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Search of human proteins with 115334675
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|115334675 hypothetical protein LOC90268 [Homo sapiens]
(352 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|115334675 hypothetical protein LOC90268 [Homo sapiens] 721 0.0
gi|9506641 hypothetical protein LOC54491 [Homo sapiens] 228 6e-60
gi|117676384 splicing factor, arginine/serine-rich 2, interactin... 37 0.020
gi|59806361 hypothetical protein LOC387104 [Homo sapiens] 36 0.045
gi|33457336 chromosome 14 open reading frame 4 [Homo sapiens] 36 0.045
gi|21264339 SRY (sex determining region Y)-box 12 [Homo sapiens] 33 0.29
gi|160707881 formin 2 [Homo sapiens] 33 0.38
gi|239742114 PREDICTED: similar to hCG2023245 [Homo sapiens] 33 0.50
gi|58530845 zyxin [Homo sapiens] 33 0.50
gi|4508047 zyxin [Homo sapiens] 33 0.50
gi|12962939 OTU domain, ubiquitin aldehyde binding 2 [Homo sapiens] 32 0.66
gi|239749578 PREDICTED: ankyrin repeat domain 18A [Homo sapiens] 32 0.66
gi|5453998 importin 7 [Homo sapiens] 32 0.86
gi|4759276 RNA, U3 small nucleolar interacting protein 2 [Homo s... 32 1.1
gi|188219577 ring finger protein 19B isoform a [Homo sapiens] 32 1.1
gi|188219579 ring finger protein 19B isoform b [Homo sapiens] 32 1.1
gi|148839382 ring finger protein 169 [Homo sapiens] 32 1.1
gi|239755571 PREDICTED: hypothetical protein [Homo sapiens] 31 1.5
gi|239744417 PREDICTED: similar to hCG2023245 [Homo sapiens] 31 1.5
gi|154800437 endothelin 1 [Homo sapiens] 31 1.9
gi|21687218 CD300 molecule-like family member g [Homo sapiens] 31 1.9
gi|116812616 RecQ protein-like 4 [Homo sapiens] 30 2.5
gi|23397566 transmembrane protein 151A [Homo sapiens] 30 2.5
gi|86792774 dipeptidyl-peptidase 6 isoform 1 [Homo sapiens] 30 3.3
gi|239746922 PREDICTED: similar to cancer/testis antigen family ... 30 3.3
gi|156766047 GRB10 interacting GYF protein 2 isoform c [Homo sap... 30 4.3
gi|156766045 GRB10 interacting GYF protein 2 isoform a [Homo sap... 30 4.3
gi|156766043 GRB10 interacting GYF protein 2 isoform b [Homo sap... 30 4.3
gi|42476299 GRB10 interacting GYF protein 2 isoform b [Homo sapi... 30 4.3
gi|56549696 E1A binding protein p400 [Homo sapiens] 30 4.3
>gi|115334675 hypothetical protein LOC90268 [Homo sapiens]
Length = 352
Score = 721 bits (1860), Expect = 0.0
Identities = 352/352 (100%), Positives = 352/352 (100%)
Query: 1 MSRGTMPQPEAWPGASCAETPAREAAATARDGGKAAASGQPRPEMQCPAEHEEDMYRAAD 60
MSRGTMPQPEAWPGASCAETPAREAAATARDGGKAAASGQPRPEMQCPAEHEEDMYRAAD
Sbjct: 1 MSRGTMPQPEAWPGASCAETPAREAAATARDGGKAAASGQPRPEMQCPAEHEEDMYRAAD 60
Query: 61 EIEKEKELLIHERGASEPRLSVAPEMDIMDYCKKEWRGNTQKATCMKMGYEEVSQKFTSI 120
EIEKEKELLIHERGASEPRLSVAPEMDIMDYCKKEWRGNTQKATCMKMGYEEVSQKFTSI
Sbjct: 61 EIEKEKELLIHERGASEPRLSVAPEMDIMDYCKKEWRGNTQKATCMKMGYEEVSQKFTSI 120
Query: 121 RRVRGDNYCALRATLFQAMSQAVGLPPWLQDPELMLLPEKLISKYNWIKQWKLGLKFDGK 180
RRVRGDNYCALRATLFQAMSQAVGLPPWLQDPELMLLPEKLISKYNWIKQWKLGLKFDGK
Sbjct: 121 RRVRGDNYCALRATLFQAMSQAVGLPPWLQDPELMLLPEKLISKYNWIKQWKLGLKFDGK 180
Query: 181 NEDLVDKIKESLTLLRKKWAGLAEMRTAEARQIACDELFTNEAEEYSLYEAVKFLMLNRA 240
NEDLVDKIKESLTLLRKKWAGLAEMRTAEARQIACDELFTNEAEEYSLYEAVKFLMLNRA
Sbjct: 181 NEDLVDKIKESLTLLRKKWAGLAEMRTAEARQIACDELFTNEAEEYSLYEAVKFLMLNRA 240
Query: 241 IELYNDKEKGKEVPFFSVLLFARDTSNDPGQLLRNHLNQVGHTGGLEQVEMFLLAYAVRH 300
IELYNDKEKGKEVPFFSVLLFARDTSNDPGQLLRNHLNQVGHTGGLEQVEMFLLAYAVRH
Sbjct: 241 IELYNDKEKGKEVPFFSVLLFARDTSNDPGQLLRNHLNQVGHTGGLEQVEMFLLAYAVRH 300
Query: 301 TIQVYRLSKYNTEEFITVYPTDPPKDWPVVTLIAEDDRHYNIPVRVCEETSL 352
TIQVYRLSKYNTEEFITVYPTDPPKDWPVVTLIAEDDRHYNIPVRVCEETSL
Sbjct: 301 TIQVYRLSKYNTEEFITVYPTDPPKDWPVVTLIAEDDRHYNIPVRVCEETSL 352
>gi|9506641 hypothetical protein LOC54491 [Homo sapiens]
Length = 356
Score = 228 bits (581), Expect = 6e-60
Identities = 112/270 (41%), Positives = 173/270 (64%), Gaps = 7/270 (2%)
Query: 80 LSVAPEMDIMDYCKKEWRGNTQKATCMKMGYEEVSQK--FTSIRRVRGDNYCALRATLFQ 137
LSV E+D++ YC +EW+G T + M+ YEE+ + +R+VR DNY ALR+ LFQ
Sbjct: 88 LSVEAEVDLLSYCAREWKGETPRNKLMRKAYEELFWRHHIKCVRQVRRDNYDALRSVLFQ 147
Query: 138 AMSQAVGLPPWLQDPELMLLPEKLISKY--NWIKQWKLGL-KFDGKNEDLVDKIKESLTL 194
SQ + P W+++ +++ LPEKL+ NWI+Q+ G K+ G N + K+++ + L
Sbjct: 148 IFSQGISFPSWMKEKDIVKLPEKLLFSQGCNWIQQYSFGPEKYTGSN--VFGKLRKYVEL 205
Query: 195 LRKKWAGLAEMRTAEARQIACDELFTNEAEEYSLYEAVKFLMLNRAIELYNDKEKGKEVP 254
L+ +W +R R C+ LF++ EY LYEA+KF+ML + E+Y + K +P
Sbjct: 206 LKTQWTEFNGIRDYHKRGSMCNTLFSDAILEYKLYEALKFIMLYQVTEVYEQMKTKKVIP 265
Query: 255 FFSVLLFARDTSNDPGQLLRNHLNQVGHTGGLEQVEMFLLAYAVRHTIQVYRLSKYNTEE 314
LLF+R+TS+DP + NHLN VG T GLEQ++MF+L Y++ I+V+RL K+N+ +
Sbjct: 266 SLFRLLFSRETSSDPLSFMMNHLNSVGDTCGLEQIDMFILGYSLEVKIKVFRLFKFNSRD 325
Query: 315 FITVYPTDPPKDWPVVTLIAEDDRHYNIPV 344
F YP +P +DWP ++L+ E+DRHY+IPV
Sbjct: 326 FEVCYPEEPLRDWPEISLLTENDRHYHIPV 355
>gi|117676384 splicing factor, arginine/serine-rich 2, interacting
protein [Homo sapiens]
Length = 1463
Score = 37.4 bits (85), Expect = 0.020
Identities = 32/131 (24%), Positives = 54/131 (41%), Gaps = 7/131 (5%)
Query: 1 MSRGTMPQPEAWPGASCAETPAREAAATARDGGKAAASGQPRPEMQCPAEHEEDMYRAAD 60
MS +P P A PG + ++ KA+ + E + E +AD
Sbjct: 1314 MSTPVLPAPTAAPGNTGMVQGPSSGNTSSSSHSKASNAAVKLAESKVSVAVEA----SAD 1369
Query: 61 EIEKEKELLIHERGASEPRLSVAPEMDIMDYCKKEWRGNTQKA---TCMKMGYEEVSQKF 117
+ +K+L I E+ A E +L++ P D K+E++ +KA C E S K
Sbjct: 1370 SSKTDKKLQIQEKAAQEVKLAIKPFYQNKDITKEEYKEIVRKAVDKVCHSKSGEVNSTKV 1429
Query: 118 TSIRRVRGDNY 128
++ + D Y
Sbjct: 1430 ANLVKAYVDKY 1440
>gi|59806361 hypothetical protein LOC387104 [Homo sapiens]
Length = 947
Score = 36.2 bits (82), Expect = 0.045
Identities = 23/71 (32%), Positives = 36/71 (50%), Gaps = 6/71 (8%)
Query: 5 TMPQPEAWPGASCAETPAREAAATARDGGKAAA---SGQPRPEMQCPAEHEEDMYRAADE 61
T+ A P A+ AE P + A +A GG AA S QP P+ + +E+M ++
Sbjct: 302 TLAVASASPMAAAAEGPQQSAEGSASGGGMQAAAPPSSQPHPQQ---LQEQEEMQEEMEK 358
Query: 62 IEKEKELLIHE 72
+ +E E L +E
Sbjct: 359 LREENETLKNE 369
>gi|33457336 chromosome 14 open reading frame 4 [Homo sapiens]
Length = 796
Score = 36.2 bits (82), Expect = 0.045
Identities = 22/81 (27%), Positives = 38/81 (46%), Gaps = 4/81 (4%)
Query: 4 GTMPQPEAWPGASCAETPAREAAATARDGGKAAASGQPRPEMQCPAEHEEDMYRAADEIE 63
G P P G A+EAAA A AAA+ Q + + Q ++ + + +
Sbjct: 67 GRSPGPPPPVGVKTVALSAKEAAAAAAAAAAAAAAAQQQQQQQ----QQQQQQQQQQQQQ 122
Query: 64 KEKELLIHERGASEPRLSVAP 84
++++ L H G+S+P + AP
Sbjct: 123 QQQQQLNHVDGSSKPAVLAAP 143
>gi|21264339 SRY (sex determining region Y)-box 12 [Homo sapiens]
Length = 315
Score = 33.5 bits (75), Expect = 0.29
Identities = 21/62 (33%), Positives = 27/62 (43%), Gaps = 3/62 (4%)
Query: 7 PQPEAW---PGASCAETPAREAAATARDGGKAAASGQPRPEMQCPAEHEEDMYRAADEIE 63
P E W P A A A + +G AAA+ P P E EE+ AA+E E
Sbjct: 182 PGRELWRMVPAGRAARGQAERAQGPSGEGAAAAAAASPTPSEDEEPEEEEEEAAAAEEGE 241
Query: 64 KE 65
+E
Sbjct: 242 EE 243
>gi|160707881 formin 2 [Homo sapiens]
Length = 1722
Score = 33.1 bits (74), Expect = 0.38
Identities = 23/69 (33%), Positives = 29/69 (42%), Gaps = 3/69 (4%)
Query: 2 SRGTMPQPEAWPGASCAETPAREAAATARDGGKAAASGQPR---PEMQCPAEHEEDMYRA 58
S P PEA PG A P R A T +G + A PR E P E+ R
Sbjct: 319 SSTAFPFPEAGPGEEAAGAPVRGAGDTDEEGEEDAFEDAPRGSPGEEWAPEVGEDAPQRL 378
Query: 59 ADEIEKEKE 67
+E E+E +
Sbjct: 379 GEEPEEEAQ 387
>gi|239742114 PREDICTED: similar to hCG2023245 [Homo sapiens]
Length = 329
Score = 32.7 bits (73), Expect = 0.50
Identities = 20/66 (30%), Positives = 33/66 (50%), Gaps = 5/66 (7%)
Query: 13 PGASCAETPAREAAATARDGGKAAASGQPRPEMQCPAEHEEDMYRAADEIEKEKELLIHE 72
PG S + R A A G + A+G+PR P E+D+ E+++ L+ E
Sbjct: 144 PGPSSSPGAGRAPRAMASPSGSSEATGKPRGRDGGPRREEDDV-----PPEEKRLRLLLE 198
Query: 73 RGASEP 78
RG+++P
Sbjct: 199 RGSAQP 204
>gi|58530845 zyxin [Homo sapiens]
Length = 572
Score = 32.7 bits (73), Expect = 0.50
Identities = 17/78 (21%), Positives = 37/78 (47%), Gaps = 1/78 (1%)
Query: 1 MSRGTMPQPEAWPGASCAETPAREAAATARDGGKAAASGQPRPEMQCPAEHEEDMYRAAD 60
+S G +P P A P +S + T K+ +S QP P++ PA+ + +
Sbjct: 168 VSSGYVPPPVATPFSSKSSTKPAAGGTAPLPPWKSPSSSQPLPQVPAPAQ-SQTQFHVQP 226
Query: 61 EIEKEKELLIHERGASEP 78
+ + + ++ +H + ++P
Sbjct: 227 QPQPKPQVQLHVQSQTQP 244
>gi|4508047 zyxin [Homo sapiens]
Length = 572
Score = 32.7 bits (73), Expect = 0.50
Identities = 17/78 (21%), Positives = 37/78 (47%), Gaps = 1/78 (1%)
Query: 1 MSRGTMPQPEAWPGASCAETPAREAAATARDGGKAAASGQPRPEMQCPAEHEEDMYRAAD 60
+S G +P P A P +S + T K+ +S QP P++ PA+ + +
Sbjct: 168 VSSGYVPPPVATPFSSKSSTKPAAGGTAPLPPWKSPSSSQPLPQVPAPAQ-SQTQFHVQP 226
Query: 61 EIEKEKELLIHERGASEP 78
+ + + ++ +H + ++P
Sbjct: 227 QPQPKPQVQLHVQSQTQP 244
>gi|12962939 OTU domain, ubiquitin aldehyde binding 2 [Homo sapiens]
Length = 234
Score = 32.3 bits (72), Expect = 0.66
Identities = 13/34 (38%), Positives = 22/34 (64%)
Query: 111 EEVSQKFTSIRRVRGDNYCALRATLFQAMSQAVG 144
EE+S++FT+IR+ +GD C RA + + +G
Sbjct: 33 EELSKRFTAIRKTKGDGNCFYRALGYSYLESLLG 66
>gi|239749578 PREDICTED: ankyrin repeat domain 18A [Homo sapiens]
Length = 1002
Score = 32.3 bits (72), Expect = 0.66
Identities = 40/166 (24%), Positives = 66/166 (39%), Gaps = 22/166 (13%)
Query: 57 RAADEIEKEKELLIHERGASEPRLSVAPEMDIMDYCKKE--WRGNTQKATCMKMGYEEVS 114
RA EIEK +E+ + ++ E +L + + KKE + K + MK YEEV+
Sbjct: 829 RAVQEIEKLEEIHLQKQAEYEKQLEQLNKDNTASLKKKELTLKDVECKFSKMKTAYEEVT 888
Query: 115 QKFTSIRR----------------VRGDNYCALRAT-LF---QAMSQAVGLPPWLQDPEL 154
+ + ++ D A+ +T LF + M + P DPEL
Sbjct: 889 TELEEFKEAFAGAVKANNSMSKKLMKSDKKIAVISTKLFMEKERMEYFLSTLPMRPDPEL 948
Query: 155 MLLPEKLISKYNWIKQWKLGLKFDGKNEDLVDKIKESLTLLRKKWA 200
+ + N K+ ++ N + K SLT L +WA
Sbjct: 949 PCVENLNSIELNRKYIPKMAIRIPTSNPQTSNNCKNSLTELLLRWA 994
>gi|5453998 importin 7 [Homo sapiens]
Length = 1038
Score = 32.0 bits (71), Expect = 0.86
Identities = 20/68 (29%), Positives = 38/68 (55%), Gaps = 1/68 (1%)
Query: 286 LEQVEMFLLAYA-VRHTIQVYRLSKYNTEEFITVYPTDPPKDWPVVTLIAEDDRHYNIPV 344
L Q ++F + YA V++T+ + +++ N E+I + T +D P TL E+D +P
Sbjct: 198 LIQKQIFKIFYALVQYTLPLELINQQNLTEWIEILKTVVNRDVPNETLQVEEDDRPELPW 257
Query: 345 RVCEETSL 352
C++ +L
Sbjct: 258 WKCKKWAL 265
>gi|4759276 RNA, U3 small nucleolar interacting protein 2 [Homo
sapiens]
Length = 475
Score = 31.6 bits (70), Expect = 1.1
Identities = 24/76 (31%), Positives = 36/76 (47%), Gaps = 4/76 (5%)
Query: 8 QPEAWPGASCAETPAREAAATARDGGKAAASGQPRPEMQCPAEHEEDMYRAADEIEKEKE 67
+P + GA R A +A D GK+ G+ E+ +E E R +E E+E+E
Sbjct: 12 KPASGAGAGAGAGKRRRKADSAGDRGKSKGGGKMNEEISSDSESESLAPRKPEE-EEEEE 70
Query: 68 LLIHERGASEPRLSVA 83
L E A E +L +A
Sbjct: 71 L---EETAQEKKLRLA 83
>gi|188219577 ring finger protein 19B isoform a [Homo sapiens]
Length = 732
Score = 31.6 bits (70), Expect = 1.1
Identities = 20/46 (43%), Positives = 23/46 (50%), Gaps = 4/46 (8%)
Query: 7 PQPEAWPGASCAETPAREAAATAR---DGGKAAASGQP-RPEMQCP 48
P PEA P AE A AAA A D +AA G P E++CP
Sbjct: 75 PPPEALPAEPAAEAEAEAAAAAAEPGFDDEEAAEGGGPGAEEVECP 120
>gi|188219579 ring finger protein 19B isoform b [Homo sapiens]
Length = 587
Score = 31.6 bits (70), Expect = 1.1
Identities = 20/46 (43%), Positives = 23/46 (50%), Gaps = 4/46 (8%)
Query: 7 PQPEAWPGASCAETPAREAAATAR---DGGKAAASGQP-RPEMQCP 48
P PEA P AE A AAA A D +AA G P E++CP
Sbjct: 75 PPPEALPAEPAAEAEAEAAAAAAEPGFDDEEAAEGGGPGAEEVECP 120
>gi|148839382 ring finger protein 169 [Homo sapiens]
Length = 708
Score = 31.6 bits (70), Expect = 1.1
Identities = 17/52 (32%), Positives = 24/52 (46%)
Query: 17 CAETPAREAAATARDGGKAAASGQPRPEMQCPAEHEEDMYRAADEIEKEKEL 68
CA E RDGG AAA +P E + + ++RA ++ K EL
Sbjct: 132 CARRSQPERCRPRRDGGAAAAGPRPEQEPRAAPAEPDFIFRAPIKLSKPGEL 183
>gi|239755571 PREDICTED: hypothetical protein [Homo sapiens]
Length = 261
Score = 31.2 bits (69), Expect = 1.5
Identities = 19/66 (28%), Positives = 32/66 (48%), Gaps = 5/66 (7%)
Query: 13 PGASCAETPAREAAATARDGGKAAASGQPRPEMQCPAEHEEDMYRAADEIEKEKELLIHE 72
PG S + R A A G + A+G+PR P E+D+ E+++ L+ E
Sbjct: 112 PGPSSSPGAGRAPGAMASPSGSSKATGKPRGRDGRPRREEDDV-----TPEEKRLRLLLE 166
Query: 73 RGASEP 78
G+++P
Sbjct: 167 EGSAQP 172
>gi|239744417 PREDICTED: similar to hCG2023245 [Homo sapiens]
Length = 364
Score = 31.2 bits (69), Expect = 1.5
Identities = 19/66 (28%), Positives = 32/66 (48%), Gaps = 5/66 (7%)
Query: 13 PGASCAETPAREAAATARDGGKAAASGQPRPEMQCPAEHEEDMYRAADEIEKEKELLIHE 72
PG S + R A A G + A+G+PR P E+D+ E+++ L+ E
Sbjct: 215 PGPSSSPGAGRAPGAMASPSGSSKATGKPRGRDGRPRREEDDV-----TPEEKRLRLLLE 269
Query: 73 RGASEP 78
G+++P
Sbjct: 270 EGSAQP 275
>gi|154800437 endothelin 1 [Homo sapiens]
Length = 212
Score = 30.8 bits (68), Expect = 1.9
Identities = 19/76 (25%), Positives = 35/76 (46%), Gaps = 2/76 (2%)
Query: 85 EMDIMDYCKKEWRGNTQKATCMKMGYEEVSQKFTSIRRVRGDNYCALRATLFQAMSQAVG 144
E+ D +K+W + + C K+G + + Q+ R++R + LR T + M +V
Sbjct: 128 ELRAEDIMEKDWNNHKKGKDCSKLGKKCIYQQLVRGRKIRRSSEEHLRQTRSETMRNSV- 186
Query: 145 LPPWLQDPELMLLPEK 160
DP+L P +
Sbjct: 187 -KSSFHDPKLKGKPSR 201
>gi|21687218 CD300 molecule-like family member g [Homo sapiens]
Length = 332
Score = 30.8 bits (68), Expect = 1.9
Identities = 14/45 (31%), Positives = 21/45 (46%)
Query: 4 GTMPQPEAWPGASCAETPAREAAATARDGGKAAASGQPRPEMQCP 48
GT P P P A + P + + +A D A +SG +P + P
Sbjct: 200 GTSPHPATSPPAGSSRPPMQLNSTSAEDTSPALSSGSSKPRVSIP 244
>gi|116812616 RecQ protein-like 4 [Homo sapiens]
Length = 1208
Score = 30.4 bits (67), Expect = 2.5
Identities = 41/169 (24%), Positives = 69/169 (40%), Gaps = 9/169 (5%)
Query: 6 MPQPEAWPGASCAETPAREAAATARDGGKAAASGQPRPEMQCPAEHEEDMY---RAADEI 62
+P P AETPA A + G +A GQ R M+ + + A +
Sbjct: 451 LPLYSLGPSGQLAETPAEVFQALEQLGHQAFRPGQERAVMRILSGISTLLVLPTGAGKSL 510
Query: 63 EKEKELLIHERGASEPRLSVAPEMDIMDYCKKEWRGNTQKATCMKMGYEEVSQKFTSIRR 122
+ L++ R + L V+P + +MD + KA C+ G Q+ + +++
Sbjct: 511 CYQLPALLYSRRSPCLTLVVSPLLSLMD-DQVSGLPPCLKAACIHSGMTR-KQRESVLQK 568
Query: 123 VRGDNYCALRATLFQAMSQAVGLPPWLQDPELMLLPEKLISKYNWIKQW 171
+R L T +A+ A GLPP Q P + I + + + QW
Sbjct: 569 IRAAQVHVLMLTP-EALVGAGGLPPAAQLPPVAF---ACIDEAHCLSQW 613
>gi|23397566 transmembrane protein 151A [Homo sapiens]
Length = 468
Score = 30.4 bits (67), Expect = 2.5
Identities = 21/76 (27%), Positives = 32/76 (42%), Gaps = 3/76 (3%)
Query: 197 KKWAGLAEMRTAEARQIACDELFTNEAEEYSLYEAVKFLMLNRAIELYNDKEKG---KEV 253
K+ GLAE R C + EAE L + +F N ++ Y + +G K+V
Sbjct: 205 KELVGLAEHAATRLRFTKCFSFGSAEAEASYLTQRARFFSANEGLDDYLEAREGMHLKDV 264
Query: 254 PFFSVLLFARDTSNDP 269
F L+ D + P
Sbjct: 265 DFRESLMVFADPRSPP 280
>gi|86792774 dipeptidyl-peptidase 6 isoform 1 [Homo sapiens]
Length = 865
Score = 30.0 bits (66), Expect = 3.3
Identities = 16/51 (31%), Positives = 25/51 (49%)
Query: 4 GTMPQPEAWPGASCAETPAREAAATARDGGKAAASGQPRPEMQCPAEHEED 54
G P+ + GA A+ AA R GG A G+PR + Q ++ +E+
Sbjct: 30 GQGPEEDGGAGAKPLGPRAQAAAPRERGGGGGGAGGRPRFQYQARSDGDEE 80
>gi|239746922 PREDICTED: similar to cancer/testis antigen family
147, member B1 isoform 2 [Homo sapiens]
Length = 294
Score = 30.0 bits (66), Expect = 3.3
Identities = 33/100 (33%), Positives = 44/100 (44%), Gaps = 13/100 (13%)
Query: 19 ETPAREAAATARDGGKAAASGQPRPEMQCPAEHEEDMYRAADEIEKEKELLIHERGASEP 78
E PA + A AR+ + A +P E A EE AA+E KE E E A EP
Sbjct: 192 EVPA-DLAEMAREPAEEPAEEKPTEE----AAEEELAEEAAEEPAKE-EPAAEEESAEEP 245
Query: 79 RL--SVAPEMDIMDYCKKEWRGNTQKATCMKMGYEEVSQK 116
+ APE ++ Y ++W Q A G EE +K
Sbjct: 246 ATEEAAAPE-EVTKYQHEKWDEEAQDAA----GKEEKEEK 280
>gi|156766047 GRB10 interacting GYF protein 2 isoform c [Homo
sapiens]
Length = 1293
Score = 29.6 bits (65), Expect = 4.3
Identities = 19/80 (23%), Positives = 33/80 (41%), Gaps = 7/80 (8%)
Query: 5 TMPQPEAWPGASCAETPAREAAATAR-------DGGKAAASGQPRPEMQCPAEHEEDMYR 57
T QP W G S + P + KAA Q R E + A+ EE+ +
Sbjct: 691 TASQPTVWEGGSVWDLPLDTTTPGPALEQLQQLEKAKAAKLEQERREAEMRAKREEEERK 750
Query: 58 AADEIEKEKELLIHERGASE 77
+E+ +++E ++ + E
Sbjct: 751 RQEELRRQQEEILRRQQEEE 770
>gi|156766045 GRB10 interacting GYF protein 2 isoform a [Homo
sapiens]
Length = 1320
Score = 29.6 bits (65), Expect = 4.3
Identities = 19/80 (23%), Positives = 33/80 (41%), Gaps = 7/80 (8%)
Query: 5 TMPQPEAWPGASCAETPAREAAATAR-------DGGKAAASGQPRPEMQCPAEHEEDMYR 57
T QP W G S + P + KAA Q R E + A+ EE+ +
Sbjct: 718 TASQPTVWEGGSVWDLPLDTTTPGPALEQLQQLEKAKAAKLEQERREAEMRAKREEEERK 777
Query: 58 AADEIEKEKELLIHERGASE 77
+E+ +++E ++ + E
Sbjct: 778 RQEELRRQQEEILRRQQEEE 797
>gi|156766043 GRB10 interacting GYF protein 2 isoform b [Homo
sapiens]
Length = 1299
Score = 29.6 bits (65), Expect = 4.3
Identities = 19/80 (23%), Positives = 33/80 (41%), Gaps = 7/80 (8%)
Query: 5 TMPQPEAWPGASCAETPAREAAATAR-------DGGKAAASGQPRPEMQCPAEHEEDMYR 57
T QP W G S + P + KAA Q R E + A+ EE+ +
Sbjct: 697 TASQPTVWEGGSVWDLPLDTTTPGPALEQLQQLEKAKAAKLEQERREAEMRAKREEEERK 756
Query: 58 AADEIEKEKELLIHERGASE 77
+E+ +++E ++ + E
Sbjct: 757 RQEELRRQQEEILRRQQEEE 776
>gi|42476299 GRB10 interacting GYF protein 2 isoform b [Homo
sapiens]
Length = 1299
Score = 29.6 bits (65), Expect = 4.3
Identities = 19/80 (23%), Positives = 33/80 (41%), Gaps = 7/80 (8%)
Query: 5 TMPQPEAWPGASCAETPAREAAATAR-------DGGKAAASGQPRPEMQCPAEHEEDMYR 57
T QP W G S + P + KAA Q R E + A+ EE+ +
Sbjct: 697 TASQPTVWEGGSVWDLPLDTTTPGPALEQLQQLEKAKAAKLEQERREAEMRAKREEEERK 756
Query: 58 AADEIEKEKELLIHERGASE 77
+E+ +++E ++ + E
Sbjct: 757 RQEELRRQQEEILRRQQEEE 776
>gi|56549696 E1A binding protein p400 [Homo sapiens]
Length = 3122
Score = 29.6 bits (65), Expect = 4.3
Identities = 14/43 (32%), Positives = 23/43 (53%)
Query: 7 PQPEAWPGASCAETPAREAAATARDGGKAAASGQPRPEMQCPA 49
P+ + +S A +PA A A+ +A+ GQP P+ Q P+
Sbjct: 1497 PRHQPASASSTAASPAHPAKLRAQTTAQASTPGQPPPQPQAPS 1539
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.317 0.132 0.399
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 14,349,047
Number of Sequences: 37866
Number of extensions: 650046
Number of successful extensions: 2724
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 21
Number of HSP's successfully gapped in prelim test: 30
Number of HSP's that attempted gapping in prelim test: 2682
Number of HSP's gapped (non-prelim): 64
length of query: 352
length of database: 18,247,518
effective HSP length: 103
effective length of query: 249
effective length of database: 14,347,320
effective search space: 3572482680
effective search space used: 3572482680
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 62 (28.5 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.