Home |
Table of Contents |
Search text |
Search genes |
Search sequences |
Purchase |
FAQ |
Blog |
Help
Search of human proteins with 225007536
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|225007536 CD8 antigen alpha polypeptide isoform 1 precursor
[Homo sapiens]
(235 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|22902134 CD8 antigen alpha polypeptide isoform 1 precursor [H... 484 e-137
gi|225007536 CD8 antigen alpha polypeptide isoform 1 precursor [... 484 e-137
gi|27886642 CD8 antigen alpha polypeptide isoform 2 precursor [H... 384 e-107
gi|169163724 PREDICTED: similar to hCG26659 [Homo sapiens] 47 2e-05
gi|239747852 PREDICTED: hypothetical protein XP_002346449 [Homo ... 47 2e-05
gi|169163023 PREDICTED: similar to hCG26659 [Homo sapiens] 47 2e-05
gi|239749275 PREDICTED: hypothetical protein XP_002346976 [Homo ... 44 1e-04
gi|239757668 PREDICTED: similar to Ig lambda chain [Homo sapiens] 44 2e-04
gi|169163270 PREDICTED: similar to hCG2043206 [Homo sapiens] 44 2e-04
gi|239757664 PREDICTED: similar to hCG2040019 [Homo sapiens] 43 2e-04
gi|153945782 natural cytotoxicity triggering receptor 2 [Homo sa... 43 2e-04
gi|239752152 PREDICTED: hypothetical protein XP_002348153 [Homo ... 43 3e-04
gi|239753214 PREDICTED: similar to hCG2043206 [Homo sapiens] 42 5e-04
gi|239753212 PREDICTED: similar to hCG1686089 [Homo sapiens] 42 6e-04
gi|239749464 PREDICTED: hypothetical protein XP_002347049 [Homo ... 42 6e-04
gi|229089140 leucine rich repeat containing 24 [Homo sapiens] 40 0.001
gi|224994173 roundabout 1 isoform d [Homo sapiens] 40 0.002
gi|224994171 roundabout 1 isoform c [Homo sapiens] 40 0.002
gi|19743806 roundabout 1 isoform b [Homo sapiens] 40 0.002
gi|169218204 PREDICTED: similar to pre-B lymphocyte gene 1 [Homo... 40 0.002
gi|239748173 PREDICTED: similar to roundabout 1 isoform 1 [Homo ... 40 0.002
gi|239748171 PREDICTED: similar to roundabout 1 isoform 2 [Homo ... 40 0.002
gi|4506569 roundabout 1 isoform a [Homo sapiens] 40 0.002
gi|239754730 PREDICTED: similar to hCG1737378 [Homo sapiens] 39 0.003
gi|126090663 zinc finger homeodomain 4 [Homo sapiens] 39 0.005
gi|169167318 PREDICTED: similar to hCG2042707 [Homo sapiens] 37 0.011
gi|239754726 PREDICTED: similar to hCG2002986 [Homo sapiens] 37 0.019
gi|193083163 roundabout, axon guidance receptor, homolog 2 isofo... 36 0.025
gi|61888896 roundabout, axon guidance receptor, homolog 2 isofor... 36 0.025
gi|151301154 mucin 6, gastric [Homo sapiens] 35 0.073
>gi|22902134 CD8 antigen alpha polypeptide isoform 1 precursor [Homo
sapiens]
Length = 235
Score = 484 bits (1247), Expect = e-137
Identities = 235/235 (100%), Positives = 235/235 (100%)
Query: 1 MALPVTALLLPLALLLHAARPSQFRVSPLDRTWNLGETVELKCQVLLSNPTSGCSWLFQP 60
MALPVTALLLPLALLLHAARPSQFRVSPLDRTWNLGETVELKCQVLLSNPTSGCSWLFQP
Sbjct: 1 MALPVTALLLPLALLLHAARPSQFRVSPLDRTWNLGETVELKCQVLLSNPTSGCSWLFQP 60
Query: 61 RGAAASPTFLLYLSQNKPKAAEGLDTQRFSGKRLGDTFVLTLSDFRRENEGYYFCSALSN 120
RGAAASPTFLLYLSQNKPKAAEGLDTQRFSGKRLGDTFVLTLSDFRRENEGYYFCSALSN
Sbjct: 61 RGAAASPTFLLYLSQNKPKAAEGLDTQRFSGKRLGDTFVLTLSDFRRENEGYYFCSALSN 120
Query: 121 SIMYFSHFVPVFLPAKPTTTPAPRPPTPAPTIASQPLSLRPEACRPAAGGAVHTRGLDFA 180
SIMYFSHFVPVFLPAKPTTTPAPRPPTPAPTIASQPLSLRPEACRPAAGGAVHTRGLDFA
Sbjct: 121 SIMYFSHFVPVFLPAKPTTTPAPRPPTPAPTIASQPLSLRPEACRPAAGGAVHTRGLDFA 180
Query: 181 CDIYIWAPLAGTCGVLLLSLVITLYCNHRNRRRVCKCPRPVVKSGDKPSLSARYV 235
CDIYIWAPLAGTCGVLLLSLVITLYCNHRNRRRVCKCPRPVVKSGDKPSLSARYV
Sbjct: 181 CDIYIWAPLAGTCGVLLLSLVITLYCNHRNRRRVCKCPRPVVKSGDKPSLSARYV 235
>gi|225007536 CD8 antigen alpha polypeptide isoform 1 precursor
[Homo sapiens]
Length = 235
Score = 484 bits (1247), Expect = e-137
Identities = 235/235 (100%), Positives = 235/235 (100%)
Query: 1 MALPVTALLLPLALLLHAARPSQFRVSPLDRTWNLGETVELKCQVLLSNPTSGCSWLFQP 60
MALPVTALLLPLALLLHAARPSQFRVSPLDRTWNLGETVELKCQVLLSNPTSGCSWLFQP
Sbjct: 1 MALPVTALLLPLALLLHAARPSQFRVSPLDRTWNLGETVELKCQVLLSNPTSGCSWLFQP 60
Query: 61 RGAAASPTFLLYLSQNKPKAAEGLDTQRFSGKRLGDTFVLTLSDFRRENEGYYFCSALSN 120
RGAAASPTFLLYLSQNKPKAAEGLDTQRFSGKRLGDTFVLTLSDFRRENEGYYFCSALSN
Sbjct: 61 RGAAASPTFLLYLSQNKPKAAEGLDTQRFSGKRLGDTFVLTLSDFRRENEGYYFCSALSN 120
Query: 121 SIMYFSHFVPVFLPAKPTTTPAPRPPTPAPTIASQPLSLRPEACRPAAGGAVHTRGLDFA 180
SIMYFSHFVPVFLPAKPTTTPAPRPPTPAPTIASQPLSLRPEACRPAAGGAVHTRGLDFA
Sbjct: 121 SIMYFSHFVPVFLPAKPTTTPAPRPPTPAPTIASQPLSLRPEACRPAAGGAVHTRGLDFA 180
Query: 181 CDIYIWAPLAGTCGVLLLSLVITLYCNHRNRRRVCKCPRPVVKSGDKPSLSARYV 235
CDIYIWAPLAGTCGVLLLSLVITLYCNHRNRRRVCKCPRPVVKSGDKPSLSARYV
Sbjct: 181 CDIYIWAPLAGTCGVLLLSLVITLYCNHRNRRRVCKCPRPVVKSGDKPSLSARYV 235
>gi|27886642 CD8 antigen alpha polypeptide isoform 2 precursor [Homo
sapiens]
Length = 198
Score = 384 bits (987), Expect = e-107
Identities = 197/235 (83%), Positives = 197/235 (83%), Gaps = 37/235 (15%)
Query: 1 MALPVTALLLPLALLLHAARPSQFRVSPLDRTWNLGETVELKCQVLLSNPTSGCSWLFQP 60
MALPVTALLLPLALLLHAARPSQFRVSPLDRTWNLGETVELKCQVLLSNPTSGCSWLFQP
Sbjct: 1 MALPVTALLLPLALLLHAARPSQFRVSPLDRTWNLGETVELKCQVLLSNPTSGCSWLFQP 60
Query: 61 RGAAASPTFLLYLSQNKPKAAEGLDTQRFSGKRLGDTFVLTLSDFRRENEGYYFCSALSN 120
RGAAASPTFLLYLSQNKPKAAEGLDTQRFSGKRLGDTFVLTLSDFRRENEGYYFCSALSN
Sbjct: 61 RGAAASPTFLLYLSQNKPKAAEGLDTQRFSGKRLGDTFVLTLSDFRRENEGYYFCSALSN 120
Query: 121 SIMYFSHFVPVFLPAKPTTTPAPRPPTPAPTIASQPLSLRPEACRPAAGGAVHTRGLDFA 180
SIMYFSHFVPVFLPAKPTTTPAPRPPTPAPTIASQPLSLRPEACRPAAGGA
Sbjct: 121 SIMYFSHFVPVFLPAKPTTTPAPRPPTPAPTIASQPLSLRPEACRPAAGGA--------- 171
Query: 181 CDIYIWAPLAGTCGVLLLSLVITLYCNHRNRRRVCKCPRPVVKSGDKPSLSARYV 235
NRRRVCKCPRPVVKSGDKPSLSARYV
Sbjct: 172 ----------------------------GNRRRVCKCPRPVVKSGDKPSLSARYV 198
>gi|169163724 PREDICTED: similar to hCG26659 [Homo sapiens]
Length = 191
Score = 46.6 bits (109), Expect = 2e-05
Identities = 39/117 (33%), Positives = 55/117 (47%), Gaps = 9/117 (7%)
Query: 1 MALPVTALLLPLALL-LHAARPS-QFRVSPLDRTWNLGETVELKCQVLLSNPTSGCSWLF 58
M + V A LL L LL L AR Q SP + ++G+ V + C+ ++G SW
Sbjct: 1 MEMRVPAQLLGLLLLWLRGARCDIQVTQSPSSLSASVGDRVTITCRAS-QGISNGLSWYQ 59
Query: 59 QPRGAAASPTFLLYLSQNKPKAAEGLDTQRFSGKRLGDTFVLTLSDFRRENEGYYFC 115
Q G A PT L+Y + + RFSG G F LT+S + E+ Y+C
Sbjct: 60 QKPGQA--PTLLIYAASSLQSGVPS----RFSGSGSGTDFTLTISSLQPEDVATYYC 110
>gi|239747852 PREDICTED: hypothetical protein XP_002346449 [Homo
sapiens]
Length = 155
Score = 46.6 bits (109), Expect = 2e-05
Identities = 39/117 (33%), Positives = 55/117 (47%), Gaps = 9/117 (7%)
Query: 1 MALPVTALLLPLALL-LHAARPS-QFRVSPLDRTWNLGETVELKCQVLLSNPTSGCSWLF 58
M + V A LL L LL L AR Q SP + ++G+ V + C+ ++G SW
Sbjct: 1 MEMRVPAQLLGLLLLWLRGARCDIQVTQSPSSLSASVGDRVTITCRAS-QGISNGLSWYQ 59
Query: 59 QPRGAAASPTFLLYLSQNKPKAAEGLDTQRFSGKRLGDTFVLTLSDFRRENEGYYFC 115
Q G A PT L+Y + + RFSG G F LT+S + E+ Y+C
Sbjct: 60 QKPGQA--PTLLIYAASSLQSGVPS----RFSGSGSGTDFTLTISSLQPEDVATYYC 110
>gi|169163023 PREDICTED: similar to hCG26659 [Homo sapiens]
Length = 191
Score = 46.6 bits (109), Expect = 2e-05
Identities = 39/117 (33%), Positives = 55/117 (47%), Gaps = 9/117 (7%)
Query: 1 MALPVTALLLPLALL-LHAARPS-QFRVSPLDRTWNLGETVELKCQVLLSNPTSGCSWLF 58
M + V A LL L LL L AR Q SP + ++G+ V + C+ ++G SW
Sbjct: 1 MEMRVPAQLLGLLLLWLRGARCDIQVTQSPSSLSASVGDRVTITCRAS-QGISNGLSWYQ 59
Query: 59 QPRGAAASPTFLLYLSQNKPKAAEGLDTQRFSGKRLGDTFVLTLSDFRRENEGYYFC 115
Q G A PT L+Y + + RFSG G F LT+S + E+ Y+C
Sbjct: 60 QKPGQA--PTLLIYAASSLQSGVPS----RFSGSGSGTDFTLTISSLQPEDVATYYC 110
>gi|239749275 PREDICTED: hypothetical protein XP_002346976 [Homo
sapiens]
Length = 245
Score = 43.9 bits (102), Expect = 1e-04
Identities = 33/110 (30%), Positives = 52/110 (47%), Gaps = 8/110 (7%)
Query: 27 SPLDRTWNLGETVELKCQVLLSNPTSGCSWLFQPRGAAASPT-FLLYLSQNKPKAAEGLD 85
SP ++ G+ VEL+C +P SG + L+ R + FL+Y N GL
Sbjct: 106 SPSNKVTEKGKDVELRC-----DPISGHTALYWYRQSLGQGLEFLIYFQGNSAPDKSGLP 160
Query: 86 TQRFSGKRLGDTF-VLTLSDFRRENEGYYFCSALSNSIMYFSHFVPVFLP 134
+ RFS +R G + LT+ ++E+ Y C A S + + S +P P
Sbjct: 161 SDRFSAERTGGSVSTLTIQRTQQEDSAVYLC-ASSLATAWHSRLLPAHKP 209
>gi|239757668 PREDICTED: similar to Ig lambda chain [Homo sapiens]
Length = 288
Score = 43.5 bits (101), Expect = 2e-04
Identities = 38/144 (26%), Positives = 60/144 (41%), Gaps = 19/144 (13%)
Query: 55 SWLFQPRGAAASPTFLLYLSQNKPKAAEGLDTQRFSGKRLGDTFVLTLSDFRRENEGYYF 114
SW Q G A P ++Y N+P + RFSG + G+T LT+S + E+E Y+
Sbjct: 55 SWYQQHPGKA--PKLMIYDVSNRPSGV----SNRFSGSKSGNTASLTISGLQAEDEADYY 108
Query: 115 CSALSNSIMYFSHFVPVFLPAKPTTTPAPRPPTPAPTIASQPLSLRPEACRPAAGGAVHT 174
CS+ ++S H P + T P P A + P ++ +CR +
Sbjct: 109 CSSYTSSSTL--HSGPSSWGTETKTCPGLSGPLLALKMLPHP--VQAASCRTVTRSFLID 164
Query: 175 RGLDFACDIY---------IWAPL 189
F D++ +W PL
Sbjct: 165 AVTAFFRDVFTLHASPSPTLWPPL 188
Score = 31.6 bits (70), Expect = 0.62
Identities = 28/98 (28%), Positives = 39/98 (39%), Gaps = 18/98 (18%)
Query: 20 RPSQFRVSPLDRTWNLGETVELKCQ--VLLSNPTSGCSWLFQPRGAAASPTFLLYLSQNK 77
+P VSP G+T + C VL N W Q G A P ++Y +
Sbjct: 203 QPPAVSVSP-------GQTARISCSGDVLRDNYAD---WYPQKPGQA--PVLVIYKDGER 250
Query: 78 PKAAEGLDTQRFSGKRLGDTFVLTLSDFRRENEGYYFC 115
P +RFSG G+T LT+S + Y+C
Sbjct: 251 PSGIP----ERFSGSTSGNTTALTISRVLTKGGADYYC 284
>gi|169163270 PREDICTED: similar to hCG2043206 [Homo sapiens]
Length = 151
Score = 43.5 bits (101), Expect = 2e-04
Identities = 36/115 (31%), Positives = 48/115 (41%), Gaps = 6/115 (5%)
Query: 1 MALPVTALLLPLALLLHAARPSQFRVSPLDRTWNLGETVELKCQVLLSNPTSGCSWLFQP 60
M P L L L L SP + + GE L C+ S +S SW Q
Sbjct: 1 MEAPAQLLFLLLLWLPDTTGEIVMTQSPATLSLSPGERATLSCRASQSVSSSYLSWYQQK 60
Query: 61 RGAAASPTFLLYLSQNKPKAAEGLDTQRFSGKRLGDTFVLTLSDFRRENEGYYFC 115
G A P L+Y + + A G+ RFSG G F LT+S + E+ Y+C
Sbjct: 61 PGQA--PRLLIYGASTR---ATGIPA-RFSGSGSGTDFTLTISSLQPEDFAVYYC 109
>gi|239757664 PREDICTED: similar to hCG2040019 [Homo sapiens]
Length = 645
Score = 43.1 bits (100), Expect = 2e-04
Identities = 36/118 (30%), Positives = 52/118 (44%), Gaps = 12/118 (10%)
Query: 8 LLLPLALLLHAARPSQFRVSPLDRTWNLGETVELKCQ--VLLSNPTSGCSWLFQPRGAAA 65
LLLPL +L + S P + + G+T + C VL W Q G A
Sbjct: 475 LLLPLLILCTVSVASYELTQPSSVSVSPGQTARITCSGDVLAKKYAR---WFQQKPGQA- 530
Query: 66 SPTFLLYLSQNKPKAAEGLDTQRFSGKRLGDTFVLTLSDFRRENEGYYFC-SALSNSI 122
P ++Y +P +RFSG G T LT+S + E+E Y+C SA N++
Sbjct: 531 -PVLVIYKDSERPSGIP----ERFSGSSSGTTVTLTISGAQVEDEADYYCYSAADNNL 583
>gi|153945782 natural cytotoxicity triggering receptor 2 [Homo
sapiens]
Length = 276
Score = 43.1 bits (100), Expect = 2e-04
Identities = 43/167 (25%), Positives = 74/167 (44%), Gaps = 18/167 (10%)
Query: 10 LPLALLLHAARPSQFRVSPLDRTWNLGETVELKCQVLLSNPTSGCSWLFQPRG---AAAS 66
L L LLL +Q + L G+T+ ++CQ P +G L++ +G A++
Sbjct: 9 LLLLLLLFPGSQAQSKAQVLQSV--AGQTLTVRCQY----PPTGS--LYEKKGWCKEASA 60
Query: 67 PTFLLYLSQNKPKAAEGLDTQRFSGKRLGDT--FVLTLSDFRRENEGYYFCSALSNSIMY 124
+ ++ +KP+ T RF+ D F +T++D R E+ G+Y+C S
Sbjct: 61 LVCIRLVTSSKPRTMAW--TSRFTIWDDPDAGFFTVTMTDLREEDSGHYWCRIYRPSDNS 118
Query: 125 FSHFVPVFLPAKPTTTPAPRPPTPAPTIASQPLSLRPEACRPAAGGA 171
S V +L P + TP ++SQ + ++C P GA
Sbjct: 119 VSKSVRFYLVVSPASASTQTSWTPRDLVSSQ---TQTQSCVPPTAGA 162
>gi|239752152 PREDICTED: hypothetical protein XP_002348153 [Homo
sapiens]
Length = 264
Score = 42.7 bits (99), Expect = 3e-04
Identities = 34/116 (29%), Positives = 50/116 (43%), Gaps = 9/116 (7%)
Query: 10 LPLALLLHAARP--SQFRVSPLDRTWNLGETVELKCQVLLSNPTSGC-SWLFQPRGAAAS 66
L L LL H A P + G+ V + C SN S +W Q G A
Sbjct: 32 LLLTLLTHCAGSWAQSVLTQPPSASGTPGQRVTISCSGSSSNIGSNTVNWYQQLPGTA-- 89
Query: 67 PTFLLYLSQNKPKAAEGLDTQRFSGKRLGDTFVLTLSDFRRENEGYYFCSALSNSI 122
P L+Y + +P RFSG + G + L +S + E+E Y+C+A +S+
Sbjct: 90 PKLLIYSNNQRPSGVP----DRFSGSKSGTSASLAISGLQSEDEADYYCAAWDDSL 141
>gi|239753214 PREDICTED: similar to hCG2043206 [Homo sapiens]
Length = 157
Score = 42.0 bits (97), Expect = 5e-04
Identities = 30/89 (33%), Positives = 42/89 (47%), Gaps = 6/89 (6%)
Query: 27 SPLDRTWNLGETVELKCQVLLSNPTSGCSWLFQPRGAAASPTFLLYLSQNKPKAAEGLDT 86
SP + + GE L C+ S +S SW Q G A P L+Y + + A G+
Sbjct: 32 SPATLSLSPGERATLSCRASQSVSSSYLSWYQQKPGQA--PRLLIYGASTR---ATGIPA 86
Query: 87 QRFSGKRLGDTFVLTLSDFRRENEGYYFC 115
RFSG G F LT+S + E+ Y+C
Sbjct: 87 -RFSGSGSGTDFTLTISSLQPEDFAVYYC 114
>gi|239753212 PREDICTED: similar to hCG1686089 [Homo sapiens]
Length = 152
Score = 41.6 bits (96), Expect = 6e-04
Identities = 36/121 (29%), Positives = 49/121 (40%), Gaps = 6/121 (4%)
Query: 1 MALPVTALLLPLALLLHAARPSQFRVSPLDRTWNLGETVELKCQVLLSNPTSGCSWLFQP 60
M P L L L L SP + + GE L C S +S +W Q
Sbjct: 1 METPAQLLFLLLLWLPDTTGEIVLTQSPATLSLSPGERATLSCGASQSVSSSYLAWYQQK 60
Query: 61 RGAAASPTFLLYLSQNKPKAAEGLDTQRFSGKRLGDTFVLTLSDFRRENEGYYFCSALSN 120
G A P L+Y + ++ A G+ RFSG G F LT+S E+ Y+C +
Sbjct: 61 PGLA--PRLLIYDASSR---ATGIP-DRFSGSGSGTDFTLTISRLEPEDFAVYYCQQYGS 114
Query: 121 S 121
S
Sbjct: 115 S 115
>gi|239749464 PREDICTED: hypothetical protein XP_002347049 [Homo
sapiens]
Length = 152
Score = 41.6 bits (96), Expect = 6e-04
Identities = 36/121 (29%), Positives = 49/121 (40%), Gaps = 6/121 (4%)
Query: 1 MALPVTALLLPLALLLHAARPSQFRVSPLDRTWNLGETVELKCQVLLSNPTSGCSWLFQP 60
M P L L L L SP + + GE L C S +S +W Q
Sbjct: 1 METPAQLLFLLLLWLPDTTGEIVLTQSPATLSLSPGERATLSCGASQSVSSSYLAWYQQK 60
Query: 61 RGAAASPTFLLYLSQNKPKAAEGLDTQRFSGKRLGDTFVLTLSDFRRENEGYYFCSALSN 120
G A P L+Y + ++ A G+ RFSG G F LT+S E+ Y+C +
Sbjct: 61 PGLA--PRLLIYDASSR---ATGIP-DRFSGSGSGTDFTLTISRLEPEDFAVYYCQQYGS 114
Query: 121 S 121
S
Sbjct: 115 S 115
>gi|229089140 leucine rich repeat containing 24 [Homo sapiens]
Length = 513
Score = 40.4 bits (93), Expect = 0.001
Identities = 55/205 (26%), Positives = 79/205 (38%), Gaps = 32/205 (15%)
Query: 21 PSQFRVSPLDRTWNLGETVELKCQVLLSNPTSGCSW--LFQPRGAAASPTFLLYLSQNKP 78
P V PL+ T NLGE + + CQ P +W + QPR + +P
Sbjct: 259 PPSVHVQPLELTANLGEDLRVACQA-SGYPQPLVTWRKVPQPR-------------EGRP 304
Query: 79 KAAEGLD--TQRFSGKRLGDT--FVLTLSDFRRENEGYYFCSAL-SNSIMYFSHFVPVFL 133
+A L+ G DT +L LS+ + G Y C A + + V
Sbjct: 305 RAQAQLEGGLLGLGGHSASDTGSGMLFLSNITLAHAGKYECEASNAGGAARVPFRLLVNA 364
Query: 134 PAKPTTTPAPRPPTPAPTIASQPLSLRPEACRPAAGGAVHTRGLDFACDIYIWAPLAGTC 193
+ PA PP A S+P RPEA G++ R L A I A +A
Sbjct: 365 SRQQPQQPAQPPPPAARPAGSEP---RPEA------GSMAFRALGVATQTAIAAAIA--L 413
Query: 194 GVLLLSLVITLYCNHRNRRRVCKCP 218
L L++ + C R RR+ + P
Sbjct: 414 LALTALLLVAMICRRRRRRKKARGP 438
>gi|224994173 roundabout 1 isoform d [Homo sapiens]
Length = 1551
Score = 40.0 bits (92), Expect = 0.002
Identities = 40/142 (28%), Positives = 62/142 (43%), Gaps = 28/142 (19%)
Query: 19 ARPSQFRVSPLDRTWNLGETVELKCQVLLSNPTSGCSWLFQPRGAAASPTFLLYLSQNKP 78
+ P F V P D+ LG TV +C+ NP W + G+ L S P
Sbjct: 312 SEPPHFVVKPRDQVVALGRTVTFQCEA-TGNPQPAIFW--RREGSQN-----LLFSYQPP 363
Query: 79 KAAEGLDTQRFSGKRLGDTFVLTLSDFRRENEGYYFCSAL--SNSIMYFSHFVPVFLPAK 136
++ + RFS + GD LT+++ +R + GYY C L + SI+ ++ +
Sbjct: 364 QS-----SSRFSVSQTGD---LTITNVQRSDVGYYICQTLNVAGSIITKAYL-------E 408
Query: 137 PTTTPAPRPPTPAPTIASQPLS 158
T A RPP P I P++
Sbjct: 409 VTDVIADRPP---PVIRQGPVN 427
>gi|224994171 roundabout 1 isoform c [Homo sapiens]
Length = 1606
Score = 40.0 bits (92), Expect = 0.002
Identities = 40/142 (28%), Positives = 62/142 (43%), Gaps = 28/142 (19%)
Query: 19 ARPSQFRVSPLDRTWNLGETVELKCQVLLSNPTSGCSWLFQPRGAAASPTFLLYLSQNKP 78
+ P F V P D+ LG TV +C+ NP W + G+ L S P
Sbjct: 312 SEPPHFVVKPRDQVVALGRTVTFQCEA-TGNPQPAIFW--RREGSQN-----LLFSYQPP 363
Query: 79 KAAEGLDTQRFSGKRLGDTFVLTLSDFRRENEGYYFCSAL--SNSIMYFSHFVPVFLPAK 136
++ + RFS + GD LT+++ +R + GYY C L + SI+ ++ +
Sbjct: 364 QS-----SSRFSVSQTGD---LTITNVQRSDVGYYICQTLNVAGSIITKAYL-------E 408
Query: 137 PTTTPAPRPPTPAPTIASQPLS 158
T A RPP P I P++
Sbjct: 409 VTDVIADRPP---PVIRQGPVN 427
>gi|19743806 roundabout 1 isoform b [Homo sapiens]
Length = 1612
Score = 40.0 bits (92), Expect = 0.002
Identities = 41/145 (28%), Positives = 62/145 (42%), Gaps = 28/145 (19%)
Query: 16 LHAARPSQFRVSPLDRTWNLGETVELKCQVLLSNPTSGCSWLFQPRGAAASPTFLLYLSQ 75
L P F V P D+ LG TV +C+ NP W + G+ L S
Sbjct: 306 LTVQEPPHFVVKPRDQVVALGRTVTFQCEA-TGNPQPAIFW--RREGSQN-----LLFSY 357
Query: 76 NKPKAAEGLDTQRFSGKRLGDTFVLTLSDFRRENEGYYFCSAL--SNSIMYFSHFVPVFL 133
P++ + RFS + GD LT+++ +R + GYY C L + SI+ ++
Sbjct: 358 QPPQS-----SSRFSVSQTGD---LTITNVQRSDVGYYICQTLNVAGSIITKAYL----- 404
Query: 134 PAKPTTTPAPRPPTPAPTIASQPLS 158
+ T A RPP P I P++
Sbjct: 405 --EVTDVIADRPP---PVIRQGPVN 424
>gi|169218204 PREDICTED: similar to pre-B lymphocyte gene 1 [Homo
sapiens]
Length = 123
Score = 40.0 bits (92), Expect = 0.002
Identities = 38/122 (31%), Positives = 55/122 (45%), Gaps = 9/122 (7%)
Query: 1 MALPVTALLLPLALL-LHAARPS-QFRVSPLDRTWNLGETVELKCQVLLSNPTSGCSWLF 58
M + V A LL L LL L AR Q SP + ++G+ V + C+ +S +W
Sbjct: 1 MDMRVPAQLLGLLLLWLPGARCDIQLTQSPSFLSASVGDRVTITCRAS-QGISSYLAWYQ 59
Query: 59 QPRGAAASPTFLLYLSQNKPKAAEGLDTQRFSGKRLGDTFVLTLSDFRRENEGYYFCSAL 118
Q G A P L+Y + RFSG G F LT+S + E+ Y+C L
Sbjct: 60 QKPGKA--PKLLIYAASTLQSGVPS----RFSGSGSGTEFTLTISSLQPEDFATYYCQQL 113
Query: 119 SN 120
++
Sbjct: 114 NS 115
>gi|239748173 PREDICTED: similar to roundabout 1 isoform 1 [Homo
sapiens]
Length = 1562
Score = 40.0 bits (92), Expect = 0.002
Identities = 40/142 (28%), Positives = 62/142 (43%), Gaps = 28/142 (19%)
Query: 19 ARPSQFRVSPLDRTWNLGETVELKCQVLLSNPTSGCSWLFQPRGAAASPTFLLYLSQNKP 78
+ P F V P D+ LG TV +C+ NP W + G+ L S P
Sbjct: 312 SEPPHFVVKPRDQVVALGRTVTFQCEA-TGNPQPAIFW--RREGSQN-----LLFSYQPP 363
Query: 79 KAAEGLDTQRFSGKRLGDTFVLTLSDFRRENEGYYFCSAL--SNSIMYFSHFVPVFLPAK 136
++ + RFS + GD LT+++ +R + GYY C L + SI+ ++ +
Sbjct: 364 QS-----SSRFSVSQTGD---LTITNVQRSDVGYYICQTLNVAGSIITKAYL-------E 408
Query: 137 PTTTPAPRPPTPAPTIASQPLS 158
T A RPP P I P++
Sbjct: 409 VTDVIADRPP---PVIRQGPVN 427
>gi|239748171 PREDICTED: similar to roundabout 1 isoform 2 [Homo
sapiens]
Length = 1615
Score = 40.0 bits (92), Expect = 0.002
Identities = 40/142 (28%), Positives = 62/142 (43%), Gaps = 28/142 (19%)
Query: 19 ARPSQFRVSPLDRTWNLGETVELKCQVLLSNPTSGCSWLFQPRGAAASPTFLLYLSQNKP 78
+ P F V P D+ LG TV +C+ NP W + G+ L S P
Sbjct: 312 SEPPHFVVKPRDQVVALGRTVTFQCEA-TGNPQPAIFW--RREGSQN-----LLFSYQPP 363
Query: 79 KAAEGLDTQRFSGKRLGDTFVLTLSDFRRENEGYYFCSAL--SNSIMYFSHFVPVFLPAK 136
++ + RFS + GD LT+++ +R + GYY C L + SI+ ++ +
Sbjct: 364 QS-----SSRFSVSQTGD---LTITNVQRSDVGYYICQTLNVAGSIITKAYL-------E 408
Query: 137 PTTTPAPRPPTPAPTIASQPLS 158
T A RPP P I P++
Sbjct: 409 VTDVIADRPP---PVIRQGPVN 427
>gi|4506569 roundabout 1 isoform a [Homo sapiens]
Length = 1651
Score = 40.0 bits (92), Expect = 0.002
Identities = 41/145 (28%), Positives = 62/145 (42%), Gaps = 28/145 (19%)
Query: 16 LHAARPSQFRVSPLDRTWNLGETVELKCQVLLSNPTSGCSWLFQPRGAAASPTFLLYLSQ 75
L P F V P D+ LG TV +C+ NP W + G+ L S
Sbjct: 345 LTVQEPPHFVVKPRDQVVALGRTVTFQCEA-TGNPQPAIFW--RREGSQN-----LLFSY 396
Query: 76 NKPKAAEGLDTQRFSGKRLGDTFVLTLSDFRRENEGYYFCSAL--SNSIMYFSHFVPVFL 133
P++ + RFS + GD LT+++ +R + GYY C L + SI+ ++
Sbjct: 397 QPPQS-----SSRFSVSQTGD---LTITNVQRSDVGYYICQTLNVAGSIITKAYL----- 443
Query: 134 PAKPTTTPAPRPPTPAPTIASQPLS 158
+ T A RPP P I P++
Sbjct: 444 --EVTDVIADRPP---PVIRQGPVN 463
>gi|239754730 PREDICTED: similar to hCG1737378 [Homo sapiens]
Length = 179
Score = 39.3 bits (90), Expect = 0.003
Identities = 25/91 (27%), Positives = 44/91 (48%), Gaps = 7/91 (7%)
Query: 36 GETVELKCQVLLSNPTSGCSWLFQPRGAAASPT-FLLYLSQNKPKAAEGLDTQRFSGKRL 94
G+TV L+C +P SG L+ R FLL+ + + G+ RF +R
Sbjct: 30 GQTVTLRC-----DPISGHDNLYWYRRVMGKEIKFLLHFVKESKQDESGMPNNRFLAERT 84
Query: 95 GDTF-VLTLSDFRRENEGYYFCSALSNSIMY 124
G T+ L + E+ G YFC++ +++++
Sbjct: 85 GGTYSTLKVQPAELEDSGVYFCASSQDTVLH 115
>gi|126090663 zinc finger homeodomain 4 [Homo sapiens]
Length = 3571
Score = 38.5 bits (88), Expect = 0.005
Identities = 28/94 (29%), Positives = 37/94 (39%), Gaps = 8/94 (8%)
Query: 75 QNKPKAAEGLDTQRFSGKRLGDTF--VLTLSDFRRENEGYYFCSALSNSIMY-----FSH 127
Q K K+ EG +T + G F VL L + G +F A +
Sbjct: 1887 QKKGKSGEGENTDKLECGTCGKLFSNVLILKSHQEHVHGQFFPYAALEKFARQYREAYDK 1946
Query: 128 FVPVFLPAKPTTTPAPRPPTPAPTIASQPLSLRP 161
P+ P+ P T P P PP P P QP S+ P
Sbjct: 1947 LYPIS-PSSPETPPPPPPPPPLPPAPPQPSSMGP 1979
>gi|169167318 PREDICTED: similar to hCG2042707 [Homo sapiens]
Length = 142
Score = 37.4 bits (85), Expect = 0.011
Identities = 35/117 (29%), Positives = 51/117 (43%), Gaps = 9/117 (7%)
Query: 1 MALPVTALLLPLALL-LHAARPS-QFRVSPLDRTWNLGETVELKCQVLLSNPTSGCSWLF 58
M + V A LL L LL L R Q SP + ++G+ V + C+ ++ +W
Sbjct: 10 MDMRVPAQLLGLLLLWLPGTRCDIQMTQSPSSLSASVGDRVTITCRAS-QGISNSLAWYQ 68
Query: 59 QPRGAAASPTFLLYLSQNKPKAAEGLDTQRFSGKRLGDTFVLTLSDFRRENEGYYFC 115
Q G A P LLY + RFSG G + LT+S + E+ Y+C
Sbjct: 69 QKPGKA--PKLLLYAASRLESGVPS----RFSGSGSGTDYTLTISSLQPEDFATYYC 119
>gi|239754726 PREDICTED: similar to hCG2002986 [Homo sapiens]
Length = 189
Score = 36.6 bits (83), Expect = 0.019
Identities = 32/111 (28%), Positives = 48/111 (43%), Gaps = 10/111 (9%)
Query: 27 SPLDRTWNLGETVELKCQVLLSNPTSGCSWLFQPRGAAASPT-FLLYLSQNKPKAAEGLD 85
SP +G+ V L+C+ P SG +LF R L+Y + N P G+
Sbjct: 63 SPRHEVTEMGQEVTLRCK-----PISGHDYLFWYRQTMMRGLELLIYFNNNVPIDDSGMP 117
Query: 86 TQRFSGKRLGDTF-VLTLSDFRRENEGYYFC-SALSNSIMYFSHFVPVFLP 134
RFS K +F L + + YFC S+L+ ++ +H PV P
Sbjct: 118 EDRFSAKMPNASFSTLKIQPSEPRDSAVYFCASSLATALQ--NHPFPVQKP 166
>gi|193083163 roundabout, axon guidance receptor, homolog 2 isoform
ROBO2a [Homo sapiens]
Length = 1394
Score = 36.2 bits (82), Expect = 0.025
Identities = 31/99 (31%), Positives = 42/99 (42%), Gaps = 16/99 (16%)
Query: 21 PSQFRVSPLDRTWNLGETVELKCQVLLSNPTSGCSWLFQPRGAAASPTFLLYLSQNKPKA 80
P QF V P D+ G TV C+ NP W Q G+ L N+P+
Sbjct: 329 PPQFVVRPRDQIVAQGRTVTFPCETK-GNPQPAVFW--QKEGSQN------LLFPNQPQQ 379
Query: 81 AEGLDTQRFSGKRLGDTFVLTLSDFRRENEGYYFCSALS 119
R S GD LT+++ +R + GYY C AL+
Sbjct: 380 PNS----RCSVSPTGD---LTITNIQRSDAGYYICQALT 411
>gi|61888896 roundabout, axon guidance receptor, homolog 2 isoform
ROBO2b [Homo sapiens]
Length = 1378
Score = 36.2 bits (82), Expect = 0.025
Identities = 31/99 (31%), Positives = 42/99 (42%), Gaps = 16/99 (16%)
Query: 21 PSQFRVSPLDRTWNLGETVELKCQVLLSNPTSGCSWLFQPRGAAASPTFLLYLSQNKPKA 80
P QF V P D+ G TV C+ NP W Q G+ L N+P+
Sbjct: 313 PPQFVVRPRDQIVAQGRTVTFPCETK-GNPQPAVFW--QKEGSQN------LLFPNQPQQ 363
Query: 81 AEGLDTQRFSGKRLGDTFVLTLSDFRRENEGYYFCSALS 119
R S GD LT+++ +R + GYY C AL+
Sbjct: 364 PNS----RCSVSPTGD---LTITNIQRSDAGYYICQALT 395
>gi|151301154 mucin 6, gastric [Homo sapiens]
Length = 2439
Score = 34.7 bits (78), Expect = 0.073
Identities = 20/52 (38%), Positives = 23/52 (44%), Gaps = 4/52 (7%)
Query: 110 EGYYFCSALSNSIMYFSHFVPVFLPAKPTTTPAPRPPTPAPTIASQPLSLRP 161
EG Y CS YF H V +P P TTP P PT S+P + P
Sbjct: 1175 EGCYNCSQDE----YFDHEEGVCVPCMPPTTPQPPTTPQLPTTGSRPTQVWP 1222
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.323 0.137 0.438
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 10,742,342
Number of Sequences: 37866
Number of extensions: 570470
Number of successful extensions: 6528
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 93
Number of HSP's successfully gapped in prelim test: 150
Number of HSP's that attempted gapping in prelim test: 5648
Number of HSP's gapped (non-prelim): 944
length of query: 235
length of database: 18,247,518
effective HSP length: 99
effective length of query: 136
effective length of database: 14,498,784
effective search space: 1971834624
effective search space used: 1971834624
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 60 (27.7 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
Home |
Table of Contents |
Search text |
Search genes |
Search sequences |
Purchase |
FAQ |
Blog |
Help
Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.