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Search of human proteins with 22035696
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|22035696 synaptogyrin 1 isoform 1a [Homo sapiens]
(233 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|22035696 synaptogyrin 1 isoform 1a [Homo sapiens] 484 e-137
gi|22035698 synaptogyrin 1 isoform 1b [Homo sapiens] 341 4e-94
gi|22035700 synaptogyrin 1 isoform 1c [Homo sapiens] 272 2e-73
gi|6631112 synaptogyrin 3 [Homo sapiens] 236 1e-62
gi|4759202 synaptogyrin 2 [Homo sapiens] 223 1e-58
gi|22035702 synaptogyrin 4 [Homo sapiens] 141 5e-34
gi|194018518 synaptoporin isoform 1 [Homo sapiens] 35 0.042
gi|21389481 synaptoporin isoform 2 [Homo sapiens] 35 0.042
gi|27764867 synaptophysin [Homo sapiens] 33 0.16
gi|31657096 chemokine-like factor superfamily 4 isoform 2 [Homo ... 31 1.0
gi|30520333 chemokine-like factor superfamily 4 isoform 1 [Homo ... 31 1.0
gi|122937337 fat storage-inducing transmembrane protein 2 [Homo ... 30 2.3
gi|20986497 mitogen-activated protein kinase 7 isoform 1 [Homo s... 30 2.3
gi|209529736 mitogen-activated protein kinase 7 isoform 1 [Homo ... 30 2.3
gi|209529734 mitogen-activated protein kinase 7 isoform 1 [Homo ... 30 2.3
gi|20986499 mitogen-activated protein kinase 7 isoform 2 [Homo s... 30 2.3
gi|23592232 mediator complex subunit 19 [Homo sapiens] 28 5.2
gi|158303333 synaptopodin isoform B [Homo sapiens] 28 5.2
gi|40353727 synaptopodin isoform A [Homo sapiens] 28 5.2
gi|25470886 DAZ associated protein 1 isoform b [Homo sapiens] 28 6.7
gi|116256350 tuberous sclerosis 2 isoform 4 [Homo sapiens] 28 8.8
gi|116256352 tuberous sclerosis 2 isoform 1 [Homo sapiens] 28 8.8
gi|167412124 tuberous sclerosis 2 isoform 5 [Homo sapiens] 28 8.8
gi|13236497 5-hydroxytryptamine receptor 5A [Homo sapiens] 28 8.8
gi|32261332 seizure related 6 homolog (mouse)-like precursor [Ho... 28 8.8
>gi|22035696 synaptogyrin 1 isoform 1a [Homo sapiens]
Length = 233
Score = 484 bits (1245), Expect = e-137
Identities = 233/233 (100%), Positives = 233/233 (100%)
Query: 1 MEGGAYGAGKAGGAFDPYTLVRQPHTILRVVSWLFSIVVFGSIVNEGYLNSASEGEEFCI 60
MEGGAYGAGKAGGAFDPYTLVRQPHTILRVVSWLFSIVVFGSIVNEGYLNSASEGEEFCI
Sbjct: 1 MEGGAYGAGKAGGAFDPYTLVRQPHTILRVVSWLFSIVVFGSIVNEGYLNSASEGEEFCI 60
Query: 61 YNRNPNACSYGVAVGVLAFLTCLLYLALDVYFPQISSVKDRKKAVLSDIGVSAFWAFLWF 120
YNRNPNACSYGVAVGVLAFLTCLLYLALDVYFPQISSVKDRKKAVLSDIGVSAFWAFLWF
Sbjct: 61 YNRNPNACSYGVAVGVLAFLTCLLYLALDVYFPQISSVKDRKKAVLSDIGVSAFWAFLWF 120
Query: 121 VGFCYLANQWQVSKPKDNPLNEGTDAARAAIAFSFFSIFTWAGQAVLAFQRYQIGADSAL 180
VGFCYLANQWQVSKPKDNPLNEGTDAARAAIAFSFFSIFTWAGQAVLAFQRYQIGADSAL
Sbjct: 121 VGFCYLANQWQVSKPKDNPLNEGTDAARAAIAFSFFSIFTWAGQAVLAFQRYQIGADSAL 180
Query: 181 FSQDYMDPSQDSSMPYAPYVEPTGPDPAGMGGTYQQPANTFDTEPQGYQSQGY 233
FSQDYMDPSQDSSMPYAPYVEPTGPDPAGMGGTYQQPANTFDTEPQGYQSQGY
Sbjct: 181 FSQDYMDPSQDSSMPYAPYVEPTGPDPAGMGGTYQQPANTFDTEPQGYQSQGY 233
>gi|22035698 synaptogyrin 1 isoform 1b [Homo sapiens]
Length = 191
Score = 341 bits (874), Expect = 4e-94
Identities = 169/195 (86%), Positives = 176/195 (90%), Gaps = 4/195 (2%)
Query: 1 MEGGAYGAGKAGGAFDPYTLVRQPHTILRVVSWLFSIVVFGSIVNEGYLNSASEGEEFCI 60
MEGGAYGAGKAGGAFDPYTLVRQPHTILRVVSWLFSIVVFGSIVNEGYLNSASEGEEFCI
Sbjct: 1 MEGGAYGAGKAGGAFDPYTLVRQPHTILRVVSWLFSIVVFGSIVNEGYLNSASEGEEFCI 60
Query: 61 YNRNPNACSYGVAVGVLAFLTCLLYLALDVYFPQISSVKDRKKAVLSDIGVSAFWAFLWF 120
YNRNPNACSYGVAVGVLAFLTCLLYLALDVYFPQISSVKDRKKAVLSDIGVSAFWAFLWF
Sbjct: 61 YNRNPNACSYGVAVGVLAFLTCLLYLALDVYFPQISSVKDRKKAVLSDIGVSAFWAFLWF 120
Query: 121 VGFCYLANQWQVSKPKDNPLNEGTDAARAAIAFSFFSIFTWAGQAVLAFQRYQIGADSAL 180
VGFCYLANQWQVSKPKDNPLNEGTDAARAAIAFSFFSIFTW+ A LA +R++
Sbjct: 121 VGFCYLANQWQVSKPKDNPLNEGTDAARAAIAFSFFSIFTWSLTAALAVRRFK----DLS 176
Query: 181 FSQDYMDPSQDSSMP 195
F ++Y S+ P
Sbjct: 177 FQEEYSTLFPASAQP 191
>gi|22035700 synaptogyrin 1 isoform 1c [Homo sapiens]
Length = 192
Score = 272 bits (696), Expect = 2e-73
Identities = 139/172 (80%), Positives = 146/172 (84%), Gaps = 11/172 (6%)
Query: 31 VSW-------LFSIVVFGSIVNEGYLNSASEGEEFCIYNRNPNACSYGVAVGVLAFLTCL 83
VSW LFSIVVFGSIVNEGYLNSASEGEEFCIYNRNPNACSYGVAVGVLAFLTCL
Sbjct: 25 VSWRSRPGCELFSIVVFGSIVNEGYLNSASEGEEFCIYNRNPNACSYGVAVGVLAFLTCL 84
Query: 84 LYLALDVYFPQISSVKDRKKAVLSDIGVSAFWAFLWFVGFCYLANQWQVSKPKDNPLNEG 143
LYLALDVYFPQISSVKDRKKAVLSDIGVSAFWAFLWFVGFCYLANQWQVSKPKDNPLNEG
Sbjct: 85 LYLALDVYFPQISSVKDRKKAVLSDIGVSAFWAFLWFVGFCYLANQWQVSKPKDNPLNEG 144
Query: 144 TDAARAAIAFSFFSIFTWAGQAVLAFQRYQIGADSALFSQDYMDPSQDSSMP 195
TDAARAAIAFSFFSIFTW+ A LA +R++ F ++Y S+ P
Sbjct: 145 TDAARAAIAFSFFSIFTWSLTAALAVRRFK----DLSFQEEYSTLFPASAQP 192
>gi|6631112 synaptogyrin 3 [Homo sapiens]
Length = 229
Score = 236 bits (603), Expect = 1e-62
Identities = 123/235 (52%), Positives = 155/235 (65%), Gaps = 8/235 (3%)
Query: 1 MEGGAYGAGKAGGAFDPYTLVRQPHTILRVVSWLFSIVVFGSIVNEGYLNSASEGEEFCI 60
MEG ++GAG+AG A DP + R+P T+LRV SW+FSI VFG IVNEGY+N+ S E C+
Sbjct: 1 MEGASFGAGRAGAALDPVSFARRPQTLLRVASWVFSIAVFGPIVNEGYVNTDSGPELRCV 60
Query: 61 YNRNPNACSYGVAVGVLAFLTCLLYLALDVYFPQISSVKDRKKAVLSDIGVSAFWAFLWF 120
+N N AC +GVA+G+ AFL C +L LDV F QISSV+DR++AVL D+G S W+FLWF
Sbjct: 61 FNGNAGACRFGVALGLGAFLACAAFLLLDVRFQQISSVRDRRRAVLLDLGFSGLWSFLWF 120
Query: 121 VGFCYLANQWQVSKPKDNPLNEGTDAARAAIAFSFFSIFTWAGQAVLAFQRYQIGADSAL 180
VGFC+L NQWQ + P G DAARAAIAFSFFSI +W V A QR+++G D +L
Sbjct: 121 VGFCFLTNQWQRTAPGPATTQAG-DAARAAIAFSFFSILSWVALTVKALQRFRLGTDMSL 179
Query: 181 FSQDYMDPSQDSSMPYAPYVEPTGPDPAGMGGTYQQP--ANTFDTEPQGYQSQGY 233
F+ + + S +S Y Y P G G TYQ P T DT P+GYQ Y
Sbjct: 180 FATEQL--STGASQAYPGY--PVGSGVEGT-ETYQSPPFTETLDTSPKGYQVPAY 229
>gi|4759202 synaptogyrin 2 [Homo sapiens]
Length = 224
Score = 223 bits (567), Expect = 1e-58
Identities = 113/230 (49%), Positives = 145/230 (63%), Gaps = 12/230 (5%)
Query: 1 MEGGAYGAGKAGGAFDPYTLVRQPHTILRVVSWLFSIVVFGSIVNEGYLNSASEGEEFCI 60
ME GAYGA KAGG+FD + QP + R V +F+++VF I EGY N+ + +C+
Sbjct: 1 MESGAYGAAKAGGSFDLRRFLTQPQVVARAVCLVFALIVFSCIYGEGYSNAHESKQMYCV 60
Query: 61 YNRNPNACSYGVAVGVLAFLTCLLYLALDVYFPQISSVKDRKKAVLSDIGVSAFWAFLWF 120
+NRN +AC YG A+GVLAFL +L +D YFPQIS+ DRK V+ D+ SA W FLWF
Sbjct: 61 FNRNEDACRYGSAIGVLAFLASAFFLVVDAYFPQISNATDRKYLVIGDLLFSALWTFLWF 120
Query: 121 VGFCYLANQWQVSKPKDNPLNEGTDAARAAIAFSFFSIFTWAGQAVLAFQRYQIGADSAL 180
VGFC+L NQW V+ PKD + G D+ RAAI FSFFSIF+W A LA+QRY+ G D
Sbjct: 121 VGFCFLTNQWAVTNPKD--VLVGADSVRAAITFSFFSIFSWGVLASLAYQRYKAGVDD-- 176
Query: 181 FSQDYMDPSQDSSMPYAPYVEPTGPDPAGMGGTYQQPANTFDTE-PQGYQ 229
F Q+Y+DP+ D + YA Y P YQQP T + E +GYQ
Sbjct: 177 FIQNYVDPTPDPNTAYASY-------PGASVDNYQQPPFTQNAETTEGYQ 219
>gi|22035702 synaptogyrin 4 [Homo sapiens]
Length = 234
Score = 141 bits (355), Expect = 5e-34
Identities = 75/184 (40%), Positives = 106/184 (57%), Gaps = 18/184 (9%)
Query: 21 VRQPHTILRVVSWLFSIVVFGSIVNEGYLNSASEGEEFCIYNRNPNACSYGVAVGVLAFL 80
+R+P TI RV +FS++VF S++ +GY N + CI N N ACS+ V G LAFL
Sbjct: 19 LRRPKTITRVFEGVFSLIVFSSLLTDGYQNKMESPQLHCILNSNSVACSFAVGAGFLAFL 78
Query: 81 TCLLYLALDVYFPQISSVKDRKKAVLSDIGVSAFWAFLWFVGFCYLANQWQVSKPKDNPL 140
+CL +L LD +I+ + + L D ++ WA +WF+GFC+LANQWQ S PK+ L
Sbjct: 79 SCLAFLVLDTQETRIAGTRFKTAFQLLDFILAVLWAVVWFMGFCFLANQWQHSPPKEFLL 138
Query: 141 NEGTDAARAAIAFSFFSIFTWAGQAVLAFQRYQIGADSALFSQDYMDPSQDSSMPYAPYV 200
G+ +A+AAIAF+FFSI W QA LAFQ D D+ +PY ++
Sbjct: 139 --GSSSAQAAIAFTFFSILVWIFQAYLAFQ----------------DLRNDAPVPYKRFL 180
Query: 201 EPTG 204
+ G
Sbjct: 181 DEGG 184
>gi|194018518 synaptoporin isoform 1 [Homo sapiens]
Length = 285
Score = 35.4 bits (80), Expect = 0.042
Identities = 42/200 (21%), Positives = 74/200 (37%), Gaps = 28/200 (14%)
Query: 54 EGEEFCIYNRNPNACSYGVAVGVLAFLTCLLYLALDVYFPQISSVKDRKKAVLSDIGVSA 113
E ++ + + ++ + V V V AFL L + ++F + ++ + L D V+
Sbjct: 85 ERQKLALIGDSSSSAEFFVTVAVFAFLYSLAATVVYIFFQ--NKYRENNRGPLIDFIVTV 142
Query: 114 FWAFLWFVGFCY----LANQWQVSKPKD---------NPLNE-------GTDAARAAIAF 153
++FLW VG L++ + PK+ P N+ + ++ F
Sbjct: 143 VFSFLWLVGSSAWAKGLSDVKVATDPKEVLLLMSACKQPSNKCMAIHSPVMSSLNTSVVF 202
Query: 154 SFFSIFTWAGQAVLAFQRYQIGADSALFSQDYMDPSQDSSMPYAPYVEPTGPDPAGMGGT 213
F + WAG F+ + + D M+ SS Y D G
Sbjct: 203 GFLNFILWAGNIWFVFKETGWHSSGQRYLSDPME-KHSSSYNQGGY----NQDSYGSSSG 257
Query: 214 YQQPANTFDTEPQ-GYQSQG 232
Y Q A+ T + G Q G
Sbjct: 258 YSQQASLGPTSDEFGQQPTG 277
>gi|21389481 synaptoporin isoform 2 [Homo sapiens]
Length = 265
Score = 35.4 bits (80), Expect = 0.042
Identities = 42/200 (21%), Positives = 74/200 (37%), Gaps = 28/200 (14%)
Query: 54 EGEEFCIYNRNPNACSYGVAVGVLAFLTCLLYLALDVYFPQISSVKDRKKAVLSDIGVSA 113
E ++ + + ++ + V V V AFL L + ++F + ++ + L D V+
Sbjct: 65 ERQKLALIGDSSSSAEFFVTVAVFAFLYSLAATVVYIFFQ--NKYRENNRGPLIDFIVTV 122
Query: 114 FWAFLWFVGFCY----LANQWQVSKPKD---------NPLNE-------GTDAARAAIAF 153
++FLW VG L++ + PK+ P N+ + ++ F
Sbjct: 123 VFSFLWLVGSSAWAKGLSDVKVATDPKEVLLLMSACKQPSNKCMAIHSPVMSSLNTSVVF 182
Query: 154 SFFSIFTWAGQAVLAFQRYQIGADSALFSQDYMDPSQDSSMPYAPYVEPTGPDPAGMGGT 213
F + WAG F+ + + D M+ SS Y D G
Sbjct: 183 GFLNFILWAGNIWFVFKETGWHSSGQRYLSDPME-KHSSSYNQGGY----NQDSYGSSSG 237
Query: 214 YQQPANTFDTEPQ-GYQSQG 232
Y Q A+ T + G Q G
Sbjct: 238 YSQQASLGPTSDEFGQQPTG 257
>gi|27764867 synaptophysin [Homo sapiens]
Length = 313
Score = 33.5 bits (75), Expect = 0.16
Identities = 68/298 (22%), Positives = 102/298 (34%), Gaps = 84/298 (28%)
Query: 11 AGGAFDPYTLVRQPHTILRVVSWLFSIVVF---GSIVNEGYLN----SASEGE-----EF 58
AGG F +V++P ++V+ W+F+I F GS E L+ + +E + EF
Sbjct: 15 AGGQF---RVVKEPLGFVKVLQWVFAIFAFATCGSYSGELQLSVDCANKTESDLSIEVEF 71
Query: 59 -------CIYNRNP----------------NACSYGVAVGVLAFLTCLLYLALDVYFPQI 95
+Y P ++ + V V V AFL + LA ++
Sbjct: 72 EYPFRLHQVYFDAPTCRGGTTKVFLVGDYSSSAEFFVTVAVFAFLYSMGALATYIFLQ-- 129
Query: 96 SSVKDRKKAVLSDIGVSAFWAFLWFVGFCYLANQWQVSKPKDNPLN-------------- 141
+ ++ K + D +A +AF+W V A K +P N
Sbjct: 130 NKYRENNKGPMLDFLATAVFAFMWLVSSSAWAKGLSDVKMATDPENIIKEMPVCRQTGNT 189
Query: 142 ------EGTDAARAAIAFSFFSIFTWAGQAVLAFQ---------RYQIGA--DSALFSQD 184
T ++ F F ++ W G F+ R GA
Sbjct: 190 CKELRDPVTSGLNTSVVFGFLNLVLWVGNLWFVFKETGWAAPFLRAPPGAPEKQPAPGDA 249
Query: 185 YMDPS----------QDSSMPYAPYVEPTGPDPAGMGGTYQQPANTFDTEPQGYQSQG 232
Y D QDS P Y +P PAG GG+ P D QGY QG
Sbjct: 250 YGDAGYGQGPGGYGPQDSYGPQGGY-QPDYGQPAGSGGSGYGPQG--DYGQQGYGPQG 304
>gi|31657096 chemokine-like factor superfamily 4 isoform 2 [Homo
sapiens]
Length = 208
Score = 30.8 bits (68), Expect = 1.0
Identities = 30/108 (27%), Positives = 46/108 (42%), Gaps = 21/108 (19%)
Query: 67 ACSYGVAVGVLAFLTCLLYLALDVYFPQISSVKDRKKAVLSDIGVSAFWAFLWFVGFCYL 126
+CS V GVL + L L + PQI+ L+D+ + AFL+F+ L
Sbjct: 91 SCSAFVVTGVLLIM---FSLNLHMRIPQINWN-------LTDLVNTGLSAFLFFIASIVL 140
Query: 127 ANQWQVSKPKDNPLNEGTDAARAAIAFSFFSIFTWAGQAVLAFQRYQI 174
A LN A AA+ F F + +A LA Q++++
Sbjct: 141 A-----------ALNHRAGAEIAAVIFGFLATAAYAVNTFLAVQKWRV 177
>gi|30520333 chemokine-like factor superfamily 4 isoform 1 [Homo
sapiens]
Length = 234
Score = 30.8 bits (68), Expect = 1.0
Identities = 30/108 (27%), Positives = 46/108 (42%), Gaps = 21/108 (19%)
Query: 67 ACSYGVAVGVLAFLTCLLYLALDVYFPQISSVKDRKKAVLSDIGVSAFWAFLWFVGFCYL 126
+CS V GVL + L L + PQI+ L+D+ + AFL+F+ L
Sbjct: 91 SCSAFVVTGVLLIM---FSLNLHMRIPQINWN-------LTDLVNTGLSAFLFFIASIVL 140
Query: 127 ANQWQVSKPKDNPLNEGTDAARAAIAFSFFSIFTWAGQAVLAFQRYQI 174
A LN A AA+ F F + +A LA Q++++
Sbjct: 141 A-----------ALNHRAGAEIAAVIFGFLATAAYAVNTFLAVQKWRV 177
>gi|122937337 fat storage-inducing transmembrane protein 2 [Homo
sapiens]
Length = 262
Score = 29.6 bits (65), Expect = 2.3
Identities = 17/45 (37%), Positives = 24/45 (53%), Gaps = 1/45 (2%)
Query: 72 VAVGVLAFLTCLLYLALDVYFPQIS-SVKDRKKAVLSDIGVSAFW 115
VA+G+L F+ L++L VYF +S V +LS G FW
Sbjct: 193 VALGILTFIWVLMFLCTAVYFHNLSQKVFGTLFGLLSWYGTYGFW 237
>gi|20986497 mitogen-activated protein kinase 7 isoform 1 [Homo
sapiens]
Length = 816
Score = 29.6 bits (65), Expect = 2.3
Identities = 12/26 (46%), Positives = 14/26 (53%)
Query: 188 PSQDSSMPYAPYVEPTGPDPAGMGGT 213
P Q +S P P +PTGP P G T
Sbjct: 599 PVQPTSPPPGPVAQPTGPQPQSAGST 624
>gi|209529736 mitogen-activated protein kinase 7 isoform 1 [Homo
sapiens]
Length = 816
Score = 29.6 bits (65), Expect = 2.3
Identities = 12/26 (46%), Positives = 14/26 (53%)
Query: 188 PSQDSSMPYAPYVEPTGPDPAGMGGT 213
P Q +S P P +PTGP P G T
Sbjct: 599 PVQPTSPPPGPVAQPTGPQPQSAGST 624
>gi|209529734 mitogen-activated protein kinase 7 isoform 1 [Homo
sapiens]
Length = 816
Score = 29.6 bits (65), Expect = 2.3
Identities = 12/26 (46%), Positives = 14/26 (53%)
Query: 188 PSQDSSMPYAPYVEPTGPDPAGMGGT 213
P Q +S P P +PTGP P G T
Sbjct: 599 PVQPTSPPPGPVAQPTGPQPQSAGST 624
>gi|20986499 mitogen-activated protein kinase 7 isoform 2 [Homo
sapiens]
Length = 677
Score = 29.6 bits (65), Expect = 2.3
Identities = 12/26 (46%), Positives = 14/26 (53%)
Query: 188 PSQDSSMPYAPYVEPTGPDPAGMGGT 213
P Q +S P P +PTGP P G T
Sbjct: 460 PVQPTSPPPGPVAQPTGPQPQSAGST 485
>gi|23592232 mediator complex subunit 19 [Homo sapiens]
Length = 194
Score = 28.5 bits (62), Expect = 5.2
Identities = 16/55 (29%), Positives = 21/55 (38%)
Query: 178 SALFSQDYMDPSQDSSMPYAPYVEPTGPDPAGMGGTYQQPANTFDTEPQGYQSQG 232
+ALF P +++ + P P P P GG P T T P G G
Sbjct: 5 TALFGAQADPPPPPTALGFGPGKPPPPPPPPAGGGPGTAPPPTAATAPPGADKSG 59
>gi|158303333 synaptopodin isoform B [Homo sapiens]
Length = 685
Score = 28.5 bits (62), Expect = 5.2
Identities = 17/53 (32%), Positives = 21/53 (39%), Gaps = 6/53 (11%)
Query: 185 YMDPSQDS------SMPYAPYVEPTGPDPAGMGGTYQQPANTFDTEPQGYQSQ 231
Y P QDS S PY + P P A Q P +F T G ++Q
Sbjct: 624 YTSPGQDSLQPTAVSPPYGGDISPVSPSRAWSPRAKQAPRPSFSTRNAGIEAQ 676
>gi|40353727 synaptopodin isoform A [Homo sapiens]
Length = 903
Score = 28.5 bits (62), Expect = 5.2
Identities = 17/53 (32%), Positives = 21/53 (39%), Gaps = 6/53 (11%)
Query: 185 YMDPSQDS------SMPYAPYVEPTGPDPAGMGGTYQQPANTFDTEPQGYQSQ 231
Y P QDS S PY + P P A Q P +F T G ++Q
Sbjct: 624 YTSPGQDSLQPTAVSPPYGGDISPVSPSRAWSPRAKQAPRPSFSTRNAGIEAQ 676
>gi|25470886 DAZ associated protein 1 isoform b [Homo sapiens]
Length = 407
Score = 28.1 bits (61), Expect = 6.7
Identities = 15/38 (39%), Positives = 18/38 (47%)
Query: 175 GADSALFSQDYMDPSQDSSMPYAPYVEPTGPDPAGMGG 212
G D + F Q + DPSQ P V +G PAG G
Sbjct: 353 GQDLSGFGQGFSDPSQQPPSYGGPSVPGSGGPPAGGSG 390
>gi|116256350 tuberous sclerosis 2 isoform 4 [Homo sapiens]
Length = 1740
Score = 27.7 bits (60), Expect = 8.8
Identities = 14/30 (46%), Positives = 17/30 (56%), Gaps = 4/30 (13%)
Query: 184 DYMDPSQDS----SMPYAPYVEPTGPDPAG 209
DYM+P + S S P +P P GP PAG
Sbjct: 647 DYMEPERGSEKKTSGPLSPPTGPPGPAPAG 676
>gi|116256352 tuberous sclerosis 2 isoform 1 [Homo sapiens]
Length = 1807
Score = 27.7 bits (60), Expect = 8.8
Identities = 14/30 (46%), Positives = 17/30 (56%), Gaps = 4/30 (13%)
Query: 184 DYMDPSQDS----SMPYAPYVEPTGPDPAG 209
DYM+P + S S P +P P GP PAG
Sbjct: 647 DYMEPERGSEKKTSGPLSPPTGPPGPAPAG 676
>gi|167412124 tuberous sclerosis 2 isoform 5 [Homo sapiens]
Length = 1784
Score = 27.7 bits (60), Expect = 8.8
Identities = 14/30 (46%), Positives = 17/30 (56%), Gaps = 4/30 (13%)
Query: 184 DYMDPSQDS----SMPYAPYVEPTGPDPAG 209
DYM+P + S S P +P P GP PAG
Sbjct: 647 DYMEPERGSEKKTSGPLSPPTGPPGPAPAG 676
>gi|13236497 5-hydroxytryptamine receptor 5A [Homo sapiens]
Length = 357
Score = 27.7 bits (60), Expect = 8.8
Identities = 25/86 (29%), Positives = 40/86 (46%), Gaps = 6/86 (6%)
Query: 27 ILRVVSWLFSIVVFGSIVNEGYLNSASEGEEFCIYNRNPNACSYGVAVGVLAF---LTCL 83
++ ++W S V+ + + G+ + SEG E C +R P SY V V AF L +
Sbjct: 160 VMIALTWALSAVISLAPLLFGWGETYSEGSEECQVSREP---SYAVFSTVGAFYLPLCVV 216
Query: 84 LYLALDVYFPQISSVKDRKKAVLSDI 109
L++ +Y V RK +S I
Sbjct: 217 LFVYWKIYKAAKFRVGSRKTNSVSPI 242
>gi|32261332 seizure related 6 homolog (mouse)-like precursor [Homo
sapiens]
Length = 1024
Score = 27.7 bits (60), Expect = 8.8
Identities = 13/41 (31%), Positives = 17/41 (41%)
Query: 192 SSMPYAPYVEPTGPDPAGMGGTYQQPANTFDTEPQGYQSQG 232
+S PY + P P+P G Q A DT P +G
Sbjct: 206 TSQPYVAHTLPQRPEPGEPGPDMAQEAPQEDTSPMALMDKG 246
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.321 0.137 0.431
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9,519,867
Number of Sequences: 37866
Number of extensions: 406341
Number of successful extensions: 1193
Number of sequences better than 10.0: 25
Number of HSP's better than 10.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 12
Number of HSP's that attempted gapping in prelim test: 1170
Number of HSP's gapped (non-prelim): 28
length of query: 233
length of database: 18,247,518
effective HSP length: 99
effective length of query: 134
effective length of database: 14,498,784
effective search space: 1942837056
effective search space used: 1942837056
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 60 (27.7 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.