRHGMPLGEQDSVLPRRSLAELSEASLA 180
           GQARPPGSPGQSAQLPLDLLPSLPRESQIFVISRHGMPLGEQDSVLPRRSLAELSEASLA
Sbjct: 121 GQARPPGSPGQSAQLPLDLLPSLPRESQIFVISRHGMPLGEQDSVLPRRSLAELSEASLA 180

Query: 181 PRSARAFCCRSRALLLITLIAVVAVVAAILPWVLLVRKQA 220
           PRSARAFCCRSRALLLITLIAVVAVVAAILPWVLLVRKQA
Sbjct: 181 PRSARAFCCRSRALLLITLIAVVAVVAAILPWVLLVRKQA 220


>gi|239751213 PREDICTED: ring finger protein 222 [Homo sapiens]
          Length = 220

 Score =  441 bits (1133), Expect = e-124
 Identities = 219/220 (99%), Positives = 219/220 (99%)

Query: 1   MSEGESKDSSGSECPVCYEKFRDLEGASRTLSCGHVFCHDCLVKYLLSTRVDGQVQRTLV 60
           MSEGESKDSSGSECPVCYEKFRDLEGASRTLSCGHVFCHDCLVKYLLSTRVDGQVQRTLV
Sbjct: 1   MSEGESKDSSGSECPVCYEKFRDLEGASRTLSCGHVFCHDCLVKYLLSTRVDGQVQRTLV 60

Query: 61  CPICRYVTFLSKKSSRWPSMLDKSSQTLAVPVGLPSVPPLDSLGHTNPLAASSPAWRPPP 120
           CPICRYVTFLSKKSSRWPSMLDKSSQTLAVPVGLPSVPPLDSLGHTNPLAASS AWRPPP
Sbjct: 61  CPICRYVTFLSKKSSRWPSMLDKSSQTLAVPVGLPSVPPLDSLGHTNPLAASSSAWRPPP 120

Query: 121 GQARPPGSPGQSAQLPLDLLPSLPRESQIFVISRHGMPLGEQDSVLPRRSLAELSEASLA 180
           GQARPPGSPGQSAQLPLDLLPSLPRESQIFVISRHGMPLGEQDSVLPRRSLAELSEASLA
Sbjct: 121 GQARPPGSPGQSAQLPLDLLPSLPRESQIFVISRHGMPLGEQDSVLPRRSLAELSEASLA 180

Query: 181 PRSARAFCCRSRALLLITLIAVVAVVAAILPWVLLVRKQA 220
           PRSARAFCCRSRALLLITLIAVVAVVAAILPWVLLVRKQA
Sbjct: 181 PRSARAFCCRSRALLLITLIAVVAVVAAILPWVLLVRKQA 220


>gi|169214080 PREDICTED: hypothetical protein LOC646862 [Homo
           sapiens]
          Length = 329

 Score = 49.7 bits (117), Expect = 2e-06
 Identities = 47/178 (26%), Positives = 64/178 (35%), Gaps = 54/178 (30%)

Query: 3   EGESKDSSGS--------ECPVCYEKFRDLEGASRTLSCGHVFCHDCLVKYLLSTRVDGQ 54
           EG+    SG         EC +C   F  +    + L CGHVFC +CL +  L+T   G 
Sbjct: 45  EGDGSPGSGPILPPASPVECLICVSSFDGVFKLPKRLDCGHVFCLECLARLSLATAGGG- 103

Query: 55  VQRTLVCPICRYVTFLSKKSSRWPSMLDKSSQTLAVPVGLPSVPPLDSLGHTNPLAASSP 114
               + CP+CR  T L+ +                   GLP++P    L    P  A +P
Sbjct: 104 --NAVACPVCRAPTRLAPRR------------------GLPALPTQSGL---LPRDARAP 140

Query: 115 AWR-------------------PPPGQAR---PPGSPGQSAQLPLDLLPSLPRESQIF 150
             R                   PPPG  +   PP  P      PL    SL   + +F
Sbjct: 141 PSRQGSVRFDRRRGLLYLRPPPPPPGPRKARAPPPPPPLRLGRPLSRRLSLASPAWVF 198


>gi|169214500 PREDICTED: hypothetical protein LOC646862 [Homo
           sapiens]
          Length = 329

 Score = 49.7 bits (117), Expect = 2e-06
 Identities = 47/178 (26%), Positives = 64/178 (35%), Gaps = 54/178 (30%)

Query: 3   EGESKDSSGS--------ECPVCYEKFRDLEGASRTLSCGHVFCHDCLVKYLLSTRVDGQ 54
           EG+    SG         EC +C   F  +    + L CGHVFC +CL +  L+T   G 
Sbjct: 45  EGDGSPGSGPILPPASPVECLICVSSFDGVFKLPKRLDCGHVFCLECLARLSLATAGGG- 103

Query: 55  VQRTLVCPICRYVTFLSKKSSRWPSMLDKSSQTLAVPVGLPSVPPLDSLGHTNPLAASSP 114
               + CP+CR  T L+ +                   GLP++P    L    P  A +P
Sbjct: 104 --NAVACPVCRAPTRLAPRR------------------GLPALPTQSGL---LPRDARAP 140

Query: 115 AWR-------------------PPPGQAR---PPGSPGQSAQLPLDLLPSLPRESQIF 150
             R                   PPPG  +   PP  P      PL    SL   + +F
Sbjct: 141 PSRQGSVRFDRRRGLLYLRPPPPPPGPRKARAPPPPPPLRLGRPLSRRLSLASPAWVF 198


>gi|169213453 PREDICTED: hypothetical protein LOC646862 [Homo
           sapiens]
          Length = 329

 Score = 49.7 bits (117), Expect = 2e-06
 Identities = 47/178 (26%), Positives = 64/178 (35%), Gaps = 54/178 (30%)

Query: 3   EGESKDSSGS--------ECPVCYEKFRDLEGASRTLSCGHVFCHDCLVKYLLSTRVDGQ 54
           EG+    SG         EC +C   F  +    + L CGHVFC +CL +  L+T   G 
Sbjct: 45  EGDGSPGSGPILPPASPVECLICVSSFDGVFKLPKRLDCGHVFCLECLARLSLATAGGG- 103

Query: 55  VQRTLVCPICRYVTFLSKKSSRWPSMLDKSSQTLAVPVGLPSVPPLDSLGHTNPLAASSP 114
               + CP+CR  T L+ +                   GLP++P    L    P  A +P
Sbjct: 104 --NAVACPVCRAPTRLAPRR------------------GLPALPTQSGL---LPRDARAP 140

Query: 115 AWR-------------------PPPGQAR---PPGSPGQSAQLPLDLLPSLPRESQIF 150
             R                   PPPG  +   PP  P      PL    SL   + +F
Sbjct: 141 PSRQGSVRFDRRRGLLYLRPPPPPPGPRKARAPPPPPPLRLGRPLSRRLSLASPAWVF 198


>gi|153252110 ring finger protein 183 [Homo sapiens]
          Length = 192

 Score = 49.3 bits (116), Expect = 3e-06
 Identities = 25/71 (35%), Positives = 38/71 (53%), Gaps = 5/71 (7%)

Query: 1  MSEGESKDSSGSECPVCYEKFRDLEGASRTLSCGHVFCHDCLVKYLLSTRVDGQVQRTLV 60
          M+E + ++   +ECPVC+  F +     + L C H FC +CL    L T      +R L+
Sbjct: 1  MAEQQGRELE-AECPVCWNPFNNTFHTPKMLDCCHSFCVECLAHLSLVT----PARRRLL 55

Query: 61 CPICRYVTFLS 71
          CP+CR  T L+
Sbjct: 56 CPLCRQPTVLA 66


>gi|239752655 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 249

 Score = 46.2 bits (108), Expect = 2e-05
 Identities = 20/65 (30%), Positives = 32/65 (49%)

Query: 4   GESKDSSGSECPVCYEKFRDLEGASRTLSCGHVFCHDCLVKYLLSTRVDGQVQRTLVCPI 63
           G  + +S  EC +C+  + ++    + LSC HVFC +CL +   +  V       + CP 
Sbjct: 41  GSERVASPLECSICFSGYDNIFKTPKELSCTHVFCLECLARLAAAQPVGRPGGEAVPCPF 100

Query: 64  CRYVT 68
           CR  T
Sbjct: 101 CRQPT 105


>gi|239747208 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 249

 Score = 46.2 bits (108), Expect = 2e-05
 Identities = 20/65 (30%), Positives = 32/65 (49%)

Query: 4   GESKDSSGSECPVCYEKFRDLEGASRTLSCGHVFCHDCLVKYLLSTRVDGQVQRTLVCPI 63
           G  + +S  EC +C+  + ++    + LSC HVFC +CL +   +  V       + CP 
Sbjct: 41  GSERVASPLECSICFSGYDNIFKTPKELSCTHVFCLECLARLAAAQPVGRPGGEAVPCPF 100

Query: 64  CRYVT 68
           CR  T
Sbjct: 101 CRQPT 105


>gi|239740999 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 249

 Score = 46.2 bits (108), Expect = 2e-05
 Identities = 20/65 (30%), Positives = 32/65 (49%)

Query: 4   GESKDSSGSECPVCYEKFRDLEGASRTLSCGHVFCHDCLVKYLLSTRVDGQVQRTLVCPI 63
           G  + +S  EC +C+  + ++    + LSC HVFC +CL +   +  V       + CP 
Sbjct: 41  GSERVASPLECSICFSGYDNIFKTPKELSCTHVFCLECLARLAAAQPVGRPGGEAVPCPF 100

Query: 64  CRYVT 68
           CR  T
Sbjct: 101 CRQPT 105


>gi|153791514 tripartite motif-containing 32 [Homo sapiens]
          Length = 653

 Score = 46.2 bits (108), Expect = 2e-05
 Identities = 21/56 (37%), Positives = 31/56 (55%), Gaps = 6/56 (10%)

Query: 13 ECPVCYEKFRDLEGASRTLSCGHVFCHDCLVKYLLSTRVDGQVQRTLVCPICRYVT 68
          ECP+C E F + +   + L CGH  C  CL K LL++ ++G     + CP C  +T
Sbjct: 19 ECPICMESFTEEQLRPKLLHCGHTICRQCLEK-LLASSING-----VRCPFCSKIT 68


>gi|153792582 tripartite motif-containing 32 [Homo sapiens]
          Length = 653

 Score = 46.2 bits (108), Expect = 2e-05
 Identities = 21/56 (37%), Positives = 31/56 (55%), Gaps = 6/56 (10%)

Query: 13 ECPVCYEKFRDLEGASRTLSCGHVFCHDCLVKYLLSTRVDGQVQRTLVCPICRYVT 68
          ECP+C E F + +   + L CGH  C  CL K LL++ ++G     + CP C  +T
Sbjct: 19 ECPICMESFTEEQLRPKLLHCGHTICRQCLEK-LLASSING-----VRCPFCSKIT 68


>gi|30023818 tripartite motif protein 50A [Homo sapiens]
          Length = 487

 Score = 44.7 bits (104), Expect = 6e-05
 Identities = 33/99 (33%), Positives = 50/99 (50%), Gaps = 17/99 (17%)

Query: 13  ECPVCYEKFRDLEGASRTLSCGHVFCHDCLVKYLLSTRVDGQVQRTLVCPICRYVTFLSK 72
           +CP+C E F++       L CGH +C  CLV   LS  +D +++    CP+CR       
Sbjct: 15  QCPICLEVFKE----PLMLQCGHSYCKGCLVS--LSCHLDAELR----CPVCRQAV---D 61

Query: 73  KSSRWPSM-LDKSSQTLAVPVGLPSVPPLDSLGHTNPLA 110
            SS  P++ L +  + L +P G P   P   + H NPL+
Sbjct: 62  GSSSLPNVSLARVIEALRLP-GDPE--PKVCVHHRNPLS 97


>gi|153791360 ret finger protein-like 4B [Homo sapiens]
          Length = 263

 Score = 44.7 bits (104), Expect = 6e-05
 Identities = 22/54 (40%), Positives = 29/54 (53%), Gaps = 9/54 (16%)

Query: 14 CPVCYEKFRDLEGASRTLSCGHVFCHDCLVKYLLSTRVDGQVQRTLVCPICRYV 67
          CPVC + F      S +LSC HVFC DC+ +Y+L            +CP+CR V
Sbjct: 11 CPVCLDFF----SCSISLSCTHVFCFDCIQRYILENH-----DFRAMCPLCRDV 55


>gi|22749455 ring finger protein 182 [Homo sapiens]
          Length = 247

 Score = 44.3 bits (103), Expect = 8e-05
 Identities = 22/66 (33%), Positives = 31/66 (46%), Gaps = 3/66 (4%)

Query: 5  ESKDSSGSECPVCYEKFRDLEGASRTLSCGHVFCHDCLVKYLLSTRVDGQVQRTLVCPIC 64
          ES+ S   EC +CY ++   +   + L C H  C  CL K +         Q  +VCP C
Sbjct: 11 ESQASDELECKICYNRYNLKQRKPKVLECCHRVCAKCLYKII---DFGDSPQGVIVCPFC 67

Query: 65 RYVTFL 70
          R+ T L
Sbjct: 68 RFETCL 73


>gi|38524612 tripartite motif-containing 74 [Homo sapiens]
          Length = 250

 Score = 43.5 bits (101), Expect = 1e-04
 Identities = 34/99 (34%), Positives = 49/99 (49%), Gaps = 17/99 (17%)

Query: 13  ECPVCYEKFRDLEGASRTLSCGHVFCHDCLVKYLLSTRVDGQVQRTLVCPICRYVTFLSK 72
           +CP+C E F++    S  L CGH +C  CLV   LS  +D +V+    CP+C  V     
Sbjct: 15  QCPICLEVFKE----SLMLQCGHSYCKGCLVS--LSYHLDTKVR----CPMCWQVV---D 61

Query: 73  KSSRWPSMLDKSSQTLAVPVGLPSVP-PLDSLGHTNPLA 110
            SS  P++   S   +   + LP  P P   + H NPL+
Sbjct: 62  GSSSLPNV---SLAWVIEALRLPGDPEPKVCVHHRNPLS 97


>gi|65285121 tripartite motif-containing 73 [Homo sapiens]
          Length = 250

 Score = 43.5 bits (101), Expect = 1e-04
 Identities = 34/99 (34%), Positives = 49/99 (49%), Gaps = 17/99 (17%)

Query: 13  ECPVCYEKFRDLEGASRTLSCGHVFCHDCLVKYLLSTRVDGQVQRTLVCPICRYVTFLSK 72
           +CP+C E F++    S  L CGH +C  CLV   LS  +D +V+    CP+C  V     
Sbjct: 15  QCPICLEVFKE----SLMLQCGHSYCKGCLVS--LSYHLDTKVR----CPMCWQVV---D 61

Query: 73  KSSRWPSMLDKSSQTLAVPVGLPSVP-PLDSLGHTNPLA 110
            SS  P++   S   +   + LP  P P   + H NPL+
Sbjct: 62  GSSSLPNV---SLAWVIEALRLPGDPEPKVCVHHRNPLS 97


>gi|56605981 tripartite motif-containing 72 [Homo sapiens]
          Length = 477

 Score = 43.1 bits (100), Expect = 2e-04
 Identities = 30/97 (30%), Positives = 40/97 (41%), Gaps = 16/97 (16%)

Query: 14  CPVCYEKFRDLEGASRTLSCGHVFCHDCLVKYLLSTRVDGQVQRTLVCPICRYVTFLSKK 73
           CP+C + F     A  T  CGH FC  CL +       DG    T++CP C+  T     
Sbjct: 14  CPLCLQLF----DAPVTAECGHSFCRACLGRVAGEPAADG----TVLCPCCQAPT----- 60

Query: 74  SSRWPSMLDKSSQTLAVPVGLPSVPPLDSLGHTNPLA 110
               P  L  + Q   +  GL  VP      H +PL+
Sbjct: 61  ---RPQALSTNLQLARLVEGLAQVPQGHCEEHLDPLS 94


>gi|111548666 SNF2 histone linker PHD RING helicase isoform a [Homo
            sapiens]
          Length = 1687

 Score = 42.7 bits (99), Expect = 2e-04
 Identities = 27/95 (28%), Positives = 45/95 (47%), Gaps = 9/95 (9%)

Query: 1    MSEGESKDSSG---SECPVCYEKFRDLEGASRTLSCGHVFCHDCLVKYLLSTRVDGQVQR 57
            + + + K S G     CP+C    R L      L+CGH FC++C +  ++     G  + 
Sbjct: 1420 LEKSQDKTSGGVNPEPCPICA---RQLGKQWAVLTCGHCFCNEC-ISIIIEQYSVGSHRS 1475

Query: 58   TLVCPICRYVTFLSKKSSRWPSMLDKSSQTLAVPV 92
            ++ C ICR  T  S K   +    +K++Q   +PV
Sbjct: 1476 SIKCAICRQTT--SHKEISYVFTSEKANQEEDIPV 1508


>gi|27436873 SNF2 histone linker PHD RING helicase isoform b [Homo
            sapiens]
          Length = 1659

 Score = 42.7 bits (99), Expect = 2e-04
 Identities = 27/95 (28%), Positives = 45/95 (47%), Gaps = 9/95 (9%)

Query: 1    MSEGESKDSSG---SECPVCYEKFRDLEGASRTLSCGHVFCHDCLVKYLLSTRVDGQVQR 57
            + + + K S G     CP+C    R L      L+CGH FC++C +  ++     G  + 
Sbjct: 1420 LEKSQDKTSGGVNPEPCPICA---RQLGKQWAVLTCGHCFCNEC-ISIIIEQYSVGSHRS 1475

Query: 58   TLVCPICRYVTFLSKKSSRWPSMLDKSSQTLAVPV 92
            ++ C ICR  T  S K   +    +K++Q   +PV
Sbjct: 1476 SIKCAICRQTT--SHKEISYVFTSEKANQEEDIPV 1508


>gi|221139764 PHD and ring finger domains 1 [Homo sapiens]
          Length = 1648

 Score = 42.4 bits (98), Expect = 3e-04
 Identities = 25/81 (30%), Positives = 36/81 (44%), Gaps = 2/81 (2%)

Query: 6   SKDSSGSECPVCYEKFRDLEGASRTLSCGHVFCHDCLVKYLLSTRVDGQVQRTLVCPICR 65
           + D     CP+C   FRD +      +C H FC DC+V++  +      V RTL   IC 
Sbjct: 100 NSDDDAESCPICLNAFRD-QAVGTPENCAHYFCLDCIVEWSKNAN-SCPVDRTLFKCICI 157

Query: 66  YVTFLSKKSSRWPSMLDKSSQ 86
              F  K   + P    K+S+
Sbjct: 158 RAQFGGKILRKIPVENTKASE 178


>gi|150010572 SH3 domain containing ring finger 3 [Homo sapiens]
          Length = 882

 Score = 42.4 bits (98), Expect = 3e-04
 Identities = 41/134 (30%), Positives = 52/134 (38%), Gaps = 35/134 (26%)

Query: 4   GESKDSSGS----ECPVCYEKFRDLEGASRTLSCGHVFCHDCLVKYLLSTRVDGQVQRTL 59
           GE  D S      EC VC E+   L+  ++ L C H FC  CL   + S       +  L
Sbjct: 43  GEDMDESSLLDLLECSVCLER---LDTTAKVLPCQHTFCRRCLESIVCS-------RHEL 92

Query: 60  VCPICRYVTFLSKKSSRWPSMLDKSSQTLAVPVGLPSVPPLDSLGHTNPLAASSPAWRPP 119
            CP CR +                      +P  +  V  LD +    P A +SP   PP
Sbjct: 93  RCPECRILVGCGVDE---------------LPANILLVRLLDGI-RQRPRAGTSPGGSPP 136

Query: 120 PGQARPPGSPGQSA 133
              ARP   PGQSA
Sbjct: 137 ---ARP--IPGQSA 145


>gi|222446607 SH3 domain containing ring finger 2 [Homo sapiens]
          Length = 729

 Score = 41.6 bits (96), Expect = 5e-04
 Identities = 21/57 (36%), Positives = 28/57 (49%), Gaps = 10/57 (17%)

Query: 13 ECPVCYEKFRDLEGASRTLSCGHVFCHDCLVKYLLSTRVDGQVQRTLVCPICRYVTF 69
          ECPVC+EK   L+  ++ L C H FC  CL +         +  + L CP CR   F
Sbjct: 11 ECPVCFEK---LDVTAKVLPCQHTFCKPCLQRVF-------KAHKELRCPECRTPVF 57


>gi|47717106 zinc finger, FYVE domain containing 9 isoform 3 [Homo
           sapiens]
          Length = 1425

 Score = 41.6 bits (96), Expect = 5e-04
 Identities = 34/124 (27%), Positives = 49/124 (39%), Gaps = 8/124 (6%)

Query: 8   DSSGSECPVCYEKFRDLEGASRTLSCGHVFCHDCLVKYLLSTRVDGQVQRTLVCPICRYV 67
           DS    C  C  +F   +      +CG VFC  C         +D +  R  VC IC  V
Sbjct: 699 DSQAPNCMKCEARFTFTKRRHHCRACGKVFCASCCSLKCKLLYMDRKEAR--VCVICHSV 756

Query: 68  TFLSKKSSRWPSMLDKSSQTLAV--PVGLPS-VPPLDSLGHTNPLAASSPAWRPPPGQAR 124
                 +  W +M+  SSQ+     P    S +PPL     +  L++  P    P G  +
Sbjct: 757 LM---NAQAWENMMSASSQSPNPNNPAEYCSTIPPLQQAQASGALSSPPPTVMVPVGVLK 813

Query: 125 PPGS 128
            PG+
Sbjct: 814 HPGA 817


>gi|27436877 tripartite motif-containing 59 [Homo sapiens]
          Length = 403

 Score = 41.6 bits (96), Expect = 5e-04
 Identities = 21/58 (36%), Positives = 29/58 (50%), Gaps = 7/58 (12%)

Query: 14 CPVCYEKFRDLEGASRTLSCGHVFCHDCLVKYLLST---RVDGQVQRTLVCPICRYVT 68
          CP+CY  F D     R L C H FC +CL   L ++    +   ++  L CP CR +T
Sbjct: 10 CPICYSIFED----PRVLPCSHTFCRNCLENILQASGNFYIWRPLRIPLKCPNCRSIT 63


>gi|194248081 tripartite motif-containing 2 isoform 2 [Homo
          sapiens]
          Length = 744

 Score = 41.2 bits (95), Expect = 7e-04
 Identities = 19/60 (31%), Positives = 31/60 (51%), Gaps = 10/60 (16%)

Query: 14 CPVCYEKFRDLEGASRTLSCGHVFCHDCLVKYLLSTRVDGQVQRTLVCPICRYVTFLSKK 73
          C +C E++++     + L C H FC  CL  Y+ +  +      TL CP+CR  + L +K
Sbjct: 23 CSICLERYKN----PKVLPCLHTFCERCLQNYIPAHSL------TLSCPVCRQTSILPEK 72


>gi|194248079 tripartite motif-containing 2 isoform 1 [Homo
          sapiens]
          Length = 771

 Score = 41.2 bits (95), Expect = 7e-04
 Identities = 19/60 (31%), Positives = 31/60 (51%), Gaps = 10/60 (16%)

Query: 14 CPVCYEKFRDLEGASRTLSCGHVFCHDCLVKYLLSTRVDGQVQRTLVCPICRYVTFLSKK 73
          C +C E++++     + L C H FC  CL  Y+ +  +      TL CP+CR  + L +K
Sbjct: 50 CSICLERYKN----PKVLPCLHTFCERCLQNYIPAHSL------TLSCPVCRQTSILPEK 99


>gi|94536782 tripartite motif-containing 35 isoform 2 [Homo
          sapiens]
          Length = 493

 Score = 41.2 bits (95), Expect = 7e-04
 Identities = 20/52 (38%), Positives = 28/52 (53%), Gaps = 11/52 (21%)

Query: 14 CPVCYEKFRDLEGASRTLSCGHVFCHDCLVKYLLSTRVDGQVQRTLVCPICR 65
          C VCY+ FRD    + TL CGH FC  C+ +         +VQ +  CP+C+
Sbjct: 21 CAVCYDPFRD----AVTLRCGHNFCRGCVSRC-------WEVQVSPTCPVCK 61


>gi|223890259 midline 2 isoform 2 [Homo sapiens]
          Length = 705

 Score = 40.4 bits (93), Expect = 0.001
 Identities = 21/63 (33%), Positives = 29/63 (46%), Gaps = 7/63 (11%)

Query: 14 CPVCYEKFRDLEGASRTLSCGHVFCHDCLVKYLLSTRVDGQVQRTLV---CPICRYVTFL 70
          CP+C E F D       L C H  C  C  + L+S+   G+    +    CP CRYV  L
Sbjct: 30 CPICLELFED----PLLLPCAHSLCFSCAHRILVSSCSSGESIEPITAFQCPTCRYVISL 85

Query: 71 SKK 73
          + +
Sbjct: 86 NHR 88


  Database: hs.faa
    Posted date:  Aug 4, 2009  4:42 PM
  Number of letters in database: 18,247,518
  Number of sequences in database:  37,866
  
Lambda     K      H
   0.320    0.134    0.413 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9,605,177
Number of Sequences: 37866
Number of extensions: 527743
Number of successful extensions: 6421
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 132
Number of HSP's successfully gapped in prelim test: 464
Number of HSP's that attempted gapping in prelim test: 4991
Number of HSP's gapped (non-prelim): 1867
length of query: 220
length of database: 18,247,518
effective HSP length: 98
effective length of query: 122
effective length of database: 14,536,650
effective search space: 1773471300
effective search space used: 1773471300
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 60 (27.7 bits)

Search results were obtained with NCBI BLAST and RefSeq entries.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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