Guide to the Human Genome
Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help
Name: LOC148003 Sequence: fasta or formatted (142aa) NCBI GI: 169213906
Description:

PREDICTED: similar to lectin, galactoside-binding, soluble, 14 isoform 2

Referenced in:

Lectin Families

Other entries for this name:
alt prot [172aa] PREDICTED: similar to lectin, galactoside-binding, soluble, 14
alt prot [172aa] PREDICTED: similar to lectin, galactoside-binding, soluble, 14 is...
alt prot [172aa] PREDICTED: similar to lectin, galactoside-binding, soluble, 14
alt prot [142aa] PREDICTED: similar to lectin, galactoside-binding, soluble, 14 is...
alt mRNA [142aa] PREDICTED: similar to lectin, galactoside-binding, soluble, 14 is...
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             1.4          2           1
 C cysteine            1.4          2           1
 D aspartate           4.9          7           1
 E glutamate           7.7         11           2
 F phenylalanine       4.9          7           1
 G glycine             4.9          7           1
 H histidine           3.5          5           1
 I isoleucine          7.0         10           2
 K lysine              3.5          5           1
 L leucine             8.5         12           1
 M methionine          3.5          5           1
 N asparagine          5.6          8           2
 P proline             4.9          7           2
 Q glutamine           2.1          3           1
 R arginine            6.3          9           2
 S serine              7.7         11           2
 T threonine           2.1          3           1
 V valine             12.7         18           2
 W tryptophan          1.4          2           1
 Y tyrosine            5.6          8           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: similar to lectin, galactoside-binding, ... 
LOC148003             1.000   PREDICTED: similar to lectin, galactoside-binding, s...
LOC148003             0.985   PREDICTED: similar to lectin, galactoside-binding, s...
LOC148003             0.970   PREDICTED: similar to lectin, galactoside-binding, ...
LOC148003             0.970   PREDICTED: similar to lectin, galactoside-binding, ...
LOC148003             0.951   PREDICTED: similar to lectin, galactoside-binding, ...
LGALS13               0.690   galectin-13 
LGALS14               0.567   lectin, galactoside-binding, soluble, 14 isoform 1 [H...
LGALS14               0.556   lectin, galactoside-binding, soluble, 14 isoform 2 [...
CLC                   0.455   Charcot-Leyden crystal protein 
LOC400696             0.354   hypothetical protein LOC400696 
LGALS4                0.164   galectin-4 
LGALS9B               0.157   galectin-9 like 
LGALS9                0.153   galectin-9 isoform long 
LGALS9C               0.153   galectin 9 like 
LGALS7                0.149   galectin-7 
LGALS7B               0.149   galectin-7B 
LGALS9                0.146   galectin-9 isoform short 
LGALS8                0.116   galectin-8 isoform a 
LGALS8                0.116   galectin-8 isoform b 
LGALS8                0.116   galectin-8 isoform b 
LGALS8                0.116   galectin-8 isoform a 
LGALS3                0.097   galectin 3 
LGALS12               0.090   lectin, galactoside-binding, soluble, 12 isoform 3 ...
LGALS12               0.090   lectin, galactoside-binding, soluble, 12 isoform 2 [...
LGALS12               0.082   lectin, galactoside-binding, soluble, 12 isoform 1 ...
LGALS12               0.071   lectin, galactoside-binding, soluble, 12 isoform 5 ...
LGALS12               0.071   lectin, galactoside-binding, soluble, 12 isoform 4 ...
HSPC159               0.034   hypothetical protein LOC29094 
LGALS1                0.019   galectin-1 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help

Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

CSHL Press