Guide to the Human Genome
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Name: ZNF556 Sequence: fasta or formatted (456aa) NCBI GI: 13376460
Description:

zinc finger protein 556

Referenced in:

Kruppel-related Zinc Finger Proteins

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             5.0         23           2
 C cysteine            6.1         28           2
 D aspartate           1.8          8           1
 E glutamate           5.7         26           2
 F phenylalanine       3.5         16           1
 G glycine             8.1         37           2
 H histidine           6.1         28           1
 I isoleucine          1.5          7           1
 K lysine             13.2         60           3
 L leucine             4.8         22           2
 M methionine          1.3          6           2
 N asparagine          2.9         13           1
 P proline             3.9         18           1
 Q glutamine           3.7         17           2
 R arginine            7.5         34           2
 S serine             10.3         47           3
 T threonine           5.7         26           1
 V valine              4.8         22           3
 W tryptophan          1.3          6           1
 Y tyrosine            2.6         12           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   zinc finger protein 556 
ZNF555                0.422   zinc finger protein 555 
ZNF77                 0.409   zinc finger protein 77 
ZNF709                0.398   zinc finger protein 709 isoform a 
ZNF57                 0.397   zinc finger protein 57 
ZNF699                0.386   zinc finger protein 699 
ZNF791                0.371   zinc finger protein 791 
ZNF564                0.358   zinc finger protein 564 
ZNF14                 0.355   zinc finger protein 14 
ZNF709                0.353   zinc finger protein 709 isoform b 
ZNF135                0.343   zinc finger protein 135 
ZNF283                0.342   zinc finger protein 283 
ZNF433                0.338   zinc finger protein 433 
ZNF420                0.336   zinc finger protein 420 
ZNF184                0.335   zinc finger protein 184 
ZNF490                0.334   zinc finger protein 490 
ZNF56                 0.333   PREDICTED: zinc finger protein 56 
ZNF56                 0.332   PREDICTED: zinc finger protein 56 
ZNF56                 0.332   PREDICTED: zinc finger protein 56 
ZNF737                0.330   zinc finger protein 737 
ZNF737                0.330   PREDICTED: zinc finger protein 737 
ZNF737                0.330   PREDICTED: zinc finger protein 737 
ZNF737                0.330   PREDICTED: zinc finger protein 737 
ZNF167                0.330   zinc finger protein 167 isoform 1 
ZNF595                0.329   zinc finger protein 595 
LOC100292533          0.325   PREDICTED: similar to zinc finger protein 564 [Homo...
ZNF726                0.324   PREDICTED: zinc finger protein 726 
ZNF726                0.324   PREDICTED: zinc finger protein 726 
ZNF726                0.324   PREDICTED: zinc finger protein 726 
LOC100290363          0.322   PREDICTED: hypothetical protein XP_002347962 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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