BLASTP 2.2.11 [Jun-05-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|22094079 thyroid hormone receptor interactor 3 [Homo sapiens] (155 letters) Database: hs.faa 37,866 sequences; 18,247,518 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|22094079 thyroid hormone receptor interactor 3 [Homo sapiens] 320 4e-88 gi|20149643 zinc finger, HIT type 6 [Homo sapiens] 36 0.012 gi|7656936 zinc finger, HIT domain containing 2 [Homo sapiens] 36 0.012 gi|38045938 ring finger protein 144 [Homo sapiens] 32 0.22 gi|42518068 trans-golgi network protein 2 [Homo sapiens] 31 0.49 gi|5453617 zinc finger, HIT domain containing 1 [Homo sapiens] 31 0.49 gi|160948610 E3 ubiquitin-protein ligase UBR3 [Homo sapiens] 30 0.83 gi|13376064 zinc finger protein 408 [Homo sapiens] 30 0.83 gi|56550039 myeloid/lymphoid or mixed-lineage leukemia protein [... 29 1.9 gi|23397479 zinc finger protein 524 [Homo sapiens] 29 1.9 gi|89001105 zinc finger protein 571 [Homo sapiens] 28 2.4 gi|88759348 ring finger protein 219 [Homo sapiens] 28 3.2 gi|30260188 Golgi autoantigen, golgin subfamily a, 5 [Homo sapiens] 28 3.2 gi|67089160 promyelocytic leukemia protein isoform 11 [Homo sapi... 28 4.1 gi|67089157 promyelocytic leukemia protein isoform 2 [Homo sapiens] 28 4.1 gi|15451765 promyelocytic leukemia protein isoform 9 [Homo sapiens] 28 4.1 gi|67089154 promyelocytic leukemia protein isoform 8 [Homo sapiens] 28 4.1 gi|4505903 promyelocytic leukemia protein isoform 6 [Homo sapiens] 28 4.1 gi|15451775 promyelocytic leukemia protein isoform 7 [Homo sapiens] 28 4.1 gi|15451779 promyelocytic leukemia protein isoform 10 [Homo sapi... 28 4.1 gi|67089149 promyelocytic leukemia protein isoform 1 [Homo sapiens] 28 4.1 gi|109637788 promyelocytic leukemia protein isoform 5 [Homo sapi... 28 4.1 gi|28827795 chromatin modifying protein 4B [Homo sapiens] 28 4.1 gi|46359075 zinc finger protein 423 [Homo sapiens] 28 4.1 gi|194239731 eukaryotic translation elongation factor 1 delta is... 28 4.1 gi|194239727 eukaryotic translation elongation factor 1 delta is... 28 4.1 gi|194239725 eukaryotic translation elongation factor 1 delta is... 28 4.1 gi|194239723 eukaryotic translation elongation factor 1 delta is... 28 4.1 gi|25453472 eukaryotic translation elongation factor 1 delta iso... 28 4.1 gi|25453474 eukaryotic translation elongation factor 1 delta iso... 28 4.1 >gi|22094079 thyroid hormone receptor interactor 3 [Homo sapiens] Length = 155 Score = 320 bits (819), Expect = 4e-88 Identities = 155/155 (100%), Positives = 155/155 (100%) Query: 1 MASLKCSTVVCVICLEKPKYRCPACRVPYCSVVCFRKHKEQCNPETRPVEKKIRSALPTK 60 MASLKCSTVVCVICLEKPKYRCPACRVPYCSVVCFRKHKEQCNPETRPVEKKIRSALPTK Sbjct: 1 MASLKCSTVVCVICLEKPKYRCPACRVPYCSVVCFRKHKEQCNPETRPVEKKIRSALPTK 60 Query: 61 TVKPVENKDDDDSIADFLNSDEEEDRVSLQNLKNLGESATLRSLLLNPHLRQLMVNLDQG 120 TVKPVENKDDDDSIADFLNSDEEEDRVSLQNLKNLGESATLRSLLLNPHLRQLMVNLDQG Sbjct: 61 TVKPVENKDDDDSIADFLNSDEEEDRVSLQNLKNLGESATLRSLLLNPHLRQLMVNLDQG 120 Query: 121 EDKAKLMRAYMQEPLFVEFADCCLGIVEPSQNEES 155 EDKAKLMRAYMQEPLFVEFADCCLGIVEPSQNEES Sbjct: 121 EDKAKLMRAYMQEPLFVEFADCCLGIVEPSQNEES 155 >gi|20149643 zinc finger, HIT type 6 [Homo sapiens] Length = 470 Score = 36.2 bits (82), Expect = 0.012 Identities = 17/36 (47%), Positives = 21/36 (58%), Gaps = 3/36 (8%) Query: 11 CVIC-LEKPKYRCPACRVPYCSVVCFRKHKEQ--CN 43 C C E+ KYRCP C CS+ C +KHK + CN Sbjct: 220 CETCGTEEAKYRCPRCMRYSCSLPCVKKHKAELTCN 255 >gi|7656936 zinc finger, HIT domain containing 2 [Homo sapiens] Length = 403 Score = 36.2 bits (82), Expect = 0.012 Identities = 11/24 (45%), Positives = 16/24 (66%) Query: 15 LEKPKYRCPACRVPYCSVVCFRKH 38 ++ +Y CP C PYCS+ C+R H Sbjct: 15 VQPARYTCPRCNAPYCSLRCYRTH 38 >gi|38045938 ring finger protein 144 [Homo sapiens] Length = 292 Score = 32.0 bits (71), Expect = 0.22 Identities = 18/54 (33%), Positives = 27/54 (50%), Gaps = 5/54 (9%) Query: 21 RCPACRVPYCSVVCFRKHKEQCNPETRPVEKKIRSALPTKTVKPVENKDDDDSI 74 +C ACR+ +CS H Q PET P+ + LP +T + ++DD I Sbjct: 134 QCKACRMEFCSTCKASWHPGQGCPETMPI-----TFLPGETSAAFKMEEDDAPI 182 >gi|42518068 trans-golgi network protein 2 [Homo sapiens] Length = 437 Score = 30.8 bits (68), Expect = 0.49 Identities = 13/41 (31%), Positives = 27/41 (65%) Query: 48 PVEKKIRSALPTKTVKPVENKDDDDSIADFLNSDEEEDRVS 88 P +++++S+ PT+ V+P E +DDD + EE++++S Sbjct: 307 PPQEEVKSSEPTEDVEPKEAEDDDTGPEEGSPPKEEKEKMS 347 >gi|5453617 zinc finger, HIT domain containing 1 [Homo sapiens] Length = 154 Score = 30.8 bits (68), Expect = 0.49 Identities = 11/30 (36%), Positives = 15/30 (50%) Query: 11 CVICLEKPKYRCPACRVPYCSVVCFRKHKE 40 C +C Y C +C YC+V C H+E Sbjct: 117 CAVCGFPSPYTCVSCGARYCTVRCLGTHQE 146 >gi|160948610 E3 ubiquitin-protein ligase UBR3 [Homo sapiens] Length = 1888 Score = 30.0 bits (66), Expect = 0.83 Identities = 18/58 (31%), Positives = 29/58 (50%), Gaps = 1/58 (1%) Query: 1 MASLKCSTVVCVICLEKPKYRCPACRVPYCSVV-CFRKHKEQCNPETRPVEKKIRSAL 57 M SL+ V+ ++K ++ CP CR SV+ C+ + NP RP K I+ + Sbjct: 1339 MESLRNDQVLQGFSVDKGEFTCPLCRQFANSVLPCYPGSNVENNPWQRPSNKSIQDLI 1396 >gi|13376064 zinc finger protein 408 [Homo sapiens] Length = 720 Score = 30.0 bits (66), Expect = 0.83 Identities = 16/48 (33%), Positives = 20/48 (41%) Query: 15 LEKPKYRCPACRVPYCSVVCFRKHKEQCNPETRPVEKKIRSALPTKTV 62 LE YRCP C + Y R+H+ PE + SA TV Sbjct: 602 LEDKPYRCPTCGMGYTLPQSLRRHQLSHRPEAPCSPPSVPSAASEPTV 649 >gi|56550039 myeloid/lymphoid or mixed-lineage leukemia protein [Homo sapiens] Length = 3969 Score = 28.9 bits (63), Expect = 1.9 Identities = 19/69 (27%), Positives = 30/69 (43%), Gaps = 11/69 (15%) Query: 10 VCVICLEKPKY-----RCPACRVPYCSVVCFRKHKEQCNPETRPVEKKIRSALPTKTVKP 64 VC CL+KPK+ + C++ C + + K + + V+KK K K Sbjct: 1169 VCTNCLDKPKFGGRNIKKQCCKMRKCQNLQWMPSKAYLQKQAKAVKKK------EKKSKT 1222 Query: 65 VENKDDDDS 73 E KD +S Sbjct: 1223 SEKKDSKES 1231 >gi|23397479 zinc finger protein 524 [Homo sapiens] Length = 264 Score = 28.9 bits (63), Expect = 1.9 Identities = 12/34 (35%), Positives = 20/34 (58%), Gaps = 1/34 (2%) Query: 16 EKPKYRCPACRVPYCSVVCFRKHKEQCNPETRPV 49 E+P Y+CP CR+ + R+H ++ +PE V Sbjct: 195 ERP-YQCPICRLRFTEANTLRRHAKRKHPEAMGV 227 >gi|89001105 zinc finger protein 571 [Homo sapiens] Length = 609 Score = 28.5 bits (62), Expect = 2.4 Identities = 16/54 (29%), Positives = 25/54 (46%) Query: 7 STVVCVICLEKPKYRCPACRVPYCSVVCFRKHKEQCNPETRPVEKKIRSALPTK 60 ST +I ++ Y+C CR + + C +H+E N E KK R+ K Sbjct: 126 STFHRIIPTKEKLYKCKECRQGFSYLSCLIQHEENHNIEKCSEVKKHRNTFSKK 179 >gi|88759348 ring finger protein 219 [Homo sapiens] Length = 726 Score = 28.1 bits (61), Expect = 3.2 Identities = 33/118 (27%), Positives = 54/118 (45%), Gaps = 14/118 (11%) Query: 9 VVCVICLE---KPKYRCPACRVPYCSVVCFRKHKEQCNPETRPVEKKIRSALPTKTVKPV 65 V C IC++ K +CPACRVP ++ + + +R L KT + Sbjct: 36 VFCSICIDLWLKNNSQCPACRVPITPENPCKEIIGGTSESEPMLSHTVRKHL-RKTRLEL 94 Query: 66 ENKDDDDSIADFLNSDEEEDRVSLQNLKNLGESATLRSLLLNPHLRQLMVNLDQGEDK 123 +K+ +D I D L + EE KNL + +++ +L+P +V +Q EDK Sbjct: 95 LHKEYEDEI-DCLQKEVEE-----LKSKNLSLESQIKT-ILDP---LTLVQGNQNEDK 142 >gi|30260188 Golgi autoantigen, golgin subfamily a, 5 [Homo sapiens] Length = 731 Score = 28.1 bits (61), Expect = 3.2 Identities = 18/68 (26%), Positives = 30/68 (44%), Gaps = 16/68 (23%) Query: 52 KIRSALPTKTVKPVEN----------------KDDDDSIADFLNSDEEEDRVSLQNLKNL 95 K+ S P + PVEN + DD+ + DFLNS ++E ++ K Sbjct: 85 KVGSRTPVEASHPVENASVPRPSSHFVRRKKSEPDDELLFDFLNSSQKEPTGRVEIRKEK 144 Query: 96 GESATLRS 103 G++ +S Sbjct: 145 GKTPVFQS 152 >gi|67089160 promyelocytic leukemia protein isoform 11 [Homo sapiens] Length = 781 Score = 27.7 bits (60), Expect = 4.1 Identities = 10/26 (38%), Positives = 14/26 (53%) Query: 4 LKCSTVVCVICLEKPKYRCPACRVPY 29 L C +C CLE +CP C+ P+ Sbjct: 70 LPCLHTLCSGCLEASGMQCPICQAPW 95 >gi|67089157 promyelocytic leukemia protein isoform 2 [Homo sapiens] Length = 611 Score = 27.7 bits (60), Expect = 4.1 Identities = 10/26 (38%), Positives = 14/26 (53%) Query: 4 LKCSTVVCVICLEKPKYRCPACRVPY 29 L C +C CLE +CP C+ P+ Sbjct: 70 LPCLHTLCSGCLEASGMQCPICQAPW 95 >gi|15451765 promyelocytic leukemia protein isoform 9 [Homo sapiens] Length = 829 Score = 27.7 bits (60), Expect = 4.1 Identities = 10/26 (38%), Positives = 14/26 (53%) Query: 4 LKCSTVVCVICLEKPKYRCPACRVPY 29 L C +C CLE +CP C+ P+ Sbjct: 70 LPCLHTLCSGCLEASGMQCPICQAPW 95 >gi|67089154 promyelocytic leukemia protein isoform 8 [Homo sapiens] Length = 435 Score = 27.7 bits (60), Expect = 4.1 Identities = 10/26 (38%), Positives = 14/26 (53%) Query: 4 LKCSTVVCVICLEKPKYRCPACRVPY 29 L C +C CLE +CP C+ P+ Sbjct: 70 LPCLHTLCSGCLEASGMQCPICQAPW 95 >gi|4505903 promyelocytic leukemia protein isoform 6 [Homo sapiens] Length = 633 Score = 27.7 bits (60), Expect = 4.1 Identities = 10/26 (38%), Positives = 14/26 (53%) Query: 4 LKCSTVVCVICLEKPKYRCPACRVPY 29 L C +C CLE +CP C+ P+ Sbjct: 70 LPCLHTLCSGCLEASGMQCPICQAPW 95 >gi|15451775 promyelocytic leukemia protein isoform 7 [Homo sapiens] Length = 423 Score = 27.7 bits (60), Expect = 4.1 Identities = 10/26 (38%), Positives = 14/26 (53%) Query: 4 LKCSTVVCVICLEKPKYRCPACRVPY 29 L C +C CLE +CP C+ P+ Sbjct: 70 LPCLHTLCSGCLEASGMQCPICQAPW 95 >gi|15451779 promyelocytic leukemia protein isoform 10 [Homo sapiens] Length = 585 Score = 27.7 bits (60), Expect = 4.1 Identities = 10/26 (38%), Positives = 14/26 (53%) Query: 4 LKCSTVVCVICLEKPKYRCPACRVPY 29 L C +C CLE +CP C+ P+ Sbjct: 70 LPCLHTLCSGCLEASGMQCPICQAPW 95 >gi|67089149 promyelocytic leukemia protein isoform 1 [Homo sapiens] Length = 882 Score = 27.7 bits (60), Expect = 4.1 Identities = 10/26 (38%), Positives = 14/26 (53%) Query: 4 LKCSTVVCVICLEKPKYRCPACRVPY 29 L C +C CLE +CP C+ P+ Sbjct: 70 LPCLHTLCSGCLEASGMQCPICQAPW 95 >gi|109637788 promyelocytic leukemia protein isoform 5 [Homo sapiens] Length = 560 Score = 27.7 bits (60), Expect = 4.1 Identities = 10/26 (38%), Positives = 14/26 (53%) Query: 4 LKCSTVVCVICLEKPKYRCPACRVPY 29 L C +C CLE +CP C+ P+ Sbjct: 70 LPCLHTLCSGCLEASGMQCPICQAPW 95 >gi|28827795 chromatin modifying protein 4B [Homo sapiens] Length = 224 Score = 27.7 bits (60), Expect = 4.1 Identities = 14/32 (43%), Positives = 17/32 (53%) Query: 40 EQCNPETRPVEKKIRSALPTKTVKPVENKDDD 71 E PET P+ ALP+K K E +DDD Sbjct: 182 EISGPETVPLPNVPSIALPSKPAKKKEEEDDD 213 >gi|46359075 zinc finger protein 423 [Homo sapiens] Length = 1284 Score = 27.7 bits (60), Expect = 4.1 Identities = 32/128 (25%), Positives = 47/128 (36%), Gaps = 11/128 (8%) Query: 11 CVICLEKPKYRCPACRVPYCSVVCFRKH-KEQCNPETRPVEKKIRSALPTKTVKPVENKD 69 C I KY C C + +++ KH +E+ E + +P K E D Sbjct: 798 CHITTHSKKYNCKFCSKAFHAIILLEKHLREKHCVFDAATENGTANGVPPMATKKAEPAD 857 Query: 70 DDDSI---ADFLNSDE-EEDRVS----LQNLKNLGESATLRSLLLNPHLRQLMVNLDQGE 121 + + NS E ED V + G + T+ LL N LR N+ GE Sbjct: 858 LQGMLLKNPEAPNSHEASEDDVDASEPMYGCDICGAAYTMEVLLQNHRLRD--HNIRPGE 915 Query: 122 DKAKLMRA 129 D +A Sbjct: 916 DDGSRKKA 923 >gi|194239731 eukaryotic translation elongation factor 1 delta isoform 2 [Homo sapiens] Length = 281 Score = 27.7 bits (60), Expect = 4.1 Identities = 17/58 (29%), Positives = 28/58 (48%), Gaps = 7/58 (12%) Query: 40 EQCNPETRPVEKKIRSALPTKTVKPVENK-------DDDDSIADFLNSDEEEDRVSLQ 90 E+ +P R + + P + V+P K D+DD I F + +EEED+ + Q Sbjct: 116 EKSSPGHRATAPQTQHVSPMRQVEPPAKKPATPAEDDEDDDIDLFGSDNEEEDKEAAQ 173 >gi|194239727 eukaryotic translation elongation factor 1 delta isoform 2 [Homo sapiens] Length = 281 Score = 27.7 bits (60), Expect = 4.1 Identities = 17/58 (29%), Positives = 28/58 (48%), Gaps = 7/58 (12%) Query: 40 EQCNPETRPVEKKIRSALPTKTVKPVENK-------DDDDSIADFLNSDEEEDRVSLQ 90 E+ +P R + + P + V+P K D+DD I F + +EEED+ + Q Sbjct: 116 EKSSPGHRATAPQTQHVSPMRQVEPPAKKPATPAEDDEDDDIDLFGSDNEEEDKEAAQ 173 >gi|194239725 eukaryotic translation elongation factor 1 delta isoform 3 [Homo sapiens] Length = 646 Score = 27.7 bits (60), Expect = 4.1 Identities = 17/58 (29%), Positives = 28/58 (48%), Gaps = 7/58 (12%) Query: 40 EQCNPETRPVEKKIRSALPTKTVKPVENK-------DDDDSIADFLNSDEEEDRVSLQ 90 E+ +P R + + P + V+P K D+DD I F + +EEED+ + Q Sbjct: 481 EKSSPGHRATAPQTQHVSPMRQVEPPAKKPATPAEDDEDDDIDLFGSDNEEEDKEAAQ 538 >gi|194239723 eukaryotic translation elongation factor 1 delta isoform 1 [Homo sapiens] Length = 647 Score = 27.7 bits (60), Expect = 4.1 Identities = 17/58 (29%), Positives = 28/58 (48%), Gaps = 7/58 (12%) Query: 40 EQCNPETRPVEKKIRSALPTKTVKPVENK-------DDDDSIADFLNSDEEEDRVSLQ 90 E+ +P R + + P + V+P K D+DD I F + +EEED+ + Q Sbjct: 482 EKSSPGHRATAPQTQHVSPMRQVEPPAKKPATPAEDDEDDDIDLFGSDNEEEDKEAAQ 539 >gi|25453472 eukaryotic translation elongation factor 1 delta isoform 2 [Homo sapiens] Length = 281 Score = 27.7 bits (60), Expect = 4.1 Identities = 17/58 (29%), Positives = 28/58 (48%), Gaps = 7/58 (12%) Query: 40 EQCNPETRPVEKKIRSALPTKTVKPVENK-------DDDDSIADFLNSDEEEDRVSLQ 90 E+ +P R + + P + V+P K D+DD I F + +EEED+ + Q Sbjct: 116 EKSSPGHRATAPQTQHVSPMRQVEPPAKKPATPAEDDEDDDIDLFGSDNEEEDKEAAQ 173 >gi|25453474 eukaryotic translation elongation factor 1 delta isoform 1 [Homo sapiens] Length = 647 Score = 27.7 bits (60), Expect = 4.1 Identities = 17/58 (29%), Positives = 28/58 (48%), Gaps = 7/58 (12%) Query: 40 EQCNPETRPVEKKIRSALPTKTVKPVENK-------DDDDSIADFLNSDEEEDRVSLQ 90 E+ +P R + + P + V+P K D+DD I F + +EEED+ + Q Sbjct: 482 EKSSPGHRATAPQTQHVSPMRQVEPPAKKPATPAEDDEDDDIDLFGSDNEEEDKEAAQ 539 Database: hs.faa Posted date: Aug 4, 2009 4:42 PM Number of letters in database: 18,247,518 Number of sequences in database: 37,866 Lambda K H 0.318 0.133 0.398 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 6,312,887 Number of Sequences: 37866 Number of extensions: 288048 Number of successful extensions: 1565 Number of sequences better than 10.0: 30 Number of HSP's better than 10.0 without gapping: 41 Number of HSP's successfully gapped in prelim test: 24 Number of HSP's that attempted gapping in prelim test: 1494 Number of HSP's gapped (non-prelim): 90 length of query: 155 length of database: 18,247,518 effective HSP length: 93 effective length of query: 62 effective length of database: 14,725,980 effective search space: 913010760 effective search space used: 913010760 T: 11 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 57 (26.6 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.