Guide to the Human Genome
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Search of human proteins with 22094079

BLASTP 2.2.11 [Jun-05-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|22094079 thyroid hormone receptor interactor 3 [Homo
sapiens]
         (155 letters)

Database: hs.faa 
           37,866 sequences; 18,247,518 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|22094079 thyroid hormone receptor interactor 3 [Homo sapiens]      320   4e-88
gi|20149643 zinc finger, HIT type 6 [Homo sapiens]                     36   0.012
gi|7656936 zinc finger, HIT domain containing 2 [Homo sapiens]         36   0.012
gi|38045938 ring finger protein 144 [Homo sapiens]                     32   0.22 
gi|42518068 trans-golgi network protein 2 [Homo sapiens]               31   0.49 
gi|5453617 zinc finger, HIT domain containing 1 [Homo sapiens]         31   0.49 
gi|160948610 E3 ubiquitin-protein ligase UBR3 [Homo sapiens]           30   0.83 
gi|13376064 zinc finger protein 408 [Homo sapiens]                     30   0.83 
gi|56550039 myeloid/lymphoid or mixed-lineage leukemia protein [...    29   1.9  
gi|23397479 zinc finger protein 524 [Homo sapiens]                     29   1.9  
gi|89001105 zinc finger protein 571 [Homo sapiens]                     28   2.4  
gi|88759348 ring finger protein 219 [Homo sapiens]                     28   3.2  
gi|30260188 Golgi autoantigen, golgin subfamily a, 5 [Homo sapiens]    28   3.2  
gi|67089160 promyelocytic leukemia protein isoform 11 [Homo sapi...    28   4.1  
gi|67089157 promyelocytic leukemia protein isoform 2 [Homo sapiens]    28   4.1  
gi|15451765 promyelocytic leukemia protein isoform 9 [Homo sapiens]    28   4.1  
gi|67089154 promyelocytic leukemia protein isoform 8 [Homo sapiens]    28   4.1  
gi|4505903 promyelocytic leukemia protein isoform 6 [Homo sapiens]     28   4.1  
gi|15451775 promyelocytic leukemia protein isoform 7 [Homo sapiens]    28   4.1  
gi|15451779 promyelocytic leukemia protein isoform 10 [Homo sapi...    28   4.1  
gi|67089149 promyelocytic leukemia protein isoform 1 [Homo sapiens]    28   4.1  
gi|109637788 promyelocytic leukemia protein isoform 5 [Homo sapi...    28   4.1  
gi|28827795 chromatin modifying protein 4B [Homo sapiens]              28   4.1  
gi|46359075 zinc finger protein 423 [Homo sapiens]                     28   4.1  
gi|194239731 eukaryotic translation elongation factor 1 delta is...    28   4.1  
gi|194239727 eukaryotic translation elongation factor 1 delta is...    28   4.1  
gi|194239725 eukaryotic translation elongation factor 1 delta is...    28   4.1  
gi|194239723 eukaryotic translation elongation factor 1 delta is...    28   4.1  
gi|25453472 eukaryotic translation elongation factor 1 delta iso...    28   4.1  
gi|25453474 eukaryotic translation elongation factor 1 delta iso...    28   4.1  

>gi|22094079 thyroid hormone receptor interactor 3 [Homo sapiens]
          Length = 155

 Score =  320 bits (819), Expect = 4e-88
 Identities = 155/155 (100%), Positives = 155/155 (100%)

Query: 1   MASLKCSTVVCVICLEKPKYRCPACRVPYCSVVCFRKHKEQCNPETRPVEKKIRSALPTK 60
           MASLKCSTVVCVICLEKPKYRCPACRVPYCSVVCFRKHKEQCNPETRPVEKKIRSALPTK
Sbjct: 1   MASLKCSTVVCVICLEKPKYRCPACRVPYCSVVCFRKHKEQCNPETRPVEKKIRSALPTK 60

Query: 61  TVKPVENKDDDDSIADFLNSDEEEDRVSLQNLKNLGESATLRSLLLNPHLRQLMVNLDQG 120
           TVKPVENKDDDDSIADFLNSDEEEDRVSLQNLKNLGESATLRSLLLNPHLRQLMVNLDQG
Sbjct: 61  TVKPVENKDDDDSIADFLNSDEEEDRVSLQNLKNLGESATLRSLLLNPHLRQLMVNLDQG 120

Query: 121 EDKAKLMRAYMQEPLFVEFADCCLGIVEPSQNEES 155
           EDKAKLMRAYMQEPLFVEFADCCLGIVEPSQNEES
Sbjct: 121 EDKAKLMRAYMQEPLFVEFADCCLGIVEPSQNEES 155


>gi|20149643 zinc finger, HIT type 6 [Homo sapiens]
          Length = 470

 Score = 36.2 bits (82), Expect = 0.012
 Identities = 17/36 (47%), Positives = 21/36 (58%), Gaps = 3/36 (8%)

Query: 11  CVIC-LEKPKYRCPACRVPYCSVVCFRKHKEQ--CN 43
           C  C  E+ KYRCP C    CS+ C +KHK +  CN
Sbjct: 220 CETCGTEEAKYRCPRCMRYSCSLPCVKKHKAELTCN 255


>gi|7656936 zinc finger, HIT domain containing 2 [Homo sapiens]
          Length = 403

 Score = 36.2 bits (82), Expect = 0.012
 Identities = 11/24 (45%), Positives = 16/24 (66%)

Query: 15 LEKPKYRCPACRVPYCSVVCFRKH 38
          ++  +Y CP C  PYCS+ C+R H
Sbjct: 15 VQPARYTCPRCNAPYCSLRCYRTH 38


>gi|38045938 ring finger protein 144 [Homo sapiens]
          Length = 292

 Score = 32.0 bits (71), Expect = 0.22
 Identities = 18/54 (33%), Positives = 27/54 (50%), Gaps = 5/54 (9%)

Query: 21  RCPACRVPYCSVVCFRKHKEQCNPETRPVEKKIRSALPTKTVKPVENKDDDDSI 74
           +C ACR+ +CS      H  Q  PET P+     + LP +T    + ++DD  I
Sbjct: 134 QCKACRMEFCSTCKASWHPGQGCPETMPI-----TFLPGETSAAFKMEEDDAPI 182


>gi|42518068 trans-golgi network protein 2 [Homo sapiens]
          Length = 437

 Score = 30.8 bits (68), Expect = 0.49
 Identities = 13/41 (31%), Positives = 27/41 (65%)

Query: 48  PVEKKIRSALPTKTVKPVENKDDDDSIADFLNSDEEEDRVS 88
           P +++++S+ PT+ V+P E +DDD    +     EE++++S
Sbjct: 307 PPQEEVKSSEPTEDVEPKEAEDDDTGPEEGSPPKEEKEKMS 347


>gi|5453617 zinc finger, HIT domain containing 1 [Homo sapiens]
          Length = 154

 Score = 30.8 bits (68), Expect = 0.49
 Identities = 11/30 (36%), Positives = 15/30 (50%)

Query: 11  CVICLEKPKYRCPACRVPYCSVVCFRKHKE 40
           C +C     Y C +C   YC+V C   H+E
Sbjct: 117 CAVCGFPSPYTCVSCGARYCTVRCLGTHQE 146


>gi|160948610 E3 ubiquitin-protein ligase UBR3 [Homo sapiens]
          Length = 1888

 Score = 30.0 bits (66), Expect = 0.83
 Identities = 18/58 (31%), Positives = 29/58 (50%), Gaps = 1/58 (1%)

Query: 1    MASLKCSTVVCVICLEKPKYRCPACRVPYCSVV-CFRKHKEQCNPETRPVEKKIRSAL 57
            M SL+   V+    ++K ++ CP CR    SV+ C+     + NP  RP  K I+  +
Sbjct: 1339 MESLRNDQVLQGFSVDKGEFTCPLCRQFANSVLPCYPGSNVENNPWQRPSNKSIQDLI 1396


>gi|13376064 zinc finger protein 408 [Homo sapiens]
          Length = 720

 Score = 30.0 bits (66), Expect = 0.83
 Identities = 16/48 (33%), Positives = 20/48 (41%)

Query: 15  LEKPKYRCPACRVPYCSVVCFRKHKEQCNPETRPVEKKIRSALPTKTV 62
           LE   YRCP C + Y      R+H+    PE       + SA    TV
Sbjct: 602 LEDKPYRCPTCGMGYTLPQSLRRHQLSHRPEAPCSPPSVPSAASEPTV 649


>gi|56550039 myeloid/lymphoid or mixed-lineage leukemia protein [Homo
            sapiens]
          Length = 3969

 Score = 28.9 bits (63), Expect = 1.9
 Identities = 19/69 (27%), Positives = 30/69 (43%), Gaps = 11/69 (15%)

Query: 10   VCVICLEKPKY-----RCPACRVPYCSVVCFRKHKEQCNPETRPVEKKIRSALPTKTVKP 64
            VC  CL+KPK+     +   C++  C  + +   K     + + V+KK       K  K 
Sbjct: 1169 VCTNCLDKPKFGGRNIKKQCCKMRKCQNLQWMPSKAYLQKQAKAVKKK------EKKSKT 1222

Query: 65   VENKDDDDS 73
             E KD  +S
Sbjct: 1223 SEKKDSKES 1231


>gi|23397479 zinc finger protein 524 [Homo sapiens]
          Length = 264

 Score = 28.9 bits (63), Expect = 1.9
 Identities = 12/34 (35%), Positives = 20/34 (58%), Gaps = 1/34 (2%)

Query: 16  EKPKYRCPACRVPYCSVVCFRKHKEQCNPETRPV 49
           E+P Y+CP CR+ +      R+H ++ +PE   V
Sbjct: 195 ERP-YQCPICRLRFTEANTLRRHAKRKHPEAMGV 227


>gi|89001105 zinc finger protein 571 [Homo sapiens]
          Length = 609

 Score = 28.5 bits (62), Expect = 2.4
 Identities = 16/54 (29%), Positives = 25/54 (46%)

Query: 7   STVVCVICLEKPKYRCPACRVPYCSVVCFRKHKEQCNPETRPVEKKIRSALPTK 60
           ST   +I  ++  Y+C  CR  +  + C  +H+E  N E     KK R+    K
Sbjct: 126 STFHRIIPTKEKLYKCKECRQGFSYLSCLIQHEENHNIEKCSEVKKHRNTFSKK 179


>gi|88759348 ring finger protein 219 [Homo sapiens]
          Length = 726

 Score = 28.1 bits (61), Expect = 3.2
 Identities = 33/118 (27%), Positives = 54/118 (45%), Gaps = 14/118 (11%)

Query: 9   VVCVICLE---KPKYRCPACRVPYCSVVCFRKHKEQCNPETRPVEKKIRSALPTKTVKPV 65
           V C IC++   K   +CPACRVP       ++     +     +   +R  L  KT   +
Sbjct: 36  VFCSICIDLWLKNNSQCPACRVPITPENPCKEIIGGTSESEPMLSHTVRKHL-RKTRLEL 94

Query: 66  ENKDDDDSIADFLNSDEEEDRVSLQNLKNLGESATLRSLLLNPHLRQLMVNLDQGEDK 123
            +K+ +D I D L  + EE        KNL   + +++ +L+P     +V  +Q EDK
Sbjct: 95  LHKEYEDEI-DCLQKEVEE-----LKSKNLSLESQIKT-ILDP---LTLVQGNQNEDK 142


>gi|30260188 Golgi autoantigen, golgin subfamily a, 5 [Homo sapiens]
          Length = 731

 Score = 28.1 bits (61), Expect = 3.2
 Identities = 18/68 (26%), Positives = 30/68 (44%), Gaps = 16/68 (23%)

Query: 52  KIRSALPTKTVKPVEN----------------KDDDDSIADFLNSDEEEDRVSLQNLKNL 95
           K+ S  P +   PVEN                + DD+ + DFLNS ++E    ++  K  
Sbjct: 85  KVGSRTPVEASHPVENASVPRPSSHFVRRKKSEPDDELLFDFLNSSQKEPTGRVEIRKEK 144

Query: 96  GESATLRS 103
           G++   +S
Sbjct: 145 GKTPVFQS 152


>gi|67089160 promyelocytic leukemia protein isoform 11 [Homo
          sapiens]
          Length = 781

 Score = 27.7 bits (60), Expect = 4.1
 Identities = 10/26 (38%), Positives = 14/26 (53%)

Query: 4  LKCSTVVCVICLEKPKYRCPACRVPY 29
          L C   +C  CLE    +CP C+ P+
Sbjct: 70 LPCLHTLCSGCLEASGMQCPICQAPW 95


>gi|67089157 promyelocytic leukemia protein isoform 2 [Homo
          sapiens]
          Length = 611

 Score = 27.7 bits (60), Expect = 4.1
 Identities = 10/26 (38%), Positives = 14/26 (53%)

Query: 4  LKCSTVVCVICLEKPKYRCPACRVPY 29
          L C   +C  CLE    +CP C+ P+
Sbjct: 70 LPCLHTLCSGCLEASGMQCPICQAPW 95


>gi|15451765 promyelocytic leukemia protein isoform 9 [Homo
          sapiens]
          Length = 829

 Score = 27.7 bits (60), Expect = 4.1
 Identities = 10/26 (38%), Positives = 14/26 (53%)

Query: 4  LKCSTVVCVICLEKPKYRCPACRVPY 29
          L C   +C  CLE    +CP C+ P+
Sbjct: 70 LPCLHTLCSGCLEASGMQCPICQAPW 95


>gi|67089154 promyelocytic leukemia protein isoform 8 [Homo
          sapiens]
          Length = 435

 Score = 27.7 bits (60), Expect = 4.1
 Identities = 10/26 (38%), Positives = 14/26 (53%)

Query: 4  LKCSTVVCVICLEKPKYRCPACRVPY 29
          L C   +C  CLE    +CP C+ P+
Sbjct: 70 LPCLHTLCSGCLEASGMQCPICQAPW 95


>gi|4505903 promyelocytic leukemia protein isoform 6 [Homo
          sapiens]
          Length = 633

 Score = 27.7 bits (60), Expect = 4.1
 Identities = 10/26 (38%), Positives = 14/26 (53%)

Query: 4  LKCSTVVCVICLEKPKYRCPACRVPY 29
          L C   +C  CLE    +CP C+ P+
Sbjct: 70 LPCLHTLCSGCLEASGMQCPICQAPW 95


>gi|15451775 promyelocytic leukemia protein isoform 7 [Homo
          sapiens]
          Length = 423

 Score = 27.7 bits (60), Expect = 4.1
 Identities = 10/26 (38%), Positives = 14/26 (53%)

Query: 4  LKCSTVVCVICLEKPKYRCPACRVPY 29
          L C   +C  CLE    +CP C+ P+
Sbjct: 70 LPCLHTLCSGCLEASGMQCPICQAPW 95


>gi|15451779 promyelocytic leukemia protein isoform 10 [Homo
          sapiens]
          Length = 585

 Score = 27.7 bits (60), Expect = 4.1
 Identities = 10/26 (38%), Positives = 14/26 (53%)

Query: 4  LKCSTVVCVICLEKPKYRCPACRVPY 29
          L C   +C  CLE    +CP C+ P+
Sbjct: 70 LPCLHTLCSGCLEASGMQCPICQAPW 95


>gi|67089149 promyelocytic leukemia protein isoform 1 [Homo
          sapiens]
          Length = 882

 Score = 27.7 bits (60), Expect = 4.1
 Identities = 10/26 (38%), Positives = 14/26 (53%)

Query: 4  LKCSTVVCVICLEKPKYRCPACRVPY 29
          L C   +C  CLE    +CP C+ P+
Sbjct: 70 LPCLHTLCSGCLEASGMQCPICQAPW 95


>gi|109637788 promyelocytic leukemia protein isoform 5 [Homo
          sapiens]
          Length = 560

 Score = 27.7 bits (60), Expect = 4.1
 Identities = 10/26 (38%), Positives = 14/26 (53%)

Query: 4  LKCSTVVCVICLEKPKYRCPACRVPY 29
          L C   +C  CLE    +CP C+ P+
Sbjct: 70 LPCLHTLCSGCLEASGMQCPICQAPW 95


>gi|28827795 chromatin modifying protein 4B [Homo sapiens]
          Length = 224

 Score = 27.7 bits (60), Expect = 4.1
 Identities = 14/32 (43%), Positives = 17/32 (53%)

Query: 40  EQCNPETRPVEKKIRSALPTKTVKPVENKDDD 71
           E   PET P+      ALP+K  K  E +DDD
Sbjct: 182 EISGPETVPLPNVPSIALPSKPAKKKEEEDDD 213


>gi|46359075 zinc finger protein 423 [Homo sapiens]
          Length = 1284

 Score = 27.7 bits (60), Expect = 4.1
 Identities = 32/128 (25%), Positives = 47/128 (36%), Gaps = 11/128 (8%)

Query: 11  CVICLEKPKYRCPACRVPYCSVVCFRKH-KEQCNPETRPVEKKIRSALPTKTVKPVENKD 69
           C I     KY C  C   + +++   KH +E+        E    + +P    K  E  D
Sbjct: 798 CHITTHSKKYNCKFCSKAFHAIILLEKHLREKHCVFDAATENGTANGVPPMATKKAEPAD 857

Query: 70  DDDSI---ADFLNSDE-EEDRVS----LQNLKNLGESATLRSLLLNPHLRQLMVNLDQGE 121
               +    +  NS E  ED V     +      G + T+  LL N  LR    N+  GE
Sbjct: 858 LQGMLLKNPEAPNSHEASEDDVDASEPMYGCDICGAAYTMEVLLQNHRLRD--HNIRPGE 915

Query: 122 DKAKLMRA 129
           D     +A
Sbjct: 916 DDGSRKKA 923


>gi|194239731 eukaryotic translation elongation factor 1 delta
           isoform 2 [Homo sapiens]
          Length = 281

 Score = 27.7 bits (60), Expect = 4.1
 Identities = 17/58 (29%), Positives = 28/58 (48%), Gaps = 7/58 (12%)

Query: 40  EQCNPETRPVEKKIRSALPTKTVKPVENK-------DDDDSIADFLNSDEEEDRVSLQ 90
           E+ +P  R    + +   P + V+P   K       D+DD I  F + +EEED+ + Q
Sbjct: 116 EKSSPGHRATAPQTQHVSPMRQVEPPAKKPATPAEDDEDDDIDLFGSDNEEEDKEAAQ 173


>gi|194239727 eukaryotic translation elongation factor 1 delta
           isoform 2 [Homo sapiens]
          Length = 281

 Score = 27.7 bits (60), Expect = 4.1
 Identities = 17/58 (29%), Positives = 28/58 (48%), Gaps = 7/58 (12%)

Query: 40  EQCNPETRPVEKKIRSALPTKTVKPVENK-------DDDDSIADFLNSDEEEDRVSLQ 90
           E+ +P  R    + +   P + V+P   K       D+DD I  F + +EEED+ + Q
Sbjct: 116 EKSSPGHRATAPQTQHVSPMRQVEPPAKKPATPAEDDEDDDIDLFGSDNEEEDKEAAQ 173


>gi|194239725 eukaryotic translation elongation factor 1 delta
           isoform 3 [Homo sapiens]
          Length = 646

 Score = 27.7 bits (60), Expect = 4.1
 Identities = 17/58 (29%), Positives = 28/58 (48%), Gaps = 7/58 (12%)

Query: 40  EQCNPETRPVEKKIRSALPTKTVKPVENK-------DDDDSIADFLNSDEEEDRVSLQ 90
           E+ +P  R    + +   P + V+P   K       D+DD I  F + +EEED+ + Q
Sbjct: 481 EKSSPGHRATAPQTQHVSPMRQVEPPAKKPATPAEDDEDDDIDLFGSDNEEEDKEAAQ 538


>gi|194239723 eukaryotic translation elongation factor 1 delta
           isoform 1 [Homo sapiens]
          Length = 647

 Score = 27.7 bits (60), Expect = 4.1
 Identities = 17/58 (29%), Positives = 28/58 (48%), Gaps = 7/58 (12%)

Query: 40  EQCNPETRPVEKKIRSALPTKTVKPVENK-------DDDDSIADFLNSDEEEDRVSLQ 90
           E+ +P  R    + +   P + V+P   K       D+DD I  F + +EEED+ + Q
Sbjct: 482 EKSSPGHRATAPQTQHVSPMRQVEPPAKKPATPAEDDEDDDIDLFGSDNEEEDKEAAQ 539


>gi|25453472 eukaryotic translation elongation factor 1 delta
           isoform 2 [Homo sapiens]
          Length = 281

 Score = 27.7 bits (60), Expect = 4.1
 Identities = 17/58 (29%), Positives = 28/58 (48%), Gaps = 7/58 (12%)

Query: 40  EQCNPETRPVEKKIRSALPTKTVKPVENK-------DDDDSIADFLNSDEEEDRVSLQ 90
           E+ +P  R    + +   P + V+P   K       D+DD I  F + +EEED+ + Q
Sbjct: 116 EKSSPGHRATAPQTQHVSPMRQVEPPAKKPATPAEDDEDDDIDLFGSDNEEEDKEAAQ 173


>gi|25453474 eukaryotic translation elongation factor 1 delta
           isoform 1 [Homo sapiens]
          Length = 647

 Score = 27.7 bits (60), Expect = 4.1
 Identities = 17/58 (29%), Positives = 28/58 (48%), Gaps = 7/58 (12%)

Query: 40  EQCNPETRPVEKKIRSALPTKTVKPVENK-------DDDDSIADFLNSDEEEDRVSLQ 90
           E+ +P  R    + +   P + V+P   K       D+DD I  F + +EEED+ + Q
Sbjct: 482 EKSSPGHRATAPQTQHVSPMRQVEPPAKKPATPAEDDEDDDIDLFGSDNEEEDKEAAQ 539


  Database: hs.faa
    Posted date:  Aug 4, 2009  4:42 PM
  Number of letters in database: 18,247,518
  Number of sequences in database:  37,866
  
Lambda     K      H
   0.318    0.133    0.398 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,312,887
Number of Sequences: 37866
Number of extensions: 288048
Number of successful extensions: 1565
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 41
Number of HSP's successfully gapped in prelim test: 24
Number of HSP's that attempted gapping in prelim test: 1494
Number of HSP's gapped (non-prelim): 90
length of query: 155
length of database: 18,247,518
effective HSP length: 93
effective length of query: 62
effective length of database: 14,725,980
effective search space: 913010760
effective search space used: 913010760
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 57 (26.6 bits)

Search results were obtained with NCBI BLAST and RefSeq entries.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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