Guide to the Human Genome
Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help
Name: FAM105A Sequence: fasta or formatted (356aa) NCBI GI: 9506641
Description:

hypothetical protein LOC54491

Not currently referenced in the text

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             5.1         18           2
 C cysteine            2.0          7           1
 D aspartate           3.9         14           1
 E glutamate           7.0         25           2
 F phenylalanine       6.5         23           1
 G glycine             4.5         16           1
 H histidine           2.5          9           2
 I isoleucine          4.5         16           1
 K lysine              7.3         26           2
 L leucine            10.7         38           2
 M methionine          3.4         12           2
 N asparagine          3.1         11           1
 P proline             3.4         12           1
 Q glutamine           3.7         13           2
 R arginine            7.6         27           2
 S serine              7.6         27           2
 T threonine           3.9         14           1
 V valine              5.9         21           1
 W tryptophan          2.8         10           2
 Y tyrosine            4.8         17           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   hypothetical protein LOC54491 
FAM105B               0.286   hypothetical protein LOC90268 
PCSK4                 0.008   proprotein convertase subtilisin/kexin type 4 
RICS                  0.007   Rho GTPase-activating protein isoform 1 
RICS                  0.007   Rho GTPase-activating protein isoform 2 
FRMPD4                0.006   FERM and PDZ domain containing 4 
KIAA0317              0.006   hypothetical protein LOC9870 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help

Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

CSHL Press