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Search of human proteins with 222144277
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|222144277 nucleoporin 62kDa C-terminal like [Homo sapiens]
(184 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|222144277 nucleoporin 62kDa C-terminal like [Homo sapiens] 362 e-101
gi|24497609 nucleoporin 62kDa [Homo sapiens] 173 7e-44
gi|24497607 nucleoporin 62kDa [Homo sapiens] 173 7e-44
gi|24497605 nucleoporin 62kDa [Homo sapiens] 173 7e-44
gi|24497603 nucleoporin 62kDa [Homo sapiens] 173 7e-44
gi|169167859 PREDICTED: hypothetical protein, partial [Homo sapi... 44 1e-04
gi|169214154 PREDICTED: hypothetical protein [Homo sapiens] 42 3e-04
gi|113417084 PREDICTED: hypothetical protein [Homo sapiens] 42 3e-04
gi|169213511 PREDICTED: hypothetical protein [Homo sapiens] 42 3e-04
gi|239758058 PREDICTED: similar to mucin, partial [Homo sapiens] 39 0.003
gi|239749510 PREDICTED: hypothetical protein, partial [Homo sapi... 38 0.006
gi|239743291 PREDICTED: mucin 3A, intestinal [Homo sapiens] 37 0.007
gi|239508973 PREDICTED: similar to Mucin-3A [Homo sapiens] 37 0.007
gi|161019170 mucin 5AC [Homo sapiens] 36 0.021
gi|153945878 mucin 5, subtype B, tracheobronchial [Homo sapiens] 36 0.021
gi|91208418 transcription elongation regulator 1 isoform 2 [Homo... 35 0.048
gi|21327715 transcription elongation regulator 1 isoform 1 [Homo... 35 0.048
gi|239758038 PREDICTED: mucin 3A, cell surface associated, parti... 33 0.11
gi|169171850 PREDICTED: similar to intestinal mucin MUC3B [Homo ... 33 0.11
gi|34878904 synaptonemal complex protein 1 [Homo sapiens] 33 0.11
gi|32967601 ankyrin 3 isoform 1 [Homo sapiens] 33 0.11
gi|87162461 fragile X mental retardation 2 [Homo sapiens] 33 0.11
gi|67782365 keratin 7 [Homo sapiens] 33 0.14
gi|55770888 early endosome antigen 1, 162kD [Homo sapiens] 33 0.18
gi|197927452 dynein, axonemal, heavy chain 1 [Homo sapiens] 33 0.18
gi|154759259 spectrin, alpha, non-erythrocytic 1 (alpha-fodrin) ... 32 0.24
gi|194595509 spectrin, alpha, non-erythrocytic 1 (alpha-fodrin) ... 32 0.24
gi|169202626 PREDICTED: similar to mucin 5, partial [Homo sapiens] 32 0.24
gi|239757995 PREDICTED: similar to hCG1747327, partial [Homo sap... 32 0.31
gi|239754269 PREDICTED: hypothetical protein [Homo sapiens] 32 0.40
>gi|222144277 nucleoporin 62kDa C-terminal like [Homo sapiens]
Length = 184
Score = 362 bits (930), Expect = e-101
Identities = 184/184 (100%), Positives = 184/184 (100%)
Query: 1 MQFTSISNSLTSTAAIGLSFTTSTTTTATFTTNTTTTITSGFTVNQNQLLSRGFENLVPY 60
MQFTSISNSLTSTAAIGLSFTTSTTTTATFTTNTTTTITSGFTVNQNQLLSRGFENLVPY
Sbjct: 1 MQFTSISNSLTSTAAIGLSFTTSTTTTATFTTNTTTTITSGFTVNQNQLLSRGFENLVPY 60
Query: 61 TSTVSVVATPVMTYGHLEGLINEWNLELEDQEKYFLLQATQVNAWDHTLIENGEMIRILH 120
TSTVSVVATPVMTYGHLEGLINEWNLELEDQEKYFLLQATQVNAWDHTLIENGEMIRILH
Sbjct: 61 TSTVSVVATPVMTYGHLEGLINEWNLELEDQEKYFLLQATQVNAWDHTLIENGEMIRILH 120
Query: 121 GEVNKVKLDQKRLEQELDFILSQQQELEFLLTYLEESTRDQSGLHYLQDADEEHVEISTR 180
GEVNKVKLDQKRLEQELDFILSQQQELEFLLTYLEESTRDQSGLHYLQDADEEHVEISTR
Sbjct: 121 GEVNKVKLDQKRLEQELDFILSQQQELEFLLTYLEESTRDQSGLHYLQDADEEHVEISTR 180
Query: 181 SAEF 184
SAEF
Sbjct: 181 SAEF 184
>gi|24497609 nucleoporin 62kDa [Homo sapiens]
Length = 522
Score = 173 bits (439), Expect = 7e-44
Identities = 100/172 (58%), Positives = 117/172 (68%), Gaps = 17/172 (9%)
Query: 14 AAIGLSFTTSTTTTATFTTNTTTTITSGFTVNQNQLLSRGFENLVPYTSTVSVVATP--- 70
AA G S TTST TAT TT T+++ T+GF +N L G +P + +V A P
Sbjct: 263 AASGTSTTTSTAATATATT-TSSSSTTGFALNLKPLAPAG----IPSNTAAAVTAPPGPG 317
Query: 71 ---------VMTYGHLEGLINEWNLELEDQEKYFLLQATQVNAWDHTLIENGEMIRILHG 121
MTY LE LIN+W+LELEDQE++FL QATQVNAWD TLIENGE I LH
Sbjct: 318 AAAGAAASSAMTYAQLESLINKWSLELEDQERHFLQQATQVNAWDRTLIENGEKITSLHR 377
Query: 122 EVNKVKLDQKRLEQELDFILSQQQELEFLLTYLEESTRDQSGLHYLQDADEE 173
EV KVKLDQKRL+QELDFILSQQ+ELE LL+ LEE ++QSG YLQ ADEE
Sbjct: 378 EVEKVKLDQKRLDQELDFILSQQKELEDLLSPLEELVKEQSGTIYLQHADEE 429
Score = 27.3 bits (59), Expect = 7.6
Identities = 21/69 (30%), Positives = 32/69 (46%), Gaps = 3/69 (4%)
Query: 5 SISNSLTS---TAAIGLSFTTSTTTTATFTTNTTTTITSGFTVNQNQLLSRGFENLVPYT 61
+IS+++TS TA G F STT+ A TT+ + T G T + N T
Sbjct: 124 AISSTVTSSQGTAPTGFVFGPSTTSVAPATTSGGFSFTGGSTAQPSGFNIGSAGNSAQPT 183
Query: 62 STVSVVATP 70
+ ++ TP
Sbjct: 184 APATLPFTP 192
>gi|24497607 nucleoporin 62kDa [Homo sapiens]
Length = 522
Score = 173 bits (439), Expect = 7e-44
Identities = 100/172 (58%), Positives = 117/172 (68%), Gaps = 17/172 (9%)
Query: 14 AAIGLSFTTSTTTTATFTTNTTTTITSGFTVNQNQLLSRGFENLVPYTSTVSVVATP--- 70
AA G S TTST TAT TT T+++ T+GF +N L G +P + +V A P
Sbjct: 263 AASGTSTTTSTAATATATT-TSSSSTTGFALNLKPLAPAG----IPSNTAAAVTAPPGPG 317
Query: 71 ---------VMTYGHLEGLINEWNLELEDQEKYFLLQATQVNAWDHTLIENGEMIRILHG 121
MTY LE LIN+W+LELEDQE++FL QATQVNAWD TLIENGE I LH
Sbjct: 318 AAAGAAASSAMTYAQLESLINKWSLELEDQERHFLQQATQVNAWDRTLIENGEKITSLHR 377
Query: 122 EVNKVKLDQKRLEQELDFILSQQQELEFLLTYLEESTRDQSGLHYLQDADEE 173
EV KVKLDQKRL+QELDFILSQQ+ELE LL+ LEE ++QSG YLQ ADEE
Sbjct: 378 EVEKVKLDQKRLDQELDFILSQQKELEDLLSPLEELVKEQSGTIYLQHADEE 429
Score = 27.3 bits (59), Expect = 7.6
Identities = 21/69 (30%), Positives = 32/69 (46%), Gaps = 3/69 (4%)
Query: 5 SISNSLTS---TAAIGLSFTTSTTTTATFTTNTTTTITSGFTVNQNQLLSRGFENLVPYT 61
+IS+++TS TA G F STT+ A TT+ + T G T + N T
Sbjct: 124 AISSTVTSSQGTAPTGFVFGPSTTSVAPATTSGGFSFTGGSTAQPSGFNIGSAGNSAQPT 183
Query: 62 STVSVVATP 70
+ ++ TP
Sbjct: 184 APATLPFTP 192
>gi|24497605 nucleoporin 62kDa [Homo sapiens]
Length = 522
Score = 173 bits (439), Expect = 7e-44
Identities = 100/172 (58%), Positives = 117/172 (68%), Gaps = 17/172 (9%)
Query: 14 AAIGLSFTTSTTTTATFTTNTTTTITSGFTVNQNQLLSRGFENLVPYTSTVSVVATP--- 70
AA G S TTST TAT TT T+++ T+GF +N L G +P + +V A P
Sbjct: 263 AASGTSTTTSTAATATATT-TSSSSTTGFALNLKPLAPAG----IPSNTAAAVTAPPGPG 317
Query: 71 ---------VMTYGHLEGLINEWNLELEDQEKYFLLQATQVNAWDHTLIENGEMIRILHG 121
MTY LE LIN+W+LELEDQE++FL QATQVNAWD TLIENGE I LH
Sbjct: 318 AAAGAAASSAMTYAQLESLINKWSLELEDQERHFLQQATQVNAWDRTLIENGEKITSLHR 377
Query: 122 EVNKVKLDQKRLEQELDFILSQQQELEFLLTYLEESTRDQSGLHYLQDADEE 173
EV KVKLDQKRL+QELDFILSQQ+ELE LL+ LEE ++QSG YLQ ADEE
Sbjct: 378 EVEKVKLDQKRLDQELDFILSQQKELEDLLSPLEELVKEQSGTIYLQHADEE 429
Score = 27.3 bits (59), Expect = 7.6
Identities = 21/69 (30%), Positives = 32/69 (46%), Gaps = 3/69 (4%)
Query: 5 SISNSLTS---TAAIGLSFTTSTTTTATFTTNTTTTITSGFTVNQNQLLSRGFENLVPYT 61
+IS+++TS TA G F STT+ A TT+ + T G T + N T
Sbjct: 124 AISSTVTSSQGTAPTGFVFGPSTTSVAPATTSGGFSFTGGSTAQPSGFNIGSAGNSAQPT 183
Query: 62 STVSVVATP 70
+ ++ TP
Sbjct: 184 APATLPFTP 192
>gi|24497603 nucleoporin 62kDa [Homo sapiens]
Length = 522
Score = 173 bits (439), Expect = 7e-44
Identities = 100/172 (58%), Positives = 117/172 (68%), Gaps = 17/172 (9%)
Query: 14 AAIGLSFTTSTTTTATFTTNTTTTITSGFTVNQNQLLSRGFENLVPYTSTVSVVATP--- 70
AA G S TTST TAT TT T+++ T+GF +N L G +P + +V A P
Sbjct: 263 AASGTSTTTSTAATATATT-TSSSSTTGFALNLKPLAPAG----IPSNTAAAVTAPPGPG 317
Query: 71 ---------VMTYGHLEGLINEWNLELEDQEKYFLLQATQVNAWDHTLIENGEMIRILHG 121
MTY LE LIN+W+LELEDQE++FL QATQVNAWD TLIENGE I LH
Sbjct: 318 AAAGAAASSAMTYAQLESLINKWSLELEDQERHFLQQATQVNAWDRTLIENGEKITSLHR 377
Query: 122 EVNKVKLDQKRLEQELDFILSQQQELEFLLTYLEESTRDQSGLHYLQDADEE 173
EV KVKLDQKRL+QELDFILSQQ+ELE LL+ LEE ++QSG YLQ ADEE
Sbjct: 378 EVEKVKLDQKRLDQELDFILSQQKELEDLLSPLEELVKEQSGTIYLQHADEE 429
Score = 27.3 bits (59), Expect = 7.6
Identities = 21/69 (30%), Positives = 32/69 (46%), Gaps = 3/69 (4%)
Query: 5 SISNSLTS---TAAIGLSFTTSTTTTATFTTNTTTTITSGFTVNQNQLLSRGFENLVPYT 61
+IS+++TS TA G F STT+ A TT+ + T G T + N T
Sbjct: 124 AISSTVTSSQGTAPTGFVFGPSTTSVAPATTSGGFSFTGGSTAQPSGFNIGSAGNSAQPT 183
Query: 62 STVSVVATP 70
+ ++ TP
Sbjct: 184 APATLPFTP 192
>gi|169167859 PREDICTED: hypothetical protein, partial [Homo
sapiens]
Length = 214
Score = 43.5 bits (101), Expect = 1e-04
Identities = 25/73 (34%), Positives = 39/73 (53%), Gaps = 3/73 (4%)
Query: 4 TSISNSLTSTAAIGLS---FTTSTTTTATFTTNTTTTITSGFTVNQNQLLSRGFENLVPY 60
T+I+ + T+T I + TT+TTTT T TT TTTTIT+ T+ + +
Sbjct: 66 TTITTTTTTTTTITTTTTTITTTTTTTITTTTTTTTTITTTTTITTTTITTTTTTTTTTT 125
Query: 61 TSTVSVVATPVMT 73
T+T++ T +T
Sbjct: 126 TTTITTTITTTIT 138
Score = 39.7 bits (91), Expect = 0.001
Identities = 20/66 (30%), Positives = 34/66 (51%)
Query: 4 TSISNSLTSTAAIGLSFTTSTTTTATFTTNTTTTITSGFTVNQNQLLSRGFENLVPYTST 63
T+ + ++T+T I + T+TTTT T TT TT T T T+ + + + T+T
Sbjct: 97 TTTTTTITTTTTITTTTITTTTTTTTTTTTTTITTTITTTITTTTITTTTTTTTITTTTT 156
Query: 64 VSVVAT 69
++ T
Sbjct: 157 ITTTTT 162
Score = 39.3 bits (90), Expect = 0.002
Identities = 21/66 (31%), Positives = 33/66 (50%)
Query: 4 TSISNSLTSTAAIGLSFTTSTTTTATFTTNTTTTITSGFTVNQNQLLSRGFENLVPYTST 63
T+I+ + T+T + T+TTTT T TT TTTTIT+ + + T+T
Sbjct: 140 TTITTTTTTTTITTTTTITTTTTTTTITTTTTTTITTSTITTTTTSTTITTTTTITTTTT 199
Query: 64 VSVVAT 69
++ T
Sbjct: 200 ITTTTT 205
Score = 38.9 bits (89), Expect = 0.003
Identities = 22/70 (31%), Positives = 36/70 (51%), Gaps = 2/70 (2%)
Query: 4 TSISNSLTSTAAIGLSFTTSTTTTATFTTNTTTTITSGFTVNQNQLLSRGFENLVPYTST 63
T+I+ + T+T I + T +TTT T TT TTTT T+ T ++ + T+T
Sbjct: 91 TTITTTTTTTTTITTTTTITTTTITTTTTTTTTTTTTTITTTITTTITT--TTITTTTTT 148
Query: 64 VSVVATPVMT 73
++ T +T
Sbjct: 149 TTITTTTTIT 158
Score = 38.1 bits (87), Expect = 0.004
Identities = 20/70 (28%), Positives = 33/70 (47%)
Query: 4 TSISNSLTSTAAIGLSFTTSTTTTATFTTNTTTTITSGFTVNQNQLLSRGFENLVPYTST 63
T+ + ++T+T ++ TT+TTTT T TT TTT + T + + T T
Sbjct: 79 TTTTTTITTTTTTTITTTTTTTTTITTTTTITTTTITTTTTTTTTTTTTTITTTITTTIT 138
Query: 64 VSVVATPVMT 73
+ + T T
Sbjct: 139 TTTITTTTTT 148
Score = 38.1 bits (87), Expect = 0.004
Identities = 20/70 (28%), Positives = 33/70 (47%)
Query: 4 TSISNSLTSTAAIGLSFTTSTTTTATFTTNTTTTITSGFTVNQNQLLSRGFENLVPYTST 63
T+I+ + T+T + TT+ TTT T TT T TT T+ T ++ + T+
Sbjct: 83 TTITTTTTTTITTTTTTTTTITTTTTITTTTITTTTTTTTTTTTTTITTTITTTITTTTI 142
Query: 64 VSVVATPVMT 73
+ T +T
Sbjct: 143 TTTTTTTTIT 152
Score = 37.4 bits (85), Expect = 0.007
Identities = 22/70 (31%), Positives = 31/70 (44%)
Query: 4 TSISNSLTSTAAIGLSFTTSTTTTATFTTNTTTTITSGFTVNQNQLLSRGFENLVPYTST 63
T+ + + T+ + TT TTTT T TT TTTTIT+ T + T+T
Sbjct: 59 TTTTTTTTTITTTTTTTTTITTTTTTITTTTTTTITTTTTTTTTITTTTTITTTTITTTT 118
Query: 64 VSVVATPVMT 73
+ T T
Sbjct: 119 TTTTTTTTTT 128
Score = 37.4 bits (85), Expect = 0.007
Identities = 21/70 (30%), Positives = 32/70 (45%)
Query: 4 TSISNSLTSTAAIGLSFTTSTTTTATFTTNTTTTITSGFTVNQNQLLSRGFENLVPYTST 63
T+ + + T T I + TT+T TT T TT TTT T T + + + T T
Sbjct: 121 TTTTTTTTITTTITTTITTTTITTTTTTTTITTTTTITTTTTTTTITTTTTTTITTSTIT 180
Query: 64 VSVVATPVMT 73
+ +T + T
Sbjct: 181 TTTTSTTITT 190
Score = 36.6 bits (83), Expect = 0.013
Identities = 21/67 (31%), Positives = 34/67 (50%), Gaps = 1/67 (1%)
Query: 3 FTSISNSLTSTAAIGLSFTTSTTTTATFTTNTTTTITSGFTVNQNQLLSRGFENLVPYTS 62
+ + N+ S+ A+ L TT+TTTT T T TTTT T+ T + + + T+
Sbjct: 40 YAPLPNTAGSSIALLLPTTTTTTTTTT-TITTTTTTTTTITTTTTTITTTTTTTITTTTT 98
Query: 63 TVSVVAT 69
T + + T
Sbjct: 99 TTTTITT 105
Score = 36.2 bits (82), Expect = 0.016
Identities = 20/70 (28%), Positives = 32/70 (45%)
Query: 4 TSISNSLTSTAAIGLSFTTSTTTTATFTTNTTTTITSGFTVNQNQLLSRGFENLVPYTST 63
T+ + ++T+T + TT+TT T T T TTTT T+ T ++ T+T
Sbjct: 87 TTTTTTITTTTTTTTTITTTTTITTTTITTTTTTTTTTTTTTITTTITTTITTTTITTTT 146
Query: 64 VSVVATPVMT 73
+ T T
Sbjct: 147 TTTTITTTTT 156
Score = 36.2 bits (82), Expect = 0.016
Identities = 20/70 (28%), Positives = 36/70 (51%), Gaps = 1/70 (1%)
Query: 4 TSISNSLTSTAAIGLSFTTSTTTTATFTTNTTTTITSGFTVNQNQLLSRGFENLVPYTST 63
T+I+ ++T+T + TT+TTTT TT T TT T+ T+ + + T++
Sbjct: 127 TTITTTITTTITT-TTITTTTTTTTITTTTTITTTTTTTTITTTTTTTITTSTITTTTTS 185
Query: 64 VSVVATPVMT 73
++ T +T
Sbjct: 186 TTITTTTTIT 195
Score = 36.2 bits (82), Expect = 0.016
Identities = 21/73 (28%), Positives = 37/73 (50%), Gaps = 3/73 (4%)
Query: 4 TSISNSLTSTAAIGLSFTTSTTTT---ATFTTNTTTTITSGFTVNQNQLLSRGFENLVPY 60
T+I+ ++T+T + TT+ TTT T TT TT T T+ T+ + + + +
Sbjct: 131 TTITTTITTTTITTTTTTTTITTTTTITTTTTTTTITTTTTTTITTSTITTTTTSTTITT 190
Query: 61 TSTVSVVATPVMT 73
T+T++ T T
Sbjct: 191 TTTITTTTTITTT 203
Score = 35.4 bits (80), Expect = 0.028
Identities = 23/70 (32%), Positives = 33/70 (47%), Gaps = 2/70 (2%)
Query: 4 TSISNSLTSTAAIGLSFTTSTTTTATFTTNTTTTITSGFTVNQNQLLSRGFENLVPYTST 63
+SI+ L +T + TT TTTT T TT TTTT T T ++ T+T
Sbjct: 49 SSIALLLPTTTTTTTTTTTITTTTTTTTTITTTTTT--ITTTTTTTITTTTTTTTTITTT 106
Query: 64 VSVVATPVMT 73
++ T + T
Sbjct: 107 TTITTTTITT 116
Score = 35.0 bits (79), Expect = 0.036
Identities = 19/70 (27%), Positives = 32/70 (45%)
Query: 4 TSISNSLTSTAAIGLSFTTSTTTTATFTTNTTTTITSGFTVNQNQLLSRGFENLVPYTST 63
T+ + T+T + T +TT T T TT T TT T+ T+ ++ T+T
Sbjct: 111 TTTITTTTTTTTTTTTTTITTTITTTITTTTITTTTTTTTITTTTTITTTTTTTTITTTT 170
Query: 64 VSVVATPVMT 73
+ + T +T
Sbjct: 171 TTTITTSTIT 180
Score = 34.7 bits (78), Expect = 0.048
Identities = 20/70 (28%), Positives = 31/70 (44%)
Query: 4 TSISNSLTSTAAIGLSFTTSTTTTATFTTNTTTTITSGFTVNQNQLLSRGFENLVPYTST 63
T+ + T+T + T +TTTT T T TTTTIT+ + + T T
Sbjct: 75 TTTITTTTTTITTTTTTTITTTTTTTTTITTTTTITTTTITTTTTTTTTTTTTTITTTIT 134
Query: 64 VSVVATPVMT 73
++ T + T
Sbjct: 135 TTITTTTITT 144
Score = 33.5 bits (75), Expect = 0.11
Identities = 20/70 (28%), Positives = 30/70 (42%)
Query: 4 TSISNSLTSTAAIGLSFTTSTTTTATFTTNTTTTITSGFTVNQNQLLSRGFENLVPYTST 63
T+ + T+T + TT+TTTT TT TTT T+ T + T+T
Sbjct: 104 TTTTTITTTTITTTTTTTTTTTTTTITTTITTTITTTTITTTTTTTTITTTTTITTTTTT 163
Query: 64 VSVVATPVMT 73
++ T T
Sbjct: 164 TTITTTTTTT 173
Score = 33.5 bits (75), Expect = 0.11
Identities = 16/37 (43%), Positives = 22/37 (59%)
Query: 4 TSISNSLTSTAAIGLSFTTSTTTTATFTTNTTTTITS 40
T+I+ S +T + TT+TT T T T TTTT T+
Sbjct: 172 TTITTSTITTTTTSTTITTTTTITTTTTITTTTTTTT 208
Score = 33.5 bits (75), Expect = 0.11
Identities = 18/40 (45%), Positives = 25/40 (62%)
Query: 4 TSISNSLTSTAAIGLSFTTSTTTTATFTTNTTTTITSGFT 43
T+ + + T+T+ + TT TTTT TT TTTTIT+ T
Sbjct: 175 TTSTITTTTTSTTITTTTTITTTTTITTTTTTTTITTTIT 214
Score = 33.1 bits (74), Expect = 0.14
Identities = 22/71 (30%), Positives = 35/71 (49%), Gaps = 3/71 (4%)
Query: 4 TSISNSLTSTAAIGLSFTTSTTTTATFTTN-TTTTITSGFTVNQNQLLSRGFENLVPYTS 62
T+I+ + +T + TT+TT T T TT TTTTIT+ T + + T+
Sbjct: 107 TTITTTTITTTTTTTTTTTTTTITTTITTTITTTTITT--TTTTTTITTTTTITTTTTTT 164
Query: 63 TVSVVATPVMT 73
T++ T +T
Sbjct: 165 TITTTTTTTIT 175
Score = 33.1 bits (74), Expect = 0.14
Identities = 21/70 (30%), Positives = 30/70 (42%)
Query: 4 TSISNSLTSTAAIGLSFTTSTTTTATFTTNTTTTITSGFTVNQNQLLSRGFENLVPYTST 63
T+ + + T+T + TT TTTT T T TTTT T + S T+T
Sbjct: 138 TTTTITTTTTTTTITTTTTITTTTTTTTITTTTTTTITTSTITTTTTSTTITTTTTITTT 197
Query: 64 VSVVATPVMT 73
++ T T
Sbjct: 198 TTITTTTTTT 207
Score = 32.7 bits (73), Expect = 0.18
Identities = 21/66 (31%), Positives = 30/66 (45%), Gaps = 1/66 (1%)
Query: 4 TSISNSLTSTAAIGLSFTTSTTTTATFTTNTTTTITSGFTVNQNQLLSRGFENLVPYTST 63
T+ + + T+T I + TT+ TTT T TT TTTT + T + T T
Sbjct: 117 TTTTTTTTTTTTITTTITTTITTT-TITTTTTTTTITTTTTITTTTTTTTITTTTTTTIT 175
Query: 64 VSVVAT 69
S + T
Sbjct: 176 TSTITT 181
Score = 32.7 bits (73), Expect = 0.18
Identities = 21/70 (30%), Positives = 34/70 (48%), Gaps = 3/70 (4%)
Query: 4 TSISNSLTSTAAIGLSFTTSTTTTATFTTNTTTTITSGFTVNQNQLLSRGFENLVPYTST 63
T+ + ++T+T I TT+TTTT T TT TT T ++ T + ++ T T
Sbjct: 145 TTTTTTITTTTTIT---TTTTTTTITTTTTTTITTSTITTTTTSTTITTTTTITTTTTIT 201
Query: 64 VSVVATPVMT 73
+ T + T
Sbjct: 202 TTTTTTTITT 211
Score = 32.3 bits (72), Expect = 0.24
Identities = 19/68 (27%), Positives = 27/68 (39%)
Query: 6 ISNSLTSTAAIGLSFTTSTTTTATFTTNTTTTITSGFTVNQNQLLSRGFENLVPYTSTVS 65
+ + T+T TT+TTTT TT TT T T+ T+ + T+T
Sbjct: 55 LPTTTTTTTTTTTITTTTTTTTTITTTTTTITTTTTTTITTTTTTTTTITTTTTITTTTI 114
Query: 66 VVATPVMT 73
T T
Sbjct: 115 TTTTTTTT 122
>gi|169214154 PREDICTED: hypothetical protein [Homo sapiens]
Length = 737
Score = 42.0 bits (97), Expect = 3e-04
Identities = 29/71 (40%), Positives = 39/71 (54%), Gaps = 4/71 (5%)
Query: 4 TSISNSLTSTAAIGLSFT-TSTTTTATFTTNTTTTITSGFTVNQNQLLSRGFENLVPYTS 62
TS S S+TST++I S T TST+TT+T + +TT+T+TS T S +TS
Sbjct: 157 TSTSISITSTSSISSSITSTSTSTTSTSSNSTTSTVTSTSTSTST---STSTSTSSTFTS 213
Query: 63 TVSVVATPVMT 73
T S T T
Sbjct: 214 TTSTSTTSTST 224
Score = 38.5 bits (88), Expect = 0.003
Identities = 22/66 (33%), Positives = 36/66 (54%), Gaps = 3/66 (4%)
Query: 7 SNSLTSTA---AIGLSFTTSTTTTATFTTNTTTTITSGFTVNQNQLLSRGFENLVPYTST 63
SNS TST + S +TST+T++TFT+ T+T+ TS T + + + L P+
Sbjct: 185 SNSTTSTVTSTSTSTSTSTSTSTSSTFTSTTSTSTTSTSTTSTSTSATSSIRKLTPHQKQ 244
Query: 64 VSVVAT 69
+A+
Sbjct: 245 CGALAS 250
Score = 35.8 bits (81), Expect = 0.021
Identities = 26/75 (34%), Positives = 40/75 (53%), Gaps = 5/75 (6%)
Query: 4 TSISNSLTSTAAIGLSFTTSTTTTAT-----FTTNTTTTITSGFTVNQNQLLSRGFENLV 58
+S ++S ++++ I SFTTST+ T+T FTT+T TT TS + + + S
Sbjct: 119 SSTTSSTSTSSFITSSFTTSTSITSTSSTSSFTTSTATTSTSISITSTSSISSSITSTST 178
Query: 59 PYTSTVSVVATPVMT 73
TST S T +T
Sbjct: 179 STTSTSSNSTTSTVT 193
Score = 35.0 bits (79), Expect = 0.036
Identities = 17/37 (45%), Positives = 27/37 (72%)
Query: 4 TSISNSLTSTAAIGLSFTTSTTTTATFTTNTTTTITS 40
TS S S +++ + + TTST+TT+T TT+T+T+ TS
Sbjct: 197 TSTSTSTSTSTSSTFTSTTSTSTTSTSTTSTSTSATS 233
Score = 34.3 bits (77), Expect = 0.062
Identities = 25/68 (36%), Positives = 37/68 (54%), Gaps = 5/68 (7%)
Query: 7 SNSLTSTAAIGLSFTTSTTTTAT-FTTNTTTTITSGFTVNQNQLLSRGFENLVPYTSTVS 65
S S+TST++ SFTTST TT+T + +T++I+S T S + TSTV+
Sbjct: 138 STSITSTSSTS-SFTTSTATTSTSISITSTSSISSSITSTSTSTTSTSSNST---TSTVT 193
Query: 66 VVATPVMT 73
+T T
Sbjct: 194 STSTSTST 201
Score = 33.1 bits (74), Expect = 0.14
Identities = 21/67 (31%), Positives = 35/67 (52%)
Query: 7 SNSLTSTAAIGLSFTTSTTTTATFTTNTTTTITSGFTVNQNQLLSRGFENLVPYTSTVSV 66
SNS TS+++ S +TS+ T++FTT+T+ T TS + + + TS++S
Sbjct: 112 SNSSTSSSSTTSSTSTSSFITSSFTTSTSITSTSSTSSFTTSTATTSTSISITSTSSISS 171
Query: 67 VATPVMT 73
T T
Sbjct: 172 SITSTST 178
Score = 30.8 bits (68), Expect = 0.69
Identities = 20/67 (29%), Positives = 37/67 (55%), Gaps = 3/67 (4%)
Query: 10 LTSTAAIGLSFTTSTTTTATFTTN---TTTTITSGFTVNQNQLLSRGFENLVPYTSTVSV 66
+TS ++ S TTS+T+T++F T+ T+T+ITS + + + + TST S+
Sbjct: 110 ITSNSSTSSSSTTSSTSTSSFITSSFTTSTSITSTSSTSSFTTSTATTSTSISITSTSSI 169
Query: 67 VATPVMT 73
++ T
Sbjct: 170 SSSITST 176
>gi|113417084 PREDICTED: hypothetical protein [Homo sapiens]
Length = 194
Score = 42.0 bits (97), Expect = 3e-04
Identities = 22/70 (31%), Positives = 36/70 (51%)
Query: 4 TSISNSLTSTAAIGLSFTTSTTTTATFTTNTTTTITSGFTVNQNQLLSRGFENLVPYTST 63
T+ ++T+T ++ TT+TTT T TT TTTTIT+ T ++ + T+T
Sbjct: 119 TTTITTITTTTTTTITTTTTTTTITTITTTTTTTITTTTTTITTTTITTTTTTTITTTTT 178
Query: 64 VSVVATPVMT 73
+ + T T
Sbjct: 179 TTTITTITTT 188
Score = 40.8 bits (94), Expect = 7e-04
Identities = 22/70 (31%), Positives = 34/70 (48%)
Query: 4 TSISNSLTSTAAIGLSFTTSTTTTATFTTNTTTTITSGFTVNQNQLLSRGFENLVPYTST 63
T+ + S T+ I + TT+TTTT T TT TTTT T+ T + + + T+T
Sbjct: 80 TTTTTSTTTITTITTTTTTTTTTTTTITTTTTTTTTTTTTTTITTITTTTTTTITTTTTT 139
Query: 64 VSVVATPVMT 73
++ T
Sbjct: 140 TTITTITTTT 149
Score = 38.1 bits (87), Expect = 0.004
Identities = 22/70 (31%), Positives = 34/70 (48%)
Query: 4 TSISNSLTSTAAIGLSFTTSTTTTATFTTNTTTTITSGFTVNQNQLLSRGFENLVPYTST 63
T+I+ + T+T I + +T TTTT T +T T TTIT+ T + T+T
Sbjct: 58 TTITTTTTTTTTITTTTSTITTTTTTTSTTTITTITTTTTTTTTTTTTITTTTTTTTTTT 117
Query: 64 VSVVATPVMT 73
+ T + T
Sbjct: 118 TTTTITTITT 127
Score = 37.7 bits (86), Expect = 0.006
Identities = 22/70 (31%), Positives = 30/70 (42%)
Query: 4 TSISNSLTSTAAIGLSFTTSTTTTATFTTNTTTTITSGFTVNQNQLLSRGFENLVPYTST 63
T+ S T+T + T+ TTT T TT TTTTIT+ T + + T+T
Sbjct: 72 TTTSTITTTTTTTSTTTITTITTTTTTTTTTTTTITTTTTTTTTTTTTTTITTITTTTTT 131
Query: 64 VSVVATPVMT 73
T T
Sbjct: 132 TITTTTTTTT 141
Score = 37.7 bits (86), Expect = 0.006
Identities = 21/70 (30%), Positives = 34/70 (48%)
Query: 4 TSISNSLTSTAAIGLSFTTSTTTTATFTTNTTTTITSGFTVNQNQLLSRGFENLVPYTST 63
T+ + + T+T ++ TT+TT T T TT T TTIT+ T + + T+T
Sbjct: 111 TTTTTTTTTTTITTITTTTTTTITTTTTTTTITTITTTTTTTITTTTTTITTTTITTTTT 170
Query: 64 VSVVATPVMT 73
++ T T
Sbjct: 171 TTITTTTTTT 180
Score = 37.0 bits (84), Expect = 0.010
Identities = 24/75 (32%), Positives = 38/75 (50%), Gaps = 6/75 (8%)
Query: 4 TSISNSLTSTAAIGLSFTTSTTTTAT-----FTTNTTTTITSGFTVNQNQLLSRGFENLV 58
T+ + + T+T I + TT+TTTT T TT TTTTIT+ T ++ +
Sbjct: 94 TTTTTTTTTTTTITTTTTTTTTTTTTTTITTITTTTTTTITTTTTTTTITTITTTTTTTI 153
Query: 59 PYTSTVSVVATPVMT 73
T+T ++ T + T
Sbjct: 154 T-TTTTTITTTTITT 167
Score = 36.6 bits (83), Expect = 0.013
Identities = 20/63 (31%), Positives = 29/63 (46%)
Query: 11 TSTAAIGLSFTTSTTTTATFTTNTTTTITSGFTVNQNQLLSRGFENLVPYTSTVSVVATP 70
T+ ++I L T+T TT T TT T TT TS T + + T+T + T
Sbjct: 46 TAGSSIALLLPTTTITTTTTTTTTITTTTSTITTTTTTTSTTTITTITTTTTTTTTTTTT 105
Query: 71 VMT 73
+ T
Sbjct: 106 ITT 108
Score = 36.6 bits (83), Expect = 0.013
Identities = 21/70 (30%), Positives = 34/70 (48%)
Query: 4 TSISNSLTSTAAIGLSFTTSTTTTATFTTNTTTTITSGFTVNQNQLLSRGFENLVPYTST 63
T+ + + T+T + TT+TTTT T T TTTT T+ T ++ + T+T
Sbjct: 79 TTTTTTSTTTITTITTTTTTTTTTTTTITTTTTTTTTTTTTTTITTITTTTTTTITTTTT 138
Query: 64 VSVVATPVMT 73
+ + T T
Sbjct: 139 TTTITTITTT 148
Score = 36.6 bits (83), Expect = 0.013
Identities = 22/70 (31%), Positives = 33/70 (47%), Gaps = 5/70 (7%)
Query: 4 TSISNSLTSTAAIGLSFTTSTTTTATFTTNTTTTITSGFTVNQNQLLSRGFENLVPYTST 63
T+I+ T+T + TT TTTT T TT TTTT + T ++ T+T
Sbjct: 87 TTITTITTTTTTTTTTTTTITTTTTTTTTTTTTTTITTITTTTTTTIT-----TTTTTTT 141
Query: 64 VSVVATPVMT 73
++ + T T
Sbjct: 142 ITTITTTTTT 151
Score = 36.2 bits (82), Expect = 0.016
Identities = 24/73 (32%), Positives = 35/73 (47%), Gaps = 2/73 (2%)
Query: 3 FTSISNSLTSTAAIGLSFTTSTTTTATFTTNTTT--TITSGFTVNQNQLLSRGFENLVPY 60
+ + N+ S+ A+ L TT TTTT T TT TTT TIT+ T ++
Sbjct: 40 YAPLPNTAGSSIALLLPTTTITTTTTTTTTITTTTSTITTTTTTTSTTTITTITTTTTTT 99
Query: 61 TSTVSVVATPVMT 73
T+T + + T T
Sbjct: 100 TTTTTTITTTTTT 112
Score = 36.2 bits (82), Expect = 0.016
Identities = 21/70 (30%), Positives = 33/70 (47%), Gaps = 5/70 (7%)
Query: 4 TSISNSLTSTAAIGLSFTTSTTTTATFTTNTTTTITSGFTVNQNQLLSRGFENLVPYTST 63
T+ ++++T+T TTSTTT T TT TTTT T+ T+ + T+
Sbjct: 71 TTTTSTITTTTT-----TTSTTTITTITTTTTTTTTTTTTITTTTTTTTTTTTTTTITTI 125
Query: 64 VSVVATPVMT 73
+ T + T
Sbjct: 126 TTTTTTTITT 135
Score = 36.2 bits (82), Expect = 0.016
Identities = 22/67 (32%), Positives = 34/67 (50%), Gaps = 1/67 (1%)
Query: 4 TSISNSLTSTAAIGLSFTTSTTT-TATFTTNTTTTITSGFTVNQNQLLSRGFENLVPYTS 62
T+I+ + T+T + TT+TTT T T TT T TTIT+ T + + T+
Sbjct: 90 TTITTTTTTTTTTTTTITTTTTTTTTTTTTTTITTITTTTTTTITTTTTTTTITTITTTT 149
Query: 63 TVSVVAT 69
T ++ T
Sbjct: 150 TTTITTT 156
Score = 35.8 bits (81), Expect = 0.021
Identities = 20/70 (28%), Positives = 32/70 (45%)
Query: 4 TSISNSLTSTAAIGLSFTTSTTTTATFTTNTTTTITSGFTVNQNQLLSRGFENLVPYTST 63
++I+ + T+T+ ++ T+TTTT T TT T TT T+ T T T
Sbjct: 75 STITTTTTTTSTTTITTITTTTTTTTTTTTTITTTTTTTTTTTTTTTITTITTTTTTTIT 134
Query: 64 VSVVATPVMT 73
+ T + T
Sbjct: 135 TTTTTTTITT 144
Score = 35.0 bits (79), Expect = 0.036
Identities = 20/70 (28%), Positives = 33/70 (47%), Gaps = 2/70 (2%)
Query: 4 TSISNSLTSTAAIGLSFTTSTTTTATFTTNTTTTITSGFTVNQNQLLSRGFENLVPYTST 63
T+ + + T+T T +TTTT T TT TTTT + T ++ + T+T
Sbjct: 107 TTTTTTTTTTTTTTTITTITTTTTTTITTTTTTTTITTITTTTTTTITTTTTTIT--TTT 164
Query: 64 VSVVATPVMT 73
++ T +T
Sbjct: 165 ITTTTTTTIT 174
Score = 34.3 bits (77), Expect = 0.062
Identities = 17/40 (42%), Positives = 25/40 (62%)
Query: 4 TSISNSLTSTAAIGLSFTTSTTTTATFTTNTTTTITSGFT 43
T+I+ + T+ ++ TT+TT T T TT T TTIT+ T
Sbjct: 151 TTITTTTTTITTTTITTTTTTTITTTTTTTTITTITTTTT 190
Score = 33.1 bits (74), Expect = 0.14
Identities = 22/74 (29%), Positives = 34/74 (45%), Gaps = 4/74 (5%)
Query: 4 TSISNSLTSTAAIGLSFTTSTTTT----ATFTTNTTTTITSGFTVNQNQLLSRGFENLVP 59
T+ + T+T+ I + TT++TTT T TT TTTT T+ T + +
Sbjct: 65 TTTTTITTTTSTITTTTTTTSTTTITTITTTTTTTTTTTTTITTTTTTTTTTTTTTTITT 124
Query: 60 YTSTVSVVATPVMT 73
T+T + T T
Sbjct: 125 ITTTTTTTITTTTT 138
Score = 32.7 bits (73), Expect = 0.18
Identities = 19/70 (27%), Positives = 30/70 (42%)
Query: 4 TSISNSLTSTAAIGLSFTTSTTTTATFTTNTTTTITSGFTVNQNQLLSRGFENLVPYTST 63
T+ + + T T TT+TTT+ T T TTT T+ T + T+T
Sbjct: 62 TTTTTTTTITTTTSTITTTTTTTSTTTITTITTTTTTTTTTTTTITTTTTTTTTTTTTTT 121
Query: 64 VSVVATPVMT 73
++ + T T
Sbjct: 122 ITTITTTTTT 131
Score = 32.3 bits (72), Expect = 0.24
Identities = 14/35 (40%), Positives = 22/35 (62%)
Query: 4 TSISNSLTSTAAIGLSFTTSTTTTATFTTNTTTTI 38
T + ++T+T ++ TT+TTT T TT TTT +
Sbjct: 159 TITTTTITTTTTTTITTTTTTTTITTITTTTTTCV 193
Score = 30.8 bits (68), Expect = 0.69
Identities = 17/38 (44%), Positives = 24/38 (63%), Gaps = 2/38 (5%)
Query: 4 TSISNSLTSTAAIGLSFTT--STTTTATFTTNTTTTIT 39
T+ + ++T+T + TT +TTTT T TT TTTT T
Sbjct: 154 TTTTTTITTTTITTTTTTTITTTTTTTTITTITTTTTT 191
Score = 27.3 bits (59), Expect = 7.6
Identities = 14/37 (37%), Positives = 20/37 (54%)
Query: 4 TSISNSLTSTAAIGLSFTTSTTTTATFTTNTTTTITS 40
T+ + T+T + T +TTTT T T TTT T+
Sbjct: 155 TTTTTITTTTITTTTTTTITTTTTTTTITTITTTTTT 191
>gi|169213511 PREDICTED: hypothetical protein [Homo sapiens]
Length = 737
Score = 42.0 bits (97), Expect = 3e-04
Identities = 29/71 (40%), Positives = 39/71 (54%), Gaps = 4/71 (5%)
Query: 4 TSISNSLTSTAAIGLSFT-TSTTTTATFTTNTTTTITSGFTVNQNQLLSRGFENLVPYTS 62
TS S S+TST++I S T TST+TT+T + +TT+T+TS T S +TS
Sbjct: 157 TSTSISITSTSSISSSITSTSTSTTSTSSNSTTSTVTSTSTSTST---STSTSTSSTFTS 213
Query: 63 TVSVVATPVMT 73
T S T T
Sbjct: 214 TTSTSTTSTST 224
Score = 38.5 bits (88), Expect = 0.003
Identities = 22/66 (33%), Positives = 36/66 (54%), Gaps = 3/66 (4%)
Query: 7 SNSLTSTA---AIGLSFTTSTTTTATFTTNTTTTITSGFTVNQNQLLSRGFENLVPYTST 63
SNS TST + S +TST+T++TFT+ T+T+ TS T + + + L P+
Sbjct: 185 SNSTTSTVTSTSTSTSTSTSTSTSSTFTSTTSTSTTSTSTTSTSTSATSSIRKLTPHQKQ 244
Query: 64 VSVVAT 69
+A+
Sbjct: 245 CGALAS 250
Score = 35.8 bits (81), Expect = 0.021
Identities = 26/75 (34%), Positives = 40/75 (53%), Gaps = 5/75 (6%)
Query: 4 TSISNSLTSTAAIGLSFTTSTTTTAT-----FTTNTTTTITSGFTVNQNQLLSRGFENLV 58
+S ++S ++++ I SFTTST+ T+T FTT+T TT TS + + + S
Sbjct: 119 SSTTSSTSTSSFITSSFTTSTSITSTSSTSSFTTSTATTSTSISITSTSSISSSITSTST 178
Query: 59 PYTSTVSVVATPVMT 73
TST S T +T
Sbjct: 179 STTSTSSNSTTSTVT 193
Score = 35.0 bits (79), Expect = 0.036
Identities = 17/37 (45%), Positives = 27/37 (72%)
Query: 4 TSISNSLTSTAAIGLSFTTSTTTTATFTTNTTTTITS 40
TS S S +++ + + TTST+TT+T TT+T+T+ TS
Sbjct: 197 TSTSTSTSTSTSSTFTSTTSTSTTSTSTTSTSTSATS 233
Score = 34.3 bits (77), Expect = 0.062
Identities = 25/68 (36%), Positives = 37/68 (54%), Gaps = 5/68 (7%)
Query: 7 SNSLTSTAAIGLSFTTSTTTTAT-FTTNTTTTITSGFTVNQNQLLSRGFENLVPYTSTVS 65
S S+TST++ SFTTST TT+T + +T++I+S T S + TSTV+
Sbjct: 138 STSITSTSSTS-SFTTSTATTSTSISITSTSSISSSITSTSTSTTSTSSNST---TSTVT 193
Query: 66 VVATPVMT 73
+T T
Sbjct: 194 STSTSTST 201
Score = 33.1 bits (74), Expect = 0.14
Identities = 21/67 (31%), Positives = 35/67 (52%)
Query: 7 SNSLTSTAAIGLSFTTSTTTTATFTTNTTTTITSGFTVNQNQLLSRGFENLVPYTSTVSV 66
SNS TS+++ S +TS+ T++FTT+T+ T TS + + + TS++S
Sbjct: 112 SNSSTSSSSTTSSTSTSSFITSSFTTSTSITSTSSTSSFTTSTATTSTSISITSTSSISS 171
Query: 67 VATPVMT 73
T T
Sbjct: 172 SITSTST 178
Score = 30.8 bits (68), Expect = 0.69
Identities = 20/67 (29%), Positives = 37/67 (55%), Gaps = 3/67 (4%)
Query: 10 LTSTAAIGLSFTTSTTTTATFTTN---TTTTITSGFTVNQNQLLSRGFENLVPYTSTVSV 66
+TS ++ S TTS+T+T++F T+ T+T+ITS + + + + TST S+
Sbjct: 110 ITSNSSTSSSSTTSSTSTSSFITSSFTTSTSITSTSSTSSFTTSTATTSTSISITSTSSI 169
Query: 67 VATPVMT 73
++ T
Sbjct: 170 SSSITST 176
>gi|239758058 PREDICTED: similar to mucin, partial [Homo sapiens]
Length = 967
Score = 38.9 bits (89), Expect = 0.003
Identities = 28/79 (35%), Positives = 41/79 (51%), Gaps = 6/79 (7%)
Query: 3 FTSISNSLTSTAAIGLSFTTSTTTTATFTTNTTTTITSGFTVNQNQLLSRGFENLVPYTS 62
FTS+ ST+ SFT+S TTT T T+++T +ITS T + R + + YTS
Sbjct: 123 FTSLITITGSTSHSTASFTSSITTTET-TSHSTRSITSSITTTK-----RTSHSSLSYTS 176
Query: 63 TVSVVATPVMTYGHLEGLI 81
+++ TP T LI
Sbjct: 177 SIATSETPSHTVPSFTSLI 195
Score = 31.2 bits (69), Expect = 0.53
Identities = 19/41 (46%), Positives = 26/41 (63%), Gaps = 1/41 (2%)
Query: 3 FTSISNSLTSTAAIGLSFTTSTTTTATFTTNTTTTITSGFT 43
FTS+ ST+ SFT+S TTT T T+++T +ITS T
Sbjct: 908 FTSLITITGSTSHSTASFTSSITTTET-TSHSTPSITSSVT 947
Score = 30.8 bits (68), Expect = 0.69
Identities = 20/63 (31%), Positives = 31/63 (49%)
Query: 3 FTSISNSLTSTAAIGLSFTTSTTTTATFTTNTTTTITSGFTVNQNQLLSRGFENLVPYTS 62
FTS+ + ST+ LSFT+ TTT + + +T + +S T F +L+ T
Sbjct: 293 FTSLITTTESTSHSPLSFTSVITTTESTSHSTPSFTSSIATTETTSHTPPSFTSLITTTE 352
Query: 63 TVS 65
T S
Sbjct: 353 TPS 355
Score = 30.8 bits (68), Expect = 0.69
Identities = 22/66 (33%), Positives = 34/66 (51%), Gaps = 2/66 (3%)
Query: 1 MQFTSISNSLTSTAAIGLSFTTSTTTTATFTTNTTTTITSGFTVNQNQLLSR-GFENLVP 59
+ FTS+ + ST+ SFT+S TT T T++T + TS T + S F +L+
Sbjct: 308 LSFTSVITTTESTSHSTPSFTSSIATTET-TSHTPPSFTSLITTTETPSHSNPSFTSLIT 366
Query: 60 YTSTVS 65
T + S
Sbjct: 367 ATESTS 372
Score = 30.8 bits (68), Expect = 0.69
Identities = 22/68 (32%), Positives = 37/68 (54%), Gaps = 6/68 (8%)
Query: 3 FTSISNSLTSTAAIGLSFTTSTTTTATFTTNTTTTITSGFTVNQNQLLSRGFENLVPYTS 62
FTS+ ST+ SF +S TTT T T+++T + TS + +++S + YTS
Sbjct: 653 FTSLITITESTSHSTTSFPSSITTTET-TSHSTPSFTS--LIATTEIISHSTPS---YTS 706
Query: 63 TVSVVATP 70
+++ TP
Sbjct: 707 SIATTETP 714
Score = 29.6 bits (65), Expect = 1.5
Identities = 20/65 (30%), Positives = 29/65 (44%)
Query: 1 MQFTSISNSLTSTAAIGLSFTTSTTTTATFTTNTTTTITSGFTVNQNQLLSRGFENLVPY 60
+ FTS+ S T+ S T+ TTT T + NT +S T + F +L+
Sbjct: 804 LSFTSVIASTKITSQSTPSLTSLITTTGTSSHNTLGLSSSVDTTKTTSHSTASFTSLIAT 863
Query: 61 TSTVS 65
T T S
Sbjct: 864 TETTS 868
Score = 28.9 bits (63), Expect = 2.6
Identities = 20/72 (27%), Positives = 35/72 (48%), Gaps = 1/72 (1%)
Query: 3 FTSISNSLTSTAAIGLSFTTSTTTTATFTTNTTTTITSGFTVNQNQLLSRGFENLVPYTS 62
FTS+ + ST+ S T++ TTT T + + +S T+ + F +L+ T
Sbjct: 191 FTSLITTTESTSHSNPSLTSAITTTETRSHSPPIFTSSITTIETTSHSTPSFTSLMTTTE 250
Query: 63 TVSVVATPVMTY 74
T S ++ P T+
Sbjct: 251 TTS-LSPPAFTF 261
Score = 28.5 bits (62), Expect = 3.4
Identities = 17/63 (26%), Positives = 31/63 (49%)
Query: 3 FTSISNSLTSTAAIGLSFTTSTTTTATFTTNTTTTITSGFTVNQNQLLSRGFENLVPYTS 62
FT++ S +T+ SFT+S TT T + + + +S T + + GF + + +
Sbjct: 517 FTALITSTKTTSHSTPSFTSSIATTETTSHSPPSFTSSSTTTETHSHSTPGFSSSIATSK 576
Query: 63 TVS 65
T S
Sbjct: 577 TTS 579
>gi|239749510 PREDICTED: hypothetical protein, partial [Homo
sapiens]
Length = 108
Score = 37.7 bits (86), Expect = 0.006
Identities = 18/37 (48%), Positives = 25/37 (67%)
Query: 4 TSISNSLTSTAAIGLSFTTSTTTTATFTTNTTTTITS 40
T+ + ++T T ++ TT+T TT T TT TTTTITS
Sbjct: 53 TTTTTTMTITTTTTMTITTTTMTTTTTTTMTTTTITS 89
Score = 36.6 bits (83), Expect = 0.013
Identities = 21/69 (30%), Positives = 35/69 (50%), Gaps = 2/69 (2%)
Query: 4 TSISNSLTSTAAIGLSFTTSTTTTATFTTNTTTTITSG--FTVNQNQLLSRGFENLVPYT 61
T+ + +T I ++ TT+TTTT T TT TT TIT+ T + + ++ T
Sbjct: 35 TTTTTITITTTTIAMTTTTTTTTTMTITTTTTMTITTTTMTTTTTTTMTTTTITSITNTT 94
Query: 62 STVSVVATP 70
+T ++ P
Sbjct: 95 TTTTMTPPP 103
Score = 35.4 bits (80), Expect = 0.028
Identities = 18/65 (27%), Positives = 30/65 (46%)
Query: 5 SISNSLTSTAAIGLSFTTSTTTTATFTTNTTTTITSGFTVNQNQLLSRGFENLVPYTSTV 64
+I+ ++T+T + TT T TT T TTTT T+ T+ ++ + T+T
Sbjct: 22 TITTTITNTTTTNTTTTTITITTTTIAMTTTTTTTTTMTITTTTTMTITTTTMTTTTTTT 81
Query: 65 SVVAT 69
T
Sbjct: 82 MTTTT 86
Score = 34.7 bits (78), Expect = 0.048
Identities = 20/70 (28%), Positives = 29/70 (41%)
Query: 4 TSISNSLTSTAAIGLSFTTSTTTTATFTTNTTTTITSGFTVNQNQLLSRGFENLVPYTST 63
T+ + +T+T I + T +TTT T TT T TT T T + T T
Sbjct: 11 TTTTTIITTTMTITTTITNTTTTNTTTTTITITTTTIAMTTTTTTTTTMTITTTTTMTIT 70
Query: 64 VSVVATPVMT 73
+ + T T
Sbjct: 71 TTTMTTTTTT 80
Score = 34.3 bits (77), Expect = 0.062
Identities = 24/71 (33%), Positives = 33/71 (46%), Gaps = 1/71 (1%)
Query: 4 TSISNSLTSTAAIGLSFTTSTTTTATFTTN-TTTTITSGFTVNQNQLLSRGFENLVPYTS 62
T + + T+T I + T +TT T T TTN TTTTIT T + + T+
Sbjct: 5 TITTTTTTTTTIITTTMTITTTITNTTTTNTTTTTITITTTTIAMTTTTTTTTTMTITTT 64
Query: 63 TVSVVATPVMT 73
T + T MT
Sbjct: 65 TTMTITTTTMT 75
Score = 34.3 bits (77), Expect = 0.062
Identities = 22/79 (27%), Positives = 37/79 (46%), Gaps = 1/79 (1%)
Query: 4 TSISNSLTSTAAIGLSFTTSTTTTATFTTNTTTTITSGFTVNQNQLLSRGFENLVPYTST 63
T I+ ++T T I + TT+TTTT T TT +T+ T ++ + T+T
Sbjct: 15 TIITTTMTITTTITNTTTTNTTTTTITITTTTIAMTTTTTTTTTMTITT-TTTMTITTTT 73
Query: 64 VSVVATPVMTYGHLEGLIN 82
++ T MT + + N
Sbjct: 74 MTTTTTTTMTTTTITSITN 92
Score = 33.5 bits (75), Expect = 0.11
Identities = 22/62 (35%), Positives = 30/62 (48%), Gaps = 1/62 (1%)
Query: 13 TAAIGLSFTTSTTTTATFTTNT-TTTITSGFTVNQNQLLSRGFENLVPYTSTVSVVATPV 71
T I ++ TT+TTTT TT T TTTIT+ T N + T+T + T
Sbjct: 1 TTTITITTTTTTTTTIITTTMTITTTITNTTTTNTTTTTITITTTTIAMTTTTTTTTTMT 60
Query: 72 MT 73
+T
Sbjct: 61 IT 62
Score = 31.6 bits (70), Expect = 0.40
Identities = 22/73 (30%), Positives = 31/73 (42%), Gaps = 3/73 (4%)
Query: 4 TSISNSLTSTAAIGLSFTT---STTTTATFTTNTTTTITSGFTVNQNQLLSRGFENLVPY 60
T+ + + T+T I ++ TT +TTTT T T TTT T T +
Sbjct: 28 TNTTTTNTTTTTITITTTTIAMTTTTTTTTTMTITTTTTMTITTTTMTTTTTTTMTTTTI 87
Query: 61 TSTVSVVATPVMT 73
TS + T MT
Sbjct: 88 TSITNTTTTTTMT 100
Score = 30.8 bits (68), Expect = 0.69
Identities = 18/70 (25%), Positives = 32/70 (45%)
Query: 4 TSISNSLTSTAAIGLSFTTSTTTTATFTTNTTTTITSGFTVNQNQLLSRGFENLVPYTST 63
T+ + ++T+T + TT+TTT TT T T T+ T ++ + T+T
Sbjct: 36 TTTTITITTTTIAMTTTTTTTTTMTITTTTTMTITTTTMTTTTTTTMTTTTITSITNTTT 95
Query: 64 VSVVATPVMT 73
+ + P T
Sbjct: 96 TTTMTPPPPT 105
Score = 30.4 bits (67), Expect = 0.90
Identities = 16/70 (22%), Positives = 32/70 (45%)
Query: 4 TSISNSLTSTAAIGLSFTTSTTTTATFTTNTTTTITSGFTVNQNQLLSRGFENLVPYTST 63
T+ + + T+ ++ TT+ T T T T TTT + T+ + + T+T
Sbjct: 7 TTTTTTTTTIITTTMTITTTITNTTTTNTTTTTITITTTTIAMTTTTTTTTTMTITTTTT 66
Query: 64 VSVVATPVMT 73
+++ T + T
Sbjct: 67 MTITTTTMTT 76
Score = 30.0 bits (66), Expect = 1.2
Identities = 24/69 (34%), Positives = 34/69 (49%), Gaps = 7/69 (10%)
Query: 11 TSTAAIGLSFTTST---TTTATFT---TNTTTTITSGFTVNQNQLLSRGFENLVPYTSTV 64
T+T I + TT+T TTT T T TNTTTT T+ T+ + T+T+
Sbjct: 1 TTTITITTTTTTTTTIITTTMTITTTITNTTTTNTTTTTITIT-TTTIAMTTTTTTTTTM 59
Query: 65 SVVATPVMT 73
++ T MT
Sbjct: 60 TITTTTTMT 68
Score = 29.6 bits (65), Expect = 1.5
Identities = 17/40 (42%), Positives = 23/40 (57%), Gaps = 1/40 (2%)
Query: 1 MQFTSISNSLTSTAAIGLSFTTS-TTTTATFTTNTTTTIT 39
M T+ + +T + + TT+ TTTT T TNTTTT T
Sbjct: 59 MTITTTTTMTITTTTMTTTTTTTMTTTTITSITNTTTTTT 98
>gi|239743291 PREDICTED: mucin 3A, intestinal [Homo sapiens]
Length = 1486
Score = 37.4 bits (85), Expect = 0.007
Identities = 26/80 (32%), Positives = 40/80 (50%), Gaps = 11/80 (13%)
Query: 3 FTSISNSLTSTAAIGLSFT-----TSTTTTATFTTNTTT------TITSGFTVNQNQLLS 51
FT++ ++TST+ I S T TS TTTA+ T T T TI S V + ++
Sbjct: 246 FTTLKTAVTSTSPITSSITSTNTVTSMTTTASQPTATNTLSSPTRTILSSTPVLSTETIT 305
Query: 52 RGFENLVPYTSTVSVVATPV 71
G N P ++ V+ + T +
Sbjct: 306 SGITNTTPLSTLVTTLPTTI 325
Score = 33.9 bits (76), Expect = 0.081
Identities = 21/63 (33%), Positives = 31/63 (49%)
Query: 3 FTSISNSLTSTAAIGLSFTTSTTTTATFTTNTTTTITSGFTVNQNQLLSRGFENLVPYTS 62
FTS + +T+ SFT+S TTT T + NT + +S T N + F + + T
Sbjct: 470 FTSSITTTETTSHSARSFTSSITTTETTSHNTRSFTSSITTTETNSHSTTSFTSSITTTE 529
Query: 63 TVS 65
T S
Sbjct: 530 TTS 532
Score = 31.6 bits (70), Expect = 0.40
Identities = 25/72 (34%), Positives = 38/72 (52%), Gaps = 3/72 (4%)
Query: 3 FTSISNSLTSTAAIGLSFTTSTTTTATFTTNTTTTITSGFTVNQNQLLSR-GFENLVPYT 61
FTS + + + SFT+S TTT T T+++T + +S T + L S G + V T
Sbjct: 504 FTSSITTTETNSHSTTSFTSSITTTET-TSHSTPSFSSSITTTETPLHSTPGLTSWVTTT 562
Query: 62 STVSVVATPVMT 73
T S + TP +T
Sbjct: 563 KTTSHI-TPGLT 573
Score = 30.8 bits (68), Expect = 0.69
Identities = 22/65 (33%), Positives = 34/65 (52%), Gaps = 2/65 (3%)
Query: 2 QFTSISNSLTSTAAIGLSFTTSTTTTATFTTNTTTTITSGFTVNQNQLLS-RGFENLVPY 60
+FTS + +T+ SFT+ TTT T T+++T + TS T + S R F + +
Sbjct: 435 RFTSSFTNTKTTSHRSPSFTSLITTTET-TSHSTPSFTSSITTTETTSHSARSFTSSITT 493
Query: 61 TSTVS 65
T T S
Sbjct: 494 TETTS 498
Score = 30.4 bits (67), Expect = 0.90
Identities = 20/69 (28%), Positives = 36/69 (52%), Gaps = 6/69 (8%)
Query: 3 FTSISNSLTSTAAIGLSFTTSTTTTATFTTNTTTTITSGFTVNQNQLLSRGFENLVPYTS 62
FTS + +T+ SFT+S TTT T +++TT+ TS T + + ++S
Sbjct: 487 FTSSITTTETTSHNTRSFTSSITTTET-NSHSTTSFTSSITTTETT-----SHSTPSFSS 540
Query: 63 TVSVVATPV 71
+++ TP+
Sbjct: 541 SITTTETPL 549
Score = 29.6 bits (65), Expect = 1.5
Identities = 21/64 (32%), Positives = 34/64 (53%), Gaps = 2/64 (3%)
Query: 3 FTSISNSLTSTAAIGLSFTTSTTTTATFTTNTTTTITSGFTVNQ-NQLLSRGFENLVPYT 61
FTS+ + +T+ SFT+S TTT T T+++ + TS T + +R F + + T
Sbjct: 453 FTSLITTTETTSHSTPSFTSSITTTET-TSHSARSFTSSITTTETTSHNTRSFTSSITTT 511
Query: 62 STVS 65
T S
Sbjct: 512 ETNS 515
Score = 27.3 bits (59), Expect = 7.6
Identities = 26/82 (31%), Positives = 37/82 (45%), Gaps = 20/82 (24%)
Query: 4 TSISNSLTSTAAIGLS---FTTSTTTTAT------------FTTNTTTTITSGFT--VNQ 46
TS ++S+T+T S F++S TTT T TT TT+ IT G T +
Sbjct: 519 TSFTSSITTTETTSHSTPSFSSSITTTETPLHSTPGLTSWVTTTKTTSHITPGLTSSITT 578
Query: 47 NQLLSR---GFENLVPYTSTVS 65
+ S GF + + T T S
Sbjct: 579 TETTSHSTPGFTSSITTTETTS 600
Score = 26.9 bits (58), Expect = 9.9
Identities = 25/72 (34%), Positives = 35/72 (48%), Gaps = 3/72 (4%)
Query: 3 FTSISNSLTSTAAIGLSFTTSTTTTATFTTNTTTTITSGFT-VNQNQLLSRGFENLVPYT 61
F+S + T T+ FT+S TTT T +++T TS FT S F +L+ T
Sbjct: 402 FSSSTIYSTVTSHSTPRFTSSITTTET-PSHSTPRFTSSFTNTKTTSHRSPSFTSLITTT 460
Query: 62 STVSVVATPVMT 73
T S +TP T
Sbjct: 461 ETTS-HSTPSFT 471
>gi|239508973 PREDICTED: similar to Mucin-3A [Homo sapiens]
Length = 596
Score = 37.4 bits (85), Expect = 0.007
Identities = 26/80 (32%), Positives = 40/80 (50%), Gaps = 11/80 (13%)
Query: 3 FTSISNSLTSTAAIGLSFT-----TSTTTTATFTTNTTT------TITSGFTVNQNQLLS 51
FT++ ++TST+ I S T TS TTTA+ T T T TI S V + ++
Sbjct: 246 FTTLKTAVTSTSPITSSITSTNTVTSMTTTASQPTATNTLSSPTRTILSSTPVLSTETIT 305
Query: 52 RGFENLVPYTSTVSVVATPV 71
G N P ++ V+ + T +
Sbjct: 306 SGITNTTPLSTLVTTLPTTI 325
Score = 26.9 bits (58), Expect = 9.9
Identities = 17/49 (34%), Positives = 29/49 (59%), Gaps = 6/49 (12%)
Query: 4 TSISNSLTSTAAIGL----SFTTST--TTTATFTTNTTTTITSGFTVNQ 46
T ++N +T+T I SF++ST +T + + +TT ITS FT ++
Sbjct: 382 TPMTNLVTTTTEISSHSTPSFSSSTIYSTVTSHISTSTTAITSHFTTSE 430
>gi|161019170 mucin 5AC [Homo sapiens]
Length = 6207
Score = 35.8 bits (81), Expect = 0.021
Identities = 23/77 (29%), Positives = 34/77 (44%), Gaps = 4/77 (5%)
Query: 3 FTSISNSLTSTAAIGLSFTTSTT----TTATFTTNTTTTITSGFTVNQNQLLSRGFENLV 58
+T +S + T TA + + +ST T+ TT TTTT +G + V
Sbjct: 3832 WTRLSQTTTPTATMSTATPSSTPETVHTSTVLTTTTTTTRATGSVATPSSTPGTAHTTKV 3891
Query: 59 PYTSTVSVVATPVMTYG 75
P T+T ATP + G
Sbjct: 3892 PTTTTTGFTATPSSSPG 3908
Score = 34.3 bits (77), Expect = 0.062
Identities = 22/66 (33%), Positives = 33/66 (50%), Gaps = 2/66 (3%)
Query: 4 TSISNSLTSTAAIGLSFTTSTTTTATFTTNTTTTITSGFTVNQNQLLSRGFENLVPYTST 63
T ++ + T+T A G T S+T TT TT T+GFT + S G P T+
Sbjct: 5036 TVLTATATTTGATGSVATPSSTPGTAHTTKVPTTTTTGFTATPSS--SPGTALTPPTTTP 5093
Query: 64 VSVVAT 69
+S ++T
Sbjct: 5094 MSTMST 5099
Score = 33.1 bits (74), Expect = 0.14
Identities = 22/77 (28%), Positives = 32/77 (41%), Gaps = 4/77 (5%)
Query: 3 FTSISNSLTSTAAIGLSFTTSTTTTA----TFTTNTTTTITSGFTVNQNQLLSRGFENLV 58
+T +S + T TA + + +ST TA TT TTT +G + V
Sbjct: 4334 WTRLSQTTTPTATMSTATPSSTPETAHTSTVLTTTATTTRATGSVATPSSTPGTAHTTKV 4393
Query: 59 PYTSTVSVVATPVMTYG 75
P T+T TP + G
Sbjct: 4394 PTTTTTGFTVTPSSSPG 4410
Score = 32.7 bits (73), Expect = 0.18
Identities = 22/67 (32%), Positives = 31/67 (46%), Gaps = 4/67 (5%)
Query: 4 TSISNSLTSTAAIGLSFTTSTTTTATFTTNTTTTITSGFTVNQNQLLSRGFENLVPYTST 63
T ++ + T+T A G T S+T TT TT T+GFT + S G +P
Sbjct: 3216 TVLTTTATTTGATGSVATPSSTPGTAHTTKVLTTTTTGFTATPSS--SPGTARTLPV--W 3271
Query: 64 VSVVATP 70
+S TP
Sbjct: 3272 ISTTTTP 3278
Score = 32.3 bits (72), Expect = 0.24
Identities = 22/77 (28%), Positives = 32/77 (41%), Gaps = 4/77 (5%)
Query: 3 FTSISNSLTSTAAIGLSFTTSTTTTA----TFTTNTTTTITSGFTVNQNQLLSRGFENLV 58
+T +S + T TA + + +ST TA T TTT +G + V
Sbjct: 2685 WTRLSQTTTPTATMSTATPSSTPETAHTSTVLTATATTTGATGSVATPSSTPGTAHTTKV 2744
Query: 59 PYTSTVSVVATPVMTYG 75
P T+T ATP + G
Sbjct: 2745 PTTTTTGFTATPSSSPG 2761
Score = 31.6 bits (70), Expect = 0.40
Identities = 21/77 (27%), Positives = 32/77 (41%), Gaps = 4/77 (5%)
Query: 3 FTSISNSLTSTAAIGLSFTTSTT----TTATFTTNTTTTITSGFTVNQNQLLSRGFENLV 58
+T +S + T TA + + +ST T+ T TTT +G + V
Sbjct: 5007 WTRLSQTTTPTATMSTATPSSTPETVHTSTVLTATATTTGATGSVATPSSTPGTAHTTKV 5066
Query: 59 PYTSTVSVVATPVMTYG 75
P T+T ATP + G
Sbjct: 5067 PTTTTTGFTATPSSSPG 5083
Score = 29.6 bits (65), Expect = 1.5
Identities = 21/77 (27%), Positives = 32/77 (41%), Gaps = 4/77 (5%)
Query: 3 FTSISNSLTSTAAIGLSFTTSTT----TTATFTTNTTTTITSGFTVNQNQLLSRGFENLV 58
+T +S + T TA + + +ST T+ TT TTT +G + V
Sbjct: 3187 WTRLSQTTTPTATMSTATPSSTPETVHTSTVLTTTATTTGATGSVATPSSTPGTAHTTKV 3246
Query: 59 PYTSTVSVVATPVMTYG 75
T+T ATP + G
Sbjct: 3247 LTTTTTGFTATPSSSPG 3263
>gi|153945878 mucin 5, subtype B, tracheobronchial [Homo sapiens]
Length = 5765
Score = 35.8 bits (81), Expect = 0.021
Identities = 23/77 (29%), Positives = 34/77 (44%), Gaps = 4/77 (5%)
Query: 3 FTSISNSLTSTAAIGLSFTTSTT----TTATFTTNTTTTITSGFTVNQNQLLSRGFENLV 58
+T +S + T TA + + +ST T+ TT TTTT +G + V
Sbjct: 3252 WTRLSQTTTPTATMSTATPSSTPETVHTSTVLTTTTTTTRATGSVATPSSTPGTAHTTKV 3311
Query: 59 PYTSTVSVVATPVMTYG 75
P T+T ATP + G
Sbjct: 3312 PTTTTTGFTATPSSSPG 3328
Score = 33.1 bits (74), Expect = 0.14
Identities = 22/77 (28%), Positives = 32/77 (41%), Gaps = 4/77 (5%)
Query: 3 FTSISNSLTSTAAIGLSFTTSTTTTA----TFTTNTTTTITSGFTVNQNQLLSRGFENLV 58
+T +S + T TA + + +ST TA TT TTT +G + V
Sbjct: 3809 WTRLSQTTTPTATMSTATPSSTPETAHTSTVLTTTATTTRATGSVATPSSTPGTAHTTKV 3868
Query: 59 PYTSTVSVVATPVMTYG 75
P T+T TP + G
Sbjct: 3869 PTTTTTGFTVTPSSSPG 3885
Score = 32.7 bits (73), Expect = 0.18
Identities = 22/67 (32%), Positives = 31/67 (46%), Gaps = 4/67 (5%)
Query: 4 TSISNSLTSTAAIGLSFTTSTTTTATFTTNTTTTITSGFTVNQNQLLSRGFENLVPYTST 63
T ++ + T+T A G T S+T TT TT T+GFT + S G +P
Sbjct: 2581 TVLTTTATTTGATGSVATPSSTPGTAHTTKVLTTTTTGFTATPSS--SPGTARTLPV--W 2636
Query: 64 VSVVATP 70
+S TP
Sbjct: 2637 ISTTTTP 2643
Score = 32.3 bits (72), Expect = 0.24
Identities = 22/77 (28%), Positives = 32/77 (41%), Gaps = 4/77 (5%)
Query: 3 FTSISNSLTSTAAIGLSFTTSTTTTA----TFTTNTTTTITSGFTVNQNQLLSRGFENLV 58
+T +S + T TA + + +ST TA T TTT +G + V
Sbjct: 1995 WTRLSQTTTPTATMSTATPSSTPETAHTSTVLTATATTTGATGSVATPSSTPGTAHTTKV 2054
Query: 59 PYTSTVSVVATPVMTYG 75
P T+T ATP + G
Sbjct: 2055 PTTTTTGFTATPSSSPG 2071
Score = 32.3 bits (72), Expect = 0.24
Identities = 21/72 (29%), Positives = 31/72 (43%)
Query: 4 TSISNSLTSTAAIGLSFTTSTTTTATFTTNTTTTITSGFTVNQNQLLSRGFENLVPYTST 63
T ++ + T+T A G T S+T TT TT T+GFT + V ++T
Sbjct: 4566 TVLTATATTTGATGSVATPSSTPGTAHTTKVPTTTTTGFTATPSSSPGTALTPPVWISTT 4625
Query: 64 VSVVATPVMTYG 75
+ T T G
Sbjct: 4626 TTPTTTTPTTSG 4637
Score = 31.6 bits (70), Expect = 0.40
Identities = 21/77 (27%), Positives = 32/77 (41%), Gaps = 4/77 (5%)
Query: 3 FTSISNSLTSTAAIGLSFTTSTT----TTATFTTNTTTTITSGFTVNQNQLLSRGFENLV 58
+T +S + T TA + + +ST T+ T TTT +G + V
Sbjct: 4537 WTRLSQTTTPTATMSTATPSSTPETVHTSTVLTATATTTGATGSVATPSSTPGTAHTTKV 4596
Query: 59 PYTSTVSVVATPVMTYG 75
P T+T ATP + G
Sbjct: 4597 PTTTTTGFTATPSSSPG 4613
Score = 29.6 bits (65), Expect = 1.5
Identities = 21/77 (27%), Positives = 32/77 (41%), Gaps = 4/77 (5%)
Query: 3 FTSISNSLTSTAAIGLSFTTSTT----TTATFTTNTTTTITSGFTVNQNQLLSRGFENLV 58
+T +S + T TA + + +ST T+ TT TTT +G + V
Sbjct: 2552 WTRLSQTTTPTATMSTATPSSTPETVHTSTVLTTTATTTGATGSVATPSSTPGTAHTTKV 2611
Query: 59 PYTSTVSVVATPVMTYG 75
T+T ATP + G
Sbjct: 2612 LTTTTTGFTATPSSSPG 2628
Score = 28.5 bits (62), Expect = 3.4
Identities = 21/71 (29%), Positives = 33/71 (46%), Gaps = 4/71 (5%)
Query: 4 TSISNSLTSTAAIGLSFTTSTTTTATFTTNTTTTITSGFTVNQNQLLSRGFENLVPYTST 63
T+ + T +++ G + T + T T TTT TSG TV + + V T+T
Sbjct: 4600 TTTGFTATPSSSPGTALTPPVWISTTTTPTTTTPTTSGSTVTPSSIPGTTHTARVLTTTT 4659
Query: 64 VSV----VATP 70
+V +ATP
Sbjct: 4660 TTVATGSMATP 4670
>gi|91208418 transcription elongation regulator 1 isoform 2 [Homo
sapiens]
Length = 1077
Score = 34.7 bits (78), Expect = 0.048
Identities = 27/65 (41%), Positives = 33/65 (50%), Gaps = 7/65 (10%)
Query: 11 TSTAAIGLSFTTSTTTTATFTTNTTTTITSGFTVNQNQLLSRGFENLVP--YTSTVSVVA 68
TST++ S TTSTTTTAT T +T T+ Q+Q S P ST + A
Sbjct: 272 TSTSSSTPSSTTSTTTTATSVAQTVSTPTT-----QDQTPSSAVSVATPTVSVSTPAPTA 326
Query: 69 TPVMT 73
TPV T
Sbjct: 327 TPVQT 331
>gi|21327715 transcription elongation regulator 1 isoform 1 [Homo
sapiens]
Length = 1098
Score = 34.7 bits (78), Expect = 0.048
Identities = 27/65 (41%), Positives = 33/65 (50%), Gaps = 7/65 (10%)
Query: 11 TSTAAIGLSFTTSTTTTATFTTNTTTTITSGFTVNQNQLLSRGFENLVP--YTSTVSVVA 68
TST++ S TTSTTTTAT T +T T+ Q+Q S P ST + A
Sbjct: 272 TSTSSSTPSSTTSTTTTATSVAQTVSTPTT-----QDQTPSSAVSVATPTVSVSTPAPTA 326
Query: 69 TPVMT 73
TPV T
Sbjct: 327 TPVQT 331
>gi|239758038 PREDICTED: mucin 3A, cell surface associated, partial
[Homo sapiens]
Length = 909
Score = 33.5 bits (75), Expect = 0.11
Identities = 21/63 (33%), Positives = 31/63 (49%)
Query: 3 FTSISNSLTSTAAIGLSFTTSTTTTATFTTNTTTTITSGFTVNQNQLLSRGFENLVPYTS 62
FTS + +T+ SFT+S TTT T + NT + +S T N + F + + T
Sbjct: 269 FTSSITTTETTSHSAHSFTSSITTTETTSHNTRSFTSSITTTETNSHSTTSFTSSITTTE 328
Query: 63 TVS 65
T S
Sbjct: 329 TTS 331
Score = 30.0 bits (66), Expect = 1.2
Identities = 21/64 (32%), Positives = 34/64 (53%), Gaps = 2/64 (3%)
Query: 3 FTSISNSLTSTAAIGLSFTTSTTTTATFTTNTTTTITSGFTVNQNQLLSR-GFENLVPYT 61
FTS + + ++ SFT+S TTT T T+++T + TS + + S F +L+ T
Sbjct: 14 FTSSITTTETPSSSTPSFTSSITTTET-TSHSTPSFTSSISTTETTSHSTPSFTSLITIT 72
Query: 62 STVS 65
T S
Sbjct: 73 ETTS 76
Score = 30.0 bits (66), Expect = 1.2
Identities = 25/72 (34%), Positives = 38/72 (52%), Gaps = 3/72 (4%)
Query: 3 FTSISNSLTSTAAIGL-SFTTSTTTTATFTTNTTTTITSGFTVNQNQLLSRGFENLVPYT 61
FTS SN++T T + S+ TS TTT T +++T + +S T + GF + + T
Sbjct: 150 FTS-SNTITETTSHSTPSYITSITTTETPSSSTPSFSSSITTTETTSHSTPGFTSSITTT 208
Query: 62 STVSVVATPVMT 73
T S +TP T
Sbjct: 209 ETTS-HSTPSFT 219
Score = 30.0 bits (66), Expect = 1.2
Identities = 22/69 (31%), Positives = 36/69 (52%), Gaps = 9/69 (13%)
Query: 5 SISNSLTSTAAIGLS---FTTSTTTTATFTTNTTTTITSGFTVNQNQLLSRGFENLVPYT 61
S S+S+T+T S FT+S TTT T T+++T + TS T + + +T
Sbjct: 183 SFSSSITTTETTSHSTPGFTSSITTTET-TSHSTPSFTSSITTTETT-----SHDTPSFT 236
Query: 62 STVSVVATP 70
S+++ TP
Sbjct: 237 SSITTSETP 245
Score = 30.0 bits (66), Expect = 1.2
Identities = 22/71 (30%), Positives = 35/71 (49%), Gaps = 1/71 (1%)
Query: 3 FTSISNSLTSTAAIGLSFTTSTTTTATFTTNTTTTITSGFTVNQNQLLSRGFENLVPYTS 62
FTS + +T+ SFT+S TTT T T++ T + TS T ++ S + T+
Sbjct: 201 FTSSITTTETTSHSTPSFTSSITTTET-TSHDTPSFTSSITTSETPSHSTPSSTSLITTT 259
Query: 63 TVSVVATPVMT 73
+ +TP T
Sbjct: 260 KTTSHSTPSFT 270
Score = 29.6 bits (65), Expect = 1.5
Identities = 20/63 (31%), Positives = 30/63 (47%)
Query: 3 FTSISNSLTSTAAIGLSFTTSTTTTATFTTNTTTTITSGFTVNQNQLLSRGFENLVPYTS 62
FTS + +T+ SFT+S T T T + +T + ITS T + F + + T
Sbjct: 133 FTSSIRTTETTSYSTPSFTSSNTITETTSHSTPSYITSITTTETPSSSTPSFSSSITTTE 192
Query: 63 TVS 65
T S
Sbjct: 193 TTS 195
Score = 29.3 bits (64), Expect = 2.0
Identities = 23/71 (32%), Positives = 34/71 (47%), Gaps = 1/71 (1%)
Query: 3 FTSISNSLTSTAAIGLSFTTSTTTTATFTTNTTTTITSGFTVNQNQLLSRGFENLVPYTS 62
FTS+ +T+ S+TTS TTT T + +T + TS T + F + + T
Sbjct: 65 FTSLITITETTSHSTPSYTTSITTTETPSHSTPSYTTSITTTETPSHSTPSFTSSITTTE 124
Query: 63 TVSVVATPVMT 73
T S +TP T
Sbjct: 125 TTS-HSTPSFT 134
Score = 27.7 bits (60), Expect = 5.8
Identities = 18/66 (27%), Positives = 34/66 (51%), Gaps = 3/66 (4%)
Query: 5 SISNSLTSTAAIGLSFTTSTTTTATFTTNTTTTITSGFTVNQNQLLSRGFENLVPYTSTV 64
S ++S+T+T S +T + T++ TT TT+ T FT + N + + Y +++
Sbjct: 115 SFTSSITTTETT--SHSTPSFTSSIRTTETTSYSTPSFT-SSNTITETTSHSTPSYITSI 171
Query: 65 SVVATP 70
+ TP
Sbjct: 172 TTTETP 177
Score = 27.7 bits (60), Expect = 5.8
Identities = 21/69 (30%), Positives = 32/69 (46%), Gaps = 7/69 (10%)
Query: 3 FTSISNSLTSTAAIGLSFTTSTTTTATFTTNTTTTITSGFTVNQNQLLSRGFENLVPYTS 62
FTS + + + SFT+S TTT T T+++T + +S T + TS
Sbjct: 303 FTSSITTTETNSHSTTSFTSSITTTET-TSHSTPSFSSSITTTET------XXXXXXXTS 355
Query: 63 TVSVVATPV 71
+V TPV
Sbjct: 356 ETAVTPTPV 364
Score = 27.3 bits (59), Expect = 7.6
Identities = 21/65 (32%), Positives = 35/65 (53%), Gaps = 6/65 (9%)
Query: 4 TSISNSLTSTAAIGLSFTTSTTTTATFTTNT---TTTITSGFTVNQNQLLSRGFENLVPY 60
TS+ + +T+ SFT+S TTT T + + T++IT+ T + N +R F + +
Sbjct: 253 TSLITTTKTTSHSTPSFTSSITTTETTSHSAHSFTSSITTTETTSHN---TRSFTSSITT 309
Query: 61 TSTVS 65
T T S
Sbjct: 310 TETNS 314
>gi|169171850 PREDICTED: similar to intestinal mucin MUC3B [Homo
sapiens]
Length = 385
Score = 33.5 bits (75), Expect = 0.11
Identities = 21/75 (28%), Positives = 40/75 (53%), Gaps = 4/75 (5%)
Query: 3 FTSISNSLTSTAAIGLSFTTSTTTTATFTTNTTTTITSGFTVNQNQLLSR----GFENLV 58
FT++ ++TST+ I + T++ T T+ TT + T T+ + + +LS E +
Sbjct: 183 FTTLKTAVTSTSPITSTITSTNTVTSMTTTTSRPTATNTLSSLTSSILSSTPAPNTEVIT 242
Query: 59 PYTSTVSVVATPVMT 73
+T+T + +T V T
Sbjct: 243 SHTTTTTPPSTLVTT 257
>gi|34878904 synaptonemal complex protein 1 [Homo sapiens]
Length = 976
Score = 33.5 bits (75), Expect = 0.11
Identities = 27/112 (24%), Positives = 52/112 (46%), Gaps = 11/112 (9%)
Query: 74 YGHLEGLINEWNLELEDQEKYFLLQATQVNAWDHTLIENGEMIRILHGEVN----KVKLD 129
Y ++ L E+ E+ D+EK L Q+ ++ + + ++ +VN K KL
Sbjct: 247 YEKIQHLEQEYKKEINDKEKQVSLLLIQITEKENKMKDLTFLLEESRDKVNQLEEKTKLQ 306
Query: 130 QKRLEQELDFILSQQQELEFLLTYLEESTRDQSGLHYLQDADEEHVEISTRS 181
+ L+Q ++ +ELE + L+ S Q L EE ++I+T++
Sbjct: 307 SENLKQSIEKQHHLTKELEDIKVSLQRSVSTQKAL-------EEDLQIATKT 351
>gi|32967601 ankyrin 3 isoform 1 [Homo sapiens]
Length = 4377
Score = 33.5 bits (75), Expect = 0.11
Identities = 16/23 (69%), Positives = 18/23 (78%)
Query: 22 TSTTTTATFTTNTTTTITSGFTV 44
T+TTTTAT TT TTTT T+ TV
Sbjct: 3960 TTTTTTATTTTTTTTTTTTSCTV 3982
Score = 31.2 bits (69), Expect = 0.53
Identities = 15/29 (51%), Positives = 19/29 (65%)
Query: 21 TTSTTTTATFTTNTTTTITSGFTVNQNQL 49
TT+TT T T TT TTTT + V ++QL
Sbjct: 3961 TTTTTATTTTTTTTTTTTSCTVKVRKSQL 3989
Score = 30.4 bits (67), Expect = 0.90
Identities = 14/20 (70%), Positives = 15/20 (75%)
Query: 21 TTSTTTTATFTTNTTTTITS 40
TT+TTT T TT TTTT TS
Sbjct: 3960 TTTTTTATTTTTTTTTTTTS 3979
Score = 29.3 bits (64), Expect = 2.0
Identities = 15/34 (44%), Positives = 19/34 (55%)
Query: 7 SNSLTSTAAIGLSFTTSTTTTATFTTNTTTTITS 40
+ L S + + T TTTT T TT TTTT T+
Sbjct: 3943 AKQLPSKLPVKVRSTCVTTTTTTATTTTTTTTTT 3976
>gi|87162461 fragile X mental retardation 2 [Homo sapiens]
Length = 1311
Score = 33.5 bits (75), Expect = 0.11
Identities = 24/71 (33%), Positives = 39/71 (54%), Gaps = 5/71 (7%)
Query: 9 SLTSTAAIGLSFTTSTTTTATFTTNTTT--TITSGFT---VNQNQLLSRGFENLVPYTST 63
++T+TA + + T + T TAT TT TTT TITS T ++ + L + L +S+
Sbjct: 995 TVTATAIVTTTVTATATATATTTTTTTTISTITSTITTGLMDSSHLEMTSWAALPLLSSS 1054
Query: 64 VSVVATPVMTY 74
+ V P +T+
Sbjct: 1055 STNVRRPKLTF 1065
Score = 32.3 bits (72), Expect = 0.24
Identities = 24/99 (24%), Positives = 43/99 (43%), Gaps = 26/99 (26%)
Query: 5 SISNSLTSTAAIGLSFTTSTTTTATFTTNTTTTITSGFTVNQNQLLSRGFENLVPYTSTV 64
+++N+ +TA + + +TT TAT T TTT T T+T+
Sbjct: 985 TVTNTAIATATVTATAIVTTTVTATATATATTTTT---------------------TTTI 1023
Query: 65 SVVATPVMTYGHLEGLINEWNLELEDQEKYFLLQATQVN 103
S + + + T GL++ +LE+ LL ++ N
Sbjct: 1024 STITSTITT-----GLMDSSHLEMTSWAALPLLSSSSTN 1057
>gi|67782365 keratin 7 [Homo sapiens]
Length = 469
Score = 33.1 bits (74), Expect = 0.14
Identities = 23/88 (26%), Positives = 42/88 (47%), Gaps = 11/88 (12%)
Query: 77 LEGLINEWNLELEDQEKYFLLQATQVNAWDHTLIE--------NGEMIRILHGEVNKVKL 128
L+G+I E + E+ K + AW T E +G+ +R E++++
Sbjct: 257 LDGIIAEVKAQYEEMAK---CSRAEAEAWYQTKFETLQAQAGKHGDDLRNTRNEISEMNR 313
Query: 129 DQKRLEQELDFILSQQQELEFLLTYLEE 156
+RL+ E+D I +Q+ +LE + EE
Sbjct: 314 AIQRLQAEIDNIKNQRAKLEAAIAEAEE 341
>gi|55770888 early endosome antigen 1, 162kD [Homo sapiens]
Length = 1411
Score = 32.7 bits (73), Expect = 0.18
Identities = 23/105 (21%), Positives = 48/105 (45%), Gaps = 2/105 (1%)
Query: 74 YGHLEGLINEWNLELEDQEKYFLLQATQVNAWDHTLIENGEMIRILHGEVNKVK-LDQKR 132
Y HL+ + + E++E++ L +++N L+E + HG + + + L ++
Sbjct: 388 YQHLKAEFKQLQQQREEKEQHGLQLQSEINQLHSKLLETERQLGEAHGRLKEQRQLSSEK 447
Query: 133 LEQELDFILSQQQELEFLLTYLEESTRDQSGL-HYLQDADEEHVE 176
L + + Q +L L L+E + + L H L ++H E
Sbjct: 448 LMDKEQQVADLQLKLSRLEEQLKEKVTNSTELQHQLDKTKQQHQE 492
>gi|197927452 dynein, axonemal, heavy chain 1 [Homo sapiens]
Length = 4265
Score = 32.7 bits (73), Expect = 0.18
Identities = 25/110 (22%), Positives = 47/110 (42%), Gaps = 2/110 (1%)
Query: 55 ENLVPYTSTVSVVATPVMTYGHLEGLINEWNLELEDQEKYFLLQATQVNAWDHTLIENGE 114
E PY + + P M H E L N+ N+ + + + ++N DH IE+
Sbjct: 1089 EEFKPYIPLIQGLRNPGMRIRHWETLSNQININVRPKANLTFARCLEMNLQDH--IESIS 1146
Query: 115 MIRILHGEVNKVKLDQKRLEQELDFILSQQQELEFLLTYLEESTRDQSGL 164
+ + G+ ++ ++E+E IL + TY+ +S + S L
Sbjct: 1147 KVAEVAGKEYAIEQALDKMEKEWSTILFNVLPYKATDTYILKSPDEASQL 1196
>gi|154759259 spectrin, alpha, non-erythrocytic 1 (alpha-fodrin)
isoform 2 [Homo sapiens]
Length = 2472
Score = 32.3 bits (72), Expect = 0.24
Identities = 31/101 (30%), Positives = 46/101 (45%), Gaps = 4/101 (3%)
Query: 77 LEGLINEWNLELEDQEKYFLLQATQVNAWDHTLIENGEMIRILHGEVNKVKLDQKRLEQE 136
LE + E + ++ L ATQ+ LI N E IR L E + D RL++
Sbjct: 307 LEDKVKALCAEADRLQQSHPLSATQIQVKREELITNWEQIRTLAAERHARLNDSYRLQRF 366
Query: 137 L-DF--ILSQQQELEFLLTYLEESTRDQSGLHYLQDADEEH 174
L DF + S E++ L+ +E D +G L D +EH
Sbjct: 367 LADFRDLTSWVTEMKALIN-ADELASDVAGAEALLDRHQEH 406
>gi|194595509 spectrin, alpha, non-erythrocytic 1 (alpha-fodrin)
isoform 1 [Homo sapiens]
Length = 2477
Score = 32.3 bits (72), Expect = 0.24
Identities = 31/101 (30%), Positives = 46/101 (45%), Gaps = 4/101 (3%)
Query: 77 LEGLINEWNLELEDQEKYFLLQATQVNAWDHTLIENGEMIRILHGEVNKVKLDQKRLEQE 136
LE + E + ++ L ATQ+ LI N E IR L E + D RL++
Sbjct: 307 LEDKVKALCAEADRLQQSHPLSATQIQVKREELITNWEQIRTLAAERHARLNDSYRLQRF 366
Query: 137 L-DF--ILSQQQELEFLLTYLEESTRDQSGLHYLQDADEEH 174
L DF + S E++ L+ +E D +G L D +EH
Sbjct: 367 LADFRDLTSWVTEMKALIN-ADELASDVAGAEALLDRHQEH 406
>gi|169202626 PREDICTED: similar to mucin 5, partial [Homo sapiens]
Length = 2013
Score = 32.3 bits (72), Expect = 0.24
Identities = 22/71 (30%), Positives = 34/71 (47%), Gaps = 3/71 (4%)
Query: 4 TSISNSLTSTAAIGLSFTTSTTTTATFTTNTTTTITSGFTVNQNQLLSRGFENL---VPY 60
T ++ S TST ++ +T+TT+ T TT+ T+ T + G N VP
Sbjct: 1881 TLVTTSTTSTPQTSTTYAHTTSTTSAPTARTTSAPTTRTTSASPASTTSGPGNTPSPVPT 1940
Query: 61 TSTVSVVATPV 71
TST+S T +
Sbjct: 1941 TSTISAPTTSI 1951
Score = 26.9 bits (58), Expect = 9.9
Identities = 16/38 (42%), Positives = 25/38 (65%), Gaps = 1/38 (2%)
Query: 4 TSISNS-LTSTAAIGLSFTTSTTTTATFTTNTTTTITS 40
TSI+++ TST + S TTS TT+T + T++T +S
Sbjct: 1949 TSITSAPTTSTTSAPTSSTTSAPTTSTTSAPTSSTTSS 1986
>gi|239757995 PREDICTED: similar to hCG1747327, partial [Homo
sapiens]
Length = 1064
Score = 32.0 bits (71), Expect = 0.31
Identities = 20/75 (26%), Positives = 39/75 (52%), Gaps = 4/75 (5%)
Query: 3 FTSISNSLTSTAAIGLSFTTSTTTTATFTTNTTTTITSGFTVNQNQLLSR----GFENLV 58
FT++ ++TST+ I + T++ T T+ TT + T T+ + + +LS E
Sbjct: 243 FTTLKTAVTSTSPITSTITSTNTVTSMTTTTSRPTATNTLSSLMSNILSSTPVPSTEMTT 302
Query: 59 PYTSTVSVVATPVMT 73
+T+ + ++T V T
Sbjct: 303 SHTTDTNPLSTLVTT 317
Score = 27.7 bits (60), Expect = 5.8
Identities = 13/53 (24%), Positives = 28/53 (52%)
Query: 21 TTSTTTTATFTTNTTTTITSGFTVNQNQLLSRGFENLVPYTSTVSVVATPVMT 73
T +T T+TFT ++++ +++ T + + ++ LV T+T S +T
Sbjct: 701 TAATDLTSTFTVSSSSAMSTSVTPSAPSIQNKEISTLVSTTTTTSPTERMTLT 753
Score = 27.3 bits (59), Expect = 7.6
Identities = 23/76 (30%), Positives = 40/76 (52%), Gaps = 10/76 (13%)
Query: 5 SISNSLTSTAAIGLSFT-----TSTTTTAT--FTTNTTTTITSGFTVNQNQLLSRGFENL 57
S++ ++TST + + T TS TTTA+ TTNT +++TS + + E +
Sbjct: 486 SLTTAMTSTTPVISAITPKTTVTSMTTTASGPTTTNTLSSLTSSIL---SSTPAPNTEVI 542
Query: 58 VPYTSTVSVVATPVMT 73
+T+T + +T V T
Sbjct: 543 TSHTTTTTPPSTLVTT 558
Score = 27.3 bits (59), Expect = 7.6
Identities = 22/77 (28%), Positives = 34/77 (44%), Gaps = 14/77 (18%)
Query: 11 TSTAAIGLSFTTSTTTTATFTTNTTTTITS---------GFTVNQNQLLSRGF-----EN 56
TST +++TS T+T T +T TT TS + L+++G N
Sbjct: 941 TSTPTSETTYSTSPTSTVTDSTTETTYSTSITGTLSTEISLPATTSSLITKGISMTSTRN 1000
Query: 57 LVPYTSTVSVVATPVMT 73
LV T+ + +TP T
Sbjct: 1001 LVTTTNENTSHSTPTFT 1017
>gi|239754269 PREDICTED: hypothetical protein [Homo sapiens]
Length = 1531
Score = 31.6 bits (70), Expect = 0.40
Identities = 24/70 (34%), Positives = 32/70 (45%), Gaps = 5/70 (7%)
Query: 5 SISNSLTSTAAIGLSFTTSTT-----TTATFTTNTTTTITSGFTVNQNQLLSRGFENLVP 59
S + S T+TA+I S TT+ + TT TT T TTITS + + G E
Sbjct: 987 STAGSETTTASIEGSETTTVSSTGSETTTVSTTGTETTITSTEGSETTTVTTAGSETTAV 1046
Query: 60 YTSTVSVVAT 69
YT+ T
Sbjct: 1047 YTTGSETTTT 1056
Score = 28.9 bits (63), Expect = 2.6
Identities = 20/49 (40%), Positives = 25/49 (51%), Gaps = 7/49 (14%)
Query: 4 TSISNSLTSTAAIGLSFTTS-------TTTTATFTTNTTTTITSGFTVN 45
TS S T+TA+ S TT+ TTT +T + TTT TSG N
Sbjct: 1176 TSTEGSETTTASTAGSETTTASTAGSETTTASTAGSETTTASTSGSETN 1224
Score = 28.5 bits (62), Expect = 3.4
Identities = 24/76 (31%), Positives = 34/76 (44%), Gaps = 6/76 (7%)
Query: 5 SISNSLTSTAAIGLSFTTSTTT-----TATFTTNTTTTITSGFTVNQNQLLSRGFENLVP 59
SI S T+ A+ S TT +T T FT N+ TTI S T ++ +S +P
Sbjct: 776 SIMGSETTMASTIGSETTKVSTASSKMTTVFTENSETTIAS-TTASETTTVSTAGSETIP 834
Query: 60 YTSTVSVVATPVMTYG 75
++ S T T G
Sbjct: 835 ASTAGSETTTTTSTEG 850
Score = 28.1 bits (61), Expect = 4.5
Identities = 21/72 (29%), Positives = 31/72 (43%), Gaps = 7/72 (9%)
Query: 4 TSISNSLTSTAAIGLSFTTSTTTTATFTTNTTTTITSGFTVNQNQLLSRGFENLVPYTST 63
TS + S T+T + T + TT +T ++ TT S + + G E + P ST
Sbjct: 137 TSTAGSETTTVS-----TVGSETTTAYTADSETTAASTTGSEMTTVFTAGSETITP--ST 189
Query: 64 VSVVATPVMTYG 75
T V T G
Sbjct: 190 AGSETTTVSTAG 201
Score = 28.1 bits (61), Expect = 4.5
Identities = 21/72 (29%), Positives = 35/72 (48%), Gaps = 3/72 (4%)
Query: 5 SISNSLTSTAAIGLSFTTSTTTTATFTTNTTTT---ITSGFTVNQNQLLSRGFENLVPYT 61
SI+ S T+TA+ S TT+ +T + TT+ +TT T+ T + ++ +
Sbjct: 726 SITGSETTTASTEGSETTTASTEGSETTSASTTGSETTTASTTSSETTMASIMGSETTMA 785
Query: 62 STVSVVATPVMT 73
ST+ T V T
Sbjct: 786 STIGSETTKVST 797
Score = 28.1 bits (61), Expect = 4.5
Identities = 18/45 (40%), Positives = 27/45 (60%), Gaps = 7/45 (15%)
Query: 3 FTSISNSLTSTAAIGLSFTTST------TTTATFTTNTTTTITSG 41
FT++S + T+ + IG TTS+ TTT+T + TTT T+G
Sbjct: 1147 FTTVSET-TTVSTIGSEATTSSAAGSEATTTSTEGSETTTASTAG 1190
Score = 27.3 bits (59), Expect = 7.6
Identities = 18/72 (25%), Positives = 32/72 (44%), Gaps = 7/72 (9%)
Query: 4 TSISNSLTSTAAIGLSFTTSTT-------TTATFTTNTTTTITSGFTVNQNQLLSRGFEN 56
T++S + + T + ++ T +T TT TT++ TT+TS + + G E
Sbjct: 95 TTVSTAGSETTTVSITGTETTMVSAMGSETTTNSTTSSETTVTSTAGSETTTVSTVGSET 154
Query: 57 LVPYTSTVSVVA 68
YT+ A
Sbjct: 155 TTAYTADSETTA 166
Score = 27.3 bits (59), Expect = 7.6
Identities = 24/72 (33%), Positives = 32/72 (44%), Gaps = 7/72 (9%)
Query: 4 TSISNSLTSTAAIGLSFTTSTTTTATFTTNTTTTITSGFTVNQNQLLSRGFENLVPYTST 63
TS S T+T S TT+ TT + TT T+T + TV+ + G E ST
Sbjct: 1026 TSTEGSETTTVTTAGSETTAVYTTGSETTTTSTEGSETTTVS-----TTGSETTT--AST 1078
Query: 64 VSVVATPVMTYG 75
+ T V T G
Sbjct: 1079 ADLETTTVSTSG 1090
Score = 26.9 bits (58), Expect = 9.9
Identities = 15/41 (36%), Positives = 24/41 (58%)
Query: 5 SISNSLTSTAAIGLSFTTSTTTTATFTTNTTTTITSGFTVN 45
S ++S +TA+ S TTS +TT + TT +TT + T +
Sbjct: 597 STADSENTTASTADSETTSASTTGSETTTASTTSSETTTAS 637
Score = 26.9 bits (58), Expect = 9.9
Identities = 22/71 (30%), Positives = 35/71 (49%), Gaps = 16/71 (22%)
Query: 6 ISNSLTSTAAIGLSFTTSTTTTATFTTNTTTT---ITSGFTVNQNQLLSRGFENLVPYTS 62
I+ S T+TA+ S T+ +TT++ TT +TT +T+ FT V T+
Sbjct: 1108 ITGSKTTTASTEGSEATTVSTTSSETTTASTTGSEMTTVFTT-------------VSETT 1154
Query: 63 TVSVVATPVMT 73
TVS + + T
Sbjct: 1155 TVSTIGSEATT 1165
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.313 0.127 0.346
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,762,168
Number of Sequences: 37866
Number of extensions: 237983
Number of successful extensions: 3788
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 75
Number of HSP's successfully gapped in prelim test: 58
Number of HSP's that attempted gapping in prelim test: 1229
Number of HSP's gapped (non-prelim): 1607
length of query: 184
length of database: 18,247,518
effective HSP length: 96
effective length of query: 88
effective length of database: 14,612,382
effective search space: 1285889616
effective search space used: 1285889616
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 58 (26.9 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.