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Search of human proteins with 114199475
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|114199475 vacuolar protein sorting 41 isoform 1 [Homo
sapiens]
(854 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|114199475 vacuolar protein sorting 41 isoform 1 [Homo sapiens] 1729 0.0
gi|114199473 vacuolar protein sorting 41 isoform 2 [Homo sapiens] 1665 0.0
gi|17978477 vacuolar protein sorting 11 [Homo sapiens] 48 4e-05
gi|17978485 vacuolar protein sorting 18 [Homo sapiens] 45 3e-04
gi|4759128 solute carrier family 24 (sodium/potassium/calcium ex... 38 0.046
gi|13376840 WD repeat domain 61 [Homo sapiens] 36 0.17
gi|242247001 clathrin, heavy polypeptide-like 1 isoform 2 [Homo ... 35 0.23
gi|242246985 clathrin, heavy polypeptide-like 1 isoform 1 [Homo ... 35 0.23
gi|239050813 lipoxygenase homology domains 1 isoform 1 [Homo sap... 35 0.30
gi|190194429 zinc finger protein 267 [Homo sapiens] 35 0.39
gi|148763345 cell division cycle 2-like 2 isoform 4 [Homo sapiens] 34 0.50
gi|148763347 cell division cycle 2-like 2 isoform 1 [Homo sapiens] 34 0.50
gi|53832007 calcium channel, voltage-dependent, L type, alpha 1F... 34 0.50
gi|16332372 cell division cycle 2-like 1 (PITSLRE proteins) isof... 34 0.50
gi|16332370 cell division cycle 2-like 1 (PITSLRE proteins) isof... 34 0.50
gi|16332364 cell division cycle 2-like 1 (PITSLRE proteins) isof... 34 0.50
gi|16332362 cell division cycle 2-like 1 (PITSLRE proteins) isof... 34 0.50
gi|16332360 cell division cycle 2-like 1 (PITSLRE proteins) isof... 34 0.50
gi|16332358 cell division cycle 2-like 1 (PITSLRE proteins) isof... 34 0.50
gi|29337286 eukaryotic translation initiation factor 2C, 3 isofo... 34 0.66
gi|29294647 eukaryotic translation initiation factor 2C, 3 isofo... 34 0.66
gi|94400919 WD repeat domain 90 [Homo sapiens] 34 0.66
gi|4758788 NADH dehydrogenase (ubiquinone) Fe-S protein 3 precur... 33 0.86
gi|94681063 bromodomain adjacent to zinc finger domain, 2B [Homo... 33 0.86
gi|4758012 clathrin heavy chain 1 [Homo sapiens] 33 1.1
gi|17975763 myelin transcription factor 1 [Homo sapiens] 33 1.5
gi|58761548 tau tubulin kinase 1 [Homo sapiens] 32 1.9
gi|18375505 APEX nuclease 1 [Homo sapiens] 32 2.5
gi|18375503 APEX nuclease 1 [Homo sapiens] 32 2.5
gi|18375501 APEX nuclease 1 [Homo sapiens] 32 2.5
>gi|114199475 vacuolar protein sorting 41 isoform 1 [Homo sapiens]
Length = 854
Score = 1729 bits (4478), Expect = 0.0
Identities = 854/854 (100%), Positives = 854/854 (100%)
Query: 1 MAEAEEQETGSLEESTDESEEEESEEEPKLKYERLSNGVTEILQKDAASCMTVHDKFLAL 60
MAEAEEQETGSLEESTDESEEEESEEEPKLKYERLSNGVTEILQKDAASCMTVHDKFLAL
Sbjct: 1 MAEAEEQETGSLEESTDESEEEESEEEPKLKYERLSNGVTEILQKDAASCMTVHDKFLAL 60
Query: 61 GTHYGKVYLLDVQGNITQKFDVSPVKINQISLDESGEHMGVCSEDGKVQVFGLYSGEEFH 120
GTHYGKVYLLDVQGNITQKFDVSPVKINQISLDESGEHMGVCSEDGKVQVFGLYSGEEFH
Sbjct: 61 GTHYGKVYLLDVQGNITQKFDVSPVKINQISLDESGEHMGVCSEDGKVQVFGLYSGEEFH 120
Query: 121 ETFDCPIKIIAVHPHFVRSSCKQFVTGGKKLLLFERSWMNRWKSAVLHEGEGNIRSVKWR 180
ETFDCPIKIIAVHPHFVRSSCKQFVTGGKKLLLFERSWMNRWKSAVLHEGEGNIRSVKWR
Sbjct: 121 ETFDCPIKIIAVHPHFVRSSCKQFVTGGKKLLLFERSWMNRWKSAVLHEGEGNIRSVKWR 180
Query: 181 GHLIAWANNMGVKIFDIISKQRITNVPRDDISLRPDMYPCSLCWKDNVTLIIGWGTSVKV 240
GHLIAWANNMGVKIFDIISKQRITNVPRDDISLRPDMYPCSLCWKDNVTLIIGWGTSVKV
Sbjct: 181 GHLIAWANNMGVKIFDIISKQRITNVPRDDISLRPDMYPCSLCWKDNVTLIIGWGTSVKV 240
Query: 241 CSVKERHASEMRDLPSRYVEIVSQFETEFYISGLAPLCDQLVVLSYVKEISEKTEREYCA 300
CSVKERHASEMRDLPSRYVEIVSQFETEFYISGLAPLCDQLVVLSYVKEISEKTEREYCA
Sbjct: 241 CSVKERHASEMRDLPSRYVEIVSQFETEFYISGLAPLCDQLVVLSYVKEISEKTEREYCA 300
Query: 301 RPRLDIIQPLSETCEEISSDALTVRGFQENECRDYHLEYSEGESLFYIVSPRDVVVAKER 360
RPRLDIIQPLSETCEEISSDALTVRGFQENECRDYHLEYSEGESLFYIVSPRDVVVAKER
Sbjct: 301 RPRLDIIQPLSETCEEISSDALTVRGFQENECRDYHLEYSEGESLFYIVSPRDVVVAKER 360
Query: 361 DQDDHIDWLLEKKKYEEALMAAEISQKNIKRHKILDIGLAYINHLVERGDYDIAARKCQK 420
DQDDHIDWLLEKKKYEEALMAAEISQKNIKRHKILDIGLAYINHLVERGDYDIAARKCQK
Sbjct: 361 DQDDHIDWLLEKKKYEEALMAAEISQKNIKRHKILDIGLAYINHLVERGDYDIAARKCQK 420
Query: 421 ILGKNAALWEYEVYKFKEIGQLKAISPYLPRGDPVLKPLIYEMILHEFLESDYEGFATLI 480
ILGKNAALWEYEVYKFKEIGQLKAISPYLPRGDPVLKPLIYEMILHEFLESDYEGFATLI
Sbjct: 421 ILGKNAALWEYEVYKFKEIGQLKAISPYLPRGDPVLKPLIYEMILHEFLESDYEGFATLI 480
Query: 481 REWPGDLYNNSVIVQAVRDHLKKDSQNKTLLKTLAELYTYDKNYGNALEIYLTLRHKDVF 540
REWPGDLYNNSVIVQAVRDHLKKDSQNKTLLKTLAELYTYDKNYGNALEIYLTLRHKDVF
Sbjct: 481 REWPGDLYNNSVIVQAVRDHLKKDSQNKTLLKTLAELYTYDKNYGNALEIYLTLRHKDVF 540
Query: 541 QLIHKHNLFSSIKDKIVLLMDFDSEKAVDMLLDNEDKISIKKVVEELEDRPELQHVYLHK 600
QLIHKHNLFSSIKDKIVLLMDFDSEKAVDMLLDNEDKISIKKVVEELEDRPELQHVYLHK
Sbjct: 541 QLIHKHNLFSSIKDKIVLLMDFDSEKAVDMLLDNEDKISIKKVVEELEDRPELQHVYLHK 600
Query: 601 LFKRDHHKGQRYHEKQISLYAEYDRPNLLPFLRDSTHCPLEKALEICQQRNFVEETVYLL 660
LFKRDHHKGQRYHEKQISLYAEYDRPNLLPFLRDSTHCPLEKALEICQQRNFVEETVYLL
Sbjct: 601 LFKRDHHKGQRYHEKQISLYAEYDRPNLLPFLRDSTHCPLEKALEICQQRNFVEETVYLL 660
Query: 661 SRMGNSRSALKMIMEELHDVDKAIEFAKEQDDGELWEDLILYSIDKPPFITGLLNNIGTH 720
SRMGNSRSALKMIMEELHDVDKAIEFAKEQDDGELWEDLILYSIDKPPFITGLLNNIGTH
Sbjct: 661 SRMGNSRSALKMIMEELHDVDKAIEFAKEQDDGELWEDLILYSIDKPPFITGLLNNIGTH 720
Query: 721 VDPILLIHRIKEGMEIPNLRDSLVKILQDYNLQILLREGCKKILVADSLSLLKKMHRTQM 780
VDPILLIHRIKEGMEIPNLRDSLVKILQDYNLQILLREGCKKILVADSLSLLKKMHRTQM
Sbjct: 721 VDPILLIHRIKEGMEIPNLRDSLVKILQDYNLQILLREGCKKILVADSLSLLKKMHRTQM 780
Query: 781 KGVLVDEENICESCLSPILPSDAAKPFSVVVFHCRHMFHKECLPMPSMNSAAQFCNICSA 840
KGVLVDEENICESCLSPILPSDAAKPFSVVVFHCRHMFHKECLPMPSMNSAAQFCNICSA
Sbjct: 781 KGVLVDEENICESCLSPILPSDAAKPFSVVVFHCRHMFHKECLPMPSMNSAAQFCNICSA 840
Query: 841 KNRGPGSAILEMKK 854
KNRGPGSAILEMKK
Sbjct: 841 KNRGPGSAILEMKK 854
>gi|114199473 vacuolar protein sorting 41 isoform 2 [Homo sapiens]
Length = 829
Score = 1665 bits (4311), Expect = 0.0
Identities = 829/854 (97%), Positives = 829/854 (97%), Gaps = 25/854 (2%)
Query: 1 MAEAEEQETGSLEESTDESEEEESEEEPKLKYERLSNGVTEILQKDAASCMTVHDKFLAL 60
MAEAEEQETGSLEESTDESEEEESEEEPKLKYERLSNGVTEILQKDAASCMTVHDKFLAL
Sbjct: 1 MAEAEEQETGSLEESTDESEEEESEEEPKLKYERLSNGVTEILQKDAASCMTVHDKFLAL 60
Query: 61 GTHYGKVYLLDVQGNITQKFDVSPVKINQISLDESGEHMGVCSEDGKVQVFGLYSGEEFH 120
GTHYGKVYLLDVQGNITQKFDV VQVFGLYSGEEFH
Sbjct: 61 GTHYGKVYLLDVQGNITQKFDV-------------------------VQVFGLYSGEEFH 95
Query: 121 ETFDCPIKIIAVHPHFVRSSCKQFVTGGKKLLLFERSWMNRWKSAVLHEGEGNIRSVKWR 180
ETFDCPIKIIAVHPHFVRSSCKQFVTGGKKLLLFERSWMNRWKSAVLHEGEGNIRSVKWR
Sbjct: 96 ETFDCPIKIIAVHPHFVRSSCKQFVTGGKKLLLFERSWMNRWKSAVLHEGEGNIRSVKWR 155
Query: 181 GHLIAWANNMGVKIFDIISKQRITNVPRDDISLRPDMYPCSLCWKDNVTLIIGWGTSVKV 240
GHLIAWANNMGVKIFDIISKQRITNVPRDDISLRPDMYPCSLCWKDNVTLIIGWGTSVKV
Sbjct: 156 GHLIAWANNMGVKIFDIISKQRITNVPRDDISLRPDMYPCSLCWKDNVTLIIGWGTSVKV 215
Query: 241 CSVKERHASEMRDLPSRYVEIVSQFETEFYISGLAPLCDQLVVLSYVKEISEKTEREYCA 300
CSVKERHASEMRDLPSRYVEIVSQFETEFYISGLAPLCDQLVVLSYVKEISEKTEREYCA
Sbjct: 216 CSVKERHASEMRDLPSRYVEIVSQFETEFYISGLAPLCDQLVVLSYVKEISEKTEREYCA 275
Query: 301 RPRLDIIQPLSETCEEISSDALTVRGFQENECRDYHLEYSEGESLFYIVSPRDVVVAKER 360
RPRLDIIQPLSETCEEISSDALTVRGFQENECRDYHLEYSEGESLFYIVSPRDVVVAKER
Sbjct: 276 RPRLDIIQPLSETCEEISSDALTVRGFQENECRDYHLEYSEGESLFYIVSPRDVVVAKER 335
Query: 361 DQDDHIDWLLEKKKYEEALMAAEISQKNIKRHKILDIGLAYINHLVERGDYDIAARKCQK 420
DQDDHIDWLLEKKKYEEALMAAEISQKNIKRHKILDIGLAYINHLVERGDYDIAARKCQK
Sbjct: 336 DQDDHIDWLLEKKKYEEALMAAEISQKNIKRHKILDIGLAYINHLVERGDYDIAARKCQK 395
Query: 421 ILGKNAALWEYEVYKFKEIGQLKAISPYLPRGDPVLKPLIYEMILHEFLESDYEGFATLI 480
ILGKNAALWEYEVYKFKEIGQLKAISPYLPRGDPVLKPLIYEMILHEFLESDYEGFATLI
Sbjct: 396 ILGKNAALWEYEVYKFKEIGQLKAISPYLPRGDPVLKPLIYEMILHEFLESDYEGFATLI 455
Query: 481 REWPGDLYNNSVIVQAVRDHLKKDSQNKTLLKTLAELYTYDKNYGNALEIYLTLRHKDVF 540
REWPGDLYNNSVIVQAVRDHLKKDSQNKTLLKTLAELYTYDKNYGNALEIYLTLRHKDVF
Sbjct: 456 REWPGDLYNNSVIVQAVRDHLKKDSQNKTLLKTLAELYTYDKNYGNALEIYLTLRHKDVF 515
Query: 541 QLIHKHNLFSSIKDKIVLLMDFDSEKAVDMLLDNEDKISIKKVVEELEDRPELQHVYLHK 600
QLIHKHNLFSSIKDKIVLLMDFDSEKAVDMLLDNEDKISIKKVVEELEDRPELQHVYLHK
Sbjct: 516 QLIHKHNLFSSIKDKIVLLMDFDSEKAVDMLLDNEDKISIKKVVEELEDRPELQHVYLHK 575
Query: 601 LFKRDHHKGQRYHEKQISLYAEYDRPNLLPFLRDSTHCPLEKALEICQQRNFVEETVYLL 660
LFKRDHHKGQRYHEKQISLYAEYDRPNLLPFLRDSTHCPLEKALEICQQRNFVEETVYLL
Sbjct: 576 LFKRDHHKGQRYHEKQISLYAEYDRPNLLPFLRDSTHCPLEKALEICQQRNFVEETVYLL 635
Query: 661 SRMGNSRSALKMIMEELHDVDKAIEFAKEQDDGELWEDLILYSIDKPPFITGLLNNIGTH 720
SRMGNSRSALKMIMEELHDVDKAIEFAKEQDDGELWEDLILYSIDKPPFITGLLNNIGTH
Sbjct: 636 SRMGNSRSALKMIMEELHDVDKAIEFAKEQDDGELWEDLILYSIDKPPFITGLLNNIGTH 695
Query: 721 VDPILLIHRIKEGMEIPNLRDSLVKILQDYNLQILLREGCKKILVADSLSLLKKMHRTQM 780
VDPILLIHRIKEGMEIPNLRDSLVKILQDYNLQILLREGCKKILVADSLSLLKKMHRTQM
Sbjct: 696 VDPILLIHRIKEGMEIPNLRDSLVKILQDYNLQILLREGCKKILVADSLSLLKKMHRTQM 755
Query: 781 KGVLVDEENICESCLSPILPSDAAKPFSVVVFHCRHMFHKECLPMPSMNSAAQFCNICSA 840
KGVLVDEENICESCLSPILPSDAAKPFSVVVFHCRHMFHKECLPMPSMNSAAQFCNICSA
Sbjct: 756 KGVLVDEENICESCLSPILPSDAAKPFSVVVFHCRHMFHKECLPMPSMNSAAQFCNICSA 815
Query: 841 KNRGPGSAILEMKK 854
KNRGPGSAILEMKK
Sbjct: 816 KNRGPGSAILEMKK 829
>gi|17978477 vacuolar protein sorting 11 [Homo sapiens]
Length = 941
Score = 47.8 bits (112), Expect = 4e-05
Identities = 72/298 (24%), Positives = 126/298 (42%), Gaps = 38/298 (12%)
Query: 563 DSEKAVDMLLDN--EDKISIKKVVEELEDRPELQHVYLHKLFKRD--HHKGQRYHEKQIS 618
+SE+ + + +N E K ++ + E D P+ + L +L ++ H K + EK
Sbjct: 589 NSEEFIPIFANNPRELKAFLEHMSEVQPDSPQGIYDTLLELRLQNWAHEKDPQVKEK--- 645
Query: 619 LYAEYDRPNLLPFLRDSTHCPL-EKALEICQQRNFVEETVYLL--SRMGNSRSALKMIME 675
L+AE + L+ C + +KAL +CQ +F + +YL ++ M E
Sbjct: 646 LHAE-----AISLLKSGRFCDVFDKALVLCQMHDFQDGVLYLYEQGKLFQQIMHYHMQHE 700
Query: 676 ELHDVDKAIEFAKEQDDGELWEDLILY----SIDKPPFITGLLNNIGTH--VDPILLIHR 729
+ V E EQD LWE + Y D ++ +L +I + P+L++
Sbjct: 701 QYRQVISVCERHGEQDP-SLWEQALSYFARKEEDCKEYVAAVLKHIENKNLMPPLLVVQT 759
Query: 730 IKEG--MEIPNLRDSLVKILQDYNLQILLREGCKKILVADSLSLLKKMHRTQMKGVLVDE 787
+ + +RD LV+ LQ + QI E + ++ + +++ + + +
Sbjct: 760 LAHNSTATLSVIRDYLVQKLQKQSQQIAQDELRVRRYREETTRIRQEIQELKASPKIFQK 819
Query: 788 E--NICESCLSPILPSDAAKPFSVVVFHCRHMFHKECLPMPSMNSAAQFCNICSAKNR 843
+IC S L LPS V F C H FH+ C S + A C C +NR
Sbjct: 820 TKCSICNSALE--LPS--------VHFLCGHSFHQHCFESYSESDAD--CPTCLPENR 865
Score = 37.4 bits (85), Expect = 0.060
Identities = 25/110 (22%), Positives = 55/110 (50%), Gaps = 4/110 (3%)
Query: 340 SEGESLFYIVSPRDVVVAKERDQDDHIDWLLEKKKYEEALMAAEISQKNIKRHKILDIGL 399
+E SL+ + V +E+D ++ L +K +E A+ A+ +++ + I +
Sbjct: 335 AEWGSLYVLTRDGRVHALQEKDTQTKLEMLFKKNLFEMAINLAK--SQHLDSDGLAQIFM 392
Query: 400 AYINHLVERGDYDIAARKCQKILGKNAALWEYEVYKFKEIGQLKAISPYL 449
Y +HL +G++D A ++ + +GK Y + KF + ++ ++ YL
Sbjct: 393 QYGDHLYSKGNHDGAVQQYIRTIGKLEP--SYVIRKFLDAQRIHNLTAYL 440
>gi|17978485 vacuolar protein sorting 18 [Homo sapiens]
Length = 973
Score = 45.1 bits (105), Expect = 3e-04
Identities = 46/227 (20%), Positives = 98/227 (43%), Gaps = 21/227 (9%)
Query: 610 QRYHEKQISLYAEYDRPNLLPFLRDS------THCPLEKALEICQQRNFVEETVYLLSRM 663
Q H +SLYA +LL +L + H L+ AL +C + V++ +
Sbjct: 661 QAIHNYLLSLYARGRPDSLLAYLEQAGASPHRVHYDLKYALRLCAEHGHHRACVHVYKVL 720
Query: 664 GNSRSALKMIMEELHDVDKAIEFAKEQDDG---ELWEDLILYSIDKPPFITGLLNNIGTH 720
A+ + ++ D+ K E+D+ +LW + + + + + + + +
Sbjct: 721 ELYEEAVDLALQVDVDLAKQCADLPEEDEELRKKLWLKIARHVVQEEEDVQTAMACLASC 780
Query: 721 VDPILLIHRI----KEGMEIPNLRDSLVKILQDYNLQILLREGCKKILVADSLSLLKKMH 776
P+L I + + + I + ++++ L+ YN I + + A + + + +
Sbjct: 781 --PLLKIEDVLPFFPDFVTIDHFKEAICSSLKAYNHHIQELQREMEEATASAQRIRRDLQ 838
Query: 777 RTQMKGVLVDEENICESCLSPILPSDAAKPFSVVVFHCRHMFHKECL 823
+ + V+ ++ C +C P+L +PF +F C HMFH +CL
Sbjct: 839 ELRGRYGTVEPQDKCATCDFPLLN----RPF--YLFLCGHMFHADCL 879
>gi|4759128 solute carrier family 24 (sodium/potassium/calcium
exchanger), member 1 [Homo sapiens]
Length = 1099
Score = 37.7 bits (86), Expect = 0.046
Identities = 23/45 (51%), Positives = 24/45 (53%)
Query: 3 EAEEQETGSLEESTDESEEEESEEEPKLKYERLSNGVTEILQKDA 47
E EEQE EE +E EEEE EEE K E LS E QK A
Sbjct: 865 EEEEQEEEEEEEEQEEEEEEEEEEEEKGNEEPLSLDWPETRQKQA 909
Score = 30.8 bits (68), Expect = 5.6
Identities = 19/45 (42%), Positives = 24/45 (53%), Gaps = 3/45 (6%)
Query: 2 AEAEEQETGSLEESTDESEEEESEEEPKLKYERLSNGVTEILQKD 46
+E EE+E EE +E EEEE EEE + + E G E L D
Sbjct: 859 SEEEEEEE---EEQEEEEEEEEQEEEEEEEEEEEEKGNEEPLSLD 900
>gi|13376840 WD repeat domain 61 [Homo sapiens]
Length = 305
Score = 35.8 bits (81), Expect = 0.17
Identities = 23/82 (28%), Positives = 39/82 (47%), Gaps = 3/82 (3%)
Query: 56 KFLALGTHYGKVYLLDVQ-GNITQKFDVSPVKINQISLDESGEHMGVCSEDGKVQVFGLY 114
++LA GTH GKV + V+ G D I I+ G+++ + DG + +F +
Sbjct: 119 QYLATGTHVGKVNIFGVESGKKEYSLDTRGKFILSIAYSPDGKYLASGAIDGIINIFDIA 178
Query: 115 SGEEFH--ETFDCPIKIIAVHP 134
+G+ H E PI+ + P
Sbjct: 179 TGKLLHTLEGHAMPIRSLTFSP 200
>gi|242247001 clathrin, heavy polypeptide-like 1 isoform 2 [Homo
sapiens]
Length = 1583
Score = 35.4 bits (80), Expect = 0.23
Identities = 23/95 (24%), Positives = 46/95 (48%), Gaps = 2/95 (2%)
Query: 654 EETVYLLSRMGNSRSALKMIMEELHDVDKAIEFAKEQDDGELWEDLILYSIDKPPFITGL 713
EE + + + SA+++++E + ++D+A EFA+ ++ +W L + K +
Sbjct: 1066 EEAFTVFHKFDMNASAIQVLIEHIGNLDRAYEFAERCNEPAVWSQLAQAQLQK-DLVKEA 1124
Query: 714 LNNIGTHVDPILLIHRIKEGMEIPNLRDSLVKILQ 748
+N+ DP + ++ N D LVK LQ
Sbjct: 1125 INSYIRGDDPSSYLEVVQSASRSNNWED-LVKFLQ 1158
>gi|242246985 clathrin, heavy polypeptide-like 1 isoform 1 [Homo
sapiens]
Length = 1640
Score = 35.4 bits (80), Expect = 0.23
Identities = 23/95 (24%), Positives = 46/95 (48%), Gaps = 2/95 (2%)
Query: 654 EETVYLLSRMGNSRSALKMIMEELHDVDKAIEFAKEQDDGELWEDLILYSIDKPPFITGL 713
EE + + + SA+++++E + ++D+A EFA+ ++ +W L + K +
Sbjct: 1066 EEAFTVFHKFDMNASAIQVLIEHIGNLDRAYEFAERCNEPAVWSQLAQAQLQK-DLVKEA 1124
Query: 714 LNNIGTHVDPILLIHRIKEGMEIPNLRDSLVKILQ 748
+N+ DP + ++ N D LVK LQ
Sbjct: 1125 INSYIRGDDPSSYLEVVQSASRSNNWED-LVKFLQ 1158
>gi|239050813 lipoxygenase homology domains 1 isoform 1 [Homo
sapiens]
Length = 2211
Score = 35.0 bits (79), Expect = 0.30
Identities = 18/43 (41%), Positives = 26/43 (60%), Gaps = 4/43 (9%)
Query: 3 EAEEQETGSLEESTDESEEEESEEEPKLKYERLSNGVTEILQK 45
E EE+E+ S EES+ E EE E EEE E G+ E++++
Sbjct: 951 EGEEEESSSSEESSSEEEEMEEEEEE----EEFGPGMQEVIEQ 989
>gi|190194429 zinc finger protein 267 [Homo sapiens]
Length = 743
Score = 34.7 bits (78), Expect = 0.39
Identities = 24/111 (21%), Positives = 54/111 (48%), Gaps = 5/111 (4%)
Query: 522 KNYGNALEIYLTLRHKDVFQLIHKHNLFSSIKDK--IVLLMDFDSEKAVDMLLDNEDKIS 579
+NY N + + L + D+ + + ++K + + + D S D+L ++ + S
Sbjct: 35 ENYRNLVSLGLVVSKPDLITFLEQRKEPWNVKSEETVAIQPDVFSHYNKDLLTEHCTEAS 94
Query: 580 IKKVVEELEDRPELQHVYLHKLFKRDHHKGQR--YHEKQISLYAEYDRPNL 628
+KV+ +L++++L K +KR+ +G Y EK Y ++D ++
Sbjct: 95 FQKVISRRHGSCDLENLHLRKRWKREECEGHNGCYDEKTFK-YDQFDESSV 144
>gi|148763345 cell division cycle 2-like 2 isoform 4 [Homo sapiens]
Length = 770
Score = 34.3 bits (77), Expect = 0.50
Identities = 15/25 (60%), Positives = 18/25 (72%)
Query: 3 EAEEQETGSLEESTDESEEEESEEE 27
E EE+E GS E ++E EEEE EEE
Sbjct: 285 EEEEEEEGSTSEESEEEEEEEEEEE 309
Score = 32.7 bits (73), Expect = 1.5
Identities = 15/25 (60%), Positives = 18/25 (72%)
Query: 3 EAEEQETGSLEESTDESEEEESEEE 27
E EE+E + EES +E EEEE EEE
Sbjct: 286 EEEEEEGSTSEESEEEEEEEEEEEE 310
Score = 31.6 bits (70), Expect = 3.3
Identities = 18/33 (54%), Positives = 23/33 (69%), Gaps = 1/33 (3%)
Query: 3 EAEEQETGS-LEESTDESEEEESEEEPKLKYER 34
E EE+ETGS EE++++S EE SEEE ER
Sbjct: 306 EEEEEETGSNSEEASEQSAEEVSEEEMSEDEER 338
Score = 30.8 bits (68), Expect = 5.6
Identities = 17/35 (48%), Positives = 20/35 (57%)
Query: 3 EAEEQETGSLEESTDESEEEESEEEPKLKYERLSN 37
E EE+E E ST E EEE EEE + + E SN
Sbjct: 281 EEEEEEEEEEEGSTSEESEEEEEEEEEEEEETGSN 315
>gi|148763347 cell division cycle 2-like 2 isoform 1 [Homo sapiens]
Length = 780
Score = 34.3 bits (77), Expect = 0.50
Identities = 15/25 (60%), Positives = 18/25 (72%)
Query: 3 EAEEQETGSLEESTDESEEEESEEE 27
E EE+E GS E ++E EEEE EEE
Sbjct: 295 EEEEEEEGSTSEESEEEEEEEEEEE 319
Score = 32.7 bits (73), Expect = 1.5
Identities = 15/25 (60%), Positives = 18/25 (72%)
Query: 3 EAEEQETGSLEESTDESEEEESEEE 27
E EE+E + EES +E EEEE EEE
Sbjct: 296 EEEEEEGSTSEESEEEEEEEEEEEE 320
Score = 31.6 bits (70), Expect = 3.3
Identities = 18/33 (54%), Positives = 23/33 (69%), Gaps = 1/33 (3%)
Query: 3 EAEEQETGS-LEESTDESEEEESEEEPKLKYER 34
E EE+ETGS EE++++S EE SEEE ER
Sbjct: 316 EEEEEETGSNSEEASEQSAEEVSEEEMSEDEER 348
Score = 30.8 bits (68), Expect = 5.6
Identities = 17/35 (48%), Positives = 20/35 (57%)
Query: 3 EAEEQETGSLEESTDESEEEESEEEPKLKYERLSN 37
E EE+E E ST E EEE EEE + + E SN
Sbjct: 291 EEEEEEEEEEEGSTSEESEEEEEEEEEEEEETGSN 325
>gi|53832007 calcium channel, voltage-dependent, L type, alpha 1F
subunit [Homo sapiens]
Length = 1977
Score = 34.3 bits (77), Expect = 0.50
Identities = 17/41 (41%), Positives = 24/41 (58%)
Query: 5 EEQETGSLEESTDESEEEESEEEPKLKYERLSNGVTEILQK 45
+E+E G+ E D EEEE EEE + + E G E+LQ+
Sbjct: 795 KEEEEGARREGADMEEEEEEEEEEEEEEEEEGAGGVELLQE 835
>gi|16332372 cell division cycle 2-like 1 (PITSLRE proteins) isoform
9 [Homo sapiens]
Length = 771
Score = 34.3 bits (77), Expect = 0.50
Identities = 15/25 (60%), Positives = 18/25 (72%)
Query: 3 EAEEQETGSLEESTDESEEEESEEE 27
E EE+E GS E ++E EEEE EEE
Sbjct: 286 EEEEEEEGSTSEESEEEEEEEEEEE 310
Score = 32.7 bits (73), Expect = 1.5
Identities = 15/25 (60%), Positives = 18/25 (72%)
Query: 3 EAEEQETGSLEESTDESEEEESEEE 27
E EE+E + EES +E EEEE EEE
Sbjct: 287 EEEEEEGSTSEESEEEEEEEEEEEE 311
Score = 31.6 bits (70), Expect = 3.3
Identities = 18/33 (54%), Positives = 23/33 (69%), Gaps = 1/33 (3%)
Query: 3 EAEEQETGS-LEESTDESEEEESEEEPKLKYER 34
E EE+ETGS EE++++S EE SEEE ER
Sbjct: 307 EEEEEETGSNSEEASEQSAEEVSEEEMSEDEER 339
Score = 30.8 bits (68), Expect = 5.6
Identities = 17/35 (48%), Positives = 20/35 (57%)
Query: 3 EAEEQETGSLEESTDESEEEESEEEPKLKYERLSN 37
E EE+E E ST E EEE EEE + + E SN
Sbjct: 282 EEEEEEEEEEEGSTSEESEEEEEEEEEEEEETGSN 316
>gi|16332370 cell division cycle 2-like 1 (PITSLRE proteins) isoform
8 [Homo sapiens]
Length = 780
Score = 34.3 bits (77), Expect = 0.50
Identities = 15/25 (60%), Positives = 18/25 (72%)
Query: 3 EAEEQETGSLEESTDESEEEESEEE 27
E EE+E GS E ++E EEEE EEE
Sbjct: 295 EEEEEEEGSTSEESEEEEEEEEEEE 319
Score = 32.7 bits (73), Expect = 1.5
Identities = 15/25 (60%), Positives = 18/25 (72%)
Query: 3 EAEEQETGSLEESTDESEEEESEEE 27
E EE+E + EES +E EEEE EEE
Sbjct: 296 EEEEEEGSTSEESEEEEEEEEEEEE 320
Score = 31.6 bits (70), Expect = 3.3
Identities = 18/33 (54%), Positives = 23/33 (69%), Gaps = 1/33 (3%)
Query: 3 EAEEQETGS-LEESTDESEEEESEEEPKLKYER 34
E EE+ETGS EE++++S EE SEEE ER
Sbjct: 316 EEEEEETGSNSEEASEQSAEEVSEEEMSEDEER 348
Score = 30.8 bits (68), Expect = 5.6
Identities = 17/35 (48%), Positives = 20/35 (57%)
Query: 3 EAEEQETGSLEESTDESEEEESEEEPKLKYERLSN 37
E EE+E E ST E EEE EEE + + E SN
Sbjct: 291 EEEEEEEEEEEGSTSEESEEEEEEEEEEEEETGSN 325
>gi|16332364 cell division cycle 2-like 1 (PITSLRE proteins) isoform
5 [Homo sapiens]
Length = 748
Score = 34.3 bits (77), Expect = 0.50
Identities = 15/25 (60%), Positives = 18/25 (72%)
Query: 3 EAEEQETGSLEESTDESEEEESEEE 27
E EE+E GS E ++E EEEE EEE
Sbjct: 263 EEEEEEEGSTSEESEEEEEEEEEEE 287
Score = 32.7 bits (73), Expect = 1.5
Identities = 15/25 (60%), Positives = 18/25 (72%)
Query: 3 EAEEQETGSLEESTDESEEEESEEE 27
E EE+E + EES +E EEEE EEE
Sbjct: 264 EEEEEEGSTSEESEEEEEEEEEEEE 288
Score = 31.6 bits (70), Expect = 3.3
Identities = 18/33 (54%), Positives = 23/33 (69%), Gaps = 1/33 (3%)
Query: 3 EAEEQETGS-LEESTDESEEEESEEEPKLKYER 34
E EE+ETGS EE++++S EE SEEE ER
Sbjct: 284 EEEEEETGSNSEEASEQSAEEVSEEEMSEDEER 316
Score = 30.8 bits (68), Expect = 5.6
Identities = 17/35 (48%), Positives = 20/35 (57%)
Query: 3 EAEEQETGSLEESTDESEEEESEEEPKLKYERLSN 37
E EE+E E ST E EEE EEE + + E SN
Sbjct: 259 EEEEEEEEEEEGSTSEESEEEEEEEEEEEEETGSN 293
>gi|16332362 cell division cycle 2-like 1 (PITSLRE proteins) isoform
4 [Homo sapiens]
Length = 737
Score = 34.3 bits (77), Expect = 0.50
Identities = 15/25 (60%), Positives = 18/25 (72%)
Query: 3 EAEEQETGSLEESTDESEEEESEEE 27
E EE+E GS E ++E EEEE EEE
Sbjct: 252 EEEEEEEGSTSEESEEEEEEEEEEE 276
Score = 32.7 bits (73), Expect = 1.5
Identities = 15/25 (60%), Positives = 18/25 (72%)
Query: 3 EAEEQETGSLEESTDESEEEESEEE 27
E EE+E + EES +E EEEE EEE
Sbjct: 253 EEEEEEGSTSEESEEEEEEEEEEEE 277
Score = 31.6 bits (70), Expect = 3.3
Identities = 18/33 (54%), Positives = 23/33 (69%), Gaps = 1/33 (3%)
Query: 3 EAEEQETGS-LEESTDESEEEESEEEPKLKYER 34
E EE+ETGS EE++++S EE SEEE ER
Sbjct: 273 EEEEEETGSNSEEASEQSAEEVSEEEMSEDEER 305
Score = 30.8 bits (68), Expect = 5.6
Identities = 17/35 (48%), Positives = 20/35 (57%)
Query: 3 EAEEQETGSLEESTDESEEEESEEEPKLKYERLSN 37
E EE+E E ST E EEE EEE + + E SN
Sbjct: 248 EEEEEEEEEEEGSTSEESEEEEEEEEEEEEETGSN 282
>gi|16332360 cell division cycle 2-like 1 (PITSLRE proteins)
isoform 3 [Homo sapiens]
Length = 526
Score = 34.3 bits (77), Expect = 0.50
Identities = 15/25 (60%), Positives = 18/25 (72%)
Query: 3 EAEEQETGSLEESTDESEEEESEEE 27
E EE+E GS E ++E EEEE EEE
Sbjct: 41 EEEEEEEGSTSEESEEEEEEEEEEE 65
Score = 32.7 bits (73), Expect = 1.5
Identities = 15/25 (60%), Positives = 18/25 (72%)
Query: 3 EAEEQETGSLEESTDESEEEESEEE 27
E EE+E + EES +E EEEE EEE
Sbjct: 42 EEEEEEGSTSEESEEEEEEEEEEEE 66
Score = 31.6 bits (70), Expect = 3.3
Identities = 18/33 (54%), Positives = 23/33 (69%), Gaps = 1/33 (3%)
Query: 3 EAEEQETGS-LEESTDESEEEESEEEPKLKYER 34
E EE+ETGS EE++++S EE SEEE ER
Sbjct: 62 EEEEEETGSNSEEASEQSAEEVSEEEMSEDEER 94
Score = 30.8 bits (68), Expect = 5.6
Identities = 17/35 (48%), Positives = 20/35 (57%)
Query: 3 EAEEQETGSLEESTDESEEEESEEEPKLKYERLSN 37
E EE+E E ST E EEE EEE + + E SN
Sbjct: 37 EEEEEEEEEEEGSTSEESEEEEEEEEEEEEETGSN 71
>gi|16332358 cell division cycle 2-like 1 (PITSLRE proteins) isoform
2 [Homo sapiens]
Length = 782
Score = 34.3 bits (77), Expect = 0.50
Identities = 15/25 (60%), Positives = 18/25 (72%)
Query: 3 EAEEQETGSLEESTDESEEEESEEE 27
E EE+E GS E ++E EEEE EEE
Sbjct: 297 EEEEEEEGSTSEESEEEEEEEEEEE 321
Score = 32.7 bits (73), Expect = 1.5
Identities = 15/25 (60%), Positives = 18/25 (72%)
Query: 3 EAEEQETGSLEESTDESEEEESEEE 27
E EE+E + EES +E EEEE EEE
Sbjct: 298 EEEEEEGSTSEESEEEEEEEEEEEE 322
Score = 31.6 bits (70), Expect = 3.3
Identities = 18/33 (54%), Positives = 23/33 (69%), Gaps = 1/33 (3%)
Query: 3 EAEEQETGS-LEESTDESEEEESEEEPKLKYER 34
E EE+ETGS EE++++S EE SEEE ER
Sbjct: 318 EEEEEETGSNSEEASEQSAEEVSEEEMSEDEER 350
Score = 30.8 bits (68), Expect = 5.6
Identities = 17/35 (48%), Positives = 20/35 (57%)
Query: 3 EAEEQETGSLEESTDESEEEESEEEPKLKYERLSN 37
E EE+E E ST E EEE EEE + + E SN
Sbjct: 293 EEEEEEEEEEEGSTSEESEEEEEEEEEEEEETGSN 327
>gi|29337286 eukaryotic translation initiation factor 2C, 3 isoform
b [Homo sapiens]
Length = 626
Score = 33.9 bits (76), Expect = 0.66
Identities = 25/99 (25%), Positives = 48/99 (48%), Gaps = 9/99 (9%)
Query: 298 YCA-----RPRLDIIQPLSETCEEISSDALTVRGFQENECRDYHLEYSEG---ESLFY-I 348
YCA RPR +IIQ L+ E+ F+ Y SEG + L+Y +
Sbjct: 392 YCATVRVQRPRQEIIQDLASMVRELLIQFYKSTRFKPTRIIFYRDGVSEGQFRQVLYYEL 451
Query: 349 VSPRDVVVAKERDQDDHIDWLLEKKKYEEALMAAEISQK 387
++ R+ ++ E+D I +++ +K++ L A+ +++
Sbjct: 452 LAIREACISLEKDYQPGITYIVVQKRHHTRLFCADRTER 490
>gi|29294647 eukaryotic translation initiation factor 2C, 3 isoform
a [Homo sapiens]
Length = 860
Score = 33.9 bits (76), Expect = 0.66
Identities = 25/99 (25%), Positives = 48/99 (48%), Gaps = 9/99 (9%)
Query: 298 YCA-----RPRLDIIQPLSETCEEISSDALTVRGFQENECRDYHLEYSEG---ESLFY-I 348
YCA RPR +IIQ L+ E+ F+ Y SEG + L+Y +
Sbjct: 626 YCATVRVQRPRQEIIQDLASMVRELLIQFYKSTRFKPTRIIFYRDGVSEGQFRQVLYYEL 685
Query: 349 VSPRDVVVAKERDQDDHIDWLLEKKKYEEALMAAEISQK 387
++ R+ ++ E+D I +++ +K++ L A+ +++
Sbjct: 686 LAIREACISLEKDYQPGITYIVVQKRHHTRLFCADRTER 724
>gi|94400919 WD repeat domain 90 [Homo sapiens]
Length = 1748
Score = 33.9 bits (76), Expect = 0.66
Identities = 18/59 (30%), Positives = 29/59 (49%), Gaps = 1/59 (1%)
Query: 60 LGTHYGKVYLLD-VQGNITQKFDVSPVKINQISLDESGEHMGVCSEDGKVQVFGLYSGE 117
+GT G ++ + +G T+ K+N++ H CSEDG V+V+ L S E
Sbjct: 1410 VGTTAGTLWFVSWAEGTSTRLISGHRSKVNEVVFSPGESHCATCSEDGSVRVWALASME 1468
>gi|4758788 NADH dehydrogenase (ubiquinone) Fe-S protein 3 precursor
[Homo sapiens]
Length = 264
Score = 33.5 bits (75), Expect = 0.86
Identities = 25/103 (24%), Positives = 52/103 (50%), Gaps = 8/103 (7%)
Query: 612 YHEKQISLYAEYDRPNLLPFLRDSTHCPLEK-----ALEICQQRNFVEETVYLLSRMGNS 666
++E ++ ++ + P +L FLRD T+ + A+++ ++N E LLS NS
Sbjct: 81 FNELEVCIHPDGVIP-VLTFLRDHTNAQFKSLVDLTAVDVPTRQNRFEIVYNLLSLRFNS 139
Query: 667 RSALKMIMEELHDVDKAIEFAKEQD--DGELWEDLILYSIDKP 707
R +K +EL ++ A+ K + + E+W+ ++ + P
Sbjct: 140 RIRVKTYTDELTPIESAVSVFKAANWYEREIWDMFGVFFANHP 182
>gi|94681063 bromodomain adjacent to zinc finger domain, 2B [Homo
sapiens]
Length = 2168
Score = 33.5 bits (75), Expect = 0.86
Identities = 15/41 (36%), Positives = 26/41 (63%)
Query: 1 MAEAEEQETGSLEESTDESEEEESEEEPKLKYERLSNGVTE 41
+ E EE+E S+EES D+ + ESE + K + L +G+++
Sbjct: 268 LEEDEEEEDQSIEESEDDDSDSESEAQHKSNNQVLLHGISD 308
>gi|4758012 clathrin heavy chain 1 [Homo sapiens]
Length = 1675
Score = 33.1 bits (74), Expect = 1.1
Identities = 16/83 (19%), Positives = 38/83 (45%)
Query: 624 DRPNLLPFLRDSTHCPLEKALEICQQRNFVEETVYLLSRMGNSRSALKMIMEELHDVDKA 683
DR ++ ++ + I EE + + + SA+++++E + ++D+A
Sbjct: 1036 DRTRVMEYINRLDNYDAPDIANIAISNELFEEAFAIFRKFDVNTSAVQVLIEHIGNLDRA 1095
Query: 684 IEFAKEQDDGELWEDLILYSIDK 706
EFA+ ++ +W L + K
Sbjct: 1096 YEFAERCNEPAVWSQLAKAQLQK 1118
>gi|17975763 myelin transcription factor 1 [Homo sapiens]
Length = 1121
Score = 32.7 bits (73), Expect = 1.5
Identities = 18/46 (39%), Positives = 24/46 (52%)
Query: 3 EAEEQETGSLEESTDESEEEESEEEPKLKYERLSNGVTEILQKDAA 48
E EE+E EE +E EEEE EEE + + E I Q+D +
Sbjct: 273 EDEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEAAPDVIFQEDTS 318
Score = 31.6 bits (70), Expect = 3.3
Identities = 16/31 (51%), Positives = 19/31 (61%)
Query: 3 EAEEQETGSLEESTDESEEEESEEEPKLKYE 33
E EE+E EE DE EEEE EEE + + E
Sbjct: 260 EDEEEEEEEEEEEEDEEEEEEEEEEEEEEEE 290
Score = 31.2 bits (69), Expect = 4.3
Identities = 15/47 (31%), Positives = 25/47 (53%)
Query: 3 EAEEQETGSLEESTDESEEEESEEEPKLKYERLSNGVTEILQKDAAS 49
E +E+E EE +E EEEE EEE + + E +++ ++ S
Sbjct: 272 EEDEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEAAPDVIFQEDTS 318
Score = 30.8 bits (68), Expect = 5.6
Identities = 17/46 (36%), Positives = 25/46 (54%)
Query: 3 EAEEQETGSLEESTDESEEEESEEEPKLKYERLSNGVTEILQKDAA 48
E EE+E E+ +E EEEE EEE + + E E +++AA
Sbjct: 263 EEEEEEEEEEEDEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEAA 308
Score = 30.4 bits (67), Expect = 7.3
Identities = 15/31 (48%), Positives = 19/31 (61%)
Query: 3 EAEEQETGSLEESTDESEEEESEEEPKLKYE 33
E EE+E EE +E EEEE EEE + + E
Sbjct: 262 EEEEEEEEEEEEDEEEEEEEEEEEEEEEEEE 292
>gi|58761548 tau tubulin kinase 1 [Homo sapiens]
Length = 1321
Score = 32.3 bits (72), Expect = 1.9
Identities = 16/31 (51%), Positives = 19/31 (61%)
Query: 3 EAEEQETGSLEESTDESEEEESEEEPKLKYE 33
E EE+E EE DE EEEE EEE + + E
Sbjct: 734 EEEEEEEDEEEEEEDEEEEEEEEEEEEEEEE 764
Score = 30.8 bits (68), Expect = 5.6
Identities = 16/37 (43%), Positives = 21/37 (56%)
Query: 3 EAEEQETGSLEESTDESEEEESEEEPKLKYERLSNGV 39
E EE+E EE +E EEEE EEE + + E + V
Sbjct: 740 EDEEEEEEDEEEEEEEEEEEEEEEEEEEEEEEAAAAV 776
Score = 30.8 bits (68), Expect = 5.6
Identities = 16/41 (39%), Positives = 23/41 (56%)
Query: 3 EAEEQETGSLEESTDESEEEESEEEPKLKYERLSNGVTEIL 43
E EE+E EE +E EEEE EEE + + + + E+L
Sbjct: 742 EEEEEEDEEEEEEEEEEEEEEEEEEEEEEEAAAAVALGEVL 782
Score = 30.4 bits (67), Expect = 7.3
Identities = 15/31 (48%), Positives = 19/31 (61%)
Query: 3 EAEEQETGSLEESTDESEEEESEEEPKLKYE 33
E EE+E EE +E EEEE EEE + + E
Sbjct: 735 EEEEEEDEEEEEEDEEEEEEEEEEEEEEEEE 765
>gi|18375505 APEX nuclease 1 [Homo sapiens]
Length = 318
Score = 32.0 bits (71), Expect = 2.5
Identities = 19/64 (29%), Positives = 30/64 (46%)
Query: 560 MDFDSEKAVDMLLDNEDKISIKKVVEELEDRPELQHVYLHKLFKRDHHKGQRYHEKQISL 619
+D+ E+A D+L E K S K+ EL++ P L H Y ++ + G +Q L
Sbjct: 81 LDWVKEEAPDILCLQETKCSENKLPAELQELPGLSHQYWSAPSDKEGYSGVGLLSRQCPL 140
Query: 620 YAEY 623
Y
Sbjct: 141 KVSY 144
>gi|18375503 APEX nuclease 1 [Homo sapiens]
Length = 318
Score = 32.0 bits (71), Expect = 2.5
Identities = 19/64 (29%), Positives = 30/64 (46%)
Query: 560 MDFDSEKAVDMLLDNEDKISIKKVVEELEDRPELQHVYLHKLFKRDHHKGQRYHEKQISL 619
+D+ E+A D+L E K S K+ EL++ P L H Y ++ + G +Q L
Sbjct: 81 LDWVKEEAPDILCLQETKCSENKLPAELQELPGLSHQYWSAPSDKEGYSGVGLLSRQCPL 140
Query: 620 YAEY 623
Y
Sbjct: 141 KVSY 144
>gi|18375501 APEX nuclease 1 [Homo sapiens]
Length = 318
Score = 32.0 bits (71), Expect = 2.5
Identities = 19/64 (29%), Positives = 30/64 (46%)
Query: 560 MDFDSEKAVDMLLDNEDKISIKKVVEELEDRPELQHVYLHKLFKRDHHKGQRYHEKQISL 619
+D+ E+A D+L E K S K+ EL++ P L H Y ++ + G +Q L
Sbjct: 81 LDWVKEEAPDILCLQETKCSENKLPAELQELPGLSHQYWSAPSDKEGYSGVGLLSRQCPL 140
Query: 620 YAEY 623
Y
Sbjct: 141 KVSY 144
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.319 0.136 0.404
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 32,742,280
Number of Sequences: 37866
Number of extensions: 1509098
Number of successful extensions: 9885
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 43
Number of HSP's successfully gapped in prelim test: 42
Number of HSP's that attempted gapping in prelim test: 9084
Number of HSP's gapped (non-prelim): 632
length of query: 854
length of database: 18,247,518
effective HSP length: 111
effective length of query: 743
effective length of database: 14,044,392
effective search space: 10434983256
effective search space used: 10434983256
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 66 (30.0 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.