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Search of human proteins with 22094079
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|22094079 thyroid hormone receptor interactor 3 [Homo
sapiens]
(155 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|22094079 thyroid hormone receptor interactor 3 [Homo sapiens] 320 4e-88
gi|20149643 zinc finger, HIT type 6 [Homo sapiens] 36 0.012
gi|7656936 zinc finger, HIT domain containing 2 [Homo sapiens] 36 0.012
gi|38045938 ring finger protein 144 [Homo sapiens] 32 0.22
gi|42518068 trans-golgi network protein 2 [Homo sapiens] 31 0.49
gi|5453617 zinc finger, HIT domain containing 1 [Homo sapiens] 31 0.49
gi|160948610 E3 ubiquitin-protein ligase UBR3 [Homo sapiens] 30 0.83
gi|13376064 zinc finger protein 408 [Homo sapiens] 30 0.83
gi|56550039 myeloid/lymphoid or mixed-lineage leukemia protein [... 29 1.9
gi|23397479 zinc finger protein 524 [Homo sapiens] 29 1.9
gi|89001105 zinc finger protein 571 [Homo sapiens] 28 2.4
gi|88759348 ring finger protein 219 [Homo sapiens] 28 3.2
gi|30260188 Golgi autoantigen, golgin subfamily a, 5 [Homo sapiens] 28 3.2
gi|67089160 promyelocytic leukemia protein isoform 11 [Homo sapi... 28 4.1
gi|67089157 promyelocytic leukemia protein isoform 2 [Homo sapiens] 28 4.1
gi|15451765 promyelocytic leukemia protein isoform 9 [Homo sapiens] 28 4.1
gi|67089154 promyelocytic leukemia protein isoform 8 [Homo sapiens] 28 4.1
gi|4505903 promyelocytic leukemia protein isoform 6 [Homo sapiens] 28 4.1
gi|15451775 promyelocytic leukemia protein isoform 7 [Homo sapiens] 28 4.1
gi|15451779 promyelocytic leukemia protein isoform 10 [Homo sapi... 28 4.1
gi|67089149 promyelocytic leukemia protein isoform 1 [Homo sapiens] 28 4.1
gi|109637788 promyelocytic leukemia protein isoform 5 [Homo sapi... 28 4.1
gi|28827795 chromatin modifying protein 4B [Homo sapiens] 28 4.1
gi|46359075 zinc finger protein 423 [Homo sapiens] 28 4.1
gi|194239731 eukaryotic translation elongation factor 1 delta is... 28 4.1
gi|194239727 eukaryotic translation elongation factor 1 delta is... 28 4.1
gi|194239725 eukaryotic translation elongation factor 1 delta is... 28 4.1
gi|194239723 eukaryotic translation elongation factor 1 delta is... 28 4.1
gi|25453472 eukaryotic translation elongation factor 1 delta iso... 28 4.1
gi|25453474 eukaryotic translation elongation factor 1 delta iso... 28 4.1
>gi|22094079 thyroid hormone receptor interactor 3 [Homo sapiens]
Length = 155
Score = 320 bits (819), Expect = 4e-88
Identities = 155/155 (100%), Positives = 155/155 (100%)
Query: 1 MASLKCSTVVCVICLEKPKYRCPACRVPYCSVVCFRKHKEQCNPETRPVEKKIRSALPTK 60
MASLKCSTVVCVICLEKPKYRCPACRVPYCSVVCFRKHKEQCNPETRPVEKKIRSALPTK
Sbjct: 1 MASLKCSTVVCVICLEKPKYRCPACRVPYCSVVCFRKHKEQCNPETRPVEKKIRSALPTK 60
Query: 61 TVKPVENKDDDDSIADFLNSDEEEDRVSLQNLKNLGESATLRSLLLNPHLRQLMVNLDQG 120
TVKPVENKDDDDSIADFLNSDEEEDRVSLQNLKNLGESATLRSLLLNPHLRQLMVNLDQG
Sbjct: 61 TVKPVENKDDDDSIADFLNSDEEEDRVSLQNLKNLGESATLRSLLLNPHLRQLMVNLDQG 120
Query: 121 EDKAKLMRAYMQEPLFVEFADCCLGIVEPSQNEES 155
EDKAKLMRAYMQEPLFVEFADCCLGIVEPSQNEES
Sbjct: 121 EDKAKLMRAYMQEPLFVEFADCCLGIVEPSQNEES 155
>gi|20149643 zinc finger, HIT type 6 [Homo sapiens]
Length = 470
Score = 36.2 bits (82), Expect = 0.012
Identities = 17/36 (47%), Positives = 21/36 (58%), Gaps = 3/36 (8%)
Query: 11 CVIC-LEKPKYRCPACRVPYCSVVCFRKHKEQ--CN 43
C C E+ KYRCP C CS+ C +KHK + CN
Sbjct: 220 CETCGTEEAKYRCPRCMRYSCSLPCVKKHKAELTCN 255
>gi|7656936 zinc finger, HIT domain containing 2 [Homo sapiens]
Length = 403
Score = 36.2 bits (82), Expect = 0.012
Identities = 11/24 (45%), Positives = 16/24 (66%)
Query: 15 LEKPKYRCPACRVPYCSVVCFRKH 38
++ +Y CP C PYCS+ C+R H
Sbjct: 15 VQPARYTCPRCNAPYCSLRCYRTH 38
>gi|38045938 ring finger protein 144 [Homo sapiens]
Length = 292
Score = 32.0 bits (71), Expect = 0.22
Identities = 18/54 (33%), Positives = 27/54 (50%), Gaps = 5/54 (9%)
Query: 21 RCPACRVPYCSVVCFRKHKEQCNPETRPVEKKIRSALPTKTVKPVENKDDDDSI 74
+C ACR+ +CS H Q PET P+ + LP +T + ++DD I
Sbjct: 134 QCKACRMEFCSTCKASWHPGQGCPETMPI-----TFLPGETSAAFKMEEDDAPI 182
>gi|42518068 trans-golgi network protein 2 [Homo sapiens]
Length = 437
Score = 30.8 bits (68), Expect = 0.49
Identities = 13/41 (31%), Positives = 27/41 (65%)
Query: 48 PVEKKIRSALPTKTVKPVENKDDDDSIADFLNSDEEEDRVS 88
P +++++S+ PT+ V+P E +DDD + EE++++S
Sbjct: 307 PPQEEVKSSEPTEDVEPKEAEDDDTGPEEGSPPKEEKEKMS 347
>gi|5453617 zinc finger, HIT domain containing 1 [Homo sapiens]
Length = 154
Score = 30.8 bits (68), Expect = 0.49
Identities = 11/30 (36%), Positives = 15/30 (50%)
Query: 11 CVICLEKPKYRCPACRVPYCSVVCFRKHKE 40
C +C Y C +C YC+V C H+E
Sbjct: 117 CAVCGFPSPYTCVSCGARYCTVRCLGTHQE 146
>gi|160948610 E3 ubiquitin-protein ligase UBR3 [Homo sapiens]
Length = 1888
Score = 30.0 bits (66), Expect = 0.83
Identities = 18/58 (31%), Positives = 29/58 (50%), Gaps = 1/58 (1%)
Query: 1 MASLKCSTVVCVICLEKPKYRCPACRVPYCSVV-CFRKHKEQCNPETRPVEKKIRSAL 57
M SL+ V+ ++K ++ CP CR SV+ C+ + NP RP K I+ +
Sbjct: 1339 MESLRNDQVLQGFSVDKGEFTCPLCRQFANSVLPCYPGSNVENNPWQRPSNKSIQDLI 1396
>gi|13376064 zinc finger protein 408 [Homo sapiens]
Length = 720
Score = 30.0 bits (66), Expect = 0.83
Identities = 16/48 (33%), Positives = 20/48 (41%)
Query: 15 LEKPKYRCPACRVPYCSVVCFRKHKEQCNPETRPVEKKIRSALPTKTV 62
LE YRCP C + Y R+H+ PE + SA TV
Sbjct: 602 LEDKPYRCPTCGMGYTLPQSLRRHQLSHRPEAPCSPPSVPSAASEPTV 649
>gi|56550039 myeloid/lymphoid or mixed-lineage leukemia protein [Homo
sapiens]
Length = 3969
Score = 28.9 bits (63), Expect = 1.9
Identities = 19/69 (27%), Positives = 30/69 (43%), Gaps = 11/69 (15%)
Query: 10 VCVICLEKPKY-----RCPACRVPYCSVVCFRKHKEQCNPETRPVEKKIRSALPTKTVKP 64
VC CL+KPK+ + C++ C + + K + + V+KK K K
Sbjct: 1169 VCTNCLDKPKFGGRNIKKQCCKMRKCQNLQWMPSKAYLQKQAKAVKKK------EKKSKT 1222
Query: 65 VENKDDDDS 73
E KD +S
Sbjct: 1223 SEKKDSKES 1231
>gi|23397479 zinc finger protein 524 [Homo sapiens]
Length = 264
Score = 28.9 bits (63), Expect = 1.9
Identities = 12/34 (35%), Positives = 20/34 (58%), Gaps = 1/34 (2%)
Query: 16 EKPKYRCPACRVPYCSVVCFRKHKEQCNPETRPV 49
E+P Y+CP CR+ + R+H ++ +PE V
Sbjct: 195 ERP-YQCPICRLRFTEANTLRRHAKRKHPEAMGV 227
>gi|89001105 zinc finger protein 571 [Homo sapiens]
Length = 609
Score = 28.5 bits (62), Expect = 2.4
Identities = 16/54 (29%), Positives = 25/54 (46%)
Query: 7 STVVCVICLEKPKYRCPACRVPYCSVVCFRKHKEQCNPETRPVEKKIRSALPTK 60
ST +I ++ Y+C CR + + C +H+E N E KK R+ K
Sbjct: 126 STFHRIIPTKEKLYKCKECRQGFSYLSCLIQHEENHNIEKCSEVKKHRNTFSKK 179
>gi|88759348 ring finger protein 219 [Homo sapiens]
Length = 726
Score = 28.1 bits (61), Expect = 3.2
Identities = 33/118 (27%), Positives = 54/118 (45%), Gaps = 14/118 (11%)
Query: 9 VVCVICLE---KPKYRCPACRVPYCSVVCFRKHKEQCNPETRPVEKKIRSALPTKTVKPV 65
V C IC++ K +CPACRVP ++ + + +R L KT +
Sbjct: 36 VFCSICIDLWLKNNSQCPACRVPITPENPCKEIIGGTSESEPMLSHTVRKHL-RKTRLEL 94
Query: 66 ENKDDDDSIADFLNSDEEEDRVSLQNLKNLGESATLRSLLLNPHLRQLMVNLDQGEDK 123
+K+ +D I D L + EE KNL + +++ +L+P +V +Q EDK
Sbjct: 95 LHKEYEDEI-DCLQKEVEE-----LKSKNLSLESQIKT-ILDP---LTLVQGNQNEDK 142
>gi|30260188 Golgi autoantigen, golgin subfamily a, 5 [Homo sapiens]
Length = 731
Score = 28.1 bits (61), Expect = 3.2
Identities = 18/68 (26%), Positives = 30/68 (44%), Gaps = 16/68 (23%)
Query: 52 KIRSALPTKTVKPVEN----------------KDDDDSIADFLNSDEEEDRVSLQNLKNL 95
K+ S P + PVEN + DD+ + DFLNS ++E ++ K
Sbjct: 85 KVGSRTPVEASHPVENASVPRPSSHFVRRKKSEPDDELLFDFLNSSQKEPTGRVEIRKEK 144
Query: 96 GESATLRS 103
G++ +S
Sbjct: 145 GKTPVFQS 152
>gi|67089160 promyelocytic leukemia protein isoform 11 [Homo
sapiens]
Length = 781
Score = 27.7 bits (60), Expect = 4.1
Identities = 10/26 (38%), Positives = 14/26 (53%)
Query: 4 LKCSTVVCVICLEKPKYRCPACRVPY 29
L C +C CLE +CP C+ P+
Sbjct: 70 LPCLHTLCSGCLEASGMQCPICQAPW 95
>gi|67089157 promyelocytic leukemia protein isoform 2 [Homo
sapiens]
Length = 611
Score = 27.7 bits (60), Expect = 4.1
Identities = 10/26 (38%), Positives = 14/26 (53%)
Query: 4 LKCSTVVCVICLEKPKYRCPACRVPY 29
L C +C CLE +CP C+ P+
Sbjct: 70 LPCLHTLCSGCLEASGMQCPICQAPW 95
>gi|15451765 promyelocytic leukemia protein isoform 9 [Homo
sapiens]
Length = 829
Score = 27.7 bits (60), Expect = 4.1
Identities = 10/26 (38%), Positives = 14/26 (53%)
Query: 4 LKCSTVVCVICLEKPKYRCPACRVPY 29
L C +C CLE +CP C+ P+
Sbjct: 70 LPCLHTLCSGCLEASGMQCPICQAPW 95
>gi|67089154 promyelocytic leukemia protein isoform 8 [Homo
sapiens]
Length = 435
Score = 27.7 bits (60), Expect = 4.1
Identities = 10/26 (38%), Positives = 14/26 (53%)
Query: 4 LKCSTVVCVICLEKPKYRCPACRVPY 29
L C +C CLE +CP C+ P+
Sbjct: 70 LPCLHTLCSGCLEASGMQCPICQAPW 95
>gi|4505903 promyelocytic leukemia protein isoform 6 [Homo
sapiens]
Length = 633
Score = 27.7 bits (60), Expect = 4.1
Identities = 10/26 (38%), Positives = 14/26 (53%)
Query: 4 LKCSTVVCVICLEKPKYRCPACRVPY 29
L C +C CLE +CP C+ P+
Sbjct: 70 LPCLHTLCSGCLEASGMQCPICQAPW 95
>gi|15451775 promyelocytic leukemia protein isoform 7 [Homo
sapiens]
Length = 423
Score = 27.7 bits (60), Expect = 4.1
Identities = 10/26 (38%), Positives = 14/26 (53%)
Query: 4 LKCSTVVCVICLEKPKYRCPACRVPY 29
L C +C CLE +CP C+ P+
Sbjct: 70 LPCLHTLCSGCLEASGMQCPICQAPW 95
>gi|15451779 promyelocytic leukemia protein isoform 10 [Homo
sapiens]
Length = 585
Score = 27.7 bits (60), Expect = 4.1
Identities = 10/26 (38%), Positives = 14/26 (53%)
Query: 4 LKCSTVVCVICLEKPKYRCPACRVPY 29
L C +C CLE +CP C+ P+
Sbjct: 70 LPCLHTLCSGCLEASGMQCPICQAPW 95
>gi|67089149 promyelocytic leukemia protein isoform 1 [Homo
sapiens]
Length = 882
Score = 27.7 bits (60), Expect = 4.1
Identities = 10/26 (38%), Positives = 14/26 (53%)
Query: 4 LKCSTVVCVICLEKPKYRCPACRVPY 29
L C +C CLE +CP C+ P+
Sbjct: 70 LPCLHTLCSGCLEASGMQCPICQAPW 95
>gi|109637788 promyelocytic leukemia protein isoform 5 [Homo
sapiens]
Length = 560
Score = 27.7 bits (60), Expect = 4.1
Identities = 10/26 (38%), Positives = 14/26 (53%)
Query: 4 LKCSTVVCVICLEKPKYRCPACRVPY 29
L C +C CLE +CP C+ P+
Sbjct: 70 LPCLHTLCSGCLEASGMQCPICQAPW 95
>gi|28827795 chromatin modifying protein 4B [Homo sapiens]
Length = 224
Score = 27.7 bits (60), Expect = 4.1
Identities = 14/32 (43%), Positives = 17/32 (53%)
Query: 40 EQCNPETRPVEKKIRSALPTKTVKPVENKDDD 71
E PET P+ ALP+K K E +DDD
Sbjct: 182 EISGPETVPLPNVPSIALPSKPAKKKEEEDDD 213
>gi|46359075 zinc finger protein 423 [Homo sapiens]
Length = 1284
Score = 27.7 bits (60), Expect = 4.1
Identities = 32/128 (25%), Positives = 47/128 (36%), Gaps = 11/128 (8%)
Query: 11 CVICLEKPKYRCPACRVPYCSVVCFRKH-KEQCNPETRPVEKKIRSALPTKTVKPVENKD 69
C I KY C C + +++ KH +E+ E + +P K E D
Sbjct: 798 CHITTHSKKYNCKFCSKAFHAIILLEKHLREKHCVFDAATENGTANGVPPMATKKAEPAD 857
Query: 70 DDDSI---ADFLNSDE-EEDRVS----LQNLKNLGESATLRSLLLNPHLRQLMVNLDQGE 121
+ + NS E ED V + G + T+ LL N LR N+ GE
Sbjct: 858 LQGMLLKNPEAPNSHEASEDDVDASEPMYGCDICGAAYTMEVLLQNHRLRD--HNIRPGE 915
Query: 122 DKAKLMRA 129
D +A
Sbjct: 916 DDGSRKKA 923
>gi|194239731 eukaryotic translation elongation factor 1 delta
isoform 2 [Homo sapiens]
Length = 281
Score = 27.7 bits (60), Expect = 4.1
Identities = 17/58 (29%), Positives = 28/58 (48%), Gaps = 7/58 (12%)
Query: 40 EQCNPETRPVEKKIRSALPTKTVKPVENK-------DDDDSIADFLNSDEEEDRVSLQ 90
E+ +P R + + P + V+P K D+DD I F + +EEED+ + Q
Sbjct: 116 EKSSPGHRATAPQTQHVSPMRQVEPPAKKPATPAEDDEDDDIDLFGSDNEEEDKEAAQ 173
>gi|194239727 eukaryotic translation elongation factor 1 delta
isoform 2 [Homo sapiens]
Length = 281
Score = 27.7 bits (60), Expect = 4.1
Identities = 17/58 (29%), Positives = 28/58 (48%), Gaps = 7/58 (12%)
Query: 40 EQCNPETRPVEKKIRSALPTKTVKPVENK-------DDDDSIADFLNSDEEEDRVSLQ 90
E+ +P R + + P + V+P K D+DD I F + +EEED+ + Q
Sbjct: 116 EKSSPGHRATAPQTQHVSPMRQVEPPAKKPATPAEDDEDDDIDLFGSDNEEEDKEAAQ 173
>gi|194239725 eukaryotic translation elongation factor 1 delta
isoform 3 [Homo sapiens]
Length = 646
Score = 27.7 bits (60), Expect = 4.1
Identities = 17/58 (29%), Positives = 28/58 (48%), Gaps = 7/58 (12%)
Query: 40 EQCNPETRPVEKKIRSALPTKTVKPVENK-------DDDDSIADFLNSDEEEDRVSLQ 90
E+ +P R + + P + V+P K D+DD I F + +EEED+ + Q
Sbjct: 481 EKSSPGHRATAPQTQHVSPMRQVEPPAKKPATPAEDDEDDDIDLFGSDNEEEDKEAAQ 538
>gi|194239723 eukaryotic translation elongation factor 1 delta
isoform 1 [Homo sapiens]
Length = 647
Score = 27.7 bits (60), Expect = 4.1
Identities = 17/58 (29%), Positives = 28/58 (48%), Gaps = 7/58 (12%)
Query: 40 EQCNPETRPVEKKIRSALPTKTVKPVENK-------DDDDSIADFLNSDEEEDRVSLQ 90
E+ +P R + + P + V+P K D+DD I F + +EEED+ + Q
Sbjct: 482 EKSSPGHRATAPQTQHVSPMRQVEPPAKKPATPAEDDEDDDIDLFGSDNEEEDKEAAQ 539
>gi|25453472 eukaryotic translation elongation factor 1 delta
isoform 2 [Homo sapiens]
Length = 281
Score = 27.7 bits (60), Expect = 4.1
Identities = 17/58 (29%), Positives = 28/58 (48%), Gaps = 7/58 (12%)
Query: 40 EQCNPETRPVEKKIRSALPTKTVKPVENK-------DDDDSIADFLNSDEEEDRVSLQ 90
E+ +P R + + P + V+P K D+DD I F + +EEED+ + Q
Sbjct: 116 EKSSPGHRATAPQTQHVSPMRQVEPPAKKPATPAEDDEDDDIDLFGSDNEEEDKEAAQ 173
>gi|25453474 eukaryotic translation elongation factor 1 delta
isoform 1 [Homo sapiens]
Length = 647
Score = 27.7 bits (60), Expect = 4.1
Identities = 17/58 (29%), Positives = 28/58 (48%), Gaps = 7/58 (12%)
Query: 40 EQCNPETRPVEKKIRSALPTKTVKPVENK-------DDDDSIADFLNSDEEEDRVSLQ 90
E+ +P R + + P + V+P K D+DD I F + +EEED+ + Q
Sbjct: 482 EKSSPGHRATAPQTQHVSPMRQVEPPAKKPATPAEDDEDDDIDLFGSDNEEEDKEAAQ 539
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.318 0.133 0.398
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,312,887
Number of Sequences: 37866
Number of extensions: 288048
Number of successful extensions: 1565
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 41
Number of HSP's successfully gapped in prelim test: 24
Number of HSP's that attempted gapping in prelim test: 1494
Number of HSP's gapped (non-prelim): 90
length of query: 155
length of database: 18,247,518
effective HSP length: 93
effective length of query: 62
effective length of database: 14,725,980
effective search space: 913010760
effective search space used: 913010760
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 57 (26.6 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.