Guide to the Human Genome
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Search of human proteins with 115527076

BLASTP 2.2.11 [Jun-05-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|115527076 src kinase associated phosphoprotein 1 isoform 2
[Homo sapiens]
         (358 letters)

Database: hs.faa 
           37,866 sequences; 18,247,518 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|115527076 src kinase associated phosphoprotein 1 isoform 2 [H...   743   0.0  
gi|115527074 src kinase associated phosphoprotein 1 isoform 1 [H...   738   0.0  
gi|16753212 src kinase associated phosphoprotein 2 [Homo sapiens]     293   2e-79
gi|11321634 CD2-associated protein [Homo sapiens]                      58   1e-08
gi|188497618 connector enhancer of kinase suppressor of Ras 1 [H...    55   1e-07
gi|194733753 phosphoinositide-binding protein PIP3-E isoform 1 [...    54   2e-07
gi|194733747 phosphoinositide-binding protein PIP3-E isoform 1 [...    54   2e-07
gi|40354212 phosphoinositide-binding protein PIP3-E isoform 2 [H...    54   2e-07
gi|41393057 connector enhancer of kinase suppressor of Ras 2 [Ho...    54   2e-07
gi|227430338 SH3 domain containing, Ysc84-like 1 isoform 2 [Homo...    53   5e-07
gi|52421790 mitogen-activated protein kinase kinase kinase 9 [Ho...    52   1e-06
gi|242117953 SH3 domain-containing protein C1orf113 isoform 1 [H...    51   2e-06
gi|242117948 SH3 domain-containing protein C1orf113 isoform 2 [H...    51   2e-06
gi|227430336 SH3 domain containing, Ysc84-like 1 isoform 1 [Homo...    50   2e-06
gi|154354979 myosin X [Homo sapiens]                                   50   4e-06
gi|93102364 SWAP-70 protein [Homo sapiens]                             49   7e-06
gi|109689723 abl interactor 2 [Homo sapiens]                           48   2e-05
gi|224994221 SH3-domain binding protein 2 isoform b [Homo sapiens]     47   2e-05
gi|224994219 SH3-domain binding protein 2 isoform c [Homo sapiens]     47   2e-05
gi|170014705 SH3-domain binding protein 2 isoform a [Homo sapiens]     47   2e-05
gi|170014703 SH3-domain binding protein 2 isoform a [Homo sapiens]     47   2e-05
gi|189491778 nephrocystin 1 isoform 4 [Homo sapiens]                   47   2e-05
gi|189491776 nephrocystin 1 isoform 3 [Homo sapiens]                   47   2e-05
gi|189491774 nephrocystin 1 isoform 2 [Homo sapiens]                   47   2e-05
gi|46397398 nephrocystin 1 isoform 1 [Homo sapiens]                    47   2e-05
gi|224586880 Ras protein-specific guanine nucleotide-releasing f...    47   3e-05
gi|24797099 Ras protein-specific guanine nucleotide-releasing fa...    47   3e-05
gi|47717125 intersectin 1 isoform ITSN-s [Homo sapiens]                47   3e-05
gi|47717123 intersectin 1 isoform ITSN-l [Homo sapiens]                47   3e-05
gi|188219625 signal transducing adaptor molecule 2 [Homo sapiens]      46   6e-05

>gi|115527076 src kinase associated phosphoprotein 1 isoform 2 [Homo
           sapiens]
          Length = 358

 Score =  743 bits (1918), Expect = 0.0
 Identities = 358/358 (100%), Positives = 358/358 (100%)

Query: 1   MQAAALPEEIRWLLEDAEEFLAEGLRNENLSAVARDHRDHILRGFQQIKARYYWDFQPQG 60
           MQAAALPEEIRWLLEDAEEFLAEGLRNENLSAVARDHRDHILRGFQQIKARYYWDFQPQG
Sbjct: 1   MQAAALPEEIRWLLEDAEEFLAEGLRNENLSAVARDHRDHILRGFQQIKARYYWDFQPQG 60

Query: 61  GDIGQDSSDDNHSGTLGLSLTSDAPFLSDYQDEGMEDIVKGAQELDNVIKQGYLEKKSKD 120
           GDIGQDSSDDNHSGTLGLSLTSDAPFLSDYQDEGMEDIVKGAQELDNVIKQGYLEKKSKD
Sbjct: 61  GDIGQDSSDDNHSGTLGLSLTSDAPFLSDYQDEGMEDIVKGAQELDNVIKQGYLEKKSKD 120

Query: 121 HSFFGSEWQKRWCVVSRGLFYYYANEKSKQPKGTFLIKGYGVRMAPHLRRDSKKESCFEL 180
           HSFFGSEWQKRWCVVSRGLFYYYANEKSKQPKGTFLIKGYGVRMAPHLRRDSKKESCFEL
Sbjct: 121 HSFFGSEWQKRWCVVSRGLFYYYANEKSKQPKGTFLIKGYGVRMAPHLRRDSKKESCFEL 180

Query: 181 TSQDRRSYEFTATSPAEARDWVDQISFLLKDLSSLTIPYEEDEEEEEKEETYDDIDGFDS 240
           TSQDRRSYEFTATSPAEARDWVDQISFLLKDLSSLTIPYEEDEEEEEKEETYDDIDGFDS
Sbjct: 181 TSQDRRSYEFTATSPAEARDWVDQISFLLKDLSSLTIPYEEDEEEEEKEETYDDIDGFDS 240

Query: 241 PSCGSQCRPTILPGSVGIKEPTEEKEEEDIYEVLPDEEHDLEEDESGTRRKGDYASYYQG 300
           PSCGSQCRPTILPGSVGIKEPTEEKEEEDIYEVLPDEEHDLEEDESGTRRKGDYASYYQG
Sbjct: 241 PSCGSQCRPTILPGSVGIKEPTEEKEEEDIYEVLPDEEHDLEEDESGTRRKGDYASYYQG 300

Query: 301 LWDCHGDQPDELSFQRGDLIRILSKEYNMYGWWVGELNSLVGIVPKEYLTTAFEVEER 358
           LWDCHGDQPDELSFQRGDLIRILSKEYNMYGWWVGELNSLVGIVPKEYLTTAFEVEER
Sbjct: 301 LWDCHGDQPDELSFQRGDLIRILSKEYNMYGWWVGELNSLVGIVPKEYLTTAFEVEER 358


>gi|115527074 src kinase associated phosphoprotein 1 isoform 1 [Homo
           sapiens]
          Length = 359

 Score =  738 bits (1906), Expect = 0.0
 Identities = 358/359 (99%), Positives = 358/359 (99%), Gaps = 1/359 (0%)

Query: 1   MQAAALPEEIRWLLEDAEEFLAEGLRNENLSAVARDHRDHILRGFQQIKARYYWDFQPQG 60
           MQAAALPEEIRWLLEDAEEFLAEGLRNENLSAVARDHRDHILRGFQQIKARYYWDFQPQG
Sbjct: 1   MQAAALPEEIRWLLEDAEEFLAEGLRNENLSAVARDHRDHILRGFQQIKARYYWDFQPQG 60

Query: 61  GDIGQDSSDDNHSGTLGLSLTSDAPFLSDYQDEGMEDIVKGAQELDNVIKQGYLEKKSKD 120
           GDIGQDSSDDNHSGTLGLSLTSDAPFLSDYQDEGMEDIVKGAQELDNVIKQGYLEKKSKD
Sbjct: 61  GDIGQDSSDDNHSGTLGLSLTSDAPFLSDYQDEGMEDIVKGAQELDNVIKQGYLEKKSKD 120

Query: 121 HSFFGSEWQKRWCVVSRGLFYYYANEKSKQPKGTFLIKGYGVRMAPHLRRDSKKESCFEL 180
           HSFFGSEWQKRWCVVSRGLFYYYANEKSKQPKGTFLIKGYGVRMAPHLRRDSKKESCFEL
Sbjct: 121 HSFFGSEWQKRWCVVSRGLFYYYANEKSKQPKGTFLIKGYGVRMAPHLRRDSKKESCFEL 180

Query: 181 TSQDRRSYEFTATSPAEARDWVDQISFLLKDLSSLTIPYEEDEEEEEKEETYDDIDGFDS 240
           TSQDRRSYEFTATSPAEARDWVDQISFLLKDLSSLTIPYEEDEEEEEKEETYDDIDGFDS
Sbjct: 181 TSQDRRSYEFTATSPAEARDWVDQISFLLKDLSSLTIPYEEDEEEEEKEETYDDIDGFDS 240

Query: 241 PSCGSQCRPTILPGSVGIKEPTEEKEEEDIYEVLPDEEHDLEEDESGTRRKG-DYASYYQ 299
           PSCGSQCRPTILPGSVGIKEPTEEKEEEDIYEVLPDEEHDLEEDESGTRRKG DYASYYQ
Sbjct: 241 PSCGSQCRPTILPGSVGIKEPTEEKEEEDIYEVLPDEEHDLEEDESGTRRKGVDYASYYQ 300

Query: 300 GLWDCHGDQPDELSFQRGDLIRILSKEYNMYGWWVGELNSLVGIVPKEYLTTAFEVEER 358
           GLWDCHGDQPDELSFQRGDLIRILSKEYNMYGWWVGELNSLVGIVPKEYLTTAFEVEER
Sbjct: 301 GLWDCHGDQPDELSFQRGDLIRILSKEYNMYGWWVGELNSLVGIVPKEYLTTAFEVEER 359


>gi|16753212 src kinase associated phosphoprotein 2 [Homo sapiens]
          Length = 359

 Score =  293 bits (750), Expect = 2e-79
 Identities = 158/369 (42%), Positives = 224/369 (60%), Gaps = 41/369 (11%)

Query: 6   LPEEIRWLLEDAEEFLAEGLRNENLSAVARDHRDHILRGFQQIKARYYWDFQPQGGDIGQ 65
           LPEEIR LL D E F+A+ L+ ENLS  A++ R+ +++  + +K+ Y  +FQ +G     
Sbjct: 13  LPEEIRNLLADVETFVADILKGENLSKKAKEKRESLIKKIKDVKSIYLQEFQDKGDAEDG 72

Query: 66  DSSDDNHSGTLG-LSLTSDAPFLSDYQDEGMEDIVK----GAQELDNVIKQGYLEKKSKD 120
           +  DD  +G    +SL S+     D  DE   D  +     AQ+L  V+K GYLEK+ KD
Sbjct: 73  EEYDDPFAGPPDTISLASER---YDKDDEAPSDGAQFPPIAAQDLPFVLKAGYLEKRRKD 129

Query: 121 HSFFGSEWQKRWCVVSRGLFYYYANEKSKQPKGTFLIKGYGVRMAPHLRRDSKKESCFEL 180
           HSF G EWQKRWC +S+ +FYYY ++K KQ KG F I GY VRM   LR+D KK+ CFE+
Sbjct: 130 HSFLGFEWQKRWCALSKTVFYYYGSDKDKQQKGEFAIDGYSVRMNNTLRKDGKKDCCFEI 189

Query: 181 TSQDRRSYEFTATSPAEARDWVDQISFLLKDLSSLTIPYEEDEEEEEKEETYDDIDGFDS 240
           ++ D+R Y+FTA SP +A +WV Q+ F+L+D+ S  IP    E+ +E+ E YDD+D    
Sbjct: 190 SAPDKRIYQFTAASPKDAEEWVQQLKFVLQDMESDIIP----EDYDERGELYDDVD---- 241

Query: 241 PSCGSQCRPTILPGSVGIKEPTEEKEEEDIYEVLPDEEHD-----LEEDESGTR------ 289
                   P  +   +   +P     +++IYE LP+EE D     +EE    ++      
Sbjct: 242 -------HPLPISNPLTSSQPI----DDEIYEELPEEEEDSAPVKVEEQRKMSQDSVHHT 290

Query: 290 ---RKGDYASYYQGLWDCHGDQPDELSFQRGDLIRILSKEYNMYGWWVGELNSLVGIVPK 346
              +  DYA++YQGLWDC G   DELSF+RGD+I ILSKEYN YGWWVGE+   +G+VPK
Sbjct: 291 SGDKSTDYANFYQGLWDCTGAFSDELSFKRGDVIYILSKEYNRYGWWVGEMKGAIGLVPK 350

Query: 347 EYLTTAFEV 355
            Y+   +++
Sbjct: 351 AYIMEMYDI 359


>gi|11321634 CD2-associated protein [Homo sapiens]
          Length = 639

 Score = 57.8 bits (138), Expect = 1e-08
 Identities = 32/98 (32%), Positives = 51/98 (52%), Gaps = 2/98 (2%)

Query: 262 TEEKEEED--IYEVLPDEEHDLEEDESGTRRKGDYASYYQGLWDCHGDQPDELSFQRGDL 319
           TEEK+ E   I + L  +   +E  ++ T  K     Y + L+   G   DEL+F+ G++
Sbjct: 236 TEEKKPEKPLILQSLGPKTQSVEITKTDTEGKIKAKEYCRTLFAYEGTNEDELTFKEGEI 295

Query: 320 IRILSKEYNMYGWWVGELNSLVGIVPKEYLTTAFEVEE 357
           I ++SKE    GWW GELN   G+ P  +     E+++
Sbjct: 296 IHLISKETGEAGWWRGELNGKEGVFPDNFAVQINELDK 333



 Score = 33.5 bits (75), Expect = 0.30
 Identities = 16/40 (40%), Positives = 23/40 (57%), Gaps = 2/40 (5%)

Query: 310 DELSFQRGDLIRILSKEYNMYGWWVGELNSLVGIVPKEYL 349
           DEL  + GD+I I   E    GWW G LN+ +G+ P  ++
Sbjct: 125 DELELKVGDIIDI--NEEVEEGWWSGTLNNKLGLFPSNFV 162



 Score = 30.0 bits (66), Expect = 3.3
 Identities = 16/48 (33%), Positives = 26/48 (54%), Gaps = 1/48 (2%)

Query: 302 WDCHGDQPDELSFQRGDLIRILSKEYNMYGWWVGELNSLVGIVPKEYL 349
           +D      DEL+ + G++IR + K+    GW  GELN   G+ P  ++
Sbjct: 8   YDYDAVHDDELTIRVGEIIRNV-KKLQEEGWLEGELNGRRGMFPDNFV 54


>gi|188497618 connector enhancer of kinase suppressor of Ras 1 [Homo
           sapiens]
          Length = 713

 Score = 55.1 bits (131), Expect = 1e-07
 Identities = 52/228 (22%), Positives = 85/228 (37%), Gaps = 12/228 (5%)

Query: 73  SGTLGLSLTSDAPFLSDYQDEGMEDIVK----GAQELDNVIKQGYLEKKSKDHSFFGSEW 128
           +GT GL  + D   +   + +G+   +       +EL      G+L  +     F G  W
Sbjct: 358 AGTPGLPESPDKSPVGRKKSKGLATRLSRRRVSCRELGRPDCDGWLLLRKAPGGFMGPRW 417

Query: 129 QKRWCVVSRGLFYYYANEKSKQPKGTFLIKGYGVRMAPHLRRDSKKESCFELTSQDRRSY 188
           ++RW V+     Y+Y   + ++ +G   +  Y +        D KK+  F+LT    + +
Sbjct: 418 RRRWFVLKGHTLYWYRQPQDEKAEGLINVSNYSLESG----HDQKKKYVFQLTHDVYKPF 473

Query: 189 EFTATSPAEARDWVDQISFLLKDLSS---LTIPYEEDEEEEEKEETYDDIDGFDSPSCGS 245
            F A +  +   WV  +   +    S      P EED   E + E  DD  G  S S   
Sbjct: 474 IFAADTLTDLSMWVRHLITCISKYQSPGRAPPPREEDCYSETEAEDPDDEAGSHSASPSP 533

Query: 246 QCRPTILPGSVG-IKEPTEEKEEEDIYEVLPDEEHDLEEDESGTRRKG 292
               + L G       PT+         +    E  LE    G R+ G
Sbjct: 534 AQAGSPLHGDTSPAATPTQRSPRTSFGSLTDSSEEALEGMVRGLRQGG 581


>gi|194733753 phosphoinositide-binding protein PIP3-E isoform 1
           [Homo sapiens]
          Length = 438

 Score = 54.3 bits (129), Expect = 2e-07
 Identities = 30/127 (23%), Positives = 64/127 (50%), Gaps = 7/127 (5%)

Query: 103 QELDNVIKQGYLEKKSKDHSFFGSEWQKRWCVVSRGLFYYYANEKSKQPKGTFLIKGYGV 162
           ++L +   QG+L KK +  SF  ++W+K W ++     Y+Y+N+ +++  G   +  + V
Sbjct: 38  KDLGHADCQGWLYKKKEKGSFLSNKWKKFWVILKGSSLYWYSNQMAEKADGFVNLPDFTV 97

Query: 163 RMAPHLRRDSKKESCFELTSQDRRSYEFTATSPAEARDWVDQISFLLKDLSSLTIP---Y 219
             A     + KK+  F+++    +++ F A +  E   W++++   +    S T     Y
Sbjct: 98  ERA----SECKKKHAFKISHPQIKTFYFAAENVQEMNVWLNKLGSAVIHQESTTKDEECY 153

Query: 220 EEDEEEE 226
            E E+E+
Sbjct: 154 SESEQED 160


>gi|194733747 phosphoinositide-binding protein PIP3-E isoform 1
           [Homo sapiens]
          Length = 438

 Score = 54.3 bits (129), Expect = 2e-07
 Identities = 30/127 (23%), Positives = 64/127 (50%), Gaps = 7/127 (5%)

Query: 103 QELDNVIKQGYLEKKSKDHSFFGSEWQKRWCVVSRGLFYYYANEKSKQPKGTFLIKGYGV 162
           ++L +   QG+L KK +  SF  ++W+K W ++     Y+Y+N+ +++  G   +  + V
Sbjct: 38  KDLGHADCQGWLYKKKEKGSFLSNKWKKFWVILKGSSLYWYSNQMAEKADGFVNLPDFTV 97

Query: 163 RMAPHLRRDSKKESCFELTSQDRRSYEFTATSPAEARDWVDQISFLLKDLSSLTIP---Y 219
             A     + KK+  F+++    +++ F A +  E   W++++   +    S T     Y
Sbjct: 98  ERA----SECKKKHAFKISHPQIKTFYFAAENVQEMNVWLNKLGSAVIHQESTTKDEECY 153

Query: 220 EEDEEEE 226
            E E+E+
Sbjct: 154 SESEQED 160


>gi|40354212 phosphoinositide-binding protein PIP3-E isoform 2 [Homo
           sapiens]
          Length = 437

 Score = 54.3 bits (129), Expect = 2e-07
 Identities = 30/127 (23%), Positives = 64/127 (50%), Gaps = 7/127 (5%)

Query: 103 QELDNVIKQGYLEKKSKDHSFFGSEWQKRWCVVSRGLFYYYANEKSKQPKGTFLIKGYGV 162
           ++L +   QG+L KK +  SF  ++W+K W ++     Y+Y+N+ +++  G   +  + V
Sbjct: 37  KDLGHADCQGWLYKKKEKGSFLSNKWKKFWVILKGSSLYWYSNQMAEKADGFVNLPDFTV 96

Query: 163 RMAPHLRRDSKKESCFELTSQDRRSYEFTATSPAEARDWVDQISFLLKDLSSLTIP---Y 219
             A     + KK+  F+++    +++ F A +  E   W++++   +    S T     Y
Sbjct: 97  ERA----SECKKKHAFKISHPQIKTFYFAAENVQEMNVWLNKLGSAVIHQESTTKDEECY 152

Query: 220 EEDEEEE 226
            E E+E+
Sbjct: 153 SESEQED 159


>gi|41393057 connector enhancer of kinase suppressor of Ras 2 [Homo
           sapiens]
          Length = 1034

 Score = 54.3 bits (129), Expect = 2e-07
 Identities = 35/141 (24%), Positives = 66/141 (46%), Gaps = 13/141 (9%)

Query: 111 QGYLEKKSKDHSFFGSEWQKRWCVVSRGLFYYYANEKSKQPKGTFLIKGYGVRMAPHLRR 170
           +G+L KK    S+F  +W+K W V+     Y+Y NE+ ++ +G   +  + +  A   R 
Sbjct: 574 EGWLWKKKDAKSYFSQKWKKYWFVLKDASLYWYINEEDEKAEGFISLPEFKIDRASECR- 632

Query: 171 DSKKESCFELTSQDRRSYEFTATSPAEARDWVDQISFLLKDLSSLTIPYEEDEEEEEKEE 230
              K+  F+      +S+ F A    +   W+++I+        LT  Y E E  +++++
Sbjct: 633 ---KKYAFKACHPKIKSFYFAAEHLDDMNRWLNRINM-------LTAGYAERERIKQEQD 682

Query: 231 TYDDID--GFDSPSCGSQCRP 249
            + + D    D+PS   Q  P
Sbjct: 683 YWSESDKEEADTPSTPKQDSP 703


>gi|227430338 SH3 domain containing, Ysc84-like 1 isoform 2 [Homo
           sapiens]
          Length = 323

 Score = 52.8 bits (125), Expect = 5e-07
 Identities = 34/150 (22%), Positives = 63/150 (42%), Gaps = 13/150 (8%)

Query: 207 FLLKDLSSLTIPYEEDEEEEEKEETYDDIDGFDSPSCGSQCRPTILPGSVGIKEPTEEKE 266
           F  +D+ +  I + +     + E+ Y+ +D F         R       +  ++   E+ 
Sbjct: 179 FYCQDIRAYDILFGDTPRPAQAEDLYEILDSFTEKYENEGQR-------INARKAAREQR 231

Query: 267 EEDIYEVLPDEEHDLEEDE------SGTRRKGDYASYYQGLWDCHGDQPDELSFQRGDLI 320
           +    E+ P      ++        SG++   +       L+   G QP +L+FQ GD I
Sbjct: 232 KSSAKELPPKPLSRPQQSSAPVQLNSGSQSNLNQPIEVTALYSFEGQQPGDLNFQAGDRI 291

Query: 321 RILSKEYNMYGWWVGELNSLVGIVPKEYLT 350
            ++SK  + + WW G+L    GI P  Y+T
Sbjct: 292 TVISKTDSHFDWWEGKLRGQTGIFPANYVT 321


>gi|52421790 mitogen-activated protein kinase kinase kinase 9 [Homo
           sapiens]
          Length = 1118

 Score = 51.6 bits (122), Expect = 1e-06
 Identities = 32/106 (30%), Positives = 49/106 (46%), Gaps = 21/106 (19%)

Query: 253 PGSVGIKEPTEEKEEEDIYEVLPDEEHDLEEDESGTRRKGDYAS-----YYQGLWDCHGD 307
           PG  G     EE+EEE             EE+ +     G+        Y+  +++    
Sbjct: 20  PGEDGAGAGAEEEEEE-------------EEEAAAAVGPGELGCDAPLPYWTAVFEYEAA 66

Query: 308 QPDELSFQRGDLIRILSKEYNMYG---WWVGELNSLVGIVPKEYLT 350
             DEL+ + GD++ +LSK+  + G   WW G+LN  VGI P  Y+T
Sbjct: 67  GEDELTLRLGDVVEVLSKDSQVSGDEGWWTGQLNQRVGIFPSNYVT 112


>gi|242117953 SH3 domain-containing protein C1orf113 isoform 1 [Homo
           sapiens]
          Length = 756

 Score = 50.8 bits (120), Expect = 2e-06
 Identities = 31/109 (28%), Positives = 48/109 (44%), Gaps = 16/109 (14%)

Query: 241 PSCGSQCRPTILPGSVGIKEPTEEKEEEDIYEVLPDEEHDLEEDESGTRRKGDYASYYQG 300
           PS G+   P++ PG          K     Y+  PD    +   E            Y+ 
Sbjct: 145 PSLGNPDMPSVSPGP-----QRPPKLSSLAYDSPPDYLQTVSHPE-----------VYRV 188

Query: 301 LWDCHGDQPDELSFQRGDLIRILSKEYNMYGWWVGELNSLVGIVPKEYL 349
           L+D   + PDEL+ +RGD++++LSK     GWW GE     G+ P  ++
Sbjct: 189 LFDYQPEAPDELALRRGDVVKVLSKTTEDKGWWEGECQGRRGVFPDNFV 237



 Score = 35.0 bits (79), Expect = 0.10
 Identities = 13/43 (30%), Positives = 26/43 (60%), Gaps = 2/43 (4%)

Query: 307 DQPDELSFQRGDLIRILSKEYNMYGWWVGELNSLVGIVPKEYL 349
           +Q DEL  Q G+++ ++ +  +  GWW+G+ N  +G  P  ++
Sbjct: 97  EQADELKLQAGEIVEMIKEIED--GWWLGKKNGQLGAFPSNFV 137


>gi|242117948 SH3 domain-containing protein C1orf113 isoform 2 [Homo
           sapiens]
          Length = 645

 Score = 50.8 bits (120), Expect = 2e-06
 Identities = 31/109 (28%), Positives = 48/109 (44%), Gaps = 16/109 (14%)

Query: 241 PSCGSQCRPTILPGSVGIKEPTEEKEEEDIYEVLPDEEHDLEEDESGTRRKGDYASYYQG 300
           PS G+   P++ PG          K     Y+  PD    +   E            Y+ 
Sbjct: 34  PSLGNPDMPSVSPGP-----QRPPKLSSLAYDSPPDYLQTVSHPE-----------VYRV 77

Query: 301 LWDCHGDQPDELSFQRGDLIRILSKEYNMYGWWVGELNSLVGIVPKEYL 349
           L+D   + PDEL+ +RGD++++LSK     GWW GE     G+ P  ++
Sbjct: 78  LFDYQPEAPDELALRRGDVVKVLSKTTEDKGWWEGECQGRRGVFPDNFV 126


>gi|227430336 SH3 domain containing, Ysc84-like 1 isoform 1 [Homo
           sapiens]
          Length = 342

 Score = 50.4 bits (119), Expect = 2e-06
 Identities = 21/50 (42%), Positives = 30/50 (60%)

Query: 301 LWDCHGDQPDELSFQRGDLIRILSKEYNMYGWWVGELNSLVGIVPKEYLT 350
           L+   G QP +L+FQ GD I ++SK  + + WW G+L    GI P  Y+T
Sbjct: 291 LYSFEGQQPGDLNFQAGDRITVISKTDSHFDWWEGKLRGQTGIFPANYVT 340


>gi|154354979 myosin X [Homo sapiens]
          Length = 2058

 Score = 49.7 bits (117), Expect = 4e-06
 Identities = 30/99 (30%), Positives = 49/99 (49%), Gaps = 7/99 (7%)

Query: 109  IKQGYLEKKSKDHSFFGSE-WQKRWCVVSRGLFYYYANEKSKQPKGTFLIKGYGVRMAPH 167
            +KQG+L KK    S      W+KRW V+ +    Y+ N+  ++ KGT       VR A  
Sbjct: 1214 LKQGWLHKKGGGSSTLSRRNWKKRWFVLRQSKLMYFENDSEEKLKGT-----VEVRTAKE 1268

Query: 168  LRRDSKKESCFELTSQDRRSYEFTATSPAEARDWVDQIS 206
            +  ++ KE+  ++   D R++   A SP +A  W   +S
Sbjct: 1269 IIDNTTKENGIDIIMAD-RTFHLIAESPEDASQWFSVLS 1306


>gi|93102364 SWAP-70 protein [Homo sapiens]
          Length = 585

 Score = 48.9 bits (115), Expect = 7e-06
 Identities = 33/124 (26%), Positives = 57/124 (45%), Gaps = 9/124 (7%)

Query: 107 NVIKQGYLEKKSKDHSFFGSEWQKRWCVVSRGLFYYYANEKSKQPKGTFLI-KGYGVRMA 165
           +V+KQGY+ KK          W +RW V+   +  YY +E  K  KG  L+ +   V   
Sbjct: 210 DVLKQGYMMKKGHRRK----NWTERWFVLKPNIISYYVSEDLKDKKGDILLDENCCVESL 265

Query: 166 PHLRRDSKKESCFELTSQDRRSYEFTATSPAEARDWVDQISFLLKDLSSLTIPYEEDEEE 225
           P   +D KK  C  L     +++E +A+   + ++W+  I   +  L   + P  ++  +
Sbjct: 266 PD--KDGKK--CLFLVKCFDKTFEISASDKKKKQEWIQAIHSTIHLLKLGSPPPHKEARQ 321

Query: 226 EEKE 229
             KE
Sbjct: 322 RRKE 325


>gi|109689723 abl interactor 2 [Homo sapiens]
          Length = 475

 Score = 47.8 bits (112), Expect = 2e-05
 Identities = 31/97 (31%), Positives = 47/97 (48%), Gaps = 5/97 (5%)

Query: 261 PTEEKEEEDIYEVLPDEEHDLEEDESGTRRKGDYASYYQGLWDCHGDQPDELSFQRGDLI 320
           P E+ EEE+   V   + +  EED     R   Y      ++D   D+ DELSFQ G +I
Sbjct: 384 PPEDYEEEEAAVVEYSDPY-AEEDPPWAPRS--YLEKVVAIYDYTKDKEDELSFQEGAII 440

Query: 321 RILSKEYNMYGWWVGELNSLVGIVPKEYLTTAFEVEE 357
            ++ K  N  GW+ G +N + G+ P  Y+ +     E
Sbjct: 441 YVIKK--NDDGWYEGVMNGVTGLFPGNYVESIMHYSE 475


>gi|224994221 SH3-domain binding protein 2 isoform b [Homo sapiens]
          Length = 618

 Score = 47.4 bits (111), Expect = 2e-05
 Identities = 48/190 (25%), Positives = 81/190 (42%), Gaps = 30/190 (15%)

Query: 101 GAQEL----DNVIKQGYLEKKSKDHSFFGSEWQKRWCVVSRGLFYYYANEKSKQPKGTFL 156
           GAQ L      V K GYL KK         +W  R+ ++ +   YY+ +  S  P+G F 
Sbjct: 73  GAQNLLTMPGGVAKAGYLHKKGGTQLQL-LKWPLRFVIIHKRCVYYFKSSTSASPQGAFS 131

Query: 157 IKGYGVRMAPHLRRDSKKESCFEL--TSQDRRSYEFTATSPAEARDWVDQISFLLKDLSS 214
           + GY   M       S     F++   S+  R++ F+A+S  E + W   ++ L +++  
Sbjct: 132 LSGYNRVMRAAEETTSNNVFPFKIIHISKKHRTWFFSASSEEERKSW---MALLRREIGH 188

Query: 215 LTIPYEEDEEEEEKEETYDDIDGFDSPSCGSQCRPTILPGSVGIKEPTEEKEEEDIYEVL 274
               +E+ +   +  ++  D D F     G+  RP  +  S     PT+ +         
Sbjct: 189 F---HEKKDLPLDTSDSSSDTDSF----YGAVERPVDISLS---PYPTDNE--------- 229

Query: 275 PDEEHDLEED 284
            D EHD E+D
Sbjct: 230 -DYEHDDEDD 238


>gi|224994219 SH3-domain binding protein 2 isoform c [Homo sapiens]
          Length = 589

 Score = 47.4 bits (111), Expect = 2e-05
 Identities = 48/190 (25%), Positives = 81/190 (42%), Gaps = 30/190 (15%)

Query: 101 GAQEL----DNVIKQGYLEKKSKDHSFFGSEWQKRWCVVSRGLFYYYANEKSKQPKGTFL 156
           GAQ L      V K GYL KK         +W  R+ ++ +   YY+ +  S  P+G F 
Sbjct: 44  GAQNLLTMPGGVAKAGYLHKKGGTQLQL-LKWPLRFVIIHKRCVYYFKSSTSASPQGAFS 102

Query: 157 IKGYGVRMAPHLRRDSKKESCFEL--TSQDRRSYEFTATSPAEARDWVDQISFLLKDLSS 214
           + GY   M       S     F++   S+  R++ F+A+S  E + W   ++ L +++  
Sbjct: 103 LSGYNRVMRAAEETTSNNVFPFKIIHISKKHRTWFFSASSEEERKSW---MALLRREIGH 159

Query: 215 LTIPYEEDEEEEEKEETYDDIDGFDSPSCGSQCRPTILPGSVGIKEPTEEKEEEDIYEVL 274
               +E+ +   +  ++  D D F     G+  RP  +  S     PT+ +         
Sbjct: 160 F---HEKKDLPLDTSDSSSDTDSF----YGAVERPVDISLS---PYPTDNE--------- 200

Query: 275 PDEEHDLEED 284
            D EHD E+D
Sbjct: 201 -DYEHDDEDD 209


>gi|170014705 SH3-domain binding protein 2 isoform a [Homo sapiens]
          Length = 561

 Score = 47.4 bits (111), Expect = 2e-05
 Identities = 48/190 (25%), Positives = 81/190 (42%), Gaps = 30/190 (15%)

Query: 101 GAQEL----DNVIKQGYLEKKSKDHSFFGSEWQKRWCVVSRGLFYYYANEKSKQPKGTFL 156
           GAQ L      V K GYL KK         +W  R+ ++ +   YY+ +  S  P+G F 
Sbjct: 16  GAQNLLTMPGGVAKAGYLHKKGGTQLQL-LKWPLRFVIIHKRCVYYFKSSTSASPQGAFS 74

Query: 157 IKGYGVRMAPHLRRDSKKESCFEL--TSQDRRSYEFTATSPAEARDWVDQISFLLKDLSS 214
           + GY   M       S     F++   S+  R++ F+A+S  E + W   ++ L +++  
Sbjct: 75  LSGYNRVMRAAEETTSNNVFPFKIIHISKKHRTWFFSASSEEERKSW---MALLRREIGH 131

Query: 215 LTIPYEEDEEEEEKEETYDDIDGFDSPSCGSQCRPTILPGSVGIKEPTEEKEEEDIYEVL 274
               +E+ +   +  ++  D D F     G+  RP  +  S     PT+ +         
Sbjct: 132 F---HEKKDLPLDTSDSSSDTDSF----YGAVERPVDISLS---PYPTDNE--------- 172

Query: 275 PDEEHDLEED 284
            D EHD E+D
Sbjct: 173 -DYEHDDEDD 181


>gi|170014703 SH3-domain binding protein 2 isoform a [Homo sapiens]
          Length = 561

 Score = 47.4 bits (111), Expect = 2e-05
 Identities = 48/190 (25%), Positives = 81/190 (42%), Gaps = 30/190 (15%)

Query: 101 GAQEL----DNVIKQGYLEKKSKDHSFFGSEWQKRWCVVSRGLFYYYANEKSKQPKGTFL 156
           GAQ L      V K GYL KK         +W  R+ ++ +   YY+ +  S  P+G F 
Sbjct: 16  GAQNLLTMPGGVAKAGYLHKKGGTQLQL-LKWPLRFVIIHKRCVYYFKSSTSASPQGAFS 74

Query: 157 IKGYGVRMAPHLRRDSKKESCFEL--TSQDRRSYEFTATSPAEARDWVDQISFLLKDLSS 214
           + GY   M       S     F++   S+  R++ F+A+S  E + W   ++ L +++  
Sbjct: 75  LSGYNRVMRAAEETTSNNVFPFKIIHISKKHRTWFFSASSEEERKSW---MALLRREIGH 131

Query: 215 LTIPYEEDEEEEEKEETYDDIDGFDSPSCGSQCRPTILPGSVGIKEPTEEKEEEDIYEVL 274
               +E+ +   +  ++  D D F     G+  RP  +  S     PT+ +         
Sbjct: 132 F---HEKKDLPLDTSDSSSDTDSF----YGAVERPVDISLS---PYPTDNE--------- 172

Query: 275 PDEEHDLEED 284
            D EHD E+D
Sbjct: 173 -DYEHDDEDD 181


>gi|189491778 nephrocystin 1 isoform 4 [Homo sapiens]
          Length = 614

 Score = 47.4 bits (111), Expect = 2e-05
 Identities = 32/104 (30%), Positives = 51/104 (49%), Gaps = 9/104 (8%)

Query: 261 PTEEKEEEDIY--EVLPDEEHDLEED----ESGTRRKGDYASYYQGLWDCHGDQPDELSF 314
           PTEE+EE +    E    EE D EE+    E     K      Y  + D    Q  +L+F
Sbjct: 52  PTEEEEESESEDSEDSGGEEEDAEEEEEEKEENESHKWSTGEEYIAVGDFTAQQVGDLTF 111

Query: 315 QRGDLIRILSKEYNMYGWWVG-ELNSLVGIVPKEYLTTAFEVEE 357
           ++G+++ ++ K+ +  GWW+  +     G+VP+ YL    E EE
Sbjct: 112 KKGEILLVIEKKPD--GWWIAKDAKGNEGLVPRTYLEPYSEEEE 153


>gi|189491776 nephrocystin 1 isoform 3 [Homo sapiens]
          Length = 677

 Score = 47.4 bits (111), Expect = 2e-05
 Identities = 32/104 (30%), Positives = 51/104 (49%), Gaps = 9/104 (8%)

Query: 261 PTEEKEEEDIY--EVLPDEEHDLEED----ESGTRRKGDYASYYQGLWDCHGDQPDELSF 314
           PTEE+EE +    E    EE D EE+    E     K      Y  + D    Q  +L+F
Sbjct: 114 PTEEEEESESEDSEDSGGEEEDAEEEEEEKEENESHKWSTGEEYIAVGDFTAQQVGDLTF 173

Query: 315 QRGDLIRILSKEYNMYGWWVG-ELNSLVGIVPKEYLTTAFEVEE 357
           ++G+++ ++ K+ +  GWW+  +     G+VP+ YL    E EE
Sbjct: 174 KKGEILLVIEKKPD--GWWIAKDAKGNEGLVPRTYLEPYSEEEE 215


>gi|189491774 nephrocystin 1 isoform 2 [Homo sapiens]
          Length = 732

 Score = 47.4 bits (111), Expect = 2e-05
 Identities = 32/104 (30%), Positives = 51/104 (49%), Gaps = 9/104 (8%)

Query: 261 PTEEKEEEDIY--EVLPDEEHDLEED----ESGTRRKGDYASYYQGLWDCHGDQPDELSF 314
           PTEE+EE +    E    EE D EE+    E     K      Y  + D    Q  +L+F
Sbjct: 114 PTEEEEESESEDSEDSGGEEEDAEEEEEEKEENESHKWSTGEEYIAVGDFTAQQVGDLTF 173

Query: 315 QRGDLIRILSKEYNMYGWWVG-ELNSLVGIVPKEYLTTAFEVEE 357
           ++G+++ ++ K+ +  GWW+  +     G+VP+ YL    E EE
Sbjct: 174 KKGEILLVIEKKPD--GWWIAKDAKGNEGLVPRTYLEPYSEEEE 215


>gi|46397398 nephrocystin 1 isoform 1 [Homo sapiens]
          Length = 733

 Score = 47.4 bits (111), Expect = 2e-05
 Identities = 32/104 (30%), Positives = 51/104 (49%), Gaps = 9/104 (8%)

Query: 261 PTEEKEEEDIY--EVLPDEEHDLEED----ESGTRRKGDYASYYQGLWDCHGDQPDELSF 314
           PTEE+EE +    E    EE D EE+    E     K      Y  + D    Q  +L+F
Sbjct: 114 PTEEEEESESEDSEDSGGEEEDAEEEEEEKEENESHKWSTGEEYIAVGDFTAQQVGDLTF 173

Query: 315 QRGDLIRILSKEYNMYGWWVG-ELNSLVGIVPKEYLTTAFEVEE 357
           ++G+++ ++ K+ +  GWW+  +     G+VP+ YL    E EE
Sbjct: 174 KKGEILLVIEKKPD--GWWIAKDAKGNEGLVPRTYLEPYSEEEE 215


>gi|224586880 Ras protein-specific guanine nucleotide-releasing
           factor 1 isoform 3 [Homo sapiens]
          Length = 1257

 Score = 46.6 bits (109), Expect = 3e-05
 Identities = 24/105 (22%), Positives = 53/105 (50%), Gaps = 12/105 (11%)

Query: 110 KQGYLEKKSKDHSFFGSEWQKRWCVVSRGLFYYYANEKSKQPKGTFLIKGYGVRMAP--- 166
           ++GYL K+S D++    +WQ +W  + + L +Y+ ++ S +P G +L++G     AP   
Sbjct: 25  RKGYLSKRSSDNT----KWQTKWFALLQNLLFYFESDSSSRPSGLYLLEGCVCDRAPSPK 80

Query: 167 ---HLRRDSKKESCF--ELTSQDRRSYEFTATSPAEARDWVDQIS 206
                +   +K+  F    + +++++ E       +  +WV  I+
Sbjct: 81  PALSAKEPLEKQHYFTVNFSHENQKALELRTEDAKDCDEWVAAIA 125


>gi|24797099 Ras protein-specific guanine nucleotide-releasing
           factor 1 isoform 1 [Homo sapiens]
          Length = 1273

 Score = 46.6 bits (109), Expect = 3e-05
 Identities = 24/105 (22%), Positives = 53/105 (50%), Gaps = 12/105 (11%)

Query: 110 KQGYLEKKSKDHSFFGSEWQKRWCVVSRGLFYYYANEKSKQPKGTFLIKGYGVRMAP--- 166
           ++GYL K+S D++    +WQ +W  + + L +Y+ ++ S +P G +L++G     AP   
Sbjct: 25  RKGYLSKRSSDNT----KWQTKWFALLQNLLFYFESDSSSRPSGLYLLEGCVCDRAPSPK 80

Query: 167 ---HLRRDSKKESCF--ELTSQDRRSYEFTATSPAEARDWVDQIS 206
                +   +K+  F    + +++++ E       +  +WV  I+
Sbjct: 81  PALSAKEPLEKQHYFTVNFSHENQKALELRTEDAKDCDEWVAAIA 125


>gi|47717125 intersectin 1 isoform ITSN-s [Homo sapiens]
          Length = 1220

 Score = 46.6 bits (109), Expect = 3e-05
 Identities = 20/57 (35%), Positives = 33/57 (57%), Gaps = 2/57 (3%)

Query: 300  GLWDCHGDQPDELSFQRGDLIRILSKEYNMYGWWVGELNSLVGIVPKEYLTTAFEVE 356
            G++D      DEL+F +G +I +L+KE     WW GE+N  VG+ P  Y+    +++
Sbjct: 1162 GMYDYTAQNDDELAFNKGQIINVLNKEDP--DWWKGEVNGQVGLFPSNYVKLTTDMD 1216



 Score = 34.3 bits (77), Expect = 0.18
 Identities = 13/49 (26%), Positives = 26/49 (53%), Gaps = 3/49 (6%)

Query: 301  LWDCHGDQPDELSFQRGDLIRILSKEYNMYGWWVGELNSLVGIVPKEYL 349
            ++     +  +L+FQ+GD+I +  K+ +   WW G +    G+ P  Y+
Sbjct: 1010 MYTYESSEQGDLTFQQGDVILVTKKDGD---WWTGTVGDKAGVFPSNYV 1055



 Score = 32.7 bits (73), Expect = 0.51
 Identities = 15/51 (29%), Positives = 26/51 (50%), Gaps = 3/51 (5%)

Query: 299 QGLWDCHGDQPDELSFQRGDLIRILSKEYNMYGWWVGELNSLVGIVPKEYL 349
           Q L+     + + L+F + D+I +L ++     WW GE+    G  PK Y+
Sbjct: 919 QALYPWRAKKDNHLNFNKNDVITVLEQQDM---WWFGEVQGQKGWFPKSYV 966



 Score = 30.8 bits (68), Expect = 2.0
 Identities = 16/57 (28%), Positives = 25/57 (43%), Gaps = 5/57 (8%)

Query: 297 YYQGLWDCHGDQPDELSFQRGDLIRILSK-----EYNMYGWWVGELNSLVGIVPKEY 348
           YY+ L+       DE++ Q GD++ +  +     +    GW  GEL    G  P  Y
Sbjct: 744 YYRALYPFESRSHDEITIQPGDIVMVKGEWVDESQTGEPGWLGGELKGKTGWFPANY 800



 Score = 28.9 bits (63), Expect = 7.4
 Identities = 17/46 (36%), Positives = 23/46 (50%), Gaps = 7/46 (15%)

Query: 309  PDELSFQRGDLIRILSKEYNMYGWWVGELNS-----LVGIVPKEYL 349
            P++L+   G LI I  K  N  GWW GEL +      +G  P  Y+
Sbjct: 1090 PEQLTLAPGQLILIRKK--NPGGWWEGELQARGKKRQIGWFPANYV 1133


>gi|47717123 intersectin 1 isoform ITSN-l [Homo sapiens]
          Length = 1721

 Score = 46.6 bits (109), Expect = 3e-05
 Identities = 20/57 (35%), Positives = 33/57 (57%), Gaps = 2/57 (3%)

Query: 300  GLWDCHGDQPDELSFQRGDLIRILSKEYNMYGWWVGELNSLVGIVPKEYLTTAFEVE 356
            G++D      DEL+F +G +I +L+KE     WW GE+N  VG+ P  Y+    +++
Sbjct: 1162 GMYDYTAQNDDELAFNKGQIINVLNKEDP--DWWKGEVNGQVGLFPSNYVKLTTDMD 1216



 Score = 34.3 bits (77), Expect = 0.18
 Identities = 13/49 (26%), Positives = 26/49 (53%), Gaps = 3/49 (6%)

Query: 301  LWDCHGDQPDELSFQRGDLIRILSKEYNMYGWWVGELNSLVGIVPKEYL 349
            ++     +  +L+FQ+GD+I +  K+ +   WW G +    G+ P  Y+
Sbjct: 1010 MYTYESSEQGDLTFQQGDVILVTKKDGD---WWTGTVGDKAGVFPSNYV 1055



 Score = 32.7 bits (73), Expect = 0.51
 Identities = 15/51 (29%), Positives = 26/51 (50%), Gaps = 3/51 (5%)

Query: 299 QGLWDCHGDQPDELSFQRGDLIRILSKEYNMYGWWVGELNSLVGIVPKEYL 349
           Q L+     + + L+F + D+I +L ++     WW GE+    G  PK Y+
Sbjct: 919 QALYPWRAKKDNHLNFNKNDVITVLEQQDM---WWFGEVQGQKGWFPKSYV 966



 Score = 30.8 bits (68), Expect = 2.0
 Identities = 16/57 (28%), Positives = 25/57 (43%), Gaps = 5/57 (8%)

Query: 297 YYQGLWDCHGDQPDELSFQRGDLIRILSK-----EYNMYGWWVGELNSLVGIVPKEY 348
           YY+ L+       DE++ Q GD++ +  +     +    GW  GEL    G  P  Y
Sbjct: 744 YYRALYPFESRSHDEITIQPGDIVMVKGEWVDESQTGEPGWLGGELKGKTGWFPANY 800



 Score = 28.9 bits (63), Expect = 7.4
 Identities = 17/46 (36%), Positives = 23/46 (50%), Gaps = 7/46 (15%)

Query: 309  PDELSFQRGDLIRILSKEYNMYGWWVGELNS-----LVGIVPKEYL 349
            P++L+   G LI I  K  N  GWW GEL +      +G  P  Y+
Sbjct: 1090 PEQLTLAPGQLILIRKK--NPGGWWEGELQARGKKRQIGWFPANYV 1133


>gi|188219625 signal transducing adaptor molecule 2 [Homo sapiens]
          Length = 525

 Score = 45.8 bits (107), Expect = 6e-05
 Identities = 37/183 (20%), Positives = 79/183 (43%), Gaps = 29/183 (15%)

Query: 198 ARDWVDQISFLLKD---------LSSLTIPYEEDEEEEEKEETYDDI------DGFDSPS 242
           +RD+  ++  ++K+         L SL + + E+ +++ +             +G   P 
Sbjct: 86  SRDFATEVRAVIKNKAHPKVCEKLKSLMVEWSEEFQKDPQFSLISATIKSMKEEGITFPP 145

Query: 243 CGSQCRPTILPGSVGIKEPTEEKEEEDIYEVLPDEEHDLEEDESGTRR---------KGD 293
            GSQ   T+   +       + KE+EDI + +     + ++  + T+             
Sbjct: 146 AGSQ---TVSAAAKNGTSSNKNKEDEDIAKAIELSLQEQKQQHTETKSLYPSSEIQLNNK 202

Query: 294 YASYYQGLWDCHGDQPDELSFQRGDLIRILSKEYNMYGWWVGELNSLVGIVPKEYLTTAF 353
            A   + L+D    + +EL+F+ G++I +L    +   WW GE +  +G+ P  ++TT  
Sbjct: 203 VARKVRALYDFEAVEDNELTFKHGEIIIVLDD--SDANWWKGENHRGIGLFPSNFVTTNL 260

Query: 354 EVE 356
            +E
Sbjct: 261 NIE 263


  Database: hs.faa
    Posted date:  Aug 4, 2009  4:42 PM
  Number of letters in database: 18,247,518
  Number of sequences in database:  37,866
  
Lambda     K      H
   0.314    0.135    0.404 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 15,212,063
Number of Sequences: 37866
Number of extensions: 785871
Number of successful extensions: 7219
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 163
Number of HSP's successfully gapped in prelim test: 300
Number of HSP's that attempted gapping in prelim test: 4812
Number of HSP's gapped (non-prelim): 1467
length of query: 358
length of database: 18,247,518
effective HSP length: 103
effective length of query: 255
effective length of database: 14,347,320
effective search space: 3658566600
effective search space used: 3658566600
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 62 (28.5 bits)

Search results were obtained with NCBI BLAST and RefSeq entries.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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