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Search of human proteins with 223633947
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|223633947 zinc finger, CCHC domain containing 24 [Homo
sapiens]
(241 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|223633947 zinc finger, CCHC domain containing 24 [Homo sapiens] 515 e-146
gi|33620716 retinoblastoma-binding protein 6 isoform 2 [Homo sap... 41 8e-04
gi|33620769 retinoblastoma-binding protein 6 isoform 1 [Homo sap... 41 8e-04
gi|211971095 zygote arrest 1-like [Homo sapiens] 38 0.007
gi|28269687 zygote arrest 1 [Homo sapiens] 37 0.020
gi|122937247 unc-13 homolog A [Homo sapiens] 35 0.058
gi|209954811 zinc finger protein 507 [Homo sapiens] 33 0.17
gi|55925468 zinc finger protein 507 [Homo sapiens] 33 0.17
gi|149588643 zinc finger protein 283 [Homo sapiens] 33 0.17
gi|72534660 splicing factor, arginine/serine-rich 7 [Homo sapiens] 33 0.29
gi|18860916 5'-3' exoribonuclease 2 [Homo sapiens] 32 0.64
gi|58331272 zinc finger, CCHC domain containing 6 [Homo sapiens] 31 0.84
gi|110815844 zinc finger, CCHC domain containing 7 [Homo sapiens] 31 1.1
gi|42558260 zinc finger, CCHC domain containing 13 [Homo sapiens] 31 1.1
gi|57863248 zinc finger, CCHC domain containing 11 isoform a [Ho... 30 1.4
gi|57863246 zinc finger, CCHC domain containing 11 isoform b [Ho... 30 1.4
gi|57863250 zinc finger, CCHC domain containing 11 isoform c [Ho... 30 1.4
gi|13375938 lin-28 homolog [Homo sapiens] 30 1.9
gi|24308171 zinc finger protein 280C [Homo sapiens] 30 2.5
gi|37574608 zinc finger protein 189 isoform 2 [Homo sapiens] 30 2.5
gi|37693525 zinc finger protein 189 isoform 1 [Homo sapiens] 30 2.5
gi|239741632 PREDICTED: hypothetical protein XP_002342252 [Homo ... 29 3.2
gi|124286830 zinc finger protein 618 [Homo sapiens] 29 3.2
gi|54607029 28kD interferon responsive protein [Homo sapiens] 29 3.2
gi|38044290 zinc finger, CCHC domain containing 8 [Homo sapiens] 29 3.2
gi|24308069 zinc finger protein 521 [Homo sapiens] 29 4.2
gi|125346192 zinc finger protein 790 [Homo sapiens] 29 4.2
gi|58331199 ring finger and CHY zinc finger domain containing 1 ... 28 5.5
gi|58331197 ring finger and CHY zinc finger domain containing 1 ... 28 5.5
gi|58331195 ring finger and CHY zinc finger domain containing 1 ... 28 5.5
>gi|223633947 zinc finger, CCHC domain containing 24 [Homo sapiens]
Length = 241
Score = 515 bits (1326), Expect = e-146
Identities = 241/241 (100%), Positives = 241/241 (100%)
Query: 1 MSLLSAIDTSAASVYQPAQLLNWVYLSLQDTHQASAFDAFRPEPTAGAAPPELAFGKGRP 60
MSLLSAIDTSAASVYQPAQLLNWVYLSLQDTHQASAFDAFRPEPTAGAAPPELAFGKGRP
Sbjct: 1 MSLLSAIDTSAASVYQPAQLLNWVYLSLQDTHQASAFDAFRPEPTAGAAPPELAFGKGRP 60
Query: 61 EQLGSPLHSSYLNSFFQLQRGEALSNSVYKGASPYGSLNNIADGLSSLTEHFSDLTLTSE 120
EQLGSPLHSSYLNSFFQLQRGEALSNSVYKGASPYGSLNNIADGLSSLTEHFSDLTLTSE
Sbjct: 61 EQLGSPLHSSYLNSFFQLQRGEALSNSVYKGASPYGSLNNIADGLSSLTEHFSDLTLTSE 120
Query: 121 ARKPSKRPPPNYLCHLCFNKGHYIKDCPQARPKGEGLTPYQGKKRCFGEYKCPKCKRKWM 180
ARKPSKRPPPNYLCHLCFNKGHYIKDCPQARPKGEGLTPYQGKKRCFGEYKCPKCKRKWM
Sbjct: 121 ARKPSKRPPPNYLCHLCFNKGHYIKDCPQARPKGEGLTPYQGKKRCFGEYKCPKCKRKWM 180
Query: 181 SGNSWANMGQECIKCHINVYPHKQRPLEKPDGLDVSDQSKEHPQHLCEKCKVLGYYCRRV 240
SGNSWANMGQECIKCHINVYPHKQRPLEKPDGLDVSDQSKEHPQHLCEKCKVLGYYCRRV
Sbjct: 181 SGNSWANMGQECIKCHINVYPHKQRPLEKPDGLDVSDQSKEHPQHLCEKCKVLGYYCRRV 240
Query: 241 Q 241
Q
Sbjct: 241 Q 241
>gi|33620716 retinoblastoma-binding protein 6 isoform 2 [Homo
sapiens]
Length = 1758
Score = 41.2 bits (95), Expect = 8e-04
Identities = 36/116 (31%), Positives = 46/116 (39%), Gaps = 7/116 (6%)
Query: 122 RKPSKRPPPNYLCHLCFNKGHYIKDCPQARPKGEGLTPYQGKKRCFGEYKCPKCKRKWMS 181
+KP PPP+Y C C GHYIK+CP K P K + K M
Sbjct: 149 KKPLGPPPPSYTCFRCGKPGHYIKNCPTNGDKNFESGPRIKKSTGIPRSFMMEVKDPNMK 208
Query: 182 GNSWANMGQECIKCHINVYPHKQRPLEKPDGL--DVSDQSKEH----PQHLCEKCK 231
G N G+ I I+ + EKP L + S S+E + LC CK
Sbjct: 209 GAMLTNTGKYAIPT-IDAEAYAIGKKEKPPFLPEEPSSSSEEDDPIPDELLCLICK 263
>gi|33620769 retinoblastoma-binding protein 6 isoform 1 [Homo
sapiens]
Length = 1792
Score = 41.2 bits (95), Expect = 8e-04
Identities = 36/116 (31%), Positives = 46/116 (39%), Gaps = 7/116 (6%)
Query: 122 RKPSKRPPPNYLCHLCFNKGHYIKDCPQARPKGEGLTPYQGKKRCFGEYKCPKCKRKWMS 181
+KP PPP+Y C C GHYIK+CP K P K + K M
Sbjct: 149 KKPLGPPPPSYTCFRCGKPGHYIKNCPTNGDKNFESGPRIKKSTGIPRSFMMEVKDPNMK 208
Query: 182 GNSWANMGQECIKCHINVYPHKQRPLEKPDGL--DVSDQSKEH----PQHLCEKCK 231
G N G+ I I+ + EKP L + S S+E + LC CK
Sbjct: 209 GAMLTNTGKYAIPT-IDAEAYAIGKKEKPPFLPEEPSSSSEEDDPIPDELLCLICK 263
>gi|211971095 zygote arrest 1-like [Homo sapiens]
Length = 321
Score = 38.1 bits (87), Expect = 0.007
Identities = 27/110 (24%), Positives = 40/110 (36%), Gaps = 23/110 (20%)
Query: 148 PQARPKGEGLTPYQGKKRCFGEYKCPKCKRKWMSGNSWANMG-------QECIKCHINVY 200
P RP + L P +G + C CK +W S W G Q C KC +
Sbjct: 211 PLRRPNFQFLEPK------YGYFHCKDCKTRWESAYVWCISGTNKVYFKQLCCKCQKSFN 264
Query: 201 PHKQRPLE----------KPDGLDVSDQSKEHPQHLCEKCKVLGYYCRRV 240
P++ ++ P D + H Q LC +CK + C +
Sbjct: 265 PYRVEAIQCQTCSKSHCSCPQKKRHIDLRRPHRQELCGRCKDKRFSCGNI 314
>gi|28269687 zygote arrest 1 [Homo sapiens]
Length = 424
Score = 36.6 bits (83), Expect = 0.020
Identities = 26/101 (25%), Positives = 38/101 (37%), Gaps = 17/101 (16%)
Query: 148 PQARPKGEGLTPYQGKKRCFGEYKCPKCKRKWMSGNSWANMG-------QECIKCHINVY 200
P++ G+ +Q ++ +G Y C C +W S W G Q C C +
Sbjct: 308 PRSPELGKERLRFQFLEQKYGYYHCKDCNIRWESAYVWCVQGTNKVYFKQFCRTCQKSYN 367
Query: 201 PH----------KQRPLEKPDGLDVSDQSKEHPQHLCEKCK 231
P+ KQ P L D + H Q LC +CK
Sbjct: 368 PYRVEDITCQSCKQTRCSCPVKLRHVDPKRPHRQDLCGRCK 408
>gi|122937247 unc-13 homolog A [Homo sapiens]
Length = 1791
Score = 35.0 bits (79), Expect = 0.058
Identities = 38/149 (25%), Positives = 58/149 (38%), Gaps = 23/149 (15%)
Query: 19 QLLNWVYLSLQDTHQASAFDA-------FRPEPTAGAAPPELAFGKG---------RPEQ 62
Q NW Y + H A +R E + PP + RP
Sbjct: 261 QCCNWNYFGWGEQHNDDPDSAVDDRDSDYRSETSNSIPPPYYTTSQPNASVHQYSVRPPP 320
Query: 63 LGS-PLHSSYLNSFFQLQRGEALSNSVYKGASPYGSLNNIADGLSSLTEHFS-DLTLTSE 120
LGS +S ++S+ + +ALS + G+S Y S ++ G S L+E F D
Sbjct: 321 LGSRESYSDSMHSYEEFSEPQALSPT---GSSRYASSGELSQGSSQLSEDFDPDEHSLQG 377
Query: 121 ARKPSKRPPPNYLCHLCFNKGHYIKDCPQ 149
+ +R +Y H C + Y KD P+
Sbjct: 378 SDMEDERDRDSY--HSCHSSVSYHKDSPR 404
>gi|209954811 zinc finger protein 507 [Homo sapiens]
Length = 953
Score = 33.5 bits (75), Expect = 0.17
Identities = 21/72 (29%), Positives = 35/72 (48%), Gaps = 9/72 (12%)
Query: 170 YKCPKCKRKWMSGNSWANMGQECIKCHINVYPHKQRPLEKPDGLDVSDQSKEHPQHLCEK 229
Y+C C + SGN + IK H+ V+ +Q P + P ++D SK+ H+
Sbjct: 641 YRCRLCH--YTSGN------KGYIKQHLRVHRQRQ-PYQCPICEHIADNSKDLESHMIHH 691
Query: 230 CKVLGYYCRRVQ 241
CK Y C++ +
Sbjct: 692 CKTRIYQCKQCE 703
>gi|55925468 zinc finger protein 507 [Homo sapiens]
Length = 953
Score = 33.5 bits (75), Expect = 0.17
Identities = 21/72 (29%), Positives = 35/72 (48%), Gaps = 9/72 (12%)
Query: 170 YKCPKCKRKWMSGNSWANMGQECIKCHINVYPHKQRPLEKPDGLDVSDQSKEHPQHLCEK 229
Y+C C + SGN + IK H+ V+ +Q P + P ++D SK+ H+
Sbjct: 641 YRCRLCH--YTSGN------KGYIKQHLRVHRQRQ-PYQCPICEHIADNSKDLESHMIHH 691
Query: 230 CKVLGYYCRRVQ 241
CK Y C++ +
Sbjct: 692 CKTRIYQCKQCE 703
>gi|149588643 zinc finger protein 283 [Homo sapiens]
Length = 679
Score = 33.5 bits (75), Expect = 0.17
Identities = 27/97 (27%), Positives = 42/97 (43%), Gaps = 6/97 (6%)
Query: 140 KGHYIKDCPQARPKGEGLTPYQGKKRCFGEYKCPKCKRKWMSGNSWANMGQECIKCHINV 199
K + K+C +A +G LT +Q YKC +C + + G+S A E I H
Sbjct: 289 KPYECKECGKAFSRGYHLTQHQKIHTGVKSYKCKECGKAFFWGSSLAK--HEII--HTGE 344
Query: 200 YPHKQRPLEK--PDGLDVSDQSKEHPQHLCEKCKVLG 234
P+K + K G ++ K H +CK+ G
Sbjct: 345 KPYKCKECGKAFSRGYQLTQHQKIHTGKKPYECKICG 381
Score = 27.7 bits (60), Expect = 9.3
Identities = 18/85 (21%), Positives = 36/85 (42%), Gaps = 3/85 (3%)
Query: 100 NIADGLSSLTEHFSDLTLTSEARKPSKRPPPNYLCHLCFN---KGHYIKDCPQARPKGEG 156
+I +GL E + + S + PS R + H + K + K+C +A G
Sbjct: 162 SIFEGLKGHQEGYFSQMIISYEKIPSYRKSKSLTPHQRIHNTEKSYVCKECGKACSHGSK 221
Query: 157 LTPYQGKKRCFGEYKCPKCKRKWMS 181
L ++ ++C +C + ++S
Sbjct: 222 LVQHERTHTAEKHFECKECGKNYLS 246
>gi|72534660 splicing factor, arginine/serine-rich 7 [Homo sapiens]
Length = 238
Score = 32.7 bits (73), Expect = 0.29
Identities = 14/27 (51%), Positives = 17/27 (62%), Gaps = 1/27 (3%)
Query: 122 RKPSKRP-PPNYLCHLCFNKGHYIKDC 147
R P++RP PN C+ C KGHY DC
Sbjct: 93 RPPARRPFDPNDRCYECGEKGHYAYDC 119
>gi|18860916 5'-3' exoribonuclease 2 [Homo sapiens]
Length = 950
Score = 31.6 bits (70), Expect = 0.64
Identities = 16/40 (40%), Positives = 20/40 (50%), Gaps = 4/40 (10%)
Query: 108 LTEHFSDLTLTSEARKPSKRPPPNYLCHLCFNKGHYIKDC 147
L H + T+ E KP+K P C LC GH +KDC
Sbjct: 241 LATHEPNFTIIREEFKPNKPKP----CGLCNQFGHEVKDC 276
>gi|58331272 zinc finger, CCHC domain containing 6 [Homo sapiens]
Length = 1495
Score = 31.2 bits (69), Expect = 0.84
Identities = 18/53 (33%), Positives = 25/53 (47%), Gaps = 2/53 (3%)
Query: 125 SKRPPPNYLCHLCFNKGHYIKDCPQ--ARPKGEGLTPYQGKKRCFGEYKCPKC 175
+K P +C LC +GH KDCP+ R + E L P K + C +C
Sbjct: 956 TKGKSPTVVCSLCKREGHLKKDCPEDFKRIQLEPLPPLTPKFLNILDQVCIQC 1008
Score = 31.2 bits (69), Expect = 0.84
Identities = 15/45 (33%), Positives = 23/45 (51%), Gaps = 4/45 (8%)
Query: 107 SLTEHFSDLTLTSEARKPSKRPPPNYLCHLCFNKGHYIKDCPQAR 151
S E+F D + +E + P + C +C GH++KDCP R
Sbjct: 1324 SKMEYFFDPDVLTEG----ELAPNDRCCRICGKIGHFMKDCPMRR 1364
>gi|110815844 zinc finger, CCHC domain containing 7 [Homo sapiens]
Length = 543
Score = 30.8 bits (68), Expect = 1.1
Identities = 15/54 (27%), Positives = 24/54 (44%), Gaps = 2/54 (3%)
Query: 98 LNNIADGLSSLTEHFSDLTLTSEARKPSKRPPPNYL--CHLCFNKGHYIKDCPQ 149
L + D + + + T +KP P+ L C+ C KGHY +CP+
Sbjct: 312 LGHYTDACTEIWRQYHLTTKPGPPKKPKTPSRPSALAYCYHCAQKGHYGHECPE 365
Score = 29.3 bits (64), Expect = 3.2
Identities = 34/152 (22%), Positives = 53/152 (34%), Gaps = 43/152 (28%)
Query: 96 GSLNNIADGLSSLTEHFSDLTLTSEARKPSKRPP-----------PNYLCHLCFNKGHYI 144
G N++ +G + SD + EA+ + R P N +C C +GH
Sbjct: 196 GCENSVTEGEDGINWSISDKDI--EAQIANNRTPGRWTQRYYSANKNIICRNCDKRGHLS 253
Query: 145 KDCPQARPKGEGLTPYQGKKRCFGEYKCPKCKRKWMSGNSWANMGQECIKCHINVYPHKQ 204
K+CP R +RCF C R+ G C + +
Sbjct: 254 KNCPLPRK----------VRRCF------LCSRR----------GHLLYSCPAPLCEY-- 285
Query: 205 RPLEKPDGLDVSDQSKEHPQHLCEKCKVLGYY 236
P LD S + C++C +LG+Y
Sbjct: 286 --CPVPKMLDHSCLFRHSWDKQCDRCHMLGHY 315
>gi|42558260 zinc finger, CCHC domain containing 13 [Homo sapiens]
Length = 166
Score = 30.8 bits (68), Expect = 1.1
Identities = 24/105 (22%), Positives = 37/105 (35%), Gaps = 14/105 (13%)
Query: 137 CFNKGHYIKDCPQARPKGEGLTPYQGKKRCFG---EYKCPKCKRKWMSGNSWANMGQECI 193
C + GH+ + CP+ G + +C Y C C + + +G C
Sbjct: 9 CGHSGHWARGCPRGGAGGRRGGGHGRGSQCGSTTLSYTCYCCGESGRNAKNCVLLGNICY 68
Query: 194 KCHINVYPHKQRPLEKPDGLDVSDQSKEHPQHLCEKCKVLGYYCR 238
C + + K D D +E QH C C LG+ R
Sbjct: 69 NCGRSGHIAK----------DCKDPKRERRQH-CYTCGRLGHLAR 102
>gi|57863248 zinc finger, CCHC domain containing 11 isoform a [Homo
sapiens]
Length = 1645
Score = 30.4 bits (67), Expect = 1.4
Identities = 10/23 (43%), Positives = 15/23 (65%)
Query: 129 PPNYLCHLCFNKGHYIKDCPQAR 151
P + C +C GHY+KDCP+ +
Sbjct: 1290 PNDRCCRVCGKIGHYMKDCPKRK 1312
Score = 29.6 bits (65), Expect = 2.5
Identities = 18/56 (32%), Positives = 23/56 (41%), Gaps = 11/56 (19%)
Query: 129 PPNYLCHLCFNKGHYIKDCPQARPKGE--GLTPYQGK---------KRCFGEYKCP 173
PP +C +C GH DCP+ K + L P + KRCF E P
Sbjct: 910 PPTIVCSICKKDGHSKNDCPEDFRKIDLKPLPPMTNRFREILDLVCKRCFDELSPP 965
>gi|57863246 zinc finger, CCHC domain containing 11 isoform b [Homo
sapiens]
Length = 1644
Score = 30.4 bits (67), Expect = 1.4
Identities = 10/23 (43%), Positives = 15/23 (65%)
Query: 129 PPNYLCHLCFNKGHYIKDCPQAR 151
P + C +C GHY+KDCP+ +
Sbjct: 1290 PNDRCCRVCGKIGHYMKDCPKRK 1312
Score = 29.6 bits (65), Expect = 2.5
Identities = 18/56 (32%), Positives = 23/56 (41%), Gaps = 11/56 (19%)
Query: 129 PPNYLCHLCFNKGHYIKDCPQARPKGE--GLTPYQGK---------KRCFGEYKCP 173
PP +C +C GH DCP+ K + L P + KRCF E P
Sbjct: 910 PPTIVCSICKKDGHSKNDCPEDFRKIDLKPLPPMTNRFREILDLVCKRCFDELSPP 965
>gi|57863250 zinc finger, CCHC domain containing 11 isoform c [Homo
sapiens]
Length = 1640
Score = 30.4 bits (67), Expect = 1.4
Identities = 10/23 (43%), Positives = 15/23 (65%)
Query: 129 PPNYLCHLCFNKGHYIKDCPQAR 151
P + C +C GHY+KDCP+ +
Sbjct: 1290 PNDRCCRVCGKIGHYMKDCPKRK 1312
Score = 29.6 bits (65), Expect = 2.5
Identities = 18/56 (32%), Positives = 23/56 (41%), Gaps = 11/56 (19%)
Query: 129 PPNYLCHLCFNKGHYIKDCPQARPKGE--GLTPYQGK---------KRCFGEYKCP 173
PP +C +C GH DCP+ K + L P + KRCF E P
Sbjct: 910 PPTIVCSICKKDGHSKNDCPEDFRKIDLKPLPPMTNRFREILDLVCKRCFDELSPP 965
>gi|13375938 lin-28 homolog [Homo sapiens]
Length = 209
Score = 30.0 bits (66), Expect = 1.9
Identities = 16/47 (34%), Positives = 19/47 (40%), Gaps = 3/47 (6%)
Query: 123 KPSKRPPPNYLCHLCFNKGHYIKDCPQARPKGEGLTPYQGKKRCFGE 169
K K PP CH C + H + CP +G QGK F E
Sbjct: 150 KECKLPPQPKKCHFCQSISHMVASCPLKAQQGPSA---QGKPTYFRE 193
>gi|24308171 zinc finger protein 280C [Homo sapiens]
Length = 737
Score = 29.6 bits (65), Expect = 2.5
Identities = 25/101 (24%), Positives = 39/101 (38%), Gaps = 23/101 (22%)
Query: 105 LSSLTEHFSDLTLTSEARKPSKRPPPNYLCHLCFNKGHYIKD----------------CP 148
LS TEH L + KP + P Y+C +C + D CP
Sbjct: 390 LSFETEHIL-LQHMKDTHKPGEMP---YVCQVCQFRSSTFSDVEAHFRAAHENTKNLLCP 445
Query: 149 QARPKGEGLTPYQG---KKRCFGEYKCPKCKRKWMSGNSWA 186
+ TPY K + G ++CPKC+ ++++ A
Sbjct: 446 FCLKVSKMATPYMNHYMKHQKKGVHRCPKCRLQFLTSKEKA 486
>gi|37574608 zinc finger protein 189 isoform 2 [Homo sapiens]
Length = 584
Score = 29.6 bits (65), Expect = 2.5
Identities = 15/49 (30%), Positives = 21/49 (42%)
Query: 139 NKGHYIKDCPQARPKGEGLTPYQGKKRCFGEYKCPKCKRKWMSGNSWAN 187
NK H +C +A + GL +Q YKC KC + + S N
Sbjct: 495 NKPHKCDECGKAFSRNSGLIQHQRIHTGEKPYKCEKCDKSFSQQRSLVN 543
>gi|37693525 zinc finger protein 189 isoform 1 [Homo sapiens]
Length = 626
Score = 29.6 bits (65), Expect = 2.5
Identities = 15/49 (30%), Positives = 21/49 (42%)
Query: 139 NKGHYIKDCPQARPKGEGLTPYQGKKRCFGEYKCPKCKRKWMSGNSWAN 187
NK H +C +A + GL +Q YKC KC + + S N
Sbjct: 537 NKPHKCDECGKAFSRNSGLIQHQRIHTGEKPYKCEKCDKSFSQQRSLVN 585
>gi|239741632 PREDICTED: hypothetical protein XP_002342252 [Homo
sapiens]
Length = 494
Score = 29.3 bits (64), Expect = 3.2
Identities = 19/80 (23%), Positives = 31/80 (38%), Gaps = 6/80 (7%)
Query: 108 LTEHFSDLT--LTSEARKPSKRPPPNYLCHLCFNKGHYIKDCPQARPKGEGLTPYQGKKR 165
L E FSD T L + P +C N H ++ + + + Q KKR
Sbjct: 32 LQEAFSDYTSLLPTNGASNISHLTPALAAEVCVNDNHREEEAEEVEQQQQ----QQKKKR 87
Query: 166 CFGEYKCPKCKRKWMSGNSW 185
CF ++C + + + W
Sbjct: 88 CFSPWRCGRTRLNQGTQQHW 107
>gi|124286830 zinc finger protein 618 [Homo sapiens]
Length = 861
Score = 29.3 bits (64), Expect = 3.2
Identities = 36/145 (24%), Positives = 50/145 (34%), Gaps = 25/145 (17%)
Query: 96 GSLNNIADGLSSLTEHFSDLTLTSEARKPSKRPPPNYLCHLCFNKGHYIKDCPQARPKGE 155
G +NNI SD+ E R+ KR NY C C + Y P E
Sbjct: 218 GPMNNIT----------SDIFKKKEVRQCQKRETGNYTCEFCGKQYKYY------TPYQE 261
Query: 156 GLTPYQGKKRCFGEYKCPKCKRKWMSGNSWANMGQE---CIKCHI------NVYPHKQRP 206
+ + K F K + + NS + E C C I N+ H Q
Sbjct: 262 HVALHAPIKSAFSRRVEGKAQNHFEETNSSSQNSSEPYTCGACGIQFQFYNNLLEHMQSH 321
Query: 207 LEKPDGLDVSDQSKEHPQHLCEKCK 231
+ S+QS+ P + EK K
Sbjct: 322 AADNENNIASNQSRSPPAVVEEKWK 346
>gi|54607029 28kD interferon responsive protein [Homo sapiens]
Length = 246
Score = 29.3 bits (64), Expect = 3.2
Identities = 16/58 (27%), Positives = 23/58 (39%), Gaps = 18/58 (31%)
Query: 161 QGKKRCFGEYKCPKCKRKWMSG----------NSWAN--------MGQECIKCHINVY 200
Q ++R FG ++C C+R W S W + GQ C KC + Y
Sbjct: 44 QYQQRAFGWFRCSSCQRSWASAQVQILCHTYWEHWTSQGQVRMRLFGQRCQKCSWSQY 101
>gi|38044290 zinc finger, CCHC domain containing 8 [Homo sapiens]
Length = 707
Score = 29.3 bits (64), Expect = 3.2
Identities = 13/32 (40%), Positives = 19/32 (59%), Gaps = 2/32 (6%)
Query: 120 EARKPSKRPPPNYLCHLCFNKGHYIKDCPQAR 151
E + +KRP P+ C C ++ H +KDCP R
Sbjct: 217 EIQVKAKRPKPH--CFNCGSEEHQMKDCPMPR 246
>gi|24308069 zinc finger protein 521 [Homo sapiens]
Length = 1311
Score = 28.9 bits (63), Expect = 4.2
Identities = 29/118 (24%), Positives = 46/118 (38%), Gaps = 21/118 (17%)
Query: 130 PNYLCHLC--------FNKGHYIKDCPQARPKGEGLTPYQGKKRCFGEYKCPKCKRKWMS 181
P Y C +C + H ++D RP GE + + G YKC C R + S
Sbjct: 884 PMYGCDICGAAYTMETLLQNHQLRD-HNIRP-GESAIVKKKAELIKGNYKCNVCSRTFFS 941
Query: 182 GNSWANMGQECIKCHINVYPHKQRPL---EKPDGLDVSDQSKEHPQHL----CEKCKV 232
N +E ++ H+ H P+ P L +++ H + L C CK+
Sbjct: 942 ENGL----REHMQTHLGPVKHYMCPICGERFPSLLTLTEHKVTHSKSLDTGNCRICKM 995
>gi|125346192 zinc finger protein 790 [Homo sapiens]
Length = 636
Score = 28.9 bits (63), Expect = 4.2
Identities = 22/97 (22%), Positives = 39/97 (40%), Gaps = 6/97 (6%)
Query: 140 KGHYIKDCPQARPKGEGLTPYQGKKRCFGEYKCPKCKRKWMSGNSWANMGQECIKCHINV 199
K H K+C +A +G L +Q YKC KC + ++ W++ + H
Sbjct: 364 KSHECKECGKAFIRGSNLAQHQNVHVGRKPYKCEKCGKAYI----WSSHLARHQRIHTGR 419
Query: 200 YPHKQRPLEKPD--GLDVSDQSKEHPQHLCEKCKVLG 234
P++ + K ++ K H + +CK G
Sbjct: 420 KPYECKQCGKTFTWASYLAQHEKIHNERKSYECKECG 456
>gi|58331199 ring finger and CHY zinc finger domain containing 1
isoform 3 [Homo sapiens]
Length = 252
Score = 28.5 bits (62), Expect = 5.5
Identities = 14/48 (29%), Positives = 22/48 (45%), Gaps = 2/48 (4%)
Query: 192 CIKCHINVYPHKQRPLEKPDGLDVSDQSKEHPQHLCEKCKVL--GYYC 237
C CH N H+ + + ++ + +H Q CE+C L YYC
Sbjct: 40 CRLCHDNNEDHQLDRFKVKEVQCINCEKIQHAQQTCEECSTLFGEYYC 87
>gi|58331197 ring finger and CHY zinc finger domain containing 1
isoform 2 [Homo sapiens]
Length = 200
Score = 28.5 bits (62), Expect = 5.5
Identities = 14/48 (29%), Positives = 22/48 (45%), Gaps = 2/48 (4%)
Query: 192 CIKCHINVYPHKQRPLEKPDGLDVSDQSKEHPQHLCEKCKVL--GYYC 237
C CH N H+ + + ++ + +H Q CE+C L YYC
Sbjct: 40 CRLCHDNNEDHQLDRFKVKEVQCINCEKIQHAQQTCEECSTLFGEYYC 87
>gi|58331195 ring finger and CHY zinc finger domain containing 1
isoform 1 [Homo sapiens]
Length = 261
Score = 28.5 bits (62), Expect = 5.5
Identities = 14/48 (29%), Positives = 22/48 (45%), Gaps = 2/48 (4%)
Query: 192 CIKCHINVYPHKQRPLEKPDGLDVSDQSKEHPQHLCEKCKVL--GYYC 237
C CH N H+ + + ++ + +H Q CE+C L YYC
Sbjct: 40 CRLCHDNNEDHQLDRFKVKEVQCINCEKIQHAQQTCEECSTLFGEYYC 87
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.317 0.134 0.427
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 11,807,811
Number of Sequences: 37866
Number of extensions: 642441
Number of successful extensions: 1751
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 26
Number of HSP's that attempted gapping in prelim test: 1714
Number of HSP's gapped (non-prelim): 68
length of query: 241
length of database: 18,247,518
effective HSP length: 99
effective length of query: 142
effective length of database: 14,498,784
effective search space: 2058827328
effective search space used: 2058827328
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 60 (27.7 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.