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Search of human proteins with 223468622
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|223468622 makorin ring finger protein 1 isoform 2 [Homo
sapiens]
(329 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|223468622 makorin ring finger protein 1 isoform 2 [Homo sapiens] 684 0.0
gi|223468620 makorin ring finger protein 1 isoform 1 [Homo sapiens] 684 0.0
gi|5032243 makorin ring finger protein 3 [Homo sapiens] 322 4e-88
gi|32880199 makorin ring finger protein 2 [Homo sapiens] 263 1e-70
gi|118766347 zinc finger CCCH-type domain containing 6 [Homo sap... 57 2e-08
gi|217416362 zinc finger CCCH-type containing 8 [Homo sapiens] 54 1e-07
gi|126723060 zinc finger CCCH-type containing 4 [Homo sapiens] 54 1e-07
gi|14249452 zinc finger CCCH-type containing 10 [Homo sapiens] 49 8e-06
gi|193788659 cleavage and polyadenylation specific factor 4-like... 49 8e-06
gi|22547197 zinc finger protein of the cerebellum 2 [Homo sapiens] 45 9e-05
gi|155722994 zinc finger CCCH-type containing 3 [Homo sapiens] 45 9e-05
gi|125987603 cleavage and polyadenylation specific factor 4, 30k... 45 1e-04
gi|5729939 cleavage and polyadenylation specific factor 4, 30kDa... 45 1e-04
gi|15812178 zinc finger protein 36, C3H type-like 2 [Homo sapiens] 43 3e-04
gi|39812496 Sp8 transcription factor isoform 1 [Homo sapiens] 43 4e-04
gi|39812501 Sp8 transcription factor isoform 2 [Homo sapiens] 43 4e-04
gi|15812180 butyrate response factor 1 [Homo sapiens] 41 0.001
gi|118150660 erythropoietin 4 immediate early response [Homo sap... 39 0.005
gi|12232413 poly ADP-ribose polymerase 12 [Homo sapiens] 38 0.011
gi|4557595 forkhead box F2 [Homo sapiens] 38 0.011
gi|38788260 bromodomain PHD finger transcription factor isoform ... 38 0.011
gi|38788274 bromodomain PHD finger transcription factor isoform ... 38 0.011
gi|46411170 muscleblind-like 1 isoform e [Homo sapiens] 38 0.011
gi|46411168 muscleblind-like 1 isoform d [Homo sapiens] 38 0.011
gi|4758392 forkhead box D1 [Homo sapiens] 38 0.014
gi|126090909 engrailed homeobox 1 [Homo sapiens] 37 0.019
gi|122937319 even-skipped homeobox 2 [Homo sapiens] 37 0.019
gi|41281831 neuronal PAS domain protein 3 isoform 2 [Homo sapiens] 37 0.019
gi|11545847 neuronal PAS domain protein 3 isoform 1 [Homo sapiens] 37 0.019
gi|7657387 CCR4-NOT transcription complex, subunit 3 [Homo sapiens] 37 0.019
>gi|223468622 makorin ring finger protein 1 isoform 2 [Homo sapiens]
Length = 329
Score = 684 bits (1766), Expect = 0.0
Identities = 329/329 (100%), Positives = 329/329 (100%)
Query: 1 MAEAATPGTTATTSGAGAAAATAAAASPTPIPTVTAPSLGAGGGGGGSDGSGGGWTKQVT 60
MAEAATPGTTATTSGAGAAAATAAAASPTPIPTVTAPSLGAGGGGGGSDGSGGGWTKQVT
Sbjct: 1 MAEAATPGTTATTSGAGAAAATAAAASPTPIPTVTAPSLGAGGGGGGSDGSGGGWTKQVT 60
Query: 61 CRYFMHGVCKEGDNCRYSHDLSDSPYSVVCKYFQRGYCIYGDRCRYEHSKPLKQEEATAT 120
CRYFMHGVCKEGDNCRYSHDLSDSPYSVVCKYFQRGYCIYGDRCRYEHSKPLKQEEATAT
Sbjct: 61 CRYFMHGVCKEGDNCRYSHDLSDSPYSVVCKYFQRGYCIYGDRCRYEHSKPLKQEEATAT 120
Query: 121 ELTTKSSLAASSSLSSIVGPLVEMNTGEAESRNSNFATVGAGSEDWVNAIEFVPGQPYCG 180
ELTTKSSLAASSSLSSIVGPLVEMNTGEAESRNSNFATVGAGSEDWVNAIEFVPGQPYCG
Sbjct: 121 ELTTKSSLAASSSLSSIVGPLVEMNTGEAESRNSNFATVGAGSEDWVNAIEFVPGQPYCG 180
Query: 181 RTAPSCTEAPLQGSVTKEESEKEQTAVETKKQLCPYAAVGECRYGENCVYLHGDSCDMCG 240
RTAPSCTEAPLQGSVTKEESEKEQTAVETKKQLCPYAAVGECRYGENCVYLHGDSCDMCG
Sbjct: 181 RTAPSCTEAPLQGSVTKEESEKEQTAVETKKQLCPYAAVGECRYGENCVYLHGDSCDMCG 240
Query: 241 LQVLHPMDAAQRSQHIKSCIEAHEKDMELSFAVQRSKDMVCGICMEVVYEKANPSERRFG 300
LQVLHPMDAAQRSQHIKSCIEAHEKDMELSFAVQRSKDMVCGICMEVVYEKANPSERRFG
Sbjct: 241 LQVLHPMDAAQRSQHIKSCIEAHEKDMELSFAVQRSKDMVCGICMEVVYEKANPSERRFG 300
Query: 301 ILSNCNHTYCLKCIRKWRSAKQFESKIIK 329
ILSNCNHTYCLKCIRKWRSAKQFESKIIK
Sbjct: 301 ILSNCNHTYCLKCIRKWRSAKQFESKIIK 329
>gi|223468620 makorin ring finger protein 1 isoform 1 [Homo sapiens]
Length = 482
Score = 684 bits (1766), Expect = 0.0
Identities = 329/329 (100%), Positives = 329/329 (100%)
Query: 1 MAEAATPGTTATTSGAGAAAATAAAASPTPIPTVTAPSLGAGGGGGGSDGSGGGWTKQVT 60
MAEAATPGTTATTSGAGAAAATAAAASPTPIPTVTAPSLGAGGGGGGSDGSGGGWTKQVT
Sbjct: 1 MAEAATPGTTATTSGAGAAAATAAAASPTPIPTVTAPSLGAGGGGGGSDGSGGGWTKQVT 60
Query: 61 CRYFMHGVCKEGDNCRYSHDLSDSPYSVVCKYFQRGYCIYGDRCRYEHSKPLKQEEATAT 120
CRYFMHGVCKEGDNCRYSHDLSDSPYSVVCKYFQRGYCIYGDRCRYEHSKPLKQEEATAT
Sbjct: 61 CRYFMHGVCKEGDNCRYSHDLSDSPYSVVCKYFQRGYCIYGDRCRYEHSKPLKQEEATAT 120
Query: 121 ELTTKSSLAASSSLSSIVGPLVEMNTGEAESRNSNFATVGAGSEDWVNAIEFVPGQPYCG 180
ELTTKSSLAASSSLSSIVGPLVEMNTGEAESRNSNFATVGAGSEDWVNAIEFVPGQPYCG
Sbjct: 121 ELTTKSSLAASSSLSSIVGPLVEMNTGEAESRNSNFATVGAGSEDWVNAIEFVPGQPYCG 180
Query: 181 RTAPSCTEAPLQGSVTKEESEKEQTAVETKKQLCPYAAVGECRYGENCVYLHGDSCDMCG 240
RTAPSCTEAPLQGSVTKEESEKEQTAVETKKQLCPYAAVGECRYGENCVYLHGDSCDMCG
Sbjct: 181 RTAPSCTEAPLQGSVTKEESEKEQTAVETKKQLCPYAAVGECRYGENCVYLHGDSCDMCG 240
Query: 241 LQVLHPMDAAQRSQHIKSCIEAHEKDMELSFAVQRSKDMVCGICMEVVYEKANPSERRFG 300
LQVLHPMDAAQRSQHIKSCIEAHEKDMELSFAVQRSKDMVCGICMEVVYEKANPSERRFG
Sbjct: 241 LQVLHPMDAAQRSQHIKSCIEAHEKDMELSFAVQRSKDMVCGICMEVVYEKANPSERRFG 300
Query: 301 ILSNCNHTYCLKCIRKWRSAKQFESKIIK 329
ILSNCNHTYCLKCIRKWRSAKQFESKIIK
Sbjct: 301 ILSNCNHTYCLKCIRKWRSAKQFESKIIK 329
Score = 33.1 bits (74), Expect = 0.35
Identities = 41/200 (20%), Positives = 72/200 (36%), Gaps = 41/200 (20%)
Query: 56 TKQVTCRYFMHGVCKEGDNCRYSHDLSDSPYSVVCKYFQRGYCIYGDRCRYEHSKPLKQE 115
TK+ C Y G C+ G+NC Y H S C D C + P+
Sbjct: 209 TKKQLCPYAAVGECRYGENCVYLHGDS---------------C---DMCGLQVLHPMDAA 250
Query: 116 EAT--------ATELTTKSSLAASSSLSSIVGPLVEMNTGEAESRNSNFATVGAGSEDWV 167
+ + A E + S A S + G +E+ +A F + + +
Sbjct: 251 QRSQHIKSCIEAHEKDMELSFAVQRSKDMVCGICMEVVYEKANPSERRFGILSNCNHTYC 310
Query: 168 NAI--EFVPGQPYCGRTAPSCTEAPLQGSVT-------KEESEKEQTAVETKKQL----C 214
++ + + + SC E + + +E+ EK++ ++ K+ + C
Sbjct: 311 LKCIRKWRSAKQFESKIIKSCPECRITSNFVIPSEYWVEEKEEKQKLILKYKEAMSNKAC 370
Query: 215 PY--AAVGECRYGENCVYLH 232
Y G C +G NC Y H
Sbjct: 371 RYFDEGRGSCPFGGNCFYKH 390
Score = 29.6 bits (65), Expect = 3.9
Identities = 16/44 (36%), Positives = 24/44 (54%), Gaps = 3/44 (6%)
Query: 90 CKYFQ--RGYCIYGDRCRYEHSKP-LKQEEATATELTTKSSLAA 130
C+YF RG C +G C Y+H+ P ++EE ++ T S A
Sbjct: 370 CRYFDEGRGSCPFGGNCFYKHAYPDGRREEPQRQKVGTSSRYRA 413
>gi|5032243 makorin ring finger protein 3 [Homo sapiens]
Length = 507
Score = 322 bits (824), Expect = 4e-88
Identities = 178/351 (50%), Positives = 216/351 (61%), Gaps = 34/351 (9%)
Query: 2 AEAATPGTTATT------SGAGAAAATA---AAASPTPIPTVTAPSLGAGGGGGGSDGSG 52
AEAA G + SG AA +A AA P P P+ GG + SG
Sbjct: 20 AEAAREGVSGPDLPVCEPSGESAAPDSALPHAARGWAPFPVAPVPAHLRRGGLRPAPASG 79
Query: 53 GG-------------WTKQVTCRYFMHGVCKEGDNCRYSHDLSDSPYSVVCKYFQRGYCI 99
GG WTKQ+ CRY++HG CKEG+NCRYSHDLS + G
Sbjct: 80 GGAWPSPLPSRSSGIWTKQIICRYYIHGQCKEGENCRYSHDLSGRKMATEGGVSPPGASA 139
Query: 100 YGDRCRYEHSKPLKQEEATATELTTKSSLAASSSLSSIVGPLVEMNTGEAESRNSNF-AT 158
G H +P QE A A AASS ++G E EAE N++ A
Sbjct: 140 GGGPSTAAHIEPPTQEVAEAPP-------AASSLSLPVIGSAAERGFFEAERDNADRGAA 192
Query: 159 VGAGSEDWVNAIEFVPGQPYCGRTAPSCTEAPLQGSVTKEESEKEQTAVETKKQLCPYAA 218
GAG E W +AIEFVPGQPY GR S EAPLQ S E+E++Q AV + + C YA+
Sbjct: 193 GGAGVESWADAIEFVPGQPYRGRWVASAPEAPLQSS----ETERKQMAVGSGLRFCYYAS 248
Query: 219 VGECRYGENCVYLHGDSCDMCGLQVLHPMDAAQRSQHIKSCIEAHEKDMELSFAVQRSKD 278
G C GE+C+YLHGD CDMCGLQ LHPMDAAQR +H+++CIEAHEKDMELSFAVQR D
Sbjct: 249 RGVCFRGESCMYLHGDICDMCGLQTLHPMDAAQREEHMRACIEAHEKDMELSFAVQRGMD 308
Query: 279 MVCGICMEVVYEKANPSERRFGILSNCNHTYCLKCIRKWRSAKQFESKIIK 329
VCGICMEVVYEKANP++RRFGILSNCNH++C++CIR+WRSA+QFE++I+K
Sbjct: 309 KVCGICMEVVYEKANPNDRRFGILSNCNHSFCIRCIRRWRSARQFENRIVK 359
Score = 37.4 bits (85), Expect = 0.019
Identities = 43/198 (21%), Positives = 73/198 (36%), Gaps = 47/198 (23%)
Query: 61 CRYFMHGVCKEGDNCRYSHDLSDSPYSVVCKYFQRGYCIYGDRCRYEHSKPL---KQEE- 116
C Y GVC G++C Y H +C D C + P+ ++EE
Sbjct: 244 CYYASRGVCFRGESCMYLH-------GDIC-----------DMCGLQTLHPMDAAQREEH 285
Query: 117 ----ATATELTTKSSLAASSSLSSIVGPLVEMNTGEAESRNSNFATVGAGSED------- 165
A E + S A + + G +E+ +A + F + +
Sbjct: 286 MRACIEAHEKDMELSFAVQRGMDKVCGICMEVVYEKANPNDRRFGILSNCNHSFCIRCIR 345
Query: 166 -WVNAIEFVPGQPYCGRTAPSC---TEAPLQGSVTKEESEKEQTAVETKKQL-----CPY 216
W +A +F + ++ P C +E + EE E++Q ++ K+ C Y
Sbjct: 346 RWRSARQF---ENRIVKSCPQCRVTSELVIPSEFWVEEEEEKQKLIQQYKEAMSNKACRY 402
Query: 217 AAVGE--CRYGENCVYLH 232
A G C +G+ C Y H
Sbjct: 403 FAEGRGNCPFGDTCFYKH 420
Score = 30.0 bits (66), Expect = 3.0
Identities = 12/24 (50%), Positives = 15/24 (62%), Gaps = 2/24 (8%)
Query: 90 CKYFQ--RGYCIYGDRCRYEHSKP 111
C+YF RG C +GD C Y+H P
Sbjct: 400 CRYFAEGRGNCPFGDTCFYKHEYP 423
>gi|32880199 makorin ring finger protein 2 [Homo sapiens]
Length = 416
Score = 263 bits (673), Expect = 1e-70
Identities = 130/284 (45%), Positives = 170/284 (59%), Gaps = 10/284 (3%)
Query: 56 TKQVTCRYFMHGVCKEGDNCRYSHDLSDSPYSVVCKYFQRGYCIYGDRCRYEHSKPLKQE 115
TKQ+TCRYFMHGVC+EG C +SHDL++S S +CKY+Q+GYC YG RCRY+H++P
Sbjct: 3 TKQITCRYFMHGVCREGSQCLFSHDLANSKPSTICKYYQKGYCAYGTRCRYDHTRPSAAA 62
Query: 116 EA---TATELTTKSSLAASSSLSSIVGPLVEMNTGEAESRNSNFATVG----AGSEDWVN 168
T + + S + +V+ N+ E R + +G +
Sbjct: 63 GGAVGTMAHSVPSPAFHSPHPPSEVTASIVKTNSHEPGKREKRTLVLRDRNLSGMAERKT 122
Query: 169 AIEFVPGQPYCGRTAPSCTEAP---LQGSVTKEESEKEQTAVETKKQLCPYAAVGECRYG 225
V C PS P L + + + ++ ++QLCPYAA GECR+G
Sbjct: 123 QPSMVSNPGSCSDPQPSPEMKPHSYLDAIRSGLDDVEASSSYSNEQQLCPYAAAGECRFG 182
Query: 226 ENCVYLHGDSCDMCGLQVLHPMDAAQRSQHIKSCIEAHEKDMELSFAVQRSKDMVCGICM 285
+ CVYLHG+ C++C LQVLHP D QR H K C+ E +ME +FA Q S+D VC ICM
Sbjct: 183 DACVYLHGEVCEICRLQVLHPFDPEQRKAHEKICMLTFEHEMEKAFAFQASQDKVCSICM 242
Query: 286 EVVYEKANPSERRFGILSNCNHTYCLKCIRKWRSAKQFESKIIK 329
EV+ EKA+ SERRFGILSNCNHTYCL CIR+WR AKQFE+ IIK
Sbjct: 243 EVILEKASASERRFGILSNCNHTYCLSCIRQWRCAKQFENPIIK 286
Score = 32.3 bits (72), Expect = 0.60
Identities = 58/260 (22%), Positives = 88/260 (33%), Gaps = 57/260 (21%)
Query: 1 MAEAATPGTTATTSGAGAAAATAAAASPTPIPTVTAPSL--GAGGGGGGSDGSGGGWTKQ 58
MAE T + + G+ + P P P + S G + S +Q
Sbjct: 117 MAERKTQPSMVSNPGS--------CSDPQPSPEMKPHSYLDAIRSGLDDVEASSSYSNEQ 168
Query: 59 VTCRYFMHGVCKEGDNCRYSHDLSDSPYSVVCKYFQRGYCIYGDRCRYEHSKPLKQEEAT 118
C Y G C+ GD C Y H VC+ CR + P E+
Sbjct: 169 QLCPYAAAGECRFGDACVYLH-------GEVCEI-----------CRLQVLHPFDPEQRK 210
Query: 119 ATE----LTTKSSL-------AASSSLSSIVGPLVEMNTGEAESR-----NSNFATVGAG 162
A E LT + + A+ + SI ++ +E R N N +
Sbjct: 211 AHEKICMLTFEHEMEKAFAFQASQDKVCSICMEVILEKASASERRFGILSNCNHTYCLSC 270
Query: 163 SEDWVNAIEFVPGQPYCGRTAPSC---TEAPLQGSVTKEESEKEQTAVETKKQ-----LC 214
W A +F P ++ P C +E + E+ K+ +E KQ C
Sbjct: 271 IRQWRCAKQFE--NPII-KSCPECRVISEFVIPSVYWVEDQNKKNELIEAFKQGMGKKAC 327
Query: 215 PYAAVGE--CRYGENCVYLH 232
Y G+ C +G C+Y H
Sbjct: 328 KYFEQGKGTCPFGSKCLYRH 347
Score = 31.6 bits (70), Expect = 1.0
Identities = 15/50 (30%), Positives = 29/50 (58%), Gaps = 5/50 (10%)
Query: 90 CKYFQ--RGYCIYGDRCRYEHSKP---LKQEEATATELTTKSSLAASSSL 134
CKYF+ +G C +G +C Y H+ P L + E +L+++ ++ +S+
Sbjct: 327 CKYFEQGKGTCPFGSKCLYRHAYPDGRLAEPEKPRKQLSSQGTVRFFNSV 376
>gi|118766347 zinc finger CCCH-type domain containing 6 [Homo
sapiens]
Length = 1189
Score = 57.4 bits (137), Expect = 2e-08
Identities = 21/54 (38%), Positives = 34/54 (62%), Gaps = 1/54 (1%)
Query: 57 KQVTCRYFMHGVCKEGDNCRYSHDLSDSPYSVVCKYFQRGYCIYGDRCRYEHSK 110
KQ+ C+YF+ G C +GD C++ HD +CK++ +GYC G+ C Y H++
Sbjct: 275 KQI-CKYFLEGRCIKGDQCKFDHDAELEKRKEICKFYLQGYCTKGENCIYMHNE 327
Score = 37.4 bits (85), Expect = 0.019
Identities = 12/28 (42%), Positives = 20/28 (71%)
Query: 89 VCKYFQRGYCIYGDRCRYEHSKPLKQEE 116
+CKYF G CI GD+C+++H L++ +
Sbjct: 277 ICKYFLEGRCIKGDQCKFDHDAELEKRK 304
Score = 35.8 bits (81), Expect = 0.054
Identities = 14/44 (31%), Positives = 26/44 (59%), Gaps = 3/44 (6%)
Query: 191 LQGSVTKEESEKEQTAVETKKQLCPYAAVGECRYGENCVYLHGD 234
++G K + + E +E +K++C + G C GENC+Y+H +
Sbjct: 287 IKGDQCKFDHDAE---LEKRKEICKFYLQGYCTKGENCIYMHNE 327
Score = 30.4 bits (67), Expect = 2.3
Identities = 10/21 (47%), Positives = 16/21 (76%), Gaps = 1/21 (4%)
Query: 61 CRYFMHGV-CKEGDNCRYSHD 80
C+++ G C +GDNC++SHD
Sbjct: 330 CKFYHSGAKCYQGDNCKFSHD 350
>gi|217416362 zinc finger CCCH-type containing 8 [Homo sapiens]
Length = 291
Score = 54.3 bits (129), Expect = 1e-07
Identities = 20/54 (37%), Positives = 33/54 (61%), Gaps = 1/54 (1%)
Query: 57 KQVTCRYFMHGVCKEGDNCRYSHDLSDSPYSVVCKYFQRGYCIYGDRCRYEHSK 110
KQ+ C+YF+ C +GD C++ HD +CK++ +GYC G+ C Y H++
Sbjct: 194 KQI-CKYFLERKCIKGDQCKFDHDAEIEKKKEMCKFYVQGYCTRGENCLYLHNE 246
Score = 38.1 bits (87), Expect = 0.011
Identities = 16/44 (36%), Positives = 26/44 (59%), Gaps = 3/44 (6%)
Query: 191 LQGSVTKEESEKEQTAVETKKQLCPYAAVGECRYGENCVYLHGD 234
++G K + + E +E KK++C + G C GENC+YLH +
Sbjct: 206 IKGDQCKFDHDAE---IEKKKEMCKFYVQGYCTRGENCLYLHNE 246
Score = 33.9 bits (76), Expect = 0.20
Identities = 10/28 (35%), Positives = 20/28 (71%)
Query: 89 VCKYFQRGYCIYGDRCRYEHSKPLKQEE 116
+CKYF CI GD+C+++H +++++
Sbjct: 196 ICKYFLERKCIKGDQCKFDHDAEIEKKK 223
>gi|126723060 zinc finger CCCH-type containing 4 [Homo sapiens]
Length = 1303
Score = 54.3 bits (129), Expect = 1e-07
Identities = 26/75 (34%), Positives = 37/75 (49%), Gaps = 8/75 (10%)
Query: 42 GGGGGGSDGSG--------GGWTKQVTCRYFMHGVCKEGDNCRYSHDLSDSPYSVVCKYF 93
G GGGGS S +V C+YF+ G C GD+C +SHD+ +CK++
Sbjct: 369 GDGGGGSYRSRDHDKPHQQSDKKGKVICKYFVEGRCTWGDHCNFSHDIELPKKRELCKFY 428
Query: 94 QRGYCIYGDRCRYEH 108
G+C + C Y H
Sbjct: 429 ITGFCARAENCPYMH 443
Score = 40.0 bits (92), Expect = 0.003
Identities = 27/86 (31%), Positives = 35/86 (40%), Gaps = 12/86 (13%)
Query: 39 LGAGGGGGGSDG--SGGGWTKQVTCRYFMHGVCKEGDNCRYS-------HDLSDSPYSVV 89
+G G G GGS G + GG F +G Y H SD V+
Sbjct: 339 MGRGRGRGGSRGGMNKGGMNDDED---FYDEDMGDGGGGSYRSRDHDKPHQQSDKKGKVI 395
Query: 90 CKYFQRGYCIYGDRCRYEHSKPLKQE 115
CKYF G C +GD C + H L ++
Sbjct: 396 CKYFVEGRCTWGDHCNFSHDIELPKK 421
Score = 34.3 bits (77), Expect = 0.16
Identities = 12/25 (48%), Positives = 16/25 (64%)
Query: 210 KKQLCPYAAVGECRYGENCVYLHGD 234
K++LC + G C ENC Y+HGD
Sbjct: 421 KRELCKFYITGFCARAENCPYMHGD 445
Score = 30.4 bits (67), Expect = 2.3
Identities = 20/50 (40%), Positives = 23/50 (46%), Gaps = 4/50 (8%)
Query: 4 AATPGTTATTSGAGAAAATAAAASPTPIPTVTAPSLGAGGGGGGSDGSGG 53
A P TA+ SG + ATA P + A LG GGGGG S G
Sbjct: 1100 AEAPSPTASPSGDASPPATA----PYDPRVLAAGGLGQGGGGGQSSVLSG 1145
>gi|14249452 zinc finger CCCH-type containing 10 [Homo sapiens]
Length = 434
Score = 48.5 bits (114), Expect = 8e-06
Identities = 33/95 (34%), Positives = 42/95 (44%), Gaps = 16/95 (16%)
Query: 35 TAPSLGAGGGGGGSDGSG-----GGWTKQVTCRYFMHGVCKEGDNCRYSH-DLSD----- 83
T S G GGGG + SG GG + CR F+ VCK G CRY H D+S+
Sbjct: 11 TGSSGGGPGGGGSEEASGAGVGSGGASSDAICRDFLRNVCKRGKRCRYRHPDMSEVSNLG 70
Query: 84 --SPYSVVCKYFQRGYCIYGDRCRYEHSKPLKQEE 116
+ C FQ C CR+ H K++E
Sbjct: 71 VSKNEFIFCHDFQNKEC-SRPNCRFIHGS--KEDE 102
>gi|193788659 cleavage and polyadenylation specific factor 4-like
[Homo sapiens]
Length = 179
Score = 48.5 bits (114), Expect = 8e-06
Identities = 20/52 (38%), Positives = 30/52 (57%), Gaps = 2/52 (3%)
Query: 61 CRYFMHGVCKEGDNCRYSHDLSDSPYSVVCKYFQRGYCIYGDRCRYEHSKPL 112
C +F G+C++G C + HD + VVCK++ RG C GD C++ H L
Sbjct: 41 CNFFTKGLCEKGKLCPFRHDRGEK--MVVCKHWLRGLCKKGDHCKFLHQYDL 90
Score = 42.4 bits (98), Expect = 6e-04
Identities = 21/79 (26%), Positives = 36/79 (45%), Gaps = 27/79 (34%)
Query: 57 KQVTCRYFMHGVCKEGDNCRYSH--DLSDSPY-------------------------SVV 89
K V C++++ G+CK+GD+C++ H DL+ P S
Sbjct: 64 KMVVCKHWLRGLCKKGDHCKFLHQYDLTRMPECYFYSKFGDCSNKECSFLHVKPAFKSQD 123
Query: 90 CKYFQRGYCIYGDRCRYEH 108
C ++ +G+C G C+Y H
Sbjct: 124 CPWYDQGFCKDGPLCKYRH 142
Score = 34.3 bits (77), Expect = 0.16
Identities = 14/50 (28%), Positives = 25/50 (50%), Gaps = 5/50 (10%)
Query: 57 KQVTCRYFMHGVCKEGDNCRYSHDLSDSPYSVVCKYFQRGYCIYGDRCRY 106
K C ++ G CK+G C+Y H ++C + G+C G +C++
Sbjct: 120 KSQDCPWYDQGFCKDGPLCKYRH-----VPRIMCLNYLVGFCPEGPKCQF 164
Score = 28.5 bits (62), Expect = 8.6
Identities = 10/28 (35%), Positives = 14/28 (50%)
Query: 83 DSPYSVVCKYFQRGYCIYGDRCRYEHSK 110
D S VC +F +G C G C + H +
Sbjct: 34 DKSASAVCNFFTKGLCEKGKLCPFRHDR 61
>gi|22547197 zinc finger protein of the cerebellum 2 [Homo sapiens]
Length = 532
Score = 45.1 bits (105), Expect = 9e-05
Identities = 26/58 (44%), Positives = 35/58 (60%), Gaps = 4/58 (6%)
Query: 1 MAEAATPGTTATTSGAGAAAATAAAASPTPIPTV----TAPSLGAGGGGGGSDGSGGG 54
++ +A P +++ S A AAAA AAAA+ + V + S GAGGG GG GSGGG
Sbjct: 441 VSPSAEPQSSSNLSPAAAAAAAAAAAAAAAVSAVHRGGGSGSGGAGGGSGGGSGSGGG 498
>gi|155722994 zinc finger CCCH-type containing 3 [Homo sapiens]
Length = 948
Score = 45.1 bits (105), Expect = 9e-05
Identities = 21/53 (39%), Positives = 30/53 (56%), Gaps = 2/53 (3%)
Query: 57 KQVTCRYFMHGVCKEGDNCRYSHDLSDSPYSVVCKYFQRGYCIYGDRCRYEHS 109
K C YF+ G+C NC YSH + S + VC F +GYC G +C+ +H+
Sbjct: 725 KMPVCSYFLKGICSNS-NCPYSH-VYVSRKAEVCSDFLKGYCPLGAKCKKKHT 775
Score = 35.0 bits (79), Expect = 0.092
Identities = 35/142 (24%), Positives = 53/142 (37%), Gaps = 20/142 (14%)
Query: 57 KQVTCRYFMHGVCKEGDNCRYSHDLSDSPYSVVCKYF-QRGYCIYGDRCRYEHSKPLKQE 115
K C F+ G C G C+ H L +C F +RG C G +C+ H +
Sbjct: 752 KAEVCSDFLKGYCPLGAKCKKKHTL-------LCPDFARRGACPRGAQCQLLHRTQKRHS 804
Query: 116 EATATE-LTTKSSLAASSSLSSIVGPLVEMNTGEAESRNSNFATVGAGSEDWVNAIEFVP 174
AT S A S +S+ GP + + + A + A + V
Sbjct: 805 RRAATSPAPGPSDATARSRVSASHGPRKPSASQRPTRQTPSSAALTAAA---------VA 855
Query: 175 GQPYC--GRTAPSCTEAPLQGS 194
P+C G +PS ++A S
Sbjct: 856 APPHCPGGSASPSSSKASSSSS 877
Score = 30.8 bits (68), Expect = 1.7
Identities = 20/51 (39%), Positives = 23/51 (45%), Gaps = 7/51 (13%)
Query: 61 CRYFMH-GVCKEGDNCRYSHDLSDSPYSV-VCKYFQRGYCIYGD-RCRYEH 108
C Y+ G C G+ C Y HD P V VC F RG C D C + H
Sbjct: 673 CMYYNRFGRCNRGERCPYIHD----PEKVAVCTRFVRGTCKKTDGTCPFSH 719
>gi|125987603 cleavage and polyadenylation specific factor 4, 30kDa
isoform 2 [Homo sapiens]
Length = 244
Score = 44.7 bits (104), Expect = 1e-04
Identities = 21/81 (25%), Positives = 37/81 (45%), Gaps = 27/81 (33%)
Query: 57 KQVTCRYFMHGVCKEGDNCRYSHD-------------------------LSDSPYSVV-- 89
K V C++++ G+CK+GD C + H+ L P S +
Sbjct: 64 KTVVCKHWLRGLCKKGDQCEFLHEYDMTKMPECYFYSKFGECSNKECPFLHIDPESKIKD 123
Query: 90 CKYFQRGYCIYGDRCRYEHSK 110
C ++ RG+C +G CR+ H++
Sbjct: 124 CPWYDRGFCKHGPLCRHRHTR 144
Score = 37.0 bits (84), Expect = 0.024
Identities = 22/90 (24%), Positives = 35/90 (38%), Gaps = 16/90 (17%)
Query: 61 CRYFMHGVCKEGDNCRYSHDLSDSPYSVVCKYFQRGYCIYGDRCRYEHSK---------- 110
C ++ G CK G CR+ H V+C + G+C G C++ H +
Sbjct: 124 CPWYDRGFCKHGPLCRHRHTRR-----VICVNYLVGFCPEGPSCKFMHPRFELPMGTTEQ 178
Query: 111 -PLKQEEATATELTTKSSLAASSSLSSIVG 139
PL Q+ + T + S +S G
Sbjct: 179 PPLPQQTQPPAKQRTPQVIGVMQSQNSSAG 208
Score = 29.3 bits (64), Expect = 5.0
Identities = 10/30 (33%), Positives = 18/30 (60%)
Query: 56 TKQVTCRYFMHGVCKEGDNCRYSHDLSDSP 85
T++V C ++ G C EG +C++ H + P
Sbjct: 143 TRRVICVNYLVGFCPEGPSCKFMHPRFELP 172
>gi|5729939 cleavage and polyadenylation specific factor 4, 30kDa
isoform 1 [Homo sapiens]
Length = 269
Score = 44.7 bits (104), Expect = 1e-04
Identities = 21/81 (25%), Positives = 37/81 (45%), Gaps = 27/81 (33%)
Query: 57 KQVTCRYFMHGVCKEGDNCRYSHD-------------------------LSDSPYSVV-- 89
K V C++++ G+CK+GD C + H+ L P S +
Sbjct: 64 KTVVCKHWLRGLCKKGDQCEFLHEYDMTKMPECYFYSKFGECSNKECPFLHIDPESKIKD 123
Query: 90 CKYFQRGYCIYGDRCRYEHSK 110
C ++ RG+C +G CR+ H++
Sbjct: 124 CPWYDRGFCKHGPLCRHRHTR 144
Score = 29.6 bits (65), Expect = 3.9
Identities = 18/91 (19%), Positives = 38/91 (41%), Gaps = 3/91 (3%)
Query: 56 TKQVTCRYFMHGVCKEGDNCRYSHDLSDSPYSVVCKYFQRGYCIYGDRCRYEHSKPLKQE 115
T++V C ++ G C EG +C++ H + P Q + + P Q
Sbjct: 143 TRRVICVNYLVGFCPEGPSCKFMHPRFELPMGTT---EQPPLPQQTQPPAKQSNNPPLQR 199
Query: 116 EATATELTTKSSLAASSSLSSIVGPLVEMNT 146
++ +LT+++S ++G + N+
Sbjct: 200 SSSLIQLTSQNSSPNQQRTPQVIGVMQSQNS 230
>gi|15812178 zinc finger protein 36, C3H type-like 2 [Homo sapiens]
Length = 494
Score = 43.1 bits (100), Expect = 3e-04
Identities = 36/150 (24%), Positives = 60/150 (40%), Gaps = 44/150 (29%)
Query: 4 AATPGTTATT---SGAGAAAATAAAASPTPIPTVTAPSLGAGG----------------- 43
A +PG+ + + G++ +AAA PT T+ PS G G
Sbjct: 68 APSPGSCSPKFPGAANGSSCGSAAAGGPTSYGTLKEPSGGGGTALLNKENKFRDRSFSEN 127
Query: 44 ---------------GGGGSDGSGGGWTKQVTCRYFMHGVCKEGDNCRYSH------DLS 82
GGGGS + + ++ + G CK G+ C+++H L+
Sbjct: 128 GDRSQHLLHLQQQQKGGGGSQINSTRYKTELCRPFEESGTCKYGEKCQFAHGFHELRSLT 187
Query: 83 DSP--YSVVCKYFQR-GYCIYGDRCRYEHS 109
P + +C+ F G+C YG RC + H+
Sbjct: 188 RHPKYKTELCRTFHTIGFCPYGPRCHFIHN 217
Score = 31.6 bits (70), Expect = 1.0
Identities = 12/25 (48%), Positives = 16/25 (64%), Gaps = 1/25 (4%)
Query: 210 KKQLC-PYAAVGECRYGENCVYLHG 233
K +LC P+ G C+YGE C + HG
Sbjct: 155 KTELCRPFEESGTCKYGEKCQFAHG 179
>gi|39812496 Sp8 transcription factor isoform 1 [Homo sapiens]
Length = 508
Score = 42.7 bits (99), Expect = 4e-04
Identities = 25/56 (44%), Positives = 32/56 (57%), Gaps = 8/56 (14%)
Query: 6 TPGTTA----TTSGAGAAAATAAAASPTPI----PTVTAPSLGAGGGGGGSDGSGG 53
+PG++A ++S A AAAA AAAAS +P AP + G GGGG G GG
Sbjct: 110 SPGSSAFSLTSSSAAAAAAAAAAAASSSPFANDYSVFQAPGVSGGSGGGGGGGGGG 165
Score = 28.5 bits (62), Expect = 8.6
Identities = 12/16 (75%), Positives = 12/16 (75%)
Query: 42 GGGGGGSDGSGGGWTK 57
GGGGGGS GSG G K
Sbjct: 459 GGGGGGSAGSGSGGKK 474
>gi|39812501 Sp8 transcription factor isoform 2 [Homo sapiens]
Length = 490
Score = 42.7 bits (99), Expect = 4e-04
Identities = 25/56 (44%), Positives = 32/56 (57%), Gaps = 8/56 (14%)
Query: 6 TPGTTA----TTSGAGAAAATAAAASPTPI----PTVTAPSLGAGGGGGGSDGSGG 53
+PG++A ++S A AAAA AAAAS +P AP + G GGGG G GG
Sbjct: 92 SPGSSAFSLTSSSAAAAAAAAAAAASSSPFANDYSVFQAPGVSGGSGGGGGGGGGG 147
Score = 28.5 bits (62), Expect = 8.6
Identities = 12/16 (75%), Positives = 12/16 (75%)
Query: 42 GGGGGGSDGSGGGWTK 57
GGGGGGS GSG G K
Sbjct: 441 GGGGGGSAGSGSGGKK 456
>gi|15812180 butyrate response factor 1 [Homo sapiens]
Length = 338
Score = 41.2 bits (95), Expect = 0.001
Identities = 27/89 (30%), Positives = 44/89 (49%), Gaps = 12/89 (13%)
Query: 45 GGGSDGSGGGWTKQVTCRYFM-HGVCKEGDNCRYSHDLSD--------SPYSVVCKYFQR 95
GGG S T+ CR F +G CK GD C+++H + + + +C+ F
Sbjct: 106 GGGQVNSSRYKTE--LCRPFEENGACKYGDKCQFAHGIHELRSLTRHPKYKTELCRTFHT 163
Query: 96 -GYCIYGDRCRYEHSKPLKQEEATATELT 123
G+C YG RC + H+ ++ A A +L+
Sbjct: 164 IGFCPYGPRCHFIHNAEERRALAGARDLS 192
Score = 30.0 bits (66), Expect = 3.0
Identities = 11/25 (44%), Positives = 16/25 (64%), Gaps = 1/25 (4%)
Query: 210 KKQLC-PYAAVGECRYGENCVYLHG 233
K +LC P+ G C+YG+ C + HG
Sbjct: 116 KTELCRPFEENGACKYGDKCQFAHG 140
>gi|118150660 erythropoietin 4 immediate early response [Homo
sapiens]
Length = 426
Score = 39.3 bits (90), Expect = 0.005
Identities = 15/32 (46%), Positives = 20/32 (62%)
Query: 51 SGGGWTKQVTCRYFMHGVCKEGDNCRYSHDLS 82
S G K V C +F G C +GD C++SHDL+
Sbjct: 95 SKGADPKSVVCAFFKQGQCTKGDKCKFSHDLT 126
Score = 38.1 bits (87), Expect = 0.011
Identities = 13/31 (41%), Positives = 22/31 (70%)
Query: 85 PYSVVCKYFQRGYCIYGDRCRYEHSKPLKQE 115
P SVVC +F++G C GD+C++ H L+++
Sbjct: 100 PKSVVCAFFKQGQCTKGDKCKFSHDLTLERK 130
>gi|12232413 poly ADP-ribose polymerase 12 [Homo sapiens]
Length = 701
Score = 38.1 bits (87), Expect = 0.011
Identities = 57/272 (20%), Positives = 93/272 (34%), Gaps = 86/272 (31%)
Query: 18 AAAATAAAASPTPIPTVTAPSLGAGGGGGGSDGSGGGWTKQVTCRYFMHGVCK---EGDN 74
A A AAA+P + +P G G G + CR+ ++G CK G N
Sbjct: 52 AVRAGGAAAAPERVVLAASPLRLCRAHQGSKPGCVGLCAQLHLCRFMVYGACKFLRAGKN 111
Query: 75 CRYSHDLS-------------------------------------------DSPYSV--- 88
CR SH L+ D P+
Sbjct: 112 CRNSHSLTTEHNLSVLRTHGVDHLSYNELCQLLFQNDPWLLPEICQHYNKGDGPHGSCAF 171
Query: 89 --------VCKYFQRGYCIYGDRCRYEHSKPLKQEEATATELTTKSSLAASSSLSSIVGP 140
+C+YF +G C +G C+ H + + + L L SS L S + P
Sbjct: 172 QKQCIKLHICQYFLQGECKFGTSCKRSH------DFSNSENLEKLEKLGMSSDLVSRL-P 224
Query: 141 LVEMNTGEAESRNSNFATVGAGSEDWVNAIEFVPGQPYCGRTAPSCTEAPLQGSVTKEES 200
+ N + ++++S + V FVP Q R S + +P ++++EE
Sbjct: 225 TIYRNAHDIKNKSSAPSRVPP---------LFVP-QGTSERKDSSGSVSP--NTLSQEEG 272
Query: 201 EKEQTAVETKKQLCPYAAVGECRYGENCVYLH 232
+ Q+C Y C + + C +H
Sbjct: 273 D----------QICLYHIRKSCSFQDKCHRVH 294
>gi|4557595 forkhead box F2 [Homo sapiens]
Length = 444
Score = 38.1 bits (87), Expect = 0.011
Identities = 19/59 (32%), Positives = 34/59 (57%), Gaps = 3/59 (5%)
Query: 2 AEAATPGTTATTSGAGAAAATAAAASPTPIPTVTAPSLGAGGGGGGSDGSGGGWTKQVT 60
A AA P TT+++S + +A+ ++++S + +APS GGG G+G G K+ +
Sbjct: 37 AAAAAPETTSSSSSSSSASCASSSSSSN---SASAPSAACKSAGGGGAGAGSGGAKKAS 92
>gi|38788260 bromodomain PHD finger transcription factor isoform 2
[Homo sapiens]
Length = 2903
Score = 38.1 bits (87), Expect = 0.011
Identities = 21/54 (38%), Positives = 26/54 (48%), Gaps = 1/54 (1%)
Query: 2 AEAATPGTTATTSGAGAAAATAAAASPTPIPTVT-APSLGAGGGGGGSDGSGGG 54
A+A T +S G +++ P P P T AP G GGGGG G GGG
Sbjct: 54 AQAEVAPKTRLSSPRGGSSSRRKPPPPPPAPPSTSAPGRGGRGGGGGRTGGGGG 107
>gi|38788274 bromodomain PHD finger transcription factor isoform 1
[Homo sapiens]
Length = 2920
Score = 38.1 bits (87), Expect = 0.011
Identities = 21/54 (38%), Positives = 26/54 (48%), Gaps = 1/54 (1%)
Query: 2 AEAATPGTTATTSGAGAAAATAAAASPTPIPTVT-APSLGAGGGGGGSDGSGGG 54
A+A T +S G +++ P P P T AP G GGGGG G GGG
Sbjct: 54 AQAEVAPKTRLSSPRGGSSSRRKPPPPPPAPPSTSAPGRGGRGGGGGRTGGGGG 107
>gi|46411170 muscleblind-like 1 isoform e [Homo sapiens]
Length = 314
Score = 38.1 bits (87), Expect = 0.011
Identities = 24/92 (26%), Positives = 44/92 (47%), Gaps = 10/92 (10%)
Query: 53 GGWTKQVTCRYFMHGVCKEGDN-CRYSH-------DLSDSPYSVVCKYFQRGYCIYGDRC 104
G + V CR + G C G+N CR++H D +D+ + VC + +G C ++C
Sbjct: 109 GAPLQPVVCREYQRGNCNRGENDCRFAHPADSTMIDTNDNTVT-VCMDYIKGRC-SREKC 166
Query: 105 RYEHSKPLKQEEATATELTTKSSLAASSSLSS 136
+Y H Q + A + + AA ++ ++
Sbjct: 167 KYFHPPAHLQAKIKAAQYQVNQAAAAQAAATA 198
Score = 29.3 bits (64), Expect = 5.0
Identities = 19/88 (21%), Positives = 36/88 (40%), Gaps = 9/88 (10%)
Query: 55 WTKQVTCRYFMHGVCKEGD-NCRYSHDLS----DSPYSVVCKYFQRGYCIYGDRCRYEHS 109
W CR F G C D C+++H ++ + C +G C + C+Y H
Sbjct: 13 WLTLEVCREFQRGTCSRPDTECKFAHPSKSCQVENGRVIACFDSLKGRC-SRENCKYLHP 71
Query: 110 KPLKQEEATATELTTKSSLAASSSLSSI 137
P T E+ +++L +++ +
Sbjct: 72 PP---HLKTQLEINGRNNLIQQKNMAML 96
>gi|46411168 muscleblind-like 1 isoform d [Homo sapiens]
Length = 302
Score = 38.1 bits (87), Expect = 0.011
Identities = 24/92 (26%), Positives = 44/92 (47%), Gaps = 10/92 (10%)
Query: 53 GGWTKQVTCRYFMHGVCKEGDN-CRYSH-------DLSDSPYSVVCKYFQRGYCIYGDRC 104
G + V CR + G C G+N CR++H D +D+ + VC + +G C ++C
Sbjct: 109 GAPLQPVVCREYQRGNCNRGENDCRFAHPADSTMIDTNDNTVT-VCMDYIKGRC-SREKC 166
Query: 105 RYEHSKPLKQEEATATELTTKSSLAASSSLSS 136
+Y H Q + A + + AA ++ ++
Sbjct: 167 KYFHPPAHLQAKIKAAQYQVNQAAAAQAAATA 198
Score = 29.3 bits (64), Expect = 5.0
Identities = 19/88 (21%), Positives = 36/88 (40%), Gaps = 9/88 (10%)
Query: 55 WTKQVTCRYFMHGVCKEGD-NCRYSHDLS----DSPYSVVCKYFQRGYCIYGDRCRYEHS 109
W CR F G C D C+++H ++ + C +G C + C+Y H
Sbjct: 13 WLTLEVCREFQRGTCSRPDTECKFAHPSKSCQVENGRVIACFDSLKGRC-SRENCKYLHP 71
Query: 110 KPLKQEEATATELTTKSSLAASSSLSSI 137
P T E+ +++L +++ +
Sbjct: 72 PP---HLKTQLEINGRNNLIQQKNMAML 96
>gi|4758392 forkhead box D1 [Homo sapiens]
Length = 465
Score = 37.7 bits (86), Expect = 0.014
Identities = 18/43 (41%), Positives = 24/43 (55%)
Query: 11 ATTSGAGAAAATAAAASPTPIPTVTAPSLGAGGGGGGSDGSGG 53
A + A A AA AA ASP+P P P+ G+ GGG + + G
Sbjct: 375 AAAAAAAAQAAAAAQASPSPSPVAAPPAPGSSGGGCAAQAAVG 417
Score = 36.2 bits (82), Expect = 0.041
Identities = 17/34 (50%), Positives = 17/34 (50%)
Query: 21 ATAAAASPTPIPTVTAPSLGAGGGGGGSDGSGGG 54
A A SP P A GAGGGGGG GGG
Sbjct: 80 APPAGGSPAPPGPAPAAGAGAGGGGGGGGAGGGG 113
Score = 31.6 bits (70), Expect = 1.0
Identities = 18/41 (43%), Positives = 20/41 (48%), Gaps = 1/41 (2%)
Query: 18 AAAATAAAASPTPIPTVTAPSLGAGGGGG-GSDGSGGGWTK 57
A A + A P P P A + G GGGGG G GS G K
Sbjct: 80 APPAGGSPAPPGPAPAAGAGAGGGGGGGGAGGGGSAGSGAK 120
>gi|126090909 engrailed homeobox 1 [Homo sapiens]
Length = 392
Score = 37.4 bits (85), Expect = 0.019
Identities = 23/56 (41%), Positives = 28/56 (50%), Gaps = 4/56 (7%)
Query: 2 AEAATPGTTATTSGAGAAAATAAAASPTPIPTVTAPSLGAGGGGGGSDGSGGGWTK 57
A A+ G A + A AAA AAAA+ P+ T G GG GGG+ G TK
Sbjct: 190 AGASKAGNPAAAAAAAAAAVAAAAAAAAAKPSDT----GGGGSGGGAGSPGAQGTK 241
Score = 36.6 bits (83), Expect = 0.032
Identities = 21/50 (42%), Positives = 24/50 (48%)
Query: 4 AATPGTTATTSGAGAAAATAAAASPTPIPTVTAPSLGAGGGGGGSDGSGG 53
AA G + + A AAAA AAA + PS GGG GG GS G
Sbjct: 187 AAGAGASKAGNPAAAAAAAAAAVAAAAAAAAAKPSDTGGGGSGGGAGSPG 236
Score = 33.9 bits (76), Expect = 0.20
Identities = 25/66 (37%), Positives = 31/66 (46%), Gaps = 7/66 (10%)
Query: 8 GTTATTSGAGA------AAATAAAASPTPIPTVTAPSLGAGGGGGGSDGSGGGWTKQVTC 61
G+ +GAGA AAA AAAA+ A + + GGGGS G G Q T
Sbjct: 182 GSQPAAAGAGASKAGNPAAAAAAAAAAVAAAAAAAAAKPSDTGGGGSGGGAGSPGAQGT- 240
Query: 62 RYFMHG 67
+Y HG
Sbjct: 241 KYPEHG 246
Score = 33.9 bits (76), Expect = 0.20
Identities = 19/51 (37%), Positives = 25/51 (49%)
Query: 2 AEAATPGTTATTSGAGAAAATAAAASPTPIPTVTAPSLGAGGGGGGSDGSG 52
++ A G A+ +G AAAA AAAA+ A GGGG G+G
Sbjct: 183 SQPAAAGAGASKAGNPAAAAAAAAAAVAAAAAAAAAKPSDTGGGGSGGGAG 233
>gi|122937319 even-skipped homeobox 2 [Homo sapiens]
Length = 476
Score = 37.4 bits (85), Expect = 0.019
Identities = 30/82 (36%), Positives = 32/82 (39%), Gaps = 29/82 (35%)
Query: 2 AEAATPGTTATTSGAGAAAATAAAASPT-----PIPTVTAP------------------- 37
A AA G + S A AAAA AAAAS P +AP
Sbjct: 346 APAAAAGLNSAASAAAAAAAAAAAASSAAAAGAPPSGGSAPCSCLSCHSSQSAAAAAAAA 405
Query: 38 -----SLGAGGGGGGSDGSGGG 54
S G GGGGGG G GGG
Sbjct: 406 AAALGSRGGGGGGGGGGGGGGG 427
Score = 33.9 bits (76), Expect = 0.20
Identities = 17/43 (39%), Positives = 22/43 (51%)
Query: 19 AAATAAAASPTPIPTVTAPSLGAGGGGGGSDGSGGGWTKQVTC 61
+AA AAAA+ + + G GGGGGG G+G G C
Sbjct: 397 SAAAAAAAAAAALGSRGGGGGGGGGGGGGGGGAGAGGGSDFGC 439
Score = 32.0 bits (71), Expect = 0.78
Identities = 19/44 (43%), Positives = 22/44 (50%), Gaps = 7/44 (15%)
Query: 11 ATTSGAGAAAATAAAASPTPIPTVTAPSLGAGGGGGGSDGSGGG 54
++ S A AAAA AAA + G GGGGGG G G G
Sbjct: 394 SSQSAAAAAAAAAAALG-------SRGGGGGGGGGGGGGGGGAG 430
>gi|41281831 neuronal PAS domain protein 3 isoform 2 [Homo sapiens]
Length = 920
Score = 37.4 bits (85), Expect = 0.019
Identities = 22/49 (44%), Positives = 24/49 (48%), Gaps = 6/49 (12%)
Query: 12 TTSGAGAAAATAAAASPTPIPTVTA------PSLGAGGGGGGSDGSGGG 54
T GA A AA A AS P ++A P G GGGGGG GGG
Sbjct: 716 TQFGASATAALAPVASDPLSPPLSASPRDKHPGNGGGGGGGGGGAGGGG 764
>gi|11545847 neuronal PAS domain protein 3 isoform 1 [Homo sapiens]
Length = 901
Score = 37.4 bits (85), Expect = 0.019
Identities = 22/49 (44%), Positives = 24/49 (48%), Gaps = 6/49 (12%)
Query: 12 TTSGAGAAAATAAAASPTPIPTVTA------PSLGAGGGGGGSDGSGGG 54
T GA A AA A AS P ++A P G GGGGGG GGG
Sbjct: 697 TQFGASATAALAPVASDPLSPPLSASPRDKHPGNGGGGGGGGGGAGGGG 745
>gi|7657387 CCR4-NOT transcription complex, subunit 3 [Homo sapiens]
Length = 753
Score = 37.4 bits (85), Expect = 0.019
Identities = 29/87 (33%), Positives = 40/87 (45%), Gaps = 6/87 (6%)
Query: 2 AEAATPGTTATTSGAGAAAATAAAASPTPIPTVTAPSLGAGGGGGGSDGSGGGWTKQVTC 61
A + GT A + A A A + ++ P P PS+ GGGGG GSGGG + +
Sbjct: 360 APSHNSGTPAPYAQAVAPPAPSGPSTTQPRP----PSVQPSGGGGG--GSGGGGSSSSSN 413
Query: 62 RYFMHGVCKEGDNCRYSHDLSDSPYSV 88
G K+ YS ++DSP V
Sbjct: 414 SSAGGGAGKQNGATSYSSVVADSPAEV 440
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.315 0.129 0.396
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 13,917,274
Number of Sequences: 37866
Number of extensions: 705514
Number of successful extensions: 12469
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 259
Number of HSP's successfully gapped in prelim test: 201
Number of HSP's that attempted gapping in prelim test: 8497
Number of HSP's gapped (non-prelim): 2819
length of query: 329
length of database: 18,247,518
effective HSP length: 103
effective length of query: 226
effective length of database: 14,347,320
effective search space: 3242494320
effective search space used: 3242494320
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 62 (28.5 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.