Guide to the Human Genome
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Name: HTR5A Sequence: fasta or formatted (357aa) NCBI GI: 13236497
Description:

5-hydroxytryptamine receptor 5A

Referenced in:

Serotonin

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             7.8         28           2
 C cysteine            2.8         10           2
 D aspartate           2.5          9           2
 E glutamate           3.9         14           2
 F phenylalanine       6.2         22           2
 G glycine             3.9         14           1
 H histidine           2.0          7           1
 I isoleucine          5.0         18           1
 K lysine              3.4         12           1
 L leucine            12.9         46           2
 M methionine          2.0          7           1
 N asparagine          3.6         13           1
 P proline             4.8         17           1
 Q glutamine           2.5          9           1
 R arginine            5.3         19           2
 S serine              9.5         34           2
 T threonine           6.2         22           1
 V valine              9.5         34           2
 W tryptophan          3.4         12           1
 Y tyrosine            2.8         10           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   5-hydroxytryptamine receptor 5A 
HTR1F                 0.270   5-hydroxytryptamine (serotonin) receptor 1F 
HTR1B                 0.270   5-hydroxytryptamine (serotonin) receptor 1B 
HTR1D                 0.268   5-hydroxytryptamine (serotonin) receptor 1D 
HTR1E                 0.259   5-hydroxytryptamine (serotonin) receptor 1E 
HTR7                  0.256   5-hydroxytryptamine receptor 7 isoform b 
HTR7                  0.256   5-hydroxytryptamine receptor 7 isoform d 
HTR7                  0.256   5-hydroxytryptamine receptor 7 isoform a 
HTR1A                 0.246   5-hydroxytryptamine (serotonin) receptor 1A 
ADRA1A                0.242   alpha-1A-adrenergic receptor isoform 4 
ADRA1A                0.242   alpha-1A-adrenergic receptor isoform 1 
ADRA1A                0.242   alpha-1A-adrenergic receptor isoform 2 
ADRA1A                0.242   alpha-1A-adrenergic receptor isoform 3 
ADRA1B                0.229   alpha-1B-adrenergic receptor 
ADRA1D                0.217   alpha-1D-adrenergic receptor 
DRD1                  0.210   dopamine receptor D1 
DRD3                  0.205   dopamine receptor D3 isoform e 
DRD5                  0.202   dopamine receptor D5 
HTR6                  0.200   5-hydroxytryptamine (serotonin) receptor 6 
ADRB1                 0.192   beta-1-adrenergic receptor 
HTR2C                 0.189   5-hydroxytryptamine (serotonin) receptor 2C 
ADRB3                 0.187   adrenergic, beta-3-, receptor 
DRD3                  0.186   dopamine receptor D3 isoform a 
HTR2A                 0.186   5-hydroxytryptamine (serotonin) receptor 2A 
HRH2                  0.179   histamine receptor H2 isoform 1 
HRH2                  0.179   histamine receptor H2 isoform 2 
HTR4                  0.175   serotonin 5-HT4 receptor isoform n 
HTR4                  0.175   serotonin 5-HT4 receptor isoform i 
HTR4                  0.175   serotonin 5-HT4 receptor isoform d 
HTR4                  0.175   serotonin 5-HT4 receptor isoform a 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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