Guide to the Human Genome
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Name: LGALS1 Sequence: fasta or formatted (135aa) NCBI GI: 4504981
Description:

galectin-1

Referenced in:

Lectin Families
Capping and Splicing

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine            10.4         14           2
 C cysteine            4.4          6           1
 D aspartate           6.7          9           1
 E glutamate           5.2          7           1
 F phenylalanine       7.4         10           1
 G glycine             8.1         11           2
 H histidine           1.5          2           1
 I isoleucine          3.0          4           1
 K lysine              5.9          8           1
 L leucine             8.9         12           1
 M methionine          1.5          2           1
 N asparagine          9.6         13           2
 P proline             5.2          7           1
 Q glutamine           2.2          3           1
 R arginine            3.7          5           1
 S serine              3.7          5           1
 T threonine           3.0          4           1
 V valine              7.4         10           1
 W tryptophan          0.7          1           1
 Y tyrosine            1.5          2           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   galectin-1 
LGALS2                0.355   lectin, galactoside-binding, soluble, 2 
LGALS7                0.185   galectin-7 
LGALS7B               0.185   galectin-7B 
LGALS3                0.162   galectin 3 
LGALS4                0.143   galectin-4 
LGALS9                0.143   galectin-9 isoform short 
LGALS9                0.143   galectin-9 isoform long 
LGALS9C               0.135   galectin 9 like 
LGALS9B               0.135   galectin-9 like 
LGALS8                0.124   galectin-8 isoform a 
LGALS8                0.124   galectin-8 isoform b 
LGALS8                0.124   galectin-8 isoform b 
LGALS8                0.124   galectin-8 isoform a 
LGALS12               0.089   lectin, galactoside-binding, soluble, 12 isoform 3 ...
LGALS12               0.089   lectin, galactoside-binding, soluble, 12 isoform 2 [...
LGALS12               0.081   lectin, galactoside-binding, soluble, 12 isoform 5 ...
LGALS12               0.081   lectin, galactoside-binding, soluble, 12 isoform 4 ...
LGALS12               0.081   lectin, galactoside-binding, soluble, 12 isoform 1 ...
CLC                   0.039   Charcot-Leyden crystal protein 
LGALS13               0.031   galectin-13 
LOC400696             0.023   hypothetical protein LOC400696 
LOC148003             0.019   PREDICTED: similar to lectin, galactoside-binding, ...
LOC148003             0.019   PREDICTED: similar to lectin, galactoside-binding, ...
LOC148003             0.019   PREDICTED: similar to lectin, galactoside-binding, s...
LOC148003             0.019   PREDICTED: similar to lectin, galactoside-binding, ...
LOC148003             0.015   PREDICTED: similar to lectin, galactoside-binding, s...
LOC148003             0.015   PREDICTED: similar to lectin, galactoside-binding, ...
TRAPPC9               0.008   trafficking protein particle complex 9 isoform b [H...
TRAPPC9               0.008   trafficking protein particle complex 9 isoform a [H...
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
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