Guide to the Human Genome
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Name: C3orf16 Sequence: fasta or formatted (544aa) NCBI GI: 222352168
Description:

hypothetical protein LOC389161

Referenced in:

Ankyrin Family
Ubiquitin and Related Protein Modifications

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             7.7         42           3
 C cysteine            2.8         15           1
 D aspartate           4.0         22           1
 E glutamate           4.8         26           2
 F phenylalanine       4.4         24           2
 G glycine             4.6         25           2
 H histidine           2.8         15           1
 I isoleucine          4.4         24           1
 K lysine              9.2         50           2
 L leucine            11.2         61           2
 M methionine          2.0         11           1
 N asparagine          2.2         12           1
 P proline             4.8         26           2
 Q glutamine           4.4         24           3
 R arginine            3.9         21           2
 S serine              8.6         47           2
 T threonine           5.7         31           2
 V valine              7.2         39           2
 W tryptophan          1.8         10           1
 Y tyrosine            3.5         19           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   hypothetical protein LOC389161 
ANKRD60               0.020   PREDICTED: ankyrin repeat domain 60 
ANKRD60               0.018   PREDICTED: ankyrin repeat domain 60 
ANKRD60               0.018   PREDICTED: ankyrin repeat domain 60 
ANKRD28               0.016   ankyrin repeat domain 28 
ANKRD23               0.015   diabetes related ankyrin repeat protein 
HACE1                 0.014   HECT domain and ankyrin repeat containing, E3 ubiqu...
UBC                   0.014   ubiquitin C 
ANKRD44               0.013   ankyrin repeat domain 44 
UBB                   0.013   ubiquitin B precursor 
LOC100287718          0.012   hypothetical protein LOC100287718 
LOC100293913          0.012   PREDICTED: similar to ankyrin repeat domain 2 [Homo...
EHMT1                 0.011   euchromatic histone-lysine N-methyltransferase 1 is...
FANK1                 0.011   fibronectin type III and ankyrin repeat domains 1 [...
ANKRD52               0.011   ankyrin repeat domain 52 
EHMT2                 0.010   euchromatic histone-lysine N-methyltransferase 2 is...
EHMT2                 0.010   euchromatic histone-lysine N-methyltransferase 2 is...
OSBPL1A               0.009   oxysterol-binding protein-like 1A isoform B 
ESPN                  0.009   espin 
ANK2                  0.009   ankyrin 2 isoform 3 
ANK2                  0.009   ankyrin 2 isoform 2 
ANK2                  0.009   ankyrin 2 isoform 1 
ANK1                  0.009   ankyrin 1 isoform 9 
ANK1                  0.009   ankyrin 1 isoform 1 
ANK1                  0.009   ankyrin 1 isoform 3 
ANK1                  0.009   ankyrin 1 isoform 2 
ANK1                  0.009   ankyrin 1 isoform 4 
ANKRD27               0.009   ankyrin repeat domain 27 (VPS9 domain) 
ANKK1                 0.008   ankyrin repeat and kinase domain containing 1 
ANKRD17               0.007   ankyrin repeat domain protein 17 isoform a 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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