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Search of human proteins with 21915167
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|21915167 glutamate receptor, ionotropic, N-methyl
D-aspartate-like 1A isoform 1 [Homo sapiens]
(368 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|21915167 glutamate receptor, ionotropic, N-methyl D-aspartate... 729 0.0
gi|70166832 glutamate receptor, ionotropic, N-methyl D-aspartate... 347 1e-95
gi|70166414 GRINL1A combined protein isoform 1 [Homo sapiens] 233 3e-61
gi|21450705 leucine rich repeat containing 45 [Homo sapiens] 39 0.006
gi|237681119 breast cancer 1, early onset isoform 2 [Homo sapiens] 39 0.007
gi|237681121 breast cancer 1, early onset isoform 3 [Homo sapiens] 39 0.007
gi|6552299 breast cancer 1, early onset isoform 1 [Homo sapiens] 39 0.007
gi|38045898 RAB6-interacting protein 2 isoform epsilon [Homo sap... 38 0.013
gi|38045896 RAB6-interacting protein 2 isoform delta [Homo sapiens] 38 0.013
gi|148596949 nucleolar and coiled-body phosphoprotein 1 [Homo sa... 38 0.013
gi|114155142 nuclear pore complex-associated protein TPR [Homo s... 37 0.037
gi|146229340 mutated in colorectal cancers isoform 1 [Homo sapiens] 35 0.11
gi|14195601 protein phosphatase 1, regulatory (inhibitor) subuni... 35 0.11
gi|4505319 protein phosphatase 1, regulatory (inhibitor) subunit... 35 0.11
gi|4505129 mutated in colorectal cancers isoform 2 [Homo sapiens] 35 0.11
gi|224028289 tetratricopeptide repeat domain 28 [Homo sapiens] 34 0.24
gi|209954788 activating transcription factor 6 beta isoform b [H... 34 0.24
gi|20631977 activating transcription factor 6 beta isoform a [Ho... 34 0.24
gi|109134347 NY-REN-58 antigen [Homo sapiens] 34 0.24
gi|109134355 NY-REN-58 antigen [Homo sapiens] 34 0.24
gi|189181720 proteoglycan 4 isoform B [Homo sapiens] 33 0.31
gi|67190163 proteoglycan 4 isoform A [Homo sapiens] 33 0.31
gi|54607116 leiomodin 3 (fetal) [Homo sapiens] 33 0.31
gi|223029388 CD209 molecule isoform 4 [Homo sapiens] 33 0.41
gi|223029386 CD209 molecule isoform 3 [Homo sapiens] 33 0.41
gi|223029382 CD209 molecule isoform 6 [Homo sapiens] 33 0.41
gi|10863957 CD209 molecule isoform 1 [Homo sapiens] 33 0.41
gi|52426735 ankyrin 2 isoform 1 [Homo sapiens] 33 0.41
gi|39753957 lamina-associated polypeptide 1B [Homo sapiens] 33 0.41
gi|7656940 chromosome 1 open reading frame 9 protein isoform 1 [... 33 0.41
>gi|21915167 glutamate receptor, ionotropic, N-methyl
D-aspartate-like 1A isoform 1 [Homo sapiens]
Length = 368
Score = 729 bits (1882), Expect = 0.0
Identities = 368/368 (100%), Positives = 368/368 (100%)
Query: 1 MCSLPRGFEPQAPEDLAQRSLVELREMLKRQERLLRNEKFICKLPDKGKKIFDSFAKLKA 60
MCSLPRGFEPQAPEDLAQRSLVELREMLKRQERLLRNEKFICKLPDKGKKIFDSFAKLKA
Sbjct: 1 MCSLPRGFEPQAPEDLAQRSLVELREMLKRQERLLRNEKFICKLPDKGKKIFDSFAKLKA 60
Query: 61 AIAECEEVRRKSELFNPVSLDCKLRQKAIAEVDVGTDKAQNSDPILDTSSLVPGCSSVDN 120
AIAECEEVRRKSELFNPVSLDCKLRQKAIAEVDVGTDKAQNSDPILDTSSLVPGCSSVDN
Sbjct: 61 AIAECEEVRRKSELFNPVSLDCKLRQKAIAEVDVGTDKAQNSDPILDTSSLVPGCSSVDN 120
Query: 121 IKSSQTSQNQGLGRPTLEGDEETSEVEYTVNKGPASSNRDRVPPSSEASEHHPRHRVSSQ 180
IKSSQTSQNQGLGRPTLEGDEETSEVEYTVNKGPASSNRDRVPPSSEASEHHPRHRVSSQ
Sbjct: 121 IKSSQTSQNQGLGRPTLEGDEETSEVEYTVNKGPASSNRDRVPPSSEASEHHPRHRVSSQ 180
Query: 181 AEDTSSSFDNLFIDRLQRITIADQGEQQSEENASTKNLTGLSSGTEKKPHYMEVLEMRAK 240
AEDTSSSFDNLFIDRLQRITIADQGEQQSEENASTKNLTGLSSGTEKKPHYMEVLEMRAK
Sbjct: 181 AEDTSSSFDNLFIDRLQRITIADQGEQQSEENASTKNLTGLSSGTEKKPHYMEVLEMRAK 240
Query: 241 NPVPQLRKFKTNVLPFRQNDSSSHCQKSGSPISSEERRRRDKQHLDDITAARLLPLHHMP 300
NPVPQLRKFKTNVLPFRQNDSSSHCQKSGSPISSEERRRRDKQHLDDITAARLLPLHHMP
Sbjct: 241 NPVPQLRKFKTNVLPFRQNDSSSHCQKSGSPISSEERRRRDKQHLDDITAARLLPLHHMP 300
Query: 301 TQLLSIEESLALQKQQKQNYEEMQAKLAAQKLAERLNIKMRSYNPEGESSGRYREVRDED 360
TQLLSIEESLALQKQQKQNYEEMQAKLAAQKLAERLNIKMRSYNPEGESSGRYREVRDED
Sbjct: 301 TQLLSIEESLALQKQQKQNYEEMQAKLAAQKLAERLNIKMRSYNPEGESSGRYREVRDED 360
Query: 361 DDWSSDEF 368
DDWSSDEF
Sbjct: 361 DDWSSDEF 368
>gi|70166832 glutamate receptor, ionotropic, N-methyl
D-aspartate-like 1A isoform 2 [Homo sapiens]
Length = 211
Score = 347 bits (890), Expect = 1e-95
Identities = 174/180 (96%), Positives = 176/180 (97%)
Query: 189 DNLFIDRLQRITIADQGEQQSEENASTKNLTGLSSGTEKKPHYMEVLEMRAKNPVPQLRK 248
+ L + LQRITIADQGEQQSEENASTKNLTGLSSGTEKKPHYMEVLEMRAKNPVPQLRK
Sbjct: 32 ERLLRNELQRITIADQGEQQSEENASTKNLTGLSSGTEKKPHYMEVLEMRAKNPVPQLRK 91
Query: 249 FKTNVLPFRQNDSSSHCQKSGSPISSEERRRRDKQHLDDITAARLLPLHHMPTQLLSIEE 308
FKTNVLPFRQNDSSSHCQKSGSPISSEERRRRDKQHLDDITAARLLPLHHMPTQLLSIEE
Sbjct: 92 FKTNVLPFRQNDSSSHCQKSGSPISSEERRRRDKQHLDDITAARLLPLHHMPTQLLSIEE 151
Query: 309 SLALQKQQKQNYEEMQAKLAAQKLAERLNIKMRSYNPEGESSGRYREVRDEDDDWSSDEF 368
SLALQKQQKQNYEEMQAKLAAQKLAERLNIKMRSYNPEGESSGRYREVRDEDDDWSSDEF
Sbjct: 152 SLALQKQQKQNYEEMQAKLAAQKLAERLNIKMRSYNPEGESSGRYREVRDEDDDWSSDEF 211
Score = 81.6 bits (200), Expect = 1e-15
Identities = 42/59 (71%), Positives = 47/59 (79%)
Query: 1 MCSLPRGFEPQAPEDLAQRSLVELREMLKRQERLLRNEKFICKLPDKGKKIFDSFAKLK 59
MCSLPRGFEPQAPEDLAQRSLVELREMLKRQERLLRNE + D+G++ + A K
Sbjct: 1 MCSLPRGFEPQAPEDLAQRSLVELREMLKRQERLLRNELQRITIADQGEQQSEENASTK 59
>gi|70166414 GRINL1A combined protein isoform 1 [Homo sapiens]
Length = 550
Score = 233 bits (593), Expect = 3e-61
Identities = 115/115 (100%), Positives = 115/115 (100%)
Query: 254 LPFRQNDSSSHCQKSGSPISSEERRRRDKQHLDDITAARLLPLHHMPTQLLSIEESLALQ 313
LPFRQNDSSSHCQKSGSPISSEERRRRDKQHLDDITAARLLPLHHMPTQLLSIEESLALQ
Sbjct: 436 LPFRQNDSSSHCQKSGSPISSEERRRRDKQHLDDITAARLLPLHHMPTQLLSIEESLALQ 495
Query: 314 KQQKQNYEEMQAKLAAQKLAERLNIKMRSYNPEGESSGRYREVRDEDDDWSSDEF 368
KQQKQNYEEMQAKLAAQKLAERLNIKMRSYNPEGESSGRYREVRDEDDDWSSDEF
Sbjct: 496 KQQKQNYEEMQAKLAAQKLAERLNIKMRSYNPEGESSGRYREVRDEDDDWSSDEF 550
>gi|21450705 leucine rich repeat containing 45 [Homo sapiens]
Length = 670
Score = 39.3 bits (90), Expect = 0.006
Identities = 39/139 (28%), Positives = 65/139 (46%), Gaps = 14/139 (10%)
Query: 206 EQQSEENASTKNLTGLSSGTEKKPHYM-EVLEMRAKNPVPQLRKFKTNVLPFRQNDSSSH 264
EQQ +K L LS+ EK +V E+ K Q + F+T RQ +S
Sbjct: 347 EQQEAAERESKLLRDLSAANEKNLLLQNQVDELERKFRCQQEQLFQT-----RQEMTSMS 401
Query: 265 CQKSGSPISSEER----RRRDKQHLDDITAARLLPLHHMPTQLLSIEESLALQKQQ---- 316
+ I +EER +RR +Q L+D + R+ + HM L E+++ + Q+
Sbjct: 402 AELKMRAIQAEERLDMEKRRCRQSLEDSESLRIKEVEHMTRHLEESEKAMQERVQRLEAA 461
Query: 317 KQNYEEMQAKLAAQKLAER 335
+ + EE +++ A L+ER
Sbjct: 462 RLSLEEELSRVKAAALSER 480
>gi|237681119 breast cancer 1, early onset isoform 2 [Homo sapiens]
Length = 1884
Score = 38.9 bits (89), Expect = 0.007
Identities = 31/131 (23%), Positives = 56/131 (42%), Gaps = 9/131 (6%)
Query: 203 DQGEQQSEENASTKNLTGLSSGTEKKPHYMEVLEMRAKNPVPQLRK---FKTNVLPFRQN 259
+QG Q+E+N N+T +SG E K + + NP+ L K FKT P +
Sbjct: 533 NQGTNQTEQNGQVMNIT--NSGHENKTKGDSIQNEKNPNPIESLEKESAFKTKAEPISSS 590
Query: 260 DSSSHCQ----KSGSPISSEERRRRDKQHLDDITAARLLPLHHMPTQLLSIEESLALQKQ 315
S+ + S +P + RR+ +H+ + L L I+ + ++
Sbjct: 591 ISNMELELNIHNSKAPKKNRLRRKSSTRHIHALELVVSRNLSPPNCTELQIDSCSSSEEI 650
Query: 316 QKQNYEEMQAK 326
+K+ Y +M +
Sbjct: 651 KKKKYNQMPVR 661
>gi|237681121 breast cancer 1, early onset isoform 3 [Homo sapiens]
Length = 1816
Score = 38.9 bits (89), Expect = 0.007
Identities = 31/131 (23%), Positives = 56/131 (42%), Gaps = 9/131 (6%)
Query: 203 DQGEQQSEENASTKNLTGLSSGTEKKPHYMEVLEMRAKNPVPQLRK---FKTNVLPFRQN 259
+QG Q+E+N N+T +SG E K + + NP+ L K FKT P +
Sbjct: 486 NQGTNQTEQNGQVMNIT--NSGHENKTKGDSIQNEKNPNPIESLEKESAFKTKAEPISSS 543
Query: 260 DSSSHCQ----KSGSPISSEERRRRDKQHLDDITAARLLPLHHMPTQLLSIEESLALQKQ 315
S+ + S +P + RR+ +H+ + L L I+ + ++
Sbjct: 544 ISNMELELNIHNSKAPKKNRLRRKSSTRHIHALELVVSRNLSPPNCTELQIDSCSSSEEI 603
Query: 316 QKQNYEEMQAK 326
+K+ Y +M +
Sbjct: 604 KKKKYNQMPVR 614
>gi|6552299 breast cancer 1, early onset isoform 1 [Homo sapiens]
Length = 1863
Score = 38.9 bits (89), Expect = 0.007
Identities = 31/131 (23%), Positives = 56/131 (42%), Gaps = 9/131 (6%)
Query: 203 DQGEQQSEENASTKNLTGLSSGTEKKPHYMEVLEMRAKNPVPQLRK---FKTNVLPFRQN 259
+QG Q+E+N N+T +SG E K + + NP+ L K FKT P +
Sbjct: 533 NQGTNQTEQNGQVMNIT--NSGHENKTKGDSIQNEKNPNPIESLEKESAFKTKAEPISSS 590
Query: 260 DSSSHCQ----KSGSPISSEERRRRDKQHLDDITAARLLPLHHMPTQLLSIEESLALQKQ 315
S+ + S +P + RR+ +H+ + L L I+ + ++
Sbjct: 591 ISNMELELNIHNSKAPKKNRLRRKSSTRHIHALELVVSRNLSPPNCTELQIDSCSSSEEI 650
Query: 316 QKQNYEEMQAK 326
+K+ Y +M +
Sbjct: 651 KKKKYNQMPVR 661
>gi|38045898 RAB6-interacting protein 2 isoform epsilon [Homo
sapiens]
Length = 1116
Score = 38.1 bits (87), Expect = 0.013
Identities = 76/354 (21%), Positives = 143/354 (40%), Gaps = 48/354 (13%)
Query: 15 DLAQRSLVELREMLKR-QERLLRNEKFICKLPDKGKKIFDSFAKLKAAIAECEEVRRKSE 73
D+ +R + L++ ++ QE+L EK + L ++ K + A+ EE + E
Sbjct: 567 DVKERKVNVLQKKIENLQEQLRDKEKQMSSLKERVKSLQADTTNTDTALTTLEEALAEKE 626
Query: 74 LFNPVSLDCKLRQKAIAEVDVGTDKAQNSDPILDTSSLVPG------CSSVDNIKSSQTS 127
+ + R + + ++ K D + + SL+ G S +D + + +
Sbjct: 627 RTIERLKEQRDRDEREKQEEIDNYKKDLKD-LKEKVSLLQGDLSEKEASLLDLKEHASSL 685
Query: 128 QNQGLGRP----TLE-----GDEETSEVEYTVNKGPASSNRDRVPPSSEASEHHPRHRVS 178
+ GL + TLE EE ++E + K ++ R P H ++
Sbjct: 686 ASSGLKKDSRLKTLEIALEQKKEECLKMESQLKKAHEAALEARASPEMSDRIQHLEREIT 745
Query: 179 SQAEDTSSSFDNLFIDRLQRITIADQGEQQSEENASTKNLTGLSSGTEKK-------PHY 231
+++S + +DRL I E ++E+N K + L + + H
Sbjct: 746 RYKDESSKA--QAEVDRLLEIL----KEVENEKNDKDKKIAELERQVKDQNKKVANLKHK 799
Query: 232 MEVLEMRAKNPVPQLRKFKTNVLPFRQNDSSSHCQ----KSGSPISSEERRRRDKQHLDD 287
+V + ++ + + R+ + N+ NDSS Q K I E R+
Sbjct: 800 EQVEKKKSAQMLEEARRREDNL-----NDSSQQLQDSLRKKDDRIEELEEALRESVQ--- 851
Query: 288 ITAARLLPLHHMPTQLLS----IEESLALQKQQKQNYEEMQAKLAA--QKLAER 335
ITA R + L + + +EE L ++ KQ E M+AKL++ Q LAE+
Sbjct: 852 ITAEREMVLAQEESARTNAEKQVEELLMAMEKVKQELESMKAKLSSTQQSLAEK 905
Score = 30.0 bits (66), Expect = 3.4
Identities = 51/264 (19%), Positives = 98/264 (37%), Gaps = 18/264 (6%)
Query: 17 AQRSLVELREMLKRQERLLRNEKFICKLPDKGKKIFDSFAKLKAAIAECE-EVRRKSELF 75
A + +E R + +R+ E+ I + D+ K +L + E E E K +
Sbjct: 720 AHEAALEARASPEMSDRIQHLEREITRYKDESSKAQAEVDRLLEILKEVENEKNDKDKKI 779
Query: 76 NPVSLDCKLRQKAIAEVDVGTDKAQNSDPILDTSSLVPGCSSVDNIKSSQTSQNQGLGRP 135
+ K + K +A + + + L DN+ S L +
Sbjct: 780 AELERQVKDQNKKVANLK----HKEQVEKKKSAQMLEEARRREDNLNDSSQQLQDSLRKK 835
Query: 136 TLEGDEETSEVEYTVNKG-PASSNRDRVPPSSEASEHHPRHRVSSQAEDTSSSFDNLFID 194
D+ E+E + + ++ R+ V A E R Q E+ + + +
Sbjct: 836 ----DDRIEELEEALRESVQITAEREMVL----AQEESARTNAEKQVEELLMAMEKVK-Q 886
Query: 195 RLQRITIADQGEQQSEENASTKNLTGLSSGTEKKPHYMEVLEMRAKNPVPQLRKFKTNVL 254
L+ + QQS T +LT L + E++ H EVLEM+ + + + + N+
Sbjct: 887 ELESMKAKLSSTQQSLAEKET-HLTNLRA--ERRKHLEEVLEMKQEALLAAISEKDANIA 943
Query: 255 PFRQNDSSSHCQKSGSPISSEERR 278
+ S Q+ + + E+ R
Sbjct: 944 LLELSSSKKKTQEEVAALKREKDR 967
>gi|38045896 RAB6-interacting protein 2 isoform delta [Homo sapiens]
Length = 1088
Score = 38.1 bits (87), Expect = 0.013
Identities = 76/354 (21%), Positives = 143/354 (40%), Gaps = 48/354 (13%)
Query: 15 DLAQRSLVELREMLKR-QERLLRNEKFICKLPDKGKKIFDSFAKLKAAIAECEEVRRKSE 73
D+ +R + L++ ++ QE+L EK + L ++ K + A+ EE + E
Sbjct: 539 DVKERKVNVLQKKIENLQEQLRDKEKQMSSLKERVKSLQADTTNTDTALTTLEEALAEKE 598
Query: 74 LFNPVSLDCKLRQKAIAEVDVGTDKAQNSDPILDTSSLVPG------CSSVDNIKSSQTS 127
+ + R + + ++ K D + + SL+ G S +D + + +
Sbjct: 599 RTIERLKEQRDRDEREKQEEIDNYKKDLKD-LKEKVSLLQGDLSEKEASLLDLKEHASSL 657
Query: 128 QNQGLGRP----TLE-----GDEETSEVEYTVNKGPASSNRDRVPPSSEASEHHPRHRVS 178
+ GL + TLE EE ++E + K ++ R P H ++
Sbjct: 658 ASSGLKKDSRLKTLEIALEQKKEECLKMESQLKKAHEAALEARASPEMSDRIQHLEREIT 717
Query: 179 SQAEDTSSSFDNLFIDRLQRITIADQGEQQSEENASTKNLTGLSSGTEKK-------PHY 231
+++S + +DRL I E ++E+N K + L + + H
Sbjct: 718 RYKDESSKA--QAEVDRLLEIL----KEVENEKNDKDKKIAELERQVKDQNKKVANLKHK 771
Query: 232 MEVLEMRAKNPVPQLRKFKTNVLPFRQNDSSSHCQ----KSGSPISSEERRRRDKQHLDD 287
+V + ++ + + R+ + N+ NDSS Q K I E R+
Sbjct: 772 EQVEKKKSAQMLEEARRREDNL-----NDSSQQLQDSLRKKDDRIEELEEALRESVQ--- 823
Query: 288 ITAARLLPLHHMPTQLLS----IEESLALQKQQKQNYEEMQAKLAA--QKLAER 335
ITA R + L + + +EE L ++ KQ E M+AKL++ Q LAE+
Sbjct: 824 ITAEREMVLAQEESARTNAEKQVEELLMAMEKVKQELESMKAKLSSTQQSLAEK 877
Score = 30.0 bits (66), Expect = 3.4
Identities = 51/264 (19%), Positives = 98/264 (37%), Gaps = 18/264 (6%)
Query: 17 AQRSLVELREMLKRQERLLRNEKFICKLPDKGKKIFDSFAKLKAAIAECE-EVRRKSELF 75
A + +E R + +R+ E+ I + D+ K +L + E E E K +
Sbjct: 692 AHEAALEARASPEMSDRIQHLEREITRYKDESSKAQAEVDRLLEILKEVENEKNDKDKKI 751
Query: 76 NPVSLDCKLRQKAIAEVDVGTDKAQNSDPILDTSSLVPGCSSVDNIKSSQTSQNQGLGRP 135
+ K + K +A + + + L DN+ S L +
Sbjct: 752 AELERQVKDQNKKVANLK----HKEQVEKKKSAQMLEEARRREDNLNDSSQQLQDSLRKK 807
Query: 136 TLEGDEETSEVEYTVNKG-PASSNRDRVPPSSEASEHHPRHRVSSQAEDTSSSFDNLFID 194
D+ E+E + + ++ R+ V A E R Q E+ + + +
Sbjct: 808 ----DDRIEELEEALRESVQITAEREMVL----AQEESARTNAEKQVEELLMAMEKVK-Q 858
Query: 195 RLQRITIADQGEQQSEENASTKNLTGLSSGTEKKPHYMEVLEMRAKNPVPQLRKFKTNVL 254
L+ + QQS T +LT L + E++ H EVLEM+ + + + + N+
Sbjct: 859 ELESMKAKLSSTQQSLAEKET-HLTNLRA--ERRKHLEEVLEMKQEALLAAISEKDANIA 915
Query: 255 PFRQNDSSSHCQKSGSPISSEERR 278
+ S Q+ + + E+ R
Sbjct: 916 LLELSSSKKKTQEEVAALKREKDR 939
>gi|148596949 nucleolar and coiled-body phosphoprotein 1 [Homo
sapiens]
Length = 699
Score = 38.1 bits (87), Expect = 0.013
Identities = 56/233 (24%), Positives = 86/233 (36%), Gaps = 35/233 (15%)
Query: 138 EGDEETSEVEYTVNKGPASSNRDRVPPSSEASEHHPRHRVSSQAEDTSSSFDNLFIDRLQ 197
E D + E + K S + PP+ +A+E SS + D+ SS D+
Sbjct: 328 ESDSSSEEEKKPPTKAVVSKATTKPPPAKKAAES------SSDSSDSDSSEDD------- 374
Query: 198 RITIADQGEQQSEENASTKNLTGLSSGTEKKPHYMEVLEMRAKNPVPQLRKFKTNVLPFR 257
E S+ +TKN + + T K P K PV +K T R
Sbjct: 375 --------EAPSKPAGTTKNSSNKPAVTTKSPAVKPA--AAPKQPVGGGQKLLT-----R 419
Query: 258 QNDSSSHCQKSGSPISSEERRRR---DKQHLDDITAARLLPLHHMPTQLLSIEESLALQK 314
+ DSSS ++S S S EE+ ++ + AA LP P S + S
Sbjct: 420 KADSSSSEEESSS--SEEEKTKKMVATTKPKATAKAALSLPAKQAPQG--SRDSSSDSDS 475
Query: 315 QQKQNYEEMQAKLAAQKLAERLNIKMRSYNPEGESSGRYREVRDEDDDWSSDE 367
+ EE +K A +K +++ P G+ D SS+E
Sbjct: 476 SSSEEEEEKTSKSAVKKKPQKVAGGAAPSKPASAKKGKAESSNSSSSDDSSEE 528
>gi|114155142 nuclear pore complex-associated protein TPR [Homo
sapiens]
Length = 2363
Score = 36.6 bits (83), Expect = 0.037
Identities = 64/334 (19%), Positives = 137/334 (41%), Gaps = 29/334 (8%)
Query: 11 QAPEDLAQRSLVELREMLKRQERLLRNEKFICKLPDKGKKIFDSFAKLKAAIAECEEVRR 70
Q ++L +L ++ +L+R E + +L + +K+ + LK + EV +
Sbjct: 809 QRGQNLLLTNLQTIQGILERSETETKQ-----RLSSQIEKLEHEISHLKKKLEN--EVEQ 861
Query: 71 KSELFNPVSLDCKLRQKAIAEVDVGTDKAQNSDPIL-----DTSSLVPGCSSVDNIKSSQ 125
+ L +LD +L ++D T+ N+ +L + ++L S+++ +SQ
Sbjct: 862 RHTLTR--NLDVQLLDTK-RQLDTETNLHLNTKELLKNAQKEIATLKQHLSNMEVQVASQ 918
Query: 126 TSQNQGLGRPTLEGDEETSEVEYTVNKGPASSNRDRVPPSSEASEHHPRHRVSSQAEDTS 185
+SQ G G+P+ + D + + + + ++R+ S+ E + S +
Sbjct: 919 SSQRTGKGQPSNKEDVDDLVSQLRQTEEQVNDLKERLKTSTSNVEQYQAMVTSLEESLNK 978
Query: 186 SSFDNLFIDRLQRITIADQGEQQSEENASTKNLTGLSSGTEKKPHYMEVLEMRAKNPVPQ 245
+ + + + + E Q++ + EK+ ++ + RA + Q
Sbjct: 979 EKQVTEEVRKNIEVRLKESAEFQTQLEKKLMEV-------EKEKQELQDDKRRAIESMEQ 1031
Query: 246 LRKFKTNVLPFRQNDSSSHCQKSGSPISSEERRRRDKQHLDDITA------ARLLPLHHM 299
L QN+ Q++ + +S+E++ RRD Q I R L LH
Sbjct: 1032 QLSELKKTLSSVQNEVQEALQRASTALSNEQQARRDCQEQAKIAVEAQNKYERELMLHAA 1091
Query: 300 PTQLL-SIEESLALQKQQKQNYEEMQAKLAAQKL 332
+ L + +E ++ +Q+ EE K +Q L
Sbjct: 1092 DVEALQAAKEQVSKMASVRQHLEETTQKAESQLL 1125
>gi|146229340 mutated in colorectal cancers isoform 1 [Homo sapiens]
Length = 1019
Score = 35.0 bits (79), Expect = 0.11
Identities = 36/148 (24%), Positives = 63/148 (42%), Gaps = 8/148 (5%)
Query: 209 SEENASTKNLTGLSSGTEKKPHYMEVLEMRAKNPVPQLRKFKTNVLPFRQNDSSSHCQKS 268
S + ST + T S TE + + E R K+ + QL+ + V S H
Sbjct: 733 SNSHTSTTSSTASSCDTE----FTKEDEQRLKDYIQQLKNDRAAVKLTMLELESIHID-- 786
Query: 269 GSPISSEERRRRDKQHLDDITAARLLPLHHMPTQLLSIEESLALQKQQKQNYEEMQAKLA 328
P+S + + R D Q LD A + L M ++ ++ L L +++K+ E +
Sbjct: 787 --PLSYDVKPRGDSQRLDLENAVLMQELMAMKEEMAELKAQLYLLEKEKKALELKLSTRE 844
Query: 329 AQKLAERLNIKMRSYNPEGESSGRYREV 356
AQ+ A ++I+ E + R R +
Sbjct: 845 AQEQAYLVHIEHLKSEVEEQKEQRMRSL 872
>gi|14195601 protein phosphatase 1, regulatory (inhibitor) subunit
12B isoform b [Homo sapiens]
Length = 998
Score = 35.0 bits (79), Expect = 0.11
Identities = 28/96 (29%), Positives = 45/96 (46%), Gaps = 7/96 (7%)
Query: 11 QAPEDLAQRSLVELREMLKRQERLLRNEKFICKL---PDKGKKIFDSFAKLKAAIAECEE 67
Q P D+A LVE E+L++++ +LR+EK D KI F K K + EE
Sbjct: 284 QTPFDVADEGLVEHLELLQKKQNVLRSEKETRNKLIESDLNSKIQSGFFKNKEKMLYEEE 343
Query: 68 VRRKSELFNPVSLDCKLRQKAIAEVDVGTDKAQNSD 103
+ E+ + K + +E + G D+A S+
Sbjct: 344 TPKSQEM----EEENKESSSSSSEEEEGEDEASESE 375
>gi|4505319 protein phosphatase 1, regulatory (inhibitor) subunit
12B isoform a [Homo sapiens]
Length = 982
Score = 35.0 bits (79), Expect = 0.11
Identities = 28/96 (29%), Positives = 45/96 (46%), Gaps = 7/96 (7%)
Query: 11 QAPEDLAQRSLVELREMLKRQERLLRNEKFICKL---PDKGKKIFDSFAKLKAAIAECEE 67
Q P D+A LVE E+L++++ +LR+EK D KI F K K + EE
Sbjct: 284 QTPFDVADEGLVEHLELLQKKQNVLRSEKETRNKLIESDLNSKIQSGFFKNKEKMLYEEE 343
Query: 68 VRRKSELFNPVSLDCKLRQKAIAEVDVGTDKAQNSD 103
+ E+ + K + +E + G D+A S+
Sbjct: 344 TPKSQEM----EEENKESSSSSSEEEEGEDEASESE 375
>gi|4505129 mutated in colorectal cancers isoform 2 [Homo sapiens]
Length = 829
Score = 35.0 bits (79), Expect = 0.11
Identities = 36/148 (24%), Positives = 63/148 (42%), Gaps = 8/148 (5%)
Query: 209 SEENASTKNLTGLSSGTEKKPHYMEVLEMRAKNPVPQLRKFKTNVLPFRQNDSSSHCQKS 268
S + ST + T S TE + + E R K+ + QL+ + V S H
Sbjct: 543 SNSHTSTTSSTASSCDTE----FTKEDEQRLKDYIQQLKNDRAAVKLTMLELESIHID-- 596
Query: 269 GSPISSEERRRRDKQHLDDITAARLLPLHHMPTQLLSIEESLALQKQQKQNYEEMQAKLA 328
P+S + + R D Q LD A + L M ++ ++ L L +++K+ E +
Sbjct: 597 --PLSYDVKPRGDSQRLDLENAVLMQELMAMKEEMAELKAQLYLLEKEKKALELKLSTRE 654
Query: 329 AQKLAERLNIKMRSYNPEGESSGRYREV 356
AQ+ A ++I+ E + R R +
Sbjct: 655 AQEQAYLVHIEHLKSEVEEQKEQRMRSL 682
>gi|224028289 tetratricopeptide repeat domain 28 [Homo sapiens]
Length = 2481
Score = 33.9 bits (76), Expect = 0.24
Identities = 53/206 (25%), Positives = 84/206 (40%), Gaps = 25/206 (12%)
Query: 13 PEDLAQRSLVELREMLKRQERLLRNEKFICKL--PDKGKKIFDSFAKLKA----AIAECE 66
P++LAQ+ L E + L ERL R+ + K P+ G + S A +A A +
Sbjct: 2159 PQELAQKILEETQSHLIAVERLQRSGGQVSKSNNPEDGVQAPSSTAVFRASETSAFSRPV 2218
Query: 67 EVRRKSELFNPVSLDCK--LRQKAIAEVDVGTDKAQNSD------PILDTSSLVPGCSSV 118
+KS+ +PV++ K R ++ +V G S+ P + PGC
Sbjct: 2219 LSHQKSQP-SPVTVKPKPPARSSSLPKVSSGYSSPTTSEMSIKDSPSQHSGRPSPGC--- 2274
Query: 119 DNIKSSQTSQNQGLGRPTLEGDEETSEVEYTVNKGPASSNRDRVPPSSEASEHHPRHRVS 178
SQTSQ L +P + +S ++K P + + S S P S
Sbjct: 2275 ----DSQTSQ---LDQPLFKLKYPSSPYSAHISKSPRNMSPSSGHQSPAGSAPSPALSYS 2327
Query: 179 SQAEDTSSSFDNLFIDRLQRITIADQ 204
S SS D ID+L+ I ++
Sbjct: 2328 SAGSARSSPADAPDIDKLKMAAIDEK 2353
>gi|209954788 activating transcription factor 6 beta isoform b [Homo
sapiens]
Length = 700
Score = 33.9 bits (76), Expect = 0.24
Identities = 15/48 (31%), Positives = 33/48 (68%), Gaps = 1/48 (2%)
Query: 26 EMLKRQERLLRNEKFICKLPDKGKKIFDSF-AKLKAAIAECEEVRRKS 72
++LKRQ+R+++N + C+ K K+ A+L+A +A+ +++RR++
Sbjct: 321 KLLKRQQRMIKNRESACQSRRKKKEYLQGLEARLQAVLADNQQLRREN 368
>gi|20631977 activating transcription factor 6 beta isoform a [Homo
sapiens]
Length = 703
Score = 33.9 bits (76), Expect = 0.24
Identities = 15/48 (31%), Positives = 33/48 (68%), Gaps = 1/48 (2%)
Query: 26 EMLKRQERLLRNEKFICKLPDKGKKIFDSF-AKLKAAIAECEEVRRKS 72
++LKRQ+R+++N + C+ K K+ A+L+A +A+ +++RR++
Sbjct: 324 KLLKRQQRMIKNRESACQSRRKKKEYLQGLEARLQAVLADNQQLRREN 371
>gi|109134347 NY-REN-58 antigen [Homo sapiens]
Length = 701
Score = 33.9 bits (76), Expect = 0.24
Identities = 46/201 (22%), Positives = 81/201 (40%), Gaps = 7/201 (3%)
Query: 12 APEDLAQRSLVELREMLKRQERLLRNEKFICKLPDKGKKIFDSFAKLKAAIAECEEVRRK 71
A E+ Q+ +V E L+ + RL EK + + D + + A EE+ RK
Sbjct: 383 AKEEGYQKLVVLQDEKLELENRLADLEKMKVEHDVWRQSEKDQYEEKLRASQMAEEITRK 442
Query: 72 SELFNPVSLDCKLRQKAIAEVDVGTDKAQNSDPILDTSSLVPGCSSVDNIKSSQTSQNQG 131
EL S+ KL+Q+ + + +K +NSD SSL +S+ ++ + NQ
Sbjct: 443 -EL---QSVRLKLQQQIVTIENAEKEKNENSDLKQQISSLQIQVTSLAQSENDLLNSNQM 498
Query: 132 LGRPTLEGDEETSEVEYTVNKGPASSNRDRVPPSSEASEHHPRHRVSSQAEDTSSSFDNL 191
L +E K A ++ + +H++ + D + N
Sbjct: 499 LKEMVERLKQECRNFRSQAEK--AQLEAEKTLEEKQIQWLEEKHKLHERITDREEKY-NQ 555
Query: 192 FIDRLQRITIADQGEQQSEEN 212
++LQR IA + + EN
Sbjct: 556 AKEKLQRAAIAQKKRKSLHEN 576
>gi|109134355 NY-REN-58 antigen [Homo sapiens]
Length = 701
Score = 33.9 bits (76), Expect = 0.24
Identities = 46/201 (22%), Positives = 81/201 (40%), Gaps = 7/201 (3%)
Query: 12 APEDLAQRSLVELREMLKRQERLLRNEKFICKLPDKGKKIFDSFAKLKAAIAECEEVRRK 71
A E+ Q+ +V E L+ + RL EK + + D + + A EE+ RK
Sbjct: 383 AKEEGYQKLVVLQDEKLELENRLADLEKMKVEHDVWRQSEKDQYEEKLRASQMAEEITRK 442
Query: 72 SELFNPVSLDCKLRQKAIAEVDVGTDKAQNSDPILDTSSLVPGCSSVDNIKSSQTSQNQG 131
EL S+ KL+Q+ + + +K +NSD SSL +S+ ++ + NQ
Sbjct: 443 -EL---QSVRLKLQQQIVTIENAEKEKNENSDLKQQISSLQIQVTSLAQSENDLLNSNQM 498
Query: 132 LGRPTLEGDEETSEVEYTVNKGPASSNRDRVPPSSEASEHHPRHRVSSQAEDTSSSFDNL 191
L +E K A ++ + +H++ + D + N
Sbjct: 499 LKEMVERLKQECRNFRSQAEK--AQLEAEKTLEEKQIQWLEEKHKLHERITDREEKY-NQ 555
Query: 192 FIDRLQRITIADQGEQQSEEN 212
++LQR IA + + EN
Sbjct: 556 AKEKLQRAAIAQKKRKSLHEN 576
>gi|189181720 proteoglycan 4 isoform B [Homo sapiens]
Length = 1363
Score = 33.5 bits (75), Expect = 0.31
Identities = 27/115 (23%), Positives = 45/115 (39%), Gaps = 6/115 (5%)
Query: 115 CSSVDNIKSSQTSQNQGLGRPTLEGDEETSEVEYTVNKGPASSNRDRVPPSSEASEHHPR 174
C+ V N S +S+ P G +T ++ T + P N+ + E+ E
Sbjct: 63 CAEVHNPTSPPSSKKA----PPPSGASQT--IKSTTKRSPKPPNKKKTKKVIESEEITEE 116
Query: 175 HRVSSQAEDTSSSFDNLFIDRLQRITIADQGEQQSEENASTKNLTGLSSGTEKKP 229
H VS E +SSS + +++I + E K + T+KKP
Sbjct: 117 HSVSENQESSSSSSSSSSSSTIRKIKSSKNSAANRELQKKLKVKDNKKNRTKKKP 171
>gi|67190163 proteoglycan 4 isoform A [Homo sapiens]
Length = 1404
Score = 33.5 bits (75), Expect = 0.31
Identities = 27/115 (23%), Positives = 45/115 (39%), Gaps = 6/115 (5%)
Query: 115 CSSVDNIKSSQTSQNQGLGRPTLEGDEETSEVEYTVNKGPASSNRDRVPPSSEASEHHPR 174
C+ V N S +S+ P G +T ++ T + P N+ + E+ E
Sbjct: 104 CAEVHNPTSPPSSKKA----PPPSGASQT--IKSTTKRSPKPPNKKKTKKVIESEEITEE 157
Query: 175 HRVSSQAEDTSSSFDNLFIDRLQRITIADQGEQQSEENASTKNLTGLSSGTEKKP 229
H VS E +SSS + +++I + E K + T+KKP
Sbjct: 158 HSVSENQESSSSSSSSSSSSTIRKIKSSKNSAANRELQKKLKVKDNKKNRTKKKP 212
>gi|54607116 leiomodin 3 (fetal) [Homo sapiens]
Length = 560
Score = 33.5 bits (75), Expect = 0.31
Identities = 43/168 (25%), Positives = 72/168 (42%), Gaps = 23/168 (13%)
Query: 202 ADQGEQQSEENASTKNLTGLSSGTEKK-PHYMEVLEMRAKNPVPQLRKFKTNVLPFRQND 260
+DQ E EE + L LS+ K+ MEV+ PV ++K +T+ P
Sbjct: 8 SDQEELLDEEINEDEILANLSAEELKELQSEMEVMAPDPSLPVGMIQKDQTDKPP----- 62
Query: 261 SSSHCQKSGSPISSEERRRRDKQHLDDITAARLLPLHHMPTQLLSIEESLALQKQQKQNY 320
+ + KS E+ R R+L +P + EE K Q+++
Sbjct: 63 TGNFNHKSLVDYMYWEKASR-----------RMLEEERVPVTFVKSEE-----KTQEEHE 106
Query: 321 E-EMQAKLAAQKLAERLNIKMRSYNPEGESSGRYREVRDEDDDWSSDE 367
E E + K AQ L E+LN ++ + E + S +E +ED++ D+
Sbjct: 107 EIEKRNKNMAQYLKEKLNNEIVANKRESKGSSNIQETDEEDEEEEDDD 154
>gi|223029388 CD209 molecule isoform 4 [Homo sapiens]
Length = 398
Score = 33.1 bits (74), Expect = 0.41
Identities = 20/62 (32%), Positives = 35/62 (56%), Gaps = 5/62 (8%)
Query: 23 ELREMLKRQE---RLLRNEKFICKLPDKGKK--IFDSFAKLKAAIAECEEVRRKSELFNP 77
EL E K+QE L R + + +LP+K K+ I+ +LKAA+ E E ++ E++
Sbjct: 182 ELPEKSKQQEIYQELTRLKAAVGELPEKSKQQEIYQELTRLKAAVGELPEKSKQQEIYQE 241
Query: 78 VS 79
++
Sbjct: 242 LT 243
Score = 32.3 bits (72), Expect = 0.69
Identities = 20/62 (32%), Positives = 34/62 (54%), Gaps = 5/62 (8%)
Query: 23 ELREMLKRQE---RLLRNEKFICKLPDKGKK--IFDSFAKLKAAIAECEEVRRKSELFNP 77
EL E K QE L R + + +LP+K K+ I+ +LKAA+ E E ++ E++
Sbjct: 159 ELPEKSKMQEIYQELTRLKAAVGELPEKSKQQEIYQELTRLKAAVGELPEKSKQQEIYQE 218
Query: 78 VS 79
++
Sbjct: 219 LT 220
Score = 29.6 bits (65), Expect = 4.5
Identities = 19/62 (30%), Positives = 33/62 (53%), Gaps = 5/62 (8%)
Query: 23 ELREMLKRQE---RLLRNEKFICKLPDKGK--KIFDSFAKLKAAIAECEEVRRKSELFNP 77
EL E K QE L + + + +LP+K K +I+ +LKAA+ E E + E++
Sbjct: 90 ELSEKSKLQEIYQELTQLKAAVGELPEKSKLQEIYQELTRLKAAVGELPEKSKLQEIYQE 149
Query: 78 VS 79
++
Sbjct: 150 LT 151
>gi|223029386 CD209 molecule isoform 3 [Homo sapiens]
Length = 380
Score = 33.1 bits (74), Expect = 0.41
Identities = 20/62 (32%), Positives = 35/62 (56%), Gaps = 5/62 (8%)
Query: 23 ELREMLKRQE---RLLRNEKFICKLPDKGKK--IFDSFAKLKAAIAECEEVRRKSELFNP 77
EL E K+QE L R + + +LP+K K+ I+ +LKAA+ E E ++ E++
Sbjct: 158 ELPEKSKQQEIYQELTRLKAAVGELPEKSKQQEIYQELTRLKAAVGELPEKSKQQEIYQE 217
Query: 78 VS 79
++
Sbjct: 218 LT 219
Score = 32.3 bits (72), Expect = 0.69
Identities = 20/62 (32%), Positives = 34/62 (54%), Gaps = 5/62 (8%)
Query: 23 ELREMLKRQE---RLLRNEKFICKLPDKGKK--IFDSFAKLKAAIAECEEVRRKSELFNP 77
EL E K QE L R + + +LP+K K+ I+ +LKAA+ E E ++ E++
Sbjct: 135 ELPEKSKMQEIYQELTRLKAAVGELPEKSKQQEIYQELTRLKAAVGELPEKSKQQEIYQE 194
Query: 78 VS 79
++
Sbjct: 195 LT 196
Score = 29.6 bits (65), Expect = 4.5
Identities = 19/62 (30%), Positives = 33/62 (53%), Gaps = 5/62 (8%)
Query: 23 ELREMLKRQE---RLLRNEKFICKLPDKGK--KIFDSFAKLKAAIAECEEVRRKSELFNP 77
EL E K QE L + + + +LP+K K +I+ +LKAA+ E E + E++
Sbjct: 66 ELSEKSKLQEIYQELTQLKAAVGELPEKSKLQEIYQELTRLKAAVGELPEKSKLQEIYQE 125
Query: 78 VS 79
++
Sbjct: 126 LT 127
>gi|223029382 CD209 molecule isoform 6 [Homo sapiens]
Length = 360
Score = 33.1 bits (74), Expect = 0.41
Identities = 20/62 (32%), Positives = 35/62 (56%), Gaps = 5/62 (8%)
Query: 23 ELREMLKRQE---RLLRNEKFICKLPDKGKK--IFDSFAKLKAAIAECEEVRRKSELFNP 77
EL E K+QE L R + + +LP+K K+ I+ +LKAA+ E E ++ E++
Sbjct: 138 ELPEKSKQQEIYQELTRLKAAVGELPEKSKQQEIYQELTRLKAAVGELPEKSKQQEIYQE 197
Query: 78 VS 79
++
Sbjct: 198 LT 199
Score = 32.3 bits (72), Expect = 0.69
Identities = 20/62 (32%), Positives = 34/62 (54%), Gaps = 5/62 (8%)
Query: 23 ELREMLKRQE---RLLRNEKFICKLPDKGKK--IFDSFAKLKAAIAECEEVRRKSELFNP 77
EL E K QE L R + + +LP+K K+ I+ +LKAA+ E E ++ E++
Sbjct: 115 ELPEKSKMQEIYQELTRLKAAVGELPEKSKQQEIYQELTRLKAAVGELPEKSKQQEIYQE 174
Query: 78 VS 79
++
Sbjct: 175 LT 176
Score = 29.6 bits (65), Expect = 4.5
Identities = 19/62 (30%), Positives = 33/62 (53%), Gaps = 5/62 (8%)
Query: 23 ELREMLKRQE---RLLRNEKFICKLPDKGK--KIFDSFAKLKAAIAECEEVRRKSELFNP 77
EL E K QE L + + + +LP+K K +I+ +LKAA+ E E + E++
Sbjct: 46 ELSEKSKLQEIYQELTQLKAAVGELPEKSKLQEIYQELTRLKAAVGELPEKSKLQEIYQE 105
Query: 78 VS 79
++
Sbjct: 106 LT 107
>gi|10863957 CD209 molecule isoform 1 [Homo sapiens]
Length = 404
Score = 33.1 bits (74), Expect = 0.41
Identities = 20/62 (32%), Positives = 35/62 (56%), Gaps = 5/62 (8%)
Query: 23 ELREMLKRQE---RLLRNEKFICKLPDKGKK--IFDSFAKLKAAIAECEEVRRKSELFNP 77
EL E K+QE L R + + +LP+K K+ I+ +LKAA+ E E ++ E++
Sbjct: 182 ELPEKSKQQEIYQELTRLKAAVGELPEKSKQQEIYQELTRLKAAVGELPEKSKQQEIYQE 241
Query: 78 VS 79
++
Sbjct: 242 LT 243
Score = 32.3 bits (72), Expect = 0.69
Identities = 20/62 (32%), Positives = 34/62 (54%), Gaps = 5/62 (8%)
Query: 23 ELREMLKRQE---RLLRNEKFICKLPDKGKK--IFDSFAKLKAAIAECEEVRRKSELFNP 77
EL E K QE L R + + +LP+K K+ I+ +LKAA+ E E ++ E++
Sbjct: 159 ELPEKSKMQEIYQELTRLKAAVGELPEKSKQQEIYQELTRLKAAVGELPEKSKQQEIYQE 218
Query: 78 VS 79
++
Sbjct: 219 LT 220
Score = 29.6 bits (65), Expect = 4.5
Identities = 19/62 (30%), Positives = 33/62 (53%), Gaps = 5/62 (8%)
Query: 23 ELREMLKRQE---RLLRNEKFICKLPDKGK--KIFDSFAKLKAAIAECEEVRRKSELFNP 77
EL E K QE L + + + +LP+K K +I+ +LKAA+ E E + E++
Sbjct: 90 ELSEKSKLQEIYQELTQLKAAVGELPEKSKLQEIYQELTRLKAAVGELPEKSKLQEIYQE 149
Query: 78 VS 79
++
Sbjct: 150 LT 151
>gi|52426735 ankyrin 2 isoform 1 [Homo sapiens]
Length = 3957
Score = 33.1 bits (74), Expect = 0.41
Identities = 38/140 (27%), Positives = 63/140 (45%), Gaps = 15/140 (10%)
Query: 89 IAEVDVGTDKAQNSDPILDTSSLVPGCSSVDNIKSSQTSQNQGL--GRPTLEGDEETSEV 146
+A++ G D +P++ P SS+D+ S + Q Q + + T + +E+T E
Sbjct: 2670 LAQLKKGADSGLLPEPVIRVQPPSPLPSSMDSNSSPEEVQFQPVVSKQYTFKMNEDTQEE 2729
Query: 147 EYTVNKGPASSNRDRVPPSSEASEHHPRHRVSSQAEDTSSSFDNLFIDRLQ-RITIADQG 205
P S ++ SE+ RH VS++AED S+D L D Q +I
Sbjct: 2730 -------PGKSEEEK---DSESHLAEDRHAVSTEAED--RSYDKLNRDTDQPKICDGHGC 2777
Query: 206 EQQSEENASTKNLTGLSSGT 225
E S +++ +GL S T
Sbjct: 2778 EAMSPSSSAAPVSSGLQSPT 2797
>gi|39753957 lamina-associated polypeptide 1B [Homo sapiens]
Length = 583
Score = 33.1 bits (74), Expect = 0.41
Identities = 54/245 (22%), Positives = 92/245 (37%), Gaps = 23/245 (9%)
Query: 104 PILDTSSLVPGCSSVDNIKSSQTSQNQGLGRPTLEGDEE---TSEVEYTVNKGP------ 154
P++ L SS ++ SSQT +Q + + T+ +E + ++ + + P
Sbjct: 144 PVMTRRGLRDSHSSEEDEASSQTDLSQTISKKTVRSIQEAPVSEDLVIRLRRPPLRYPRY 203
Query: 155 -ASSNRDRVPPSSEA--------SEHHPRHRVSSQAEDTSSSFDNLFIDRLQRITIADQG 205
A+S + +V S E S H V +++ D+ S D Q I Q
Sbjct: 204 EATSVQQKVNFSEEGETEEDDQDSSHSSVTTVKARSRDSDESGDKTTRSSSQYIESFWQS 263
Query: 206 EQQSEENASTKNLTGLSSGTEKKPHYMEVLEMRAKNPVPQLRKFKTNVLPFRQNDSSSHC 265
Q A K + LSSG +K P R + + K+ + Q+ S+S
Sbjct: 264 SQSQNFTAHDKQPSVLSSGYQKTPQEWAPQTARIRTRMQNDSILKSEL--GNQSPSTSSR 321
Query: 266 QKSGSPISSEERRRRDKQHLDDITAARLLPLHHMPT---QLLSIEESLALQKQQKQNYEE 322
Q +G P ++ +R L I A T + +++E Q K Y+
Sbjct: 322 QVTGQPQNASFVKRNRWWLLPLIAALASGSFWFFSTPEVETTAVQEFQNQMNQLKNKYQG 381
Query: 323 MQAKL 327
KL
Sbjct: 382 QDEKL 386
>gi|7656940 chromosome 1 open reading frame 9 protein isoform 1
[Homo sapiens]
Length = 1254
Score = 33.1 bits (74), Expect = 0.41
Identities = 54/239 (22%), Positives = 97/239 (40%), Gaps = 31/239 (12%)
Query: 83 KLRQKAIAEVDVGTDKAQNSDPILDT----------SSLVPGCSSVDNIKSSQTSQNQGL 132
KL+ +I +V T+ + S P+++T S+ V +V+NI SS TS+ +
Sbjct: 86 KLKDDSIVDVQ-NTESKKLSPPVVETLPTVDLHEESSNAVVDSETVENISSSSTSEITPI 144
Query: 133 ---------GRPTLEGDEETSEVEYTVNKGPASSNRDRVPPSSEASEHHPRHRVSSQAED 183
G + ET + E + G A + S S P V E+
Sbjct: 145 SKLDEIEKSGTIPIAKPSETEQSETDCDVGEALDASAPIEQPSFVSP--PDSLVGQHIEN 202
Query: 184 TSSSFDNLFIDRLQ---RITIADQ--GEQQSEENASTKNLTGLSSGTEKKPHYMEVLEMR 238
SSS I + + +++ ++Q G+ +S NAS NL SS K
Sbjct: 203 VSSSHGKGKITKSEFESKVSASEQGGGDPKSALNAS-DNLKNESSDYTKPGDIDPTSVAS 261
Query: 239 AKNP--VPQLRKFKTNVLPFRQNDSSS-HCQKSGSPISSEERRRRDKQHLDDITAARLL 294
K+P +P ++K V+ + S S H +G ++++ ++ + A++L
Sbjct: 262 PKDPEDIPTFDEWKKKVMEVEKEKSQSMHASSNGGSHATKKVQKNRNNYASVECGAKIL 320
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.310 0.126 0.349
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 13,742,210
Number of Sequences: 37866
Number of extensions: 597464
Number of successful extensions: 2457
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 15
Number of HSP's successfully gapped in prelim test: 127
Number of HSP's that attempted gapping in prelim test: 2350
Number of HSP's gapped (non-prelim): 243
length of query: 368
length of database: 18,247,518
effective HSP length: 104
effective length of query: 264
effective length of database: 14,309,454
effective search space: 3777695856
effective search space used: 3777695856
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 63 (28.9 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.