Guide to the Human Genome
Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help
Name: LGALS4 Sequence: fasta or formatted (323aa) NCBI GI: 5453712
Description:

galectin-4

Referenced in:

Lectin Families

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             4.0         13           2
 C cysteine            0.6          2           1
 D aspartate           3.7         12           1
 E glutamate           3.1         10           2
 F phenylalanine       7.1         23           2
 G glycine            11.5         37           2
 H histidine           3.4         11           1
 I isoleucine          4.6         15           3
 K lysine              4.0         13           2
 L leucine             7.4         24           2
 M methionine          2.8          9           2
 N asparagine          5.3         17           1
 P proline             9.6         31           2
 Q glutamine           5.9         19           2
 R arginine            4.6         15           2
 S serine              5.0         16           2
 T threonine           4.0         13           1
 V valine              8.0         26           3
 W tryptophan          0.9          3           1
 Y tyrosine            4.3         14           2
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   galectin-4 
LGALS9                0.292   galectin-9 isoform short 
LGALS9B               0.289   galectin-9 like 
LGALS9C               0.288   galectin 9 like 
LGALS9                0.286   galectin-9 isoform long 
LGALS8                0.272   galectin-8 isoform b 
LGALS8                0.272   galectin-8 isoform b 
LGALS8                0.269   galectin-8 isoform a 
LGALS8                0.269   galectin-8 isoform a 
LGALS12               0.152   lectin, galactoside-binding, soluble, 12 isoform 2 [...
LGALS12               0.149   lectin, galactoside-binding, soluble, 12 isoform 3 ...
LGALS12               0.148   lectin, galactoside-binding, soluble, 12 isoform 1 ...
LGALS7                0.126   galectin-7 
LGALS7B               0.126   galectin-7B 
LGALS12               0.123   lectin, galactoside-binding, soluble, 12 isoform 4 ...
LGALS12               0.119   lectin, galactoside-binding, soluble, 12 isoform 5 ...
LGALS3                0.100   galectin 3 
HSPC159               0.100   hypothetical protein LOC29094 
LGALS14               0.075   lectin, galactoside-binding, soluble, 14 isoform 1 [H...
LGALS14               0.073   lectin, galactoside-binding, soluble, 14 isoform 2 [...
LGALS13               0.072   galectin-13 
LOC148003             0.067   PREDICTED: similar to lectin, galactoside-binding, s...
LOC148003             0.067   PREDICTED: similar to lectin, galactoside-binding, ...
LOC148003             0.067   PREDICTED: similar to lectin, galactoside-binding, s...
LOC148003             0.064   PREDICTED: similar to lectin, galactoside-binding, ...
LOC148003             0.064   PREDICTED: similar to lectin, galactoside-binding, ...
LOC148003             0.064   PREDICTED: similar to lectin, galactoside-binding, ...
CLC                   0.062   Charcot-Leyden crystal protein 
LGALS1                0.056   galectin-1 
LGALS2                0.044   lectin, galactoside-binding, soluble, 2 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help

Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

CSHL Press