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Search of human proteins with 222537761
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|222537761 hypothetical protein LOC387763 [Homo sapiens]
(122 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|222537761 hypothetical protein LOC387763 [Homo sapiens] 243 2e-65
gi|14249488 zinc finger and SCAN domain containing 10 [Homo sapi... 36 0.006
gi|154426272 hypothetical protein LOC54540 [Homo sapiens] 35 0.011
gi|150417973 supervillin isoform 2 [Homo sapiens] 31 0.26
gi|150417971 supervillin isoform 1 [Homo sapiens] 31 0.26
gi|55741709 RNA binding motif protein 25 [Homo sapiens] 30 0.34
gi|118421089 chromodomain helicase DNA binding protein 2 isoform... 30 0.45
gi|110611184 chromodomain helicase DNA binding protein 2 isoform... 30 0.45
gi|50409738 SRp25 nuclear protein isoform 3 [Homo sapiens] 30 0.58
gi|219842214 protein phosphatase 1, regulatory (inhibitor) subun... 29 1.00
gi|219842212 protein phosphatase 1, regulatory (inhibitor) subun... 29 1.00
gi|4505317 protein phosphatase 1, regulatory (inhibitor) subunit... 29 1.00
gi|4503249 DEK oncogene isoform 1 [Homo sapiens] 29 1.00
gi|13027602 DDRGK domain containing 1 [Homo sapiens] 29 1.00
gi|203098098 shroom family member 3 protein [Homo sapiens] 28 1.3
gi|45446740 ATP-binding cassette, sub-family A, member 2 isoform... 28 1.3
gi|47078218 ATP-binding cassette, sub-family A, member 2 isoform... 28 1.3
gi|154354979 myosin X [Homo sapiens] 28 1.3
gi|221219020 NYD-SP11 protein [Homo sapiens] 28 1.7
gi|239744025 PREDICTED: hypothetical protein XP_002343006 [Homo ... 28 2.2
gi|4557719 DNA ligase I [Homo sapiens] 28 2.2
gi|110349788 absent, small, or homeotic 1-like [Homo sapiens] 28 2.2
gi|27894310 interleukin 1 family, member 5 [Homo sapiens] 28 2.2
gi|6912432 interleukin 1 family, member 5 [Homo sapiens] 28 2.2
gi|14195601 protein phosphatase 1, regulatory (inhibitor) subuni... 28 2.2
gi|4505319 protein phosphatase 1, regulatory (inhibitor) subunit... 28 2.2
gi|187761317 tet oncogene family member 2 isoform a [Homo sapiens] 27 2.9
gi|157671951 solute carrier family 4, anion exchanger, member 3 ... 27 2.9
gi|63999048 syntaxin binding protein 4 [Homo sapiens] 27 2.9
gi|157671953 solute carrier family 4, anion exchanger, member 3 ... 27 2.9
>gi|222537761 hypothetical protein LOC387763 [Homo sapiens]
Length = 122
Score = 243 bits (621), Expect = 2e-65
Identities = 122/122 (100%), Positives = 122/122 (100%)
Query: 1 MAAKPGELMGICSSYQAVMPHFVCLADEFPQPVRPAKLPKGRGRLRRPRQSRFKTQPVTF 60
MAAKPGELMGICSSYQAVMPHFVCLADEFPQPVRPAKLPKGRGRLRRPRQSRFKTQPVTF
Sbjct: 1 MAAKPGELMGICSSYQAVMPHFVCLADEFPQPVRPAKLPKGRGRLRRPRQSRFKTQPVTF 60
Query: 61 DEIQEVEEEGVSPMEEEKAKKSFLQSLECLRRSTQSLSLQREQLSSCKLRNSLDSSDSDS 120
DEIQEVEEEGVSPMEEEKAKKSFLQSLECLRRSTQSLSLQREQLSSCKLRNSLDSSDSDS
Sbjct: 61 DEIQEVEEEGVSPMEEEKAKKSFLQSLECLRRSTQSLSLQREQLSSCKLRNSLDSSDSDS 120
Query: 121 AL 122
AL
Sbjct: 121 AL 122
>gi|14249488 zinc finger and SCAN domain containing 10 [Homo
sapiens]
Length = 725
Score = 36.2 bits (82), Expect = 0.006
Identities = 25/69 (36%), Positives = 34/69 (49%), Gaps = 4/69 (5%)
Query: 26 ADEFPQPVRPAKLPKGRGRLRRPRQSRFKTQP---VTFDEIQEVEEEGVSPMEEEKAKKS 82
+DE P+P A P G+ R P S+ P TF +QE +G SP EE ++
Sbjct: 123 SDEPPRPQPRAAQPAEPGQWRLPPSSKQPLSPGPQKTFQALQESSPQGPSPWPEESSRDQ 182
Query: 83 FLQS-LECL 90
L + LECL
Sbjct: 183 ELAAVLECL 191
>gi|154426272 hypothetical protein LOC54540 [Homo sapiens]
Length = 789
Score = 35.4 bits (80), Expect = 0.011
Identities = 25/96 (26%), Positives = 43/96 (44%), Gaps = 10/96 (10%)
Query: 5 PGELMGICSSYQAVMPHFVCLADEFPQPVRPAKLPKGRGRLRRPRQSRFKTQPVTFDEIQ 64
PGE ++V P P P RP LP+G+GR RR R + K D
Sbjct: 687 PGEAKARPQEQESVQP---------PGPARPQSLPQGKGRSRRSRNKQEKPASSLDDVFL 737
Query: 65 EVEEEGVSPMEEEKAKKSFLQ-SLECLRRSTQSLSL 99
+ +GV E ++ + F + L+ +++ Q +++
Sbjct: 738 PKDMDGVEMDETDREVEYFKRFCLDSAKQTRQKVAV 773
>gi|150417973 supervillin isoform 2 [Homo sapiens]
Length = 2214
Score = 30.8 bits (68), Expect = 0.26
Identities = 17/52 (32%), Positives = 30/52 (57%), Gaps = 1/52 (1%)
Query: 23 VCLADEFPQPVRPAKLPKGRGRLRRPRQS-RFKTQPVTFDEIQEVEEEGVSP 73
+ L ++ QPV A + R R+ R + R++TQPVT E+++V+ + P
Sbjct: 819 LALFNKLSQPVSKAISTRNRIDTRQRRMNARYQTQPVTLGEVEQVQSGKLIP 870
>gi|150417971 supervillin isoform 1 [Homo sapiens]
Length = 1788
Score = 30.8 bits (68), Expect = 0.26
Identities = 17/52 (32%), Positives = 30/52 (57%), Gaps = 1/52 (1%)
Query: 23 VCLADEFPQPVRPAKLPKGRGRLRRPRQS-RFKTQPVTFDEIQEVEEEGVSP 73
+ L ++ QPV A + R R+ R + R++TQPVT E+++V+ + P
Sbjct: 393 LALFNKLSQPVSKAISTRNRIDTRQRRMNARYQTQPVTLGEVEQVQSGKLIP 444
>gi|55741709 RNA binding motif protein 25 [Homo sapiens]
Length = 843
Score = 30.4 bits (67), Expect = 0.34
Identities = 24/77 (31%), Positives = 38/77 (49%), Gaps = 9/77 (11%)
Query: 25 LADEFPQPVRPAKLPKGRGRLRRPRQSRFKTQPVTFDEI---QEVEEEGVSPMEEEKAKK 81
LA+ P P A+L + R RQ + K +P + +E QE EE+ PMEEE+
Sbjct: 551 LAEGHPDP--DAELQRMEQEAERRRQPQIKQEPESEEEEEEKQEKEEKREEPMEEEEEP- 607
Query: 82 SFLQSLECLRRSTQSLS 98
+ CL+ + + +S
Sbjct: 608 ---EQKPCLKPTLRPIS 621
>gi|118421089 chromodomain helicase DNA binding protein 2 isoform 1
[Homo sapiens]
Length = 1828
Score = 30.0 bits (66), Expect = 0.45
Identities = 21/81 (25%), Positives = 36/81 (44%), Gaps = 6/81 (7%)
Query: 39 PKGRGRLRRPRQSRFKTQPVTFDEIQEVEEEGVSPMEEEKAKKSFLQSLECLRRSTQSLS 98
PK RG+ + +Q ++K +P E E+E + E E +K RR+
Sbjct: 137 PKRRGQRQLKKQEKWKQEP------SEDEQEQGTSAESEPEQKKVKARRPVPRRTVPKPR 190
Query: 99 LQREQLSSCKLRNSLDSSDSD 119
++++ + R DSSD D
Sbjct: 191 VKKQPKTQRGKRKKQDSSDED 211
>gi|110611184 chromodomain helicase DNA binding protein 2 isoform 2
[Homo sapiens]
Length = 501
Score = 30.0 bits (66), Expect = 0.45
Identities = 21/81 (25%), Positives = 36/81 (44%), Gaps = 6/81 (7%)
Query: 39 PKGRGRLRRPRQSRFKTQPVTFDEIQEVEEEGVSPMEEEKAKKSFLQSLECLRRSTQSLS 98
PK RG+ + +Q ++K +P E E+E + E E +K RR+
Sbjct: 137 PKRRGQRQLKKQEKWKQEP------SEDEQEQGTSAESEPEQKKVKARRPVPRRTVPKPR 190
Query: 99 LQREQLSSCKLRNSLDSSDSD 119
++++ + R DSSD D
Sbjct: 191 VKKQPKTQRGKRKKQDSSDED 211
>gi|50409738 SRp25 nuclear protein isoform 3 [Homo sapiens]
Length = 352
Score = 29.6 bits (65), Expect = 0.58
Identities = 23/81 (28%), Positives = 35/81 (43%), Gaps = 7/81 (8%)
Query: 40 KGRGRLRRPRQSRFKTQPVTFDEIQEVEEEGVSPMEEEKAKKSFLQSLECLRRSTQSLSL 99
+GRG +R ++SR T + + +P EE++K+ RR T+S S
Sbjct: 140 RGRGSEKRKKKSRKDTSRNCSASTSQGRKASTAPGAEERSKQK-------ARRRTRSSSS 192
Query: 100 QREQLSSCKLRNSLDSSDSDS 120
SS +S SS S S
Sbjct: 193 SSSSSSSSSSSSSSSSSSSSS 213
>gi|219842214 protein phosphatase 1, regulatory (inhibitor) subunit
12A isoform b [Homo sapiens]
Length = 943
Score = 28.9 bits (63), Expect = 1.00
Identities = 17/38 (44%), Positives = 22/38 (57%), Gaps = 1/38 (2%)
Query: 32 PVRPAKLPKGR-GRLRRPRQSRFKTQPVTFDEIQEVEE 68
PVR + R R R+ RQSR TQ VT ++QE E+
Sbjct: 585 PVRDEESESQRKARSRQARQSRRSTQGVTLTDLQEAEK 622
Score = 26.6 bits (57), Expect = 4.9
Identities = 32/117 (27%), Positives = 49/117 (41%), Gaps = 17/117 (14%)
Query: 4 KPGELMGICSSYQAVMPHFVCLADEFPQPVRPAK---LPKGRGRLRRPRQSRFKTQPVTF 60
+P L+GI S+Y + E + + + PK RRPR+ R ++ V+F
Sbjct: 712 RPNSLVGITSAYSRGITKENEREGEKREEEKEGEDKSQPKSIRERRRPREKR-RSTGVSF 770
Query: 61 --DEIQEVEEEGVSPMEEEKAKKSFLQSLECLRRSTQSLSLQREQLSSCKLRNSLDS 115
+ E E+E S EE KK TQ+ S+ R + SS + DS
Sbjct: 771 WTQDSDENEQEQQSDTEEGSNKK-----------ETQTDSISRYETSSTSAGDRYDS 816
>gi|219842212 protein phosphatase 1, regulatory (inhibitor) subunit
12A isoform a [Homo sapiens]
Length = 1030
Score = 28.9 bits (63), Expect = 1.00
Identities = 17/38 (44%), Positives = 22/38 (57%), Gaps = 1/38 (2%)
Query: 32 PVRPAKLPKGR-GRLRRPRQSRFKTQPVTFDEIQEVEE 68
PVR + R R R+ RQSR TQ VT ++QE E+
Sbjct: 672 PVRDEESESQRKARSRQARQSRRSTQGVTLTDLQEAEK 709
Score = 26.6 bits (57), Expect = 4.9
Identities = 32/117 (27%), Positives = 49/117 (41%), Gaps = 17/117 (14%)
Query: 4 KPGELMGICSSYQAVMPHFVCLADEFPQPVRPAK---LPKGRGRLRRPRQSRFKTQPVTF 60
+P L+GI S+Y + E + + + PK RRPR+ R ++ V+F
Sbjct: 799 RPNSLVGITSAYSRGITKENEREGEKREEEKEGEDKSQPKSIRERRRPREKR-RSTGVSF 857
Query: 61 --DEIQEVEEEGVSPMEEEKAKKSFLQSLECLRRSTQSLSLQREQLSSCKLRNSLDS 115
+ E E+E S EE KK TQ+ S+ R + SS + DS
Sbjct: 858 WTQDSDENEQEQQSDTEEGSNKK-----------ETQTDSISRYETSSTSAGDRYDS 903
>gi|4505317 protein phosphatase 1, regulatory (inhibitor) subunit
12A isoform a [Homo sapiens]
Length = 1030
Score = 28.9 bits (63), Expect = 1.00
Identities = 17/38 (44%), Positives = 22/38 (57%), Gaps = 1/38 (2%)
Query: 32 PVRPAKLPKGR-GRLRRPRQSRFKTQPVTFDEIQEVEE 68
PVR + R R R+ RQSR TQ VT ++QE E+
Sbjct: 672 PVRDEESESQRKARSRQARQSRRSTQGVTLTDLQEAEK 709
Score = 26.6 bits (57), Expect = 4.9
Identities = 32/117 (27%), Positives = 49/117 (41%), Gaps = 17/117 (14%)
Query: 4 KPGELMGICSSYQAVMPHFVCLADEFPQPVRPAK---LPKGRGRLRRPRQSRFKTQPVTF 60
+P L+GI S+Y + E + + + PK RRPR+ R ++ V+F
Sbjct: 799 RPNSLVGITSAYSRGITKENEREGEKREEEKEGEDKSQPKSIRERRRPREKR-RSTGVSF 857
Query: 61 --DEIQEVEEEGVSPMEEEKAKKSFLQSLECLRRSTQSLSLQREQLSSCKLRNSLDS 115
+ E E+E S EE KK TQ+ S+ R + SS + DS
Sbjct: 858 WTQDSDENEQEQQSDTEEGSNKK-----------ETQTDSISRYETSSTSAGDRYDS 903
>gi|4503249 DEK oncogene isoform 1 [Homo sapiens]
Length = 375
Score = 28.9 bits (63), Expect = 1.00
Identities = 21/72 (29%), Positives = 33/72 (45%), Gaps = 5/72 (6%)
Query: 36 AKLPKGRGRLRRPRQSRFKTQPVTFDEIQEVEEEGVSPMEEEKAKKSFL-----QSLECL 90
A +G G +P + P +E +E E+E EEE+ +KS + + +
Sbjct: 5 APAAEGEGTPTQPASEKEPEMPGPREESEEEEDEDDEEEEEEEKEKSLIVEGKREKKKVE 64
Query: 91 RRSTQSLSLQRE 102
R + Q SLQRE
Sbjct: 65 RLTMQVSSLQRE 76
>gi|13027602 DDRGK domain containing 1 [Homo sapiens]
Length = 314
Score = 28.9 bits (63), Expect = 1.00
Identities = 20/55 (36%), Positives = 29/55 (52%), Gaps = 7/55 (12%)
Query: 30 PQPVRPAKLPKGRGRLRRPR------QSRFKTQPVTFDEIQEVEEEGVSPMEEEK 78
P P+ P + P+ GR RR R Q++ + Q V + E E EEE V +EE+
Sbjct: 50 PGPLEPEE-PRAGGRPRRRRDLGSRLQAQRRAQRVAWAEADENEEEAVILAQEEE 103
>gi|203098098 shroom family member 3 protein [Homo sapiens]
Length = 1996
Score = 28.5 bits (62), Expect = 1.3
Identities = 18/65 (27%), Positives = 31/65 (47%)
Query: 28 EFPQPVRPAKLPKGRGRLRRPRQSRFKTQPVTFDEIQEVEEEGVSPMEEEKAKKSFLQSL 87
+ +PV PA R RL ++ R ++P +E+ VEE +P+ ++ F +S
Sbjct: 994 DLARPVPPAARRGARRRLTPEQKKRSYSEPEKMNEVGIVEEAEPAPLGPQRNGMRFPESS 1053
Query: 88 ECLRR 92
RR
Sbjct: 1054 VADRR 1058
>gi|45446740 ATP-binding cassette, sub-family A, member 2 isoform a
[Homo sapiens]
Length = 2436
Score = 28.5 bits (62), Expect = 1.3
Identities = 16/47 (34%), Positives = 27/47 (57%), Gaps = 2/47 (4%)
Query: 45 LRRPRQSRFKTQPVTFDEIQEV--EEEGVSPMEEEKAKKSFLQSLEC 89
L RPR + + + + DE +++ E+EG+ EEE+A+ SF C
Sbjct: 2390 LLRPRSAPTELRALVADEPEDLDTEDEGLISFEEERAQLSFNTDTLC 2436
>gi|47078218 ATP-binding cassette, sub-family A, member 2 isoform b
[Homo sapiens]
Length = 2466
Score = 28.5 bits (62), Expect = 1.3
Identities = 16/47 (34%), Positives = 27/47 (57%), Gaps = 2/47 (4%)
Query: 45 LRRPRQSRFKTQPVTFDEIQEV--EEEGVSPMEEEKAKKSFLQSLEC 89
L RPR + + + + DE +++ E+EG+ EEE+A+ SF C
Sbjct: 2420 LLRPRSAPTELRALVADEPEDLDTEDEGLISFEEERAQLSFNTDTLC 2466
>gi|154354979 myosin X [Homo sapiens]
Length = 2058
Score = 28.5 bits (62), Expect = 1.3
Identities = 19/65 (29%), Positives = 32/65 (49%), Gaps = 8/65 (12%)
Query: 46 RRPRQSRFKTQPVTFDEIQEVEEEGVSPMEEE--KAKKSFLQSL------ECLRRSTQSL 97
R Q + ++QE ++ + +EEE +A + FL+SL EC+R +SL
Sbjct: 902 RMKEQQELSLTEASLQKLQERRDQELRRLEEEACRAAQEFLESLNFDEIDECVRNIERSL 961
Query: 98 SLQRE 102
S+ E
Sbjct: 962 SVGSE 966
>gi|221219020 NYD-SP11 protein [Homo sapiens]
Length = 2873
Score = 28.1 bits (61), Expect = 1.7
Identities = 22/68 (32%), Positives = 30/68 (44%), Gaps = 15/68 (22%)
Query: 62 EIQEVEEEGVSPMEEEKAKKS--------------FLQSLECL-RRSTQSLSLQREQLSS 106
E +E EE+ V EEEK KK F + E + T+SLS + E+ S
Sbjct: 2271 EEEEGEEKQVEKEEEEKKKKKKEKKKEEVQEKEEVFEEKEEIMSEEETESLSDEEEEEES 2330
Query: 107 CKLRNSLD 114
C L +D
Sbjct: 2331 CSLEEEVD 2338
>gi|239744025 PREDICTED: hypothetical protein XP_002343006 [Homo
sapiens]
Length = 265
Score = 27.7 bits (60), Expect = 2.2
Identities = 21/98 (21%), Positives = 41/98 (41%), Gaps = 5/98 (5%)
Query: 26 ADEFPQPVRPAKLPKGR-----GRLRRPRQSRFKTQPVTFDEIQEVEEEGVSPMEEEKAK 80
A E + KL K R GR + R+S K + D E EE+ P ++A
Sbjct: 108 AKEIQEDKHTGKLEKPRPSVSHGRAQLLRKSAEKIEETVSDSSSESEEDEEPPDHRQEAS 167
Query: 81 KSFLQSLECLRRSTQSLSLQREQLSSCKLRNSLDSSDS 118
+++ + L ++ + + SC ++ + ++ S
Sbjct: 168 ADLPSEYWQIQKLVKYLKIREQSIFSCPSKDFMLATSS 205
>gi|4557719 DNA ligase I [Homo sapiens]
Length = 919
Score = 27.7 bits (60), Expect = 2.2
Identities = 17/53 (32%), Positives = 23/53 (43%), Gaps = 1/53 (1%)
Query: 31 QPVRPAKLPKGRGRLRRPRQSRFKTQPVTFDEIQEVEEEGVSPMEEEKAKKSF 83
QP P K P + P +S + + T E+QE EE+ P K SF
Sbjct: 180 QPTTPPK-PLKTSKAETPTESVSEPEVATKQELQEEEEQTKPPRRAPKTLSSF 231
>gi|110349788 absent, small, or homeotic 1-like [Homo sapiens]
Length = 2964
Score = 27.7 bits (60), Expect = 2.2
Identities = 19/67 (28%), Positives = 30/67 (44%), Gaps = 4/67 (5%)
Query: 29 FPQPVRPAKLPKGRGRLRRPRQSRFKTQPVTFDEIQEVEEEGVSPMEEE----KAKKSFL 84
F Q + + PK RGR +R +S K +P V E S +E E ++ F
Sbjct: 877 FKQGLSVSPFPKKRGRPKRQMRSPVKMKPPVLSVAPFVATESPSKLESESDNHRSSSDFF 936
Query: 85 QSLECLR 91
+S + L+
Sbjct: 937 ESEDQLQ 943
>gi|27894310 interleukin 1 family, member 5 [Homo sapiens]
Length = 155
Score = 27.7 bits (60), Expect = 2.2
Identities = 15/37 (40%), Positives = 21/37 (56%), Gaps = 2/37 (5%)
Query: 9 MGICSSYQ--AVMPHFVCLADEFPQPVRPAKLPKGRG 43
MG+ SS++ A F+C E QPVR +LP+ G
Sbjct: 105 MGLTSSFESAAYPGWFLCTVPEADQPVRLTQLPENGG 141
>gi|6912432 interleukin 1 family, member 5 [Homo sapiens]
Length = 155
Score = 27.7 bits (60), Expect = 2.2
Identities = 15/37 (40%), Positives = 21/37 (56%), Gaps = 2/37 (5%)
Query: 9 MGICSSYQ--AVMPHFVCLADEFPQPVRPAKLPKGRG 43
MG+ SS++ A F+C E QPVR +LP+ G
Sbjct: 105 MGLTSSFESAAYPGWFLCTVPEADQPVRLTQLPENGG 141
>gi|14195601 protein phosphatase 1, regulatory (inhibitor) subunit
12B isoform b [Homo sapiens]
Length = 998
Score = 27.7 bits (60), Expect = 2.2
Identities = 14/40 (35%), Positives = 22/40 (55%)
Query: 42 RGRLRRPRQSRFKTQPVTFDEIQEVEEEGVSPMEEEKAKK 81
+ R R+ RQ+R TQ VT ++QE E E +A++
Sbjct: 633 KARSRQARQTRRSTQGVTLTDLQEAERTFSRSRAERQAQE 672
>gi|4505319 protein phosphatase 1, regulatory (inhibitor) subunit
12B isoform a [Homo sapiens]
Length = 982
Score = 27.7 bits (60), Expect = 2.2
Identities = 14/40 (35%), Positives = 22/40 (55%)
Query: 42 RGRLRRPRQSRFKTQPVTFDEIQEVEEEGVSPMEEEKAKK 81
+ R R+ RQ+R TQ VT ++QE E E +A++
Sbjct: 633 KARSRQARQTRRSTQGVTLTDLQEAERTFSRSRAERQAQE 672
>gi|187761317 tet oncogene family member 2 isoform a [Homo sapiens]
Length = 2002
Score = 27.3 bits (59), Expect = 2.9
Identities = 14/49 (28%), Positives = 26/49 (53%), Gaps = 3/49 (6%)
Query: 62 EIQEVEEEGVSPMEEEKAKKSFLQSLECLRRSTQSLSLQREQLSSCKLR 110
++ +V+E G +EEK + +Q L RR + L+ E + +C+ R
Sbjct: 1422 KVSDVDEFGSVEAQEEKKRSGAIQVLSSFRRKVRMLA---EPVKTCRQR 1467
>gi|157671951 solute carrier family 4, anion exchanger, member 3
isoform 1 [Homo sapiens]
Length = 1232
Score = 27.3 bits (59), Expect = 2.9
Identities = 14/57 (24%), Positives = 29/57 (50%)
Query: 25 LADEFPQPVRPAKLPKGRGRLRRPRQSRFKTQPVTFDEIQEVEEEGVSPMEEEKAKK 81
L+ P P + +LP R R ++ + KT + ++EEG + ++EE+ ++
Sbjct: 85 LSARLPPPHKLRRLPPTSARHTRRKRKKEKTSAPPSEGTPPIQEEGGAGVDEEEEEE 141
>gi|63999048 syntaxin binding protein 4 [Homo sapiens]
Length = 553
Score = 27.3 bits (59), Expect = 2.9
Identities = 11/44 (25%), Positives = 25/44 (56%)
Query: 61 DEIQEVEEEGVSPMEEEKAKKSFLQSLECLRRSTQSLSLQREQL 104
+E+Q V++E + +EE +A +S + E +R + + E++
Sbjct: 330 EELQNVKQEAKAVVEETRALRSRIHLAEAAQRQAHGMEMDYEEV 373
>gi|157671953 solute carrier family 4, anion exchanger, member 3
isoform 2 [Homo sapiens]
Length = 1259
Score = 27.3 bits (59), Expect = 2.9
Identities = 14/57 (24%), Positives = 29/57 (50%)
Query: 25 LADEFPQPVRPAKLPKGRGRLRRPRQSRFKTQPVTFDEIQEVEEEGVSPMEEEKAKK 81
L+ P P + +LP R R ++ + KT + ++EEG + ++EE+ ++
Sbjct: 85 LSARLPPPHKLRRLPPTSARHTRRKRKKEKTSAPPSEGTPPIQEEGGAGVDEEEEEE 141
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.315 0.129 0.364
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,936,423
Number of Sequences: 37866
Number of extensions: 228963
Number of successful extensions: 1250
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 33
Number of HSP's successfully gapped in prelim test: 55
Number of HSP's that attempted gapping in prelim test: 1183
Number of HSP's gapped (non-prelim): 125
length of query: 122
length of database: 18,247,518
effective HSP length: 89
effective length of query: 33
effective length of database: 14,877,444
effective search space: 490955652
effective search space used: 490955652
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 55 (25.8 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.