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Search of human proteins with 219842262
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|219842262 COP9 constitutive photomorphogenic homolog subunit
2 isoform 2 [Homo sapiens]
(450 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|219842262 COP9 constitutive photomorphogenic homolog subunit ... 904 0.0
gi|4759264 COP9 constitutive photomorphogenic homolog subunit 2 ... 881 0.0
gi|28872725 proteasome 26S non-ATPase subunit 11 [Homo sapiens] 114 1e-25
gi|47078240 G protein pathway suppressor 1 isoform 2 [Homo sapiens] 46 8e-05
gi|47078238 G protein pathway suppressor 1 isoform 1 [Homo sapiens] 46 8e-05
gi|4506221 proteasome 26S non-ATPase subunit 12 isoform 1 [Homo ... 41 0.003
gi|28872765 proteasome 26S non-ATPase subunit 12 isoform 2 [Homo... 41 0.003
gi|33350932 cytoplasmic dynein 1 heavy chain 1 [Homo sapiens] 38 0.016
gi|13124879 smooth muscle myosin heavy chain 11 isoform SM1A [Ho... 37 0.048
gi|92091586 smooth muscle myosin heavy chain 11 isoform SM1B [Ho... 37 0.048
gi|92091583 smooth muscle myosin heavy chain 11 isoform SM2B [Ho... 37 0.048
gi|13124875 smooth muscle myosin heavy chain 11 isoform SM2A [Ho... 37 0.048
gi|120432044 vav 3 guanine nucleotide exchange factor isoform 1 ... 36 0.062
gi|54607116 leiomodin 3 (fetal) [Homo sapiens] 35 0.18
gi|82880656 coiled-coil domain containing 46 isoform a [Homo sap... 34 0.24
gi|4503521 eukaryotic translation initiation factor 3, subunit 6... 34 0.31
gi|23397429 eukaryotic translation initiation factor 3, subunit ... 33 0.40
gi|150010558 myosin, heavy polypeptide 15 [Homo sapiens] 33 0.40
gi|12232385 COP9 constitutive photomorphogenic homolog subunit 7... 33 0.40
gi|7661914 proteasome (prosome, macropain) 26S subunit, non-ATPa... 33 0.40
gi|211059431 RANBP2-like and GRIP domain containing 4 [Homo sapi... 32 1.2
gi|190194412 thyroid hormone receptor interactor 11 [Homo sapiens] 32 1.2
gi|32698688 citron [Homo sapiens] 32 1.5
gi|27734905 aprataxin and PNKP like factor [Homo sapiens] 32 1.5
gi|189217904 RPGRIP1-like isoform b [Homo sapiens] 32 1.5
gi|118442834 RPGRIP1-like isoform a [Homo sapiens] 32 1.5
gi|242247001 clathrin, heavy polypeptide-like 1 isoform 2 [Homo ... 31 2.6
gi|242246985 clathrin, heavy polypeptide-like 1 isoform 1 [Homo ... 31 2.6
gi|55953112 ret finger protein 2 isoform 2 [Homo sapiens] 31 2.6
gi|47132524 ret finger protein 2 isoform 1 [Homo sapiens] 31 2.6
>gi|219842262 COP9 constitutive photomorphogenic homolog subunit 2
isoform 2 [Homo sapiens]
Length = 450
Score = 904 bits (2335), Expect = 0.0
Identities = 450/450 (100%), Positives = 450/450 (100%)
Query: 1 MSDMEDDFMCDDEEDYDLEYSEDSNSEPNVDLENQYYNSKALKEDDPKAALSSFQKVLEL 60
MSDMEDDFMCDDEEDYDLEYSEDSNSEPNVDLENQYYNSKALKEDDPKAALSSFQKVLEL
Sbjct: 1 MSDMEDDFMCDDEEDYDLEYSEDSNSEPNVDLENQYYNSKALKEDDPKAALSSFQKVLEL 60
Query: 61 EGEKGEWGFKALKQMIKINFKLTNFPEMMNRYKQLLTYIRSAVTRNYSEKSINSILDYIS 120
EGEKGEWGFKALKQMIKINFKLTNFPEMMNRYKQLLTYIRSAVTRNYSEKSINSILDYIS
Sbjct: 61 EGEKGEWGFKALKQMIKINFKLTNFPEMMNRYKQLLTYIRSAVTRNYSEKSINSILDYIS 120
Query: 121 TSKQNSDFLCQMDLLQEFYETTLEALKDAKNDRLWFKTNTKLGKLYLEREEYGKLQKILR 180
TSKQNSDFLCQMDLLQEFYETTLEALKDAKNDRLWFKTNTKLGKLYLEREEYGKLQKILR
Sbjct: 121 TSKQNSDFLCQMDLLQEFYETTLEALKDAKNDRLWFKTNTKLGKLYLEREEYGKLQKILR 180
Query: 181 QLHQSCQTDDGEDDLKKGTQLLEIYALEIQMYTAQKNNKKLKALYEQSLHIKSAIPHPLI 240
QLHQSCQTDDGEDDLKKGTQLLEIYALEIQMYTAQKNNKKLKALYEQSLHIKSAIPHPLI
Sbjct: 181 QLHQSCQTDDGEDDLKKGTQLLEIYALEIQMYTAQKNNKKLKALYEQSLHIKSAIPHPLI 240
Query: 241 MGVIRECGGKMHLREGEFEKAHTDFFEAFKNYDESGSPRRTTCLKYLVLANMLMKSGINP 300
MGVIRECGGKMHLREGEFEKAHTDFFEAFKNYDESGSPRRTTCLKYLVLANMLMKSGINP
Sbjct: 241 MGVIRECGGKMHLREGEFEKAHTDFFEAFKNYDESGSPRRTTCLKYLVLANMLMKSGINP 300
Query: 301 FDSQEAKPYKNDPEILAMTNLVSAYQNNDITEFEKILKTNHSNIMDDPFIREHIEELLRN 360
FDSQEAKPYKNDPEILAMTNLVSAYQNNDITEFEKILKTNHSNIMDDPFIREHIEELLRN
Sbjct: 301 FDSQEAKPYKNDPEILAMTNLVSAYQNNDITEFEKILKTNHSNIMDDPFIREHIEELLRN 360
Query: 361 IRTQVLIKLIKPYTRIHIPFISKELNIDVADVESLLVQCILDNTIHGRIDQVNQLLELDH 420
IRTQVLIKLIKPYTRIHIPFISKELNIDVADVESLLVQCILDNTIHGRIDQVNQLLELDH
Sbjct: 361 IRTQVLIKLIKPYTRIHIPFISKELNIDVADVESLLVQCILDNTIHGRIDQVNQLLELDH 420
Query: 421 QKRGGARYTALDKWTNQLNSLNQAVVSKLA 450
QKRGGARYTALDKWTNQLNSLNQAVVSKLA
Sbjct: 421 QKRGGARYTALDKWTNQLNSLNQAVVSKLA 450
>gi|4759264 COP9 constitutive photomorphogenic homolog subunit 2
isoform 1 [Homo sapiens]
Length = 443
Score = 881 bits (2277), Expect = 0.0
Identities = 443/450 (98%), Positives = 443/450 (98%), Gaps = 7/450 (1%)
Query: 1 MSDMEDDFMCDDEEDYDLEYSEDSNSEPNVDLENQYYNSKALKEDDPKAALSSFQKVLEL 60
MSDMEDDFMCDDEEDYDLEYSEDSNSEPNVDLENQYYNSKALKEDDPKAALSSFQKVLEL
Sbjct: 1 MSDMEDDFMCDDEEDYDLEYSEDSNSEPNVDLENQYYNSKALKEDDPKAALSSFQKVLEL 60
Query: 61 EGEKGEWGFKALKQMIKINFKLTNFPEMMNRYKQLLTYIRSAVTRNYSEKSINSILDYIS 120
EGEKGEWGFKALKQMIKINFKLTNFPEMMNRYKQLLTYIRSAVTRNYSEKSINSILDYIS
Sbjct: 61 EGEKGEWGFKALKQMIKINFKLTNFPEMMNRYKQLLTYIRSAVTRNYSEKSINSILDYIS 120
Query: 121 TSKQNSDFLCQMDLLQEFYETTLEALKDAKNDRLWFKTNTKLGKLYLEREEYGKLQKILR 180
TSKQ MDLLQEFYETTLEALKDAKNDRLWFKTNTKLGKLYLEREEYGKLQKILR
Sbjct: 121 TSKQ-------MDLLQEFYETTLEALKDAKNDRLWFKTNTKLGKLYLEREEYGKLQKILR 173
Query: 181 QLHQSCQTDDGEDDLKKGTQLLEIYALEIQMYTAQKNNKKLKALYEQSLHIKSAIPHPLI 240
QLHQSCQTDDGEDDLKKGTQLLEIYALEIQMYTAQKNNKKLKALYEQSLHIKSAIPHPLI
Sbjct: 174 QLHQSCQTDDGEDDLKKGTQLLEIYALEIQMYTAQKNNKKLKALYEQSLHIKSAIPHPLI 233
Query: 241 MGVIRECGGKMHLREGEFEKAHTDFFEAFKNYDESGSPRRTTCLKYLVLANMLMKSGINP 300
MGVIRECGGKMHLREGEFEKAHTDFFEAFKNYDESGSPRRTTCLKYLVLANMLMKSGINP
Sbjct: 234 MGVIRECGGKMHLREGEFEKAHTDFFEAFKNYDESGSPRRTTCLKYLVLANMLMKSGINP 293
Query: 301 FDSQEAKPYKNDPEILAMTNLVSAYQNNDITEFEKILKTNHSNIMDDPFIREHIEELLRN 360
FDSQEAKPYKNDPEILAMTNLVSAYQNNDITEFEKILKTNHSNIMDDPFIREHIEELLRN
Sbjct: 294 FDSQEAKPYKNDPEILAMTNLVSAYQNNDITEFEKILKTNHSNIMDDPFIREHIEELLRN 353
Query: 361 IRTQVLIKLIKPYTRIHIPFISKELNIDVADVESLLVQCILDNTIHGRIDQVNQLLELDH 420
IRTQVLIKLIKPYTRIHIPFISKELNIDVADVESLLVQCILDNTIHGRIDQVNQLLELDH
Sbjct: 354 IRTQVLIKLIKPYTRIHIPFISKELNIDVADVESLLVQCILDNTIHGRIDQVNQLLELDH 413
Query: 421 QKRGGARYTALDKWTNQLNSLNQAVVSKLA 450
QKRGGARYTALDKWTNQLNSLNQAVVSKLA
Sbjct: 414 QKRGGARYTALDKWTNQLNSLNQAVVSKLA 443
>gi|28872725 proteasome 26S non-ATPase subunit 11 [Homo sapiens]
Length = 422
Score = 114 bits (286), Expect = 1e-25
Identities = 102/387 (26%), Positives = 177/387 (45%), Gaps = 34/387 (8%)
Query: 49 AALSSFQKVLELEGEKGEWGFKALKQMIKINFKLTNFPEMMNRYKQLLTYIRSAVTRNYS 108
AA+ FQ+ L E L ++K + + N E + +Q + + S + +
Sbjct: 4 AAVVEFQRAQSLLSTDREASIDILHSIVKRDIQ-ENDEEAVQVKEQSILELGSLLAKTGQ 62
Query: 109 EKSINSILDYI-----STSKQNSDFLCQ--MDLLQEFYETT-------LEALKDAKNDRL 154
+ +L Y+ S SK + L + +DL + T LE ++ AK+++
Sbjct: 63 AAELGGLLKYVRPFLNSISKAKAARLVRSLLDLFLDMEAATGQEVELCLECIEWAKSEKR 122
Query: 155 WF---KTNTKLGKLYLEREEYGKLQKILRQLHQSCQTDDGEDDLKKGTQLLEIYALEIQM 211
F +L LY + + Y + + QL + + D + L+E+ LE +
Sbjct: 123 TFLRQALEARLVSLYFDTKRYQEALHLGSQLLRELKKMDDK------ALLVEVQLLESKT 176
Query: 212 YTAQKNNKKLKALYEQSLHIKSAIP-HPLIMGVIRECGGKMHL-REGEFEKAHTDFFEAF 269
Y A N K +A + +AI P + + G +H E +++ A++ F+EAF
Sbjct: 177 YHALSNLPKARAALTSARTTANAIYCPPKLQATLDMQSGIIHAAEEKDWKTAYSYFYEAF 236
Query: 270 KNYDESGSPRRTTCLKYLVLANMLMKSGINPFDSQEAKPYK-----NDPEILAMTNLVSA 324
+ YD SP+ T LKY++L +++ + P D Q K + A+ + A
Sbjct: 237 EGYDSIDSPKAITSLKYMLLCKIMLNT---PEDVQALVSGKLALRYAGRQTEALKCVAQA 293
Query: 325 YQNNDITEFEKILKTNHSNIMDDPFIREHIEELLRNIRTQVLIKLIKPYTRIHIPFISKE 384
+N + +FEK L + + DDP I H+ +L N+ Q LI++I+P++R+ I IS
Sbjct: 294 SKNRSLADFEKALTDYRAELRDDPIISTHLAKLYDNLLEQNLIRVIEPFSRVQIEHISSL 353
Query: 385 LNIDVADVESLLVQCILDNTIHGRIDQ 411
+ + ADVE L Q ILD HG +DQ
Sbjct: 354 IKLSKADVERKLSQMILDKKFHGILDQ 380
>gi|47078240 G protein pathway suppressor 1 isoform 2 [Homo sapiens]
Length = 491
Score = 45.8 bits (107), Expect = 8e-05
Identities = 24/82 (29%), Positives = 41/82 (50%)
Query: 335 KILKTNHSNIMDDPFIREHIEELLRNIRTQVLIKLIKPYTRIHIPFISKELNIDVADVES 394
K+L N++ D ++ H+ L IR + LI+ PY + ++ N VA +E
Sbjct: 343 KMLDEMKDNLLLDMYLAPHVRTLYTQIRNRALIQYFSPYVSADMHRMAAAFNTTVAALED 402
Query: 395 LLVQCILDNTIHGRIDQVNQLL 416
L Q IL+ I R+D +++L
Sbjct: 403 ELTQLILEGLISARVDSHSKIL 424
>gi|47078238 G protein pathway suppressor 1 isoform 1 [Homo sapiens]
Length = 527
Score = 45.8 bits (107), Expect = 8e-05
Identities = 24/82 (29%), Positives = 41/82 (50%)
Query: 335 KILKTNHSNIMDDPFIREHIEELLRNIRTQVLIKLIKPYTRIHIPFISKELNIDVADVES 394
K+L N++ D ++ H+ L IR + LI+ PY + ++ N VA +E
Sbjct: 379 KMLDEMKDNLLLDMYLAPHVRTLYTQIRNRALIQYFSPYVSADMHRMAAAFNTTVAALED 438
Query: 395 LLVQCILDNTIHGRIDQVNQLL 416
L Q IL+ I R+D +++L
Sbjct: 439 ELTQLILEGLISARVDSHSKIL 460
>gi|4506221 proteasome 26S non-ATPase subunit 12 isoform 1 [Homo
sapiens]
Length = 456
Score = 40.8 bits (94), Expect = 0.003
Identities = 56/319 (17%), Positives = 137/319 (42%), Gaps = 49/319 (15%)
Query: 163 GKLYLEREEYGKLQKILRQLHQSCQTDDGEDDLKKGTQLLEIYALEIQMYTAQKNNKKLK 222
GK+Y+E E +L K L + + D+K+ +L+ L+++ Y + + ++++
Sbjct: 134 GKIYVEIER-ARLTKTLATIKEQ------NGDVKEAASILQ--ELQVETYGSMEKKERVE 184
Query: 223 ALYEQSLHIKSAIPHPLIMGVIRECGGKMHLREGEFEKAHTDFFEAFKNYDESGSPRRTT 282
+ EQ + + A+ + +I + +E EK ++ D+ +
Sbjct: 185 FILEQ-MRLCLAVKDYIRTQIISKKINTKFFQEENTEKLKLKYYNLMIQLDQHEGSYLSI 243
Query: 283 CLKYLV-----------------LANMLMKSGINPFDSQEAKPY------KNDPEILAMT 319
C Y L ++++ + PFD++++ K EI
Sbjct: 244 CKHYRAIYDTPCIQAESEKWQQALKSVVLYVILAPFDNEQSDLVHRISGDKKLEEIPKYK 303
Query: 320 NLVSAYQNNDITEFEKILKTNHSNI----MDDPFI-----REHIEELLRNIRTQVL---I 367
+L+ + ++ + +++ + ++ P E E+ ++++ +V+ I
Sbjct: 304 DLLKLFTTMELMRWSTLVEDYGMELRKGSLESPATDVFGSTEEGEKRWKDLKNRVVEHNI 363
Query: 368 KLI-KPYTRIHIPFISKELNIDVADVESLLVQCILDNTIHGRIDQVNQLLELDHQKRGGA 426
+++ K YTRI + +++ L++ V + E+ L +++ TI ++D++ ++ K
Sbjct: 364 RIMAKYYTRITMKRMAQLLDLSVDESEAFLSNLVVNKTIFAKVDRLAGIINFQRPKDPN- 422
Query: 427 RYTALDKWTNQLNSLNQAV 445
L+ W+ +LNSL V
Sbjct: 423 --NLLNDWSQKLNSLMSLV 439
>gi|28872765 proteasome 26S non-ATPase subunit 12 isoform 2 [Homo
sapiens]
Length = 436
Score = 40.8 bits (94), Expect = 0.003
Identities = 56/319 (17%), Positives = 137/319 (42%), Gaps = 49/319 (15%)
Query: 163 GKLYLEREEYGKLQKILRQLHQSCQTDDGEDDLKKGTQLLEIYALEIQMYTAQKNNKKLK 222
GK+Y+E E +L K L + + D+K+ +L+ L+++ Y + + ++++
Sbjct: 114 GKIYVEIER-ARLTKTLATIKEQ------NGDVKEAASILQ--ELQVETYGSMEKKERVE 164
Query: 223 ALYEQSLHIKSAIPHPLIMGVIRECGGKMHLREGEFEKAHTDFFEAFKNYDESGSPRRTT 282
+ EQ + + A+ + +I + +E EK ++ D+ +
Sbjct: 165 FILEQ-MRLCLAVKDYIRTQIISKKINTKFFQEENTEKLKLKYYNLMIQLDQHEGSYLSI 223
Query: 283 CLKYLV-----------------LANMLMKSGINPFDSQEAKPY------KNDPEILAMT 319
C Y L ++++ + PFD++++ K EI
Sbjct: 224 CKHYRAIYDTPCIQAESEKWQQALKSVVLYVILAPFDNEQSDLVHRISGDKKLEEIPKYK 283
Query: 320 NLVSAYQNNDITEFEKILKTNHSNI----MDDPFI-----REHIEELLRNIRTQVL---I 367
+L+ + ++ + +++ + ++ P E E+ ++++ +V+ I
Sbjct: 284 DLLKLFTTMELMRWSTLVEDYGMELRKGSLESPATDVFGSTEEGEKRWKDLKNRVVEHNI 343
Query: 368 KLI-KPYTRIHIPFISKELNIDVADVESLLVQCILDNTIHGRIDQVNQLLELDHQKRGGA 426
+++ K YTRI + +++ L++ V + E+ L +++ TI ++D++ ++ K
Sbjct: 344 RIMAKYYTRITMKRMAQLLDLSVDESEAFLSNLVVNKTIFAKVDRLAGIINFQRPKDPN- 402
Query: 427 RYTALDKWTNQLNSLNQAV 445
L+ W+ +LNSL V
Sbjct: 403 --NLLNDWSQKLNSLMSLV 419
>gi|33350932 cytoplasmic dynein 1 heavy chain 1 [Homo sapiens]
Length = 4646
Score = 38.1 bits (87), Expect = 0.016
Identities = 35/137 (25%), Positives = 61/137 (44%), Gaps = 15/137 (10%)
Query: 142 TLEALKDAK--NDRLWFKTNTKLGKLYLEREEYGKLQKILRQLHQSCQTDDGEDDLKKGT 199
TL+ LK K + + F T+T L + +Y L K D +DL T
Sbjct: 300 TLDILKHGKRFHATVSFDTDTGLKQALETVNDYNPLMK-----------DFPLNDLLSAT 348
Query: 200 QLLEIYALEIQMYTAQKNNKKLKALYEQSLHIKSAIPHPLIMGVIRECGGK--MHLREGE 257
+L +I + ++T + + K +++L + AI L +++ G + MH+ E
Sbjct: 349 ELDKIRQALVAIFTHLRKIRNTKYPIQRALRLVEAISRDLSSQLLKVLGTRKLMHVAYEE 408
Query: 258 FEKAHTDFFEAFKNYDE 274
FEK FE F+ +D+
Sbjct: 409 FEKVMVACFEVFQTWDD 425
>gi|13124879 smooth muscle myosin heavy chain 11 isoform SM1A [Homo
sapiens]
Length = 1972
Score = 36.6 bits (83), Expect = 0.048
Identities = 53/238 (22%), Positives = 97/238 (40%), Gaps = 34/238 (14%)
Query: 17 DLEYSEDSNSEPNVDLENQYYNSKALKEDD---------PKAALSSFQKVLELEGEKGEW 67
DL+ ++ N E L+ Q + + ED+ K L K LEL+ +
Sbjct: 1579 DLQARDEQNEEKRRQLQRQLHEYETELEDERKQRALAAAAKKKLEGDLKDLELQADSAIK 1638
Query: 68 G-FKALKQMIKINFKLTNFPEMMNRYKQLLTYIRSAVTRNYSEKSINSILDYISTSKQNS 126
G +A+KQ+ K+ ++ +F + + I + N EK S+ +
Sbjct: 1639 GREEAIKQLRKLQAQMKDFQRELEDARASRDEIFATAKEN--EKKAKSL---------EA 1687
Query: 127 DFLCQMDLLQEFYETTLEALK--DAKNDRLWFKTNTKLGKLYLEREEYGKLQKILRQLHQ 184
D + LQE A K D + + L + + L ++E +L+ + QL +
Sbjct: 1688 DLM----QLQEDLAAAERARKQADLEKEELAEELASSLSGRNALQDEKRRLEARIAQLEE 1743
Query: 185 SCQTDDG-----EDDLKKGTQLLEIYALEI--QMYTAQKNNKKLKALYEQSLHIKSAI 235
+ + G D ++K TQ E + E+ + TAQKN + L Q+ ++S +
Sbjct: 1744 ELEEEQGNMEAMSDRVRKATQQAEQLSNELATERSTAQKNESARQQLERQNKELRSKL 1801
>gi|92091586 smooth muscle myosin heavy chain 11 isoform SM1B [Homo
sapiens]
Length = 1979
Score = 36.6 bits (83), Expect = 0.048
Identities = 53/238 (22%), Positives = 97/238 (40%), Gaps = 34/238 (14%)
Query: 17 DLEYSEDSNSEPNVDLENQYYNSKALKEDD---------PKAALSSFQKVLELEGEKGEW 67
DL+ ++ N E L+ Q + + ED+ K L K LEL+ +
Sbjct: 1586 DLQARDEQNEEKRRQLQRQLHEYETELEDERKQRALAAAAKKKLEGDLKDLELQADSAIK 1645
Query: 68 G-FKALKQMIKINFKLTNFPEMMNRYKQLLTYIRSAVTRNYSEKSINSILDYISTSKQNS 126
G +A+KQ+ K+ ++ +F + + I + N EK S+ +
Sbjct: 1646 GREEAIKQLRKLQAQMKDFQRELEDARASRDEIFATAKEN--EKKAKSL---------EA 1694
Query: 127 DFLCQMDLLQEFYETTLEALK--DAKNDRLWFKTNTKLGKLYLEREEYGKLQKILRQLHQ 184
D + LQE A K D + + L + + L ++E +L+ + QL +
Sbjct: 1695 DLM----QLQEDLAAAERARKQADLEKEELAEELASSLSGRNALQDEKRRLEARIAQLEE 1750
Query: 185 SCQTDDG-----EDDLKKGTQLLEIYALEI--QMYTAQKNNKKLKALYEQSLHIKSAI 235
+ + G D ++K TQ E + E+ + TAQKN + L Q+ ++S +
Sbjct: 1751 ELEEEQGNMEAMSDRVRKATQQAEQLSNELATERSTAQKNESARQQLERQNKELRSKL 1808
>gi|92091583 smooth muscle myosin heavy chain 11 isoform SM2B [Homo
sapiens]
Length = 1945
Score = 36.6 bits (83), Expect = 0.048
Identities = 53/238 (22%), Positives = 97/238 (40%), Gaps = 34/238 (14%)
Query: 17 DLEYSEDSNSEPNVDLENQYYNSKALKEDD---------PKAALSSFQKVLELEGEKGEW 67
DL+ ++ N E L+ Q + + ED+ K L K LEL+ +
Sbjct: 1586 DLQARDEQNEEKRRQLQRQLHEYETELEDERKQRALAAAAKKKLEGDLKDLELQADSAIK 1645
Query: 68 G-FKALKQMIKINFKLTNFPEMMNRYKQLLTYIRSAVTRNYSEKSINSILDYISTSKQNS 126
G +A+KQ+ K+ ++ +F + + I + N EK S+ +
Sbjct: 1646 GREEAIKQLRKLQAQMKDFQRELEDARASRDEIFATAKEN--EKKAKSL---------EA 1694
Query: 127 DFLCQMDLLQEFYETTLEALK--DAKNDRLWFKTNTKLGKLYLEREEYGKLQKILRQLHQ 184
D + LQE A K D + + L + + L ++E +L+ + QL +
Sbjct: 1695 DLM----QLQEDLAAAERARKQADLEKEELAEELASSLSGRNALQDEKRRLEARIAQLEE 1750
Query: 185 SCQTDDG-----EDDLKKGTQLLEIYALEI--QMYTAQKNNKKLKALYEQSLHIKSAI 235
+ + G D ++K TQ E + E+ + TAQKN + L Q+ ++S +
Sbjct: 1751 ELEEEQGNMEAMSDRVRKATQQAEQLSNELATERSTAQKNESARQQLERQNKELRSKL 1808
>gi|13124875 smooth muscle myosin heavy chain 11 isoform SM2A [Homo
sapiens]
Length = 1938
Score = 36.6 bits (83), Expect = 0.048
Identities = 53/238 (22%), Positives = 97/238 (40%), Gaps = 34/238 (14%)
Query: 17 DLEYSEDSNSEPNVDLENQYYNSKALKEDD---------PKAALSSFQKVLELEGEKGEW 67
DL+ ++ N E L+ Q + + ED+ K L K LEL+ +
Sbjct: 1579 DLQARDEQNEEKRRQLQRQLHEYETELEDERKQRALAAAAKKKLEGDLKDLELQADSAIK 1638
Query: 68 G-FKALKQMIKINFKLTNFPEMMNRYKQLLTYIRSAVTRNYSEKSINSILDYISTSKQNS 126
G +A+KQ+ K+ ++ +F + + I + N EK S+ +
Sbjct: 1639 GREEAIKQLRKLQAQMKDFQRELEDARASRDEIFATAKEN--EKKAKSL---------EA 1687
Query: 127 DFLCQMDLLQEFYETTLEALK--DAKNDRLWFKTNTKLGKLYLEREEYGKLQKILRQLHQ 184
D + LQE A K D + + L + + L ++E +L+ + QL +
Sbjct: 1688 DLM----QLQEDLAAAERARKQADLEKEELAEELASSLSGRNALQDEKRRLEARIAQLEE 1743
Query: 185 SCQTDDG-----EDDLKKGTQLLEIYALEI--QMYTAQKNNKKLKALYEQSLHIKSAI 235
+ + G D ++K TQ E + E+ + TAQKN + L Q+ ++S +
Sbjct: 1744 ELEEEQGNMEAMSDRVRKATQQAEQLSNELATERSTAQKNESARQQLERQNKELRSKL 1801
>gi|120432044 vav 3 guanine nucleotide exchange factor isoform 1
[Homo sapiens]
Length = 847
Score = 36.2 bits (82), Expect = 0.062
Identities = 38/158 (24%), Positives = 65/158 (41%), Gaps = 33/158 (20%)
Query: 1 MSDMEDDFMCDDEED-YDLEYSEDSNSEPNVDL--ENQYYNSKALKEDDPKAALSSFQKV 57
+ D+ D+ + +DEED YD Y ED E DL + + K + D L+ ++
Sbjct: 144 LPDLIDETLVEDEEDLYDCVYGEDEGGEVYEDLMKAEEAHQPKCPENDIRSCCLAEIKQT 203
Query: 58 LELEGEKGE----WGFKALKQMI---KINFKLTNFPEMMNRYKQLLTYIRSAVTR----- 105
E E E + LK+ + + + N PE++ ++ L+ I ++
Sbjct: 204 EEKYTETLESIEKYFMAPLKRFLTAAEFDSVFINIPELVKLHRNLMQEIHDSIVNKNDQN 263
Query: 106 ------NYSEK------------SINSILDYISTSKQN 125
NY E+ S S LDYIS +K++
Sbjct: 264 LYQVFINYKERLVIYGQYCSGVESAISSLDYISKTKED 301
>gi|54607116 leiomodin 3 (fetal) [Homo sapiens]
Length = 560
Score = 34.7 bits (78), Expect = 0.18
Identities = 33/132 (25%), Positives = 57/132 (43%), Gaps = 11/132 (8%)
Query: 5 EDDFMCDDEEDYDLEYSEDSNSEP---------NVDLENQYYNSKALKE--DDPKAALSS 53
E+D DDE + D E SE++N E N + Q KA KE D P+A S
Sbjct: 150 EEDDDDDDEGEDDGEESEETNREEEGKAKEQIRNCENNCQQVTDKAFKEQRDRPEAQEQS 209
Query: 54 FQKVLELEGEKGEWGFKALKQMIKINFKLTNFPEMMNRYKQLLTYIRSAVTRNYSEKSIN 113
+K+ +L+ +K LK + + T+ + R ++ ++ N
Sbjct: 210 EKKISKLDPKKLALDTSFLKVSTRPSGNQTDLDGSLRRVRKNDPDMKELNLNNIENIPKE 269
Query: 114 SILDYISTSKQN 125
+LD+++ K+N
Sbjct: 270 MLLDFVNAMKKN 281
>gi|82880656 coiled-coil domain containing 46 isoform a [Homo
sapiens]
Length = 955
Score = 34.3 bits (77), Expect = 0.24
Identities = 47/248 (18%), Positives = 111/248 (44%), Gaps = 32/248 (12%)
Query: 12 DEEDYDLEYSEDSNSEPNVDLENQYYNSKALKEDDPKAALSSFQKVLELEGEKGEWGFKA 71
+++ +DL+ D E +++ +ALKE + + L+ +V L+ ++ + +
Sbjct: 550 EKKAHDLQSELDKGKEDTQKKIHKF--EEALKEKEEQ--LTRVTEVQRLQAQQADAALEE 605
Query: 72 LKQMIKINFKLTNFPEMMNRYKQLLTYIRSAVTRNYSEKSINSILDYISTSKQNSDFLCQ 131
K+ +++N + + EM K+ + + + +TR+ S + KQ+ +FL Q
Sbjct: 606 FKRQVELNSEKV-YAEM----KEQMEKVEADLTRSKSLRE-----------KQSKEFLWQ 649
Query: 132 MDLLQEFYETTLEALK-DAKNDRLWFKTNTKLGKLYLEREEYGKLQKILRQLHQSCQTDD 190
++ +++ YE + LK + + ++ K L R+ +++ + +QL + +
Sbjct: 650 LEDIRQRYEQQIVELKLEHEQEKTHLLQQHNAEKDSLVRDHEREIENLEKQLRAANMEHE 709
Query: 191 GEDDLKKGTQLLEIYALEIQMYTAQKNNKKLKALYEQSLHIKSAIPHPLI-MGVIRECGG 249
+ K I +E Q++ L E+ +++ S L+ +G++RE
Sbjct: 710 NQIQEFKKRDAQVIADMEAQVH----------KLREELINVNSQRKQQLVELGLLREEEK 759
Query: 250 KMHLREGE 257
+ RE E
Sbjct: 760 QRATREHE 767
>gi|4503521 eukaryotic translation initiation factor 3, subunit 6
48kDa [Homo sapiens]
Length = 445
Score = 33.9 bits (76), Expect = 0.31
Identities = 28/108 (25%), Positives = 51/108 (47%), Gaps = 6/108 (5%)
Query: 304 QEAKPYKNDPEILAMTNLVSA-YQNNDITEFEKILKTNHSNIMDDPFIREHIEELLRNIR 362
QE+ YK DP +T V Y N D +K L+ S +++D F+ +E+ + N R
Sbjct: 283 QESYTYK-DP----ITEFVECLYVNFDFDGAQKKLRECESVLVNDFFLVACLEDFIENAR 337
Query: 363 TQVLIKLIKPYTRIHIPFISKELNIDVADVESLLVQCILDNTIHGRID 410
+ + + I I ++ +LN+ + E +V I + + +ID
Sbjct: 338 LFIFETFCRIHQCISINMLADKLNMTPEEAERWIVNLIRNARLDAKID 385
>gi|23397429 eukaryotic translation initiation factor 3, subunit M
[Homo sapiens]
Length = 374
Score = 33.5 bits (75), Expect = 0.40
Identities = 19/100 (19%), Positives = 44/100 (44%), Gaps = 7/100 (7%)
Query: 355 EELLRNIRTQVLIKLIKPYTRIHIPFISKELNIDVADVESLLVQCILDNTIHGRIDQVNQ 414
E+ + +R + + I + +EL I DVE+ ++ + ++ +IDQ +
Sbjct: 271 EQNMAKMRLLTFMGMAVENKEISFDTMQQELQIGADDVEAFVIDAVRTKMVYCKIDQTQR 330
Query: 415 LLELDH-------QKRGGARYTALDKWTNQLNSLNQAVVS 447
+ + H +++ Y L+ W LN + +++S
Sbjct: 331 KVVVSHSTHRTFGKQQWQQLYDTLNAWKQNLNKVKNSLLS 370
>gi|150010558 myosin, heavy polypeptide 15 [Homo sapiens]
Length = 1946
Score = 33.5 bits (75), Expect = 0.40
Identities = 60/235 (25%), Positives = 95/235 (40%), Gaps = 34/235 (14%)
Query: 12 DEEDYDLEYSEDSNSEPNVDLENQYYNSKALKEDDPKAALSSFQKVLELEGEKG-----E 66
+ E + LE + N E +EN + + L E+ K L Q ++E EKG +
Sbjct: 1061 ERELHKLEGNLKLNRE---SMENLESSQRHLAEELRKKELELSQMNSKVENEKGLVAQLQ 1117
Query: 67 WGFKALKQMIK-INFKLT---NFPEMMNRYKQLLTYIRSAVTRNYSEKSINSILDYISTS 122
K L+ IK + KL M R + LT + + E +S+ T
Sbjct: 1118 KTVKELQTQIKDLKEKLEAERTTRAKMERERADLTQDLADLNERLEEVGGSSLAQLEITK 1177
Query: 123 KQNSDFLCQMDLLQE---FYETTLEALKDAKNDRLWFKTNTKLGKLYLEREEYGKLQKIL 179
KQ + F ++E +ETT +LK D L E G+++ L
Sbjct: 1178 KQETKFQKLHRDMEEATLHFETTSASLKKRHADSL--------------AELEGQVEN-L 1222
Query: 180 RQLHQSCQTDDGEDDLKKGTQLLEIYALEIQMYTAQKNNKKLKALYEQSLHIKSA 234
+Q+ Q + D + L+ L + QM A+ N +KL LYE+ LH +A
Sbjct: 1223 QQVKQKLEKDKSDLQLEVDDLLTRVE----QMTRAKANAEKLCTLYEERLHEATA 1273
>gi|12232385 COP9 constitutive photomorphogenic homolog subunit 7B
[Homo sapiens]
Length = 264
Score = 33.5 bits (75), Expect = 0.40
Identities = 16/45 (35%), Positives = 32/45 (71%), Gaps = 3/45 (6%)
Query: 378 IPF--ISKELNI-DVADVESLLVQCILDNTIHGRIDQVNQLLELD 419
IP+ + K+L + ++ ++E L+++ + + I G++DQ NQLLE+D
Sbjct: 111 IPYSVLLKDLEMRNLRELEDLIIEAVYTDIIQGKLDQRNQLLEVD 155
>gi|7661914 proteasome (prosome, macropain) 26S subunit, non-ATPase,
6 [Homo sapiens]
Length = 389
Score = 33.5 bits (75), Expect = 0.40
Identities = 17/85 (20%), Positives = 40/85 (47%)
Query: 333 FEKILKTNHSNIMDDPFIREHIEELLRNIRTQVLIKLIKPYTRIHIPFISKELNIDVADV 392
F + L + D H +R +R +L++ Y + + ++++ + V +
Sbjct: 271 FFQSLAVVEQEMKKDWLFAPHYRYYVREMRIHAYSQLLESYRSLTLGYMAEAFGVGVEFI 330
Query: 393 ESLLVQCILDNTIHGRIDQVNQLLE 417
+ L + I +H +ID+VN+++E
Sbjct: 331 DQELSRFIAAGRLHCKIDKVNEIVE 355
>gi|211059431 RANBP2-like and GRIP domain containing 4 [Homo sapiens]
Length = 1758
Score = 32.0 bits (71), Expect = 1.2
Identities = 20/85 (23%), Positives = 39/85 (45%), Gaps = 2/85 (2%)
Query: 12 DEEDYDLEYSEDSNSEPNVDLENQYYNSKALKEDDPKAALSSFQKVLELEGEKGEWGFKA 71
D++ Y E S+D + EP V + + + E+ K S K+ + E +W +
Sbjct: 1024 DDDAYKTEDSDDIHFEPVVQMPEKV--ELVIGEEGEKVLYSQGVKLFRFDAEVRQWKERG 1081
Query: 72 LKQMIKINFKLTNFPEMMNRYKQLL 96
L + + ++ P M+ R +Q+L
Sbjct: 1082 LGNLKILKNEVNGKPRMLMRREQVL 1106
>gi|190194412 thyroid hormone receptor interactor 11 [Homo sapiens]
Length = 1979
Score = 32.0 bits (71), Expect = 1.2
Identities = 59/256 (23%), Positives = 107/256 (41%), Gaps = 29/256 (11%)
Query: 32 LENQYYNSKALKEDDPKAALSSFQKVLELEGEKGEWGFKALKQMIKINFKLTNFPEMMNR 91
LE + + + + ED ++ + Q + E + E E+ ++ +QM + +L F E
Sbjct: 908 LEEEIKHHQKIIEDQNQSKMQLLQSLQEQKKEMDEFRYQH-EQMNATHTQL--FLEKDEE 964
Query: 92 YKQLLTYIRSAVTRNYSEKSI-----NSILDYISTSKQNSDFLCQM-DLLQEFYETTLEA 145
K L I T+ + E+ + I N + + DL + E ++
Sbjct: 965 IKSLQKTIEQIKTQLHEERQDIQTDNSDIFQETKVQSLNIENGSEKHDLSKAETERLVKG 1024
Query: 146 LKDAKND-RLWFKTNTKLGKLY--LEREEYGKLQKILRQ-------LHQSCQTDDGEDDL 195
+K+ + + +L + N L K L ++E GKL +I++Q LH + D+
Sbjct: 1025 IKERELEIKLLNEKNISLTKQIDQLSKDEVGKLTQIIQQKDLEIQALHARISSTSHTQDV 1084
Query: 196 KKGTQLLEIYALEIQMYTAQKN-----NKKLKALYEQSLHIKSAIPHPLIMGVIRECGGK 250
Q L+ YA+E + A N N LK Y + + I +A LI +++ K
Sbjct: 1085 VYLQQQLQAYAMEREKVFAVLNEKTRENSHLKTEYHKMMDIVAAKEAALIK--LQDENKK 1142
Query: 251 MHLREGEFEKAHTDFF 266
+ R FE + D F
Sbjct: 1143 LSTR---FESSGQDMF 1155
>gi|32698688 citron [Homo sapiens]
Length = 2027
Score = 31.6 bits (70), Expect = 1.5
Identities = 47/219 (21%), Positives = 85/219 (38%), Gaps = 16/219 (7%)
Query: 17 DLEYSEDSNSEPNVDLENQ-YYNSKALKEDDPKAALSSFQKVLELEGEKGEWGFKALKQM 75
DLE + +E N +L NQ +Y SK L E A + ++++L E +++
Sbjct: 948 DLEEQLNQLTEDNAELNNQNFYLSKQLDE-----ASGANDEIVQLRSEVDH----LRREI 998
Query: 76 IKINFKLTNFPEMMNRYKQLLTYIRS------AVTRNYSEKSINSILDYISTSKQNSDFL 129
+ +LT+ + M K T + A+ EK + S F
Sbjct: 999 TEREMQLTSQKQTMEALKTTCTMLEEQVMDLEALNDELLEKERQWEAWRSVLGDEKSQFE 1058
Query: 130 CQMDLLQEFYETTLEALKDAKNDRLWFKTNTKLGKLYLEREEYGKLQKILRQLHQSCQTD 189
C++ LQ +T ++ A + +L + E Q + Q ++
Sbjct: 1059 CRVRELQRMLDTEKQSRARADQRITESRQVVELAVKEHKAEILALQQALKEQKLKAESLS 1118
Query: 190 DGEDDLKKGTQLLEIYALEIQMYTAQKNNKKLKALYEQS 228
D +DL+K +LE+ A +Q + K + L EQ+
Sbjct: 1119 DKLNDLEKKHAMLEMNARSLQQKLETERELKQRLLEEQA 1157
>gi|27734905 aprataxin and PNKP like factor [Homo sapiens]
Length = 511
Score = 31.6 bits (70), Expect = 1.5
Identities = 17/42 (40%), Positives = 25/42 (59%), Gaps = 1/42 (2%)
Query: 3 DMEDDFMCDDEEDYDLEYSEDSNSEPNVDLENQYYNSKALKE 44
D+ D F+ D+EEDY+ EDS+ EP + E + + LKE
Sbjct: 463 DLNDSFLDDEEEDYE-PTDEDSDWEPGKEDEEKEDVEELLKE 503
>gi|189217904 RPGRIP1-like isoform b [Homo sapiens]
Length = 1235
Score = 31.6 bits (70), Expect = 1.5
Identities = 28/123 (22%), Positives = 53/123 (43%), Gaps = 12/123 (9%)
Query: 328 NDITEFEKILKTNHSNIMDDPFIREHIEELLRNIRTQVLIKLIKPYTRIHIPFISKELNI 387
ND+ + ++LK N+ + D F H E+ KL + ++ I + L
Sbjct: 349 NDLEKERELLKENYDKLYDSAFSAAHEEQW----------KLKEQQLKVQIAQLETALKS 398
Query: 388 DVADVESLLVQCILDNTIHGRIDQVNQLLELDH--QKRGGARYTALDKWTNQLNSLNQAV 445
D+ D +L + + + ++ Q N+ L+L + QK+ K NQ N +N
Sbjct: 399 DLTDKTEILDRLKTERDQNEKLVQENRELQLQYLEQKQQLDELKKRIKLYNQENDINADE 458
Query: 446 VSK 448
+S+
Sbjct: 459 LSE 461
>gi|118442834 RPGRIP1-like isoform a [Homo sapiens]
Length = 1315
Score = 31.6 bits (70), Expect = 1.5
Identities = 28/123 (22%), Positives = 53/123 (43%), Gaps = 12/123 (9%)
Query: 328 NDITEFEKILKTNHSNIMDDPFIREHIEELLRNIRTQVLIKLIKPYTRIHIPFISKELNI 387
ND+ + ++LK N+ + D F H E+ KL + ++ I + L
Sbjct: 349 NDLEKERELLKENYDKLYDSAFSAAHEEQW----------KLKEQQLKVQIAQLETALKS 398
Query: 388 DVADVESLLVQCILDNTIHGRIDQVNQLLELDH--QKRGGARYTALDKWTNQLNSLNQAV 445
D+ D +L + + + ++ Q N+ L+L + QK+ K NQ N +N
Sbjct: 399 DLTDKTEILDRLKTERDQNEKLVQENRELQLQYLEQKQQLDELKKRIKLYNQENDINADE 458
Query: 446 VSK 448
+S+
Sbjct: 459 LSE 461
>gi|242247001 clathrin, heavy polypeptide-like 1 isoform 2 [Homo
sapiens]
Length = 1583
Score = 30.8 bits (68), Expect = 2.6
Identities = 24/98 (24%), Positives = 46/98 (46%), Gaps = 9/98 (9%)
Query: 304 QEAKPYKNDPEILAMTNLVSAYQNNDITEFEKILKTNHSNIMDDPFIREHIEELLRNIRT 363
Q A DPE +++T V A+ D+ ++++ ++D+ EH RN++
Sbjct: 976 QTALSETRDPEEISVT--VKAFMTADLPN--ELIELLEKIVLDNSVFSEH-----RNLQN 1026
Query: 364 QVLIKLIKPYTRIHIPFISKELNIDVADVESLLVQCIL 401
+++ IK + +IS+ N D D+ S+ V L
Sbjct: 1027 LLILTAIKADRTRVMEYISRLDNYDALDIASIAVSSAL 1064
>gi|242246985 clathrin, heavy polypeptide-like 1 isoform 1 [Homo
sapiens]
Length = 1640
Score = 30.8 bits (68), Expect = 2.6
Identities = 24/98 (24%), Positives = 46/98 (46%), Gaps = 9/98 (9%)
Query: 304 QEAKPYKNDPEILAMTNLVSAYQNNDITEFEKILKTNHSNIMDDPFIREHIEELLRNIRT 363
Q A DPE +++T V A+ D+ ++++ ++D+ EH RN++
Sbjct: 976 QTALSETRDPEEISVT--VKAFMTADLPN--ELIELLEKIVLDNSVFSEH-----RNLQN 1026
Query: 364 QVLIKLIKPYTRIHIPFISKELNIDVADVESLLVQCIL 401
+++ IK + +IS+ N D D+ S+ V L
Sbjct: 1027 LLILTAIKADRTRVMEYISRLDNYDALDIASIAVSSAL 1064
>gi|55953112 ret finger protein 2 isoform 2 [Homo sapiens]
Length = 410
Score = 30.8 bits (68), Expect = 2.6
Identities = 34/129 (26%), Positives = 54/129 (41%), Gaps = 11/129 (8%)
Query: 114 SILDYISTSKQNSDFLC--QMDLLQEFYETTLEALKDAKNDRLWFKTNTKLGKLYLEREE 171
S LD + TSK+ S L D ++EF+E L KN+ L KL + E
Sbjct: 162 SRLDTLETSKRKSLQLLTKDSDKVKEFFEKLQHTLDQKKNEILSDFETMKLAVMQAYDPE 221
Query: 172 YGKLQKILRQLHQSCQTDDGEDDLKKGTQLLEIYALEIQMYTAQKNNKKLKALYEQSLHI 231
KL IL++ + + D+ + L+ QM Q+ +K+K + E L
Sbjct: 222 INKLNTILQEQRMAFNIAEAFKDVSEPIVFLQ------QM---QEFREKIKVIKETPLPP 272
Query: 232 KSAIPHPLI 240
+ PL+
Sbjct: 273 SNLPASPLM 281
>gi|47132524 ret finger protein 2 isoform 1 [Homo sapiens]
Length = 407
Score = 30.8 bits (68), Expect = 2.6
Identities = 34/129 (26%), Positives = 54/129 (41%), Gaps = 11/129 (8%)
Query: 114 SILDYISTSKQNSDFLC--QMDLLQEFYETTLEALKDAKNDRLWFKTNTKLGKLYLEREE 171
S LD + TSK+ S L D ++EF+E L KN+ L KL + E
Sbjct: 159 SRLDTLETSKRKSLQLLTKDSDKVKEFFEKLQHTLDQKKNEILSDFETMKLAVMQAYDPE 218
Query: 172 YGKLQKILRQLHQSCQTDDGEDDLKKGTQLLEIYALEIQMYTAQKNNKKLKALYEQSLHI 231
KL IL++ + + D+ + L+ QM Q+ +K+K + E L
Sbjct: 219 INKLNTILQEQRMAFNIAEAFKDVSEPIVFLQ------QM---QEFREKIKVIKETPLPP 269
Query: 232 KSAIPHPLI 240
+ PL+
Sbjct: 270 SNLPASPLM 278
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.316 0.133 0.377
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 15,625,109
Number of Sequences: 37866
Number of extensions: 663428
Number of successful extensions: 2516
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 16
Number of HSP's successfully gapped in prelim test: 54
Number of HSP's that attempted gapping in prelim test: 2471
Number of HSP's gapped (non-prelim): 94
length of query: 450
length of database: 18,247,518
effective HSP length: 106
effective length of query: 344
effective length of database: 14,233,722
effective search space: 4896400368
effective search space used: 4896400368
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 63 (28.9 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.