Guide to the Human Genome
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Name: LOC400696 Sequence: fasta or formatted (151aa) NCBI GI: 223633967
Description:

hypothetical protein LOC400696

Not currently referenced in the text

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             3.3          5           1
 C cysteine            2.6          4           1
 D aspartate           4.0          6           1
 E glutamate           4.6          7           1
 F phenylalanine       7.3         11           1
 G glycine             3.3          5           1
 H histidine           5.3          8           1
 I isoleucine          6.0          9           2
 K lysine              2.6          4           1
 L leucine             7.9         12           1
 M methionine          3.3          5           1
 N asparagine          3.3          5           1
 P proline             8.6         13           3
 Q glutamine           4.0          6           1
 R arginine            4.0          6           2
 S serine             10.6         16           3
 T threonine           5.3          8           1
 V valine              7.9         12           2
 W tryptophan          3.3          5           1
 Y tyrosine            2.6          4           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   hypothetical protein LOC400696 
LGALS14               0.383   lectin, galactoside-binding, soluble, 14 isoform 1 [H...
LGALS14               0.363   lectin, galactoside-binding, soluble, 14 isoform 2 [...
LGALS13               0.350   galectin-13 
CLC                   0.340   Charcot-Leyden crystal protein 
LOC148003             0.317   PREDICTED: similar to lectin, galactoside-binding, s...
LOC148003             0.317   PREDICTED: similar to lectin, galactoside-binding, ...
LOC148003             0.317   PREDICTED: similar to lectin, galactoside-binding, s...
LOC148003             0.310   PREDICTED: similar to lectin, galactoside-binding, ...
LOC148003             0.307   PREDICTED: similar to lectin, galactoside-binding, ...
LOC148003             0.307   PREDICTED: similar to lectin, galactoside-binding, ...
LGALS9                0.097   galectin-9 isoform short 
LGALS9                0.097   galectin-9 isoform long 
LGALS9C               0.090   galectin 9 like 
LGALS9B               0.090   galectin-9 like 
LGALS8                0.080   galectin-8 isoform a 
LGALS8                0.080   galectin-8 isoform b 
LGALS8                0.080   galectin-8 isoform b 
LGALS8                0.080   galectin-8 isoform a 
LGALS4                0.080   galectin-4 
LGALS3                0.047   galectin 3 
LGALS7                0.040   galectin-7 
LGALS7B               0.040   galectin-7B 
LGALS1                0.020   galectin-1 
HDAC8                 0.013   histone deacetylase 8 
UBE2Q2                0.013   ubiquitin-conjugating enzyme E2Q 2 isoform 1 
DNHD1                 0.010   dynein heavy chain domain 1 isoform 1 
SYDE2                 0.010   synapse defective 1, Rho GTPase, homolog 2 
SF3B3                 0.007   splicing factor 3b, subunit 3 
VPS13D                0.007   vacuolar protein sorting 13D isoform 2 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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