Guide to the Human Genome
Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help
Name: LOC148003 Sequence: fasta or formatted (172aa) NCBI GI: 169213288
Description:

PREDICTED: similar to lectin, galactoside-binding, soluble, 14

Referenced in:

Lectin Families

Other entries for this name:
alt prot [142aa] PREDICTED: similar to lectin, galactoside-binding, soluble, 14 is...
alt prot [172aa] PREDICTED: similar to lectin, galactoside-binding, soluble, 14 is...
alt prot [172aa] PREDICTED: similar to lectin, galactoside-binding, soluble, 14
alt prot [142aa] PREDICTED: similar to lectin, galactoside-binding, soluble, 14 is...
alt prot [142aa] PREDICTED: similar to lectin, galactoside-binding, soluble, 14 is...
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             1.7          3           1
 C cysteine            2.9          5           1
 D aspartate           4.1          7           1
 E glutamate           7.0         12           2
 F phenylalanine       4.1          7           1
 G glycine             5.2          9           1
 H histidine           4.1          7           1
 I isoleucine          6.4         11           2
 K lysine              3.5          6           1
 L leucine            10.5         18           1
 M methionine          3.5          6           1
 N asparagine          5.2          9           2
 P proline             5.2          9           2
 Q glutamine           1.7          3           1
 R arginine            7.0         12           2
 S serine              7.0         12           2
 T threonine           1.7          3           1
 V valine             12.2         21           2
 W tryptophan          1.7          3           1
 Y tyrosine            5.2          9           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: similar to lectin, galactoside-binding, ... 
LOC148003             0.994   PREDICTED: similar to lectin, galactoside-binding, ...
LOC148003             0.994   PREDICTED: similar to lectin, galactoside-binding, ...
LOC148003             0.772   PREDICTED: similar to lectin, galactoside-binding, s...
LOC148003             0.763   PREDICTED: similar to lectin, galactoside-binding, ...
LOC148003             0.763   PREDICTED: similar to lectin, galactoside-binding, s...
LGALS14               0.626   lectin, galactoside-binding, soluble, 14 isoform 2 [...
LGALS13               0.539   galectin-13 
LGALS14               0.431   lectin, galactoside-binding, soluble, 14 isoform 1 [H...
CLC                   0.353   Charcot-Leyden crystal protein 
LOC400696             0.278   hypothetical protein LOC400696 
LGALS9B               0.129   galectin-9 like 
LGALS4                0.126   galectin-4 
LGALS9                0.126   galectin-9 isoform long 
LGALS9C               0.126   galectin 9 like 
LGALS9                0.120   galectin-9 isoform short 
LGALS7                0.117   galectin-7 
LGALS7B               0.117   galectin-7B 
LGALS8                0.093   galectin-8 isoform a 
LGALS8                0.093   galectin-8 isoform b 
LGALS8                0.093   galectin-8 isoform b 
LGALS8                0.093   galectin-8 isoform a 
LGALS3                0.075   galectin 3 
LGALS12               0.066   lectin, galactoside-binding, soluble, 12 isoform 3 ...
LGALS12               0.066   lectin, galactoside-binding, soluble, 12 isoform 2 [...
LGALS12               0.063   lectin, galactoside-binding, soluble, 12 isoform 1 ...
LGALS12               0.051   lectin, galactoside-binding, soluble, 12 isoform 5 ...
LGALS12               0.051   lectin, galactoside-binding, soluble, 12 isoform 4 ...
HSPC159               0.015   hypothetical protein LOC29094 
LGALS1                0.012   galectin-1 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help

Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

CSHL Press