Guide to the Human Genome
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Name: CD209 Sequence: fasta or formatted (404aa) NCBI GI: 10863957
Description:

CD209 molecule isoform 1

Referenced in:

Lectin Families

Other entries for this name:
alt prot [268aa] CD209 molecule isoform 5
alt prot [360aa] CD209 molecule isoform 6
alt prot [312aa] CD209 molecule isoform 7
alt prot [380aa] CD209 molecule isoform 3
alt prot [398aa] CD209 molecule isoform 4
alt prot [243aa] CD209 molecule isoform 8
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             7.2         29           2
 C cysteine            2.2          9           1
 D aspartate           2.2          9           2
 E glutamate          11.1         45           3
 F phenylalanine       2.7         11           2
 G glycine             5.9         24           1
 H histidine           0.7          3           1
 I isoleucine          3.0         12           1
 K lysine              7.9         32           2
 L leucine            12.9         52           2
 M methionine          1.0          4           1
 N asparagine          3.5         14           2
 P proline             5.0         20           3
 Q glutamine           9.9         40           2
 R arginine            3.7         15           1
 S serine              7.9         32           2
 T threonine           3.7         15           1
 V valine              4.2         17           2
 W tryptophan          2.5         10           1
 Y tyrosine            2.7         11           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   CD209 molecule isoform 1 
CD209                 0.977   CD209 molecule isoform 4 
CD209                 0.924   CD209 molecule isoform 3 
CD209                 0.864   CD209 molecule isoform 6 
CLEC4M                0.792   C-type lectin domain family 4, member M isoform 1 [H...
CLEC4M                0.717   C-type lectin domain family 4, member M isoform 8 [...
CLEC4M                0.716   C-type lectin domain family 4, member M isoform 12 ...
CD209                 0.695   CD209 molecule isoform 7 
CLEC4M                0.693   C-type lectin domain family 4, member M isoform 2 [...
CLEC4M                0.651   C-type lectin domain family 4, member M isoform 9 [...
CLEC4M                0.603   C-type lectin domain family 4, member M isoform 11 ...
CD209                 0.580   CD209 molecule isoform 5 
CLEC4M                0.572   C-type lectin domain family 4, member M isoform 3 [...
CD209                 0.440   CD209 molecule isoform 8 
CLEC4M                0.416   C-type lectin domain family 4, member M isoform 7 [...
CLEC4M                0.327   C-type lectin domain family 4, member M isoform 10 ...
CLEC10A               0.110   C-type lectin, superfamily member 14 isoform 1 [Homo...
CLEC4E                0.109   C-type lectin domain family 4, member E 
CLEC10A               0.109   C-type lectin, superfamily member 14 isoform 2 [Homo...
FCER2                 0.098   Fc fragment of IgE, low affinity II, receptor for (C...
CLEC4C                0.095   C-type lectin domain family 4, member C isoform 2 [H...
CLEC4G                0.094   C-type lectin domain family 4, member G 
CLEC4C                0.094   C-type lectin domain family 4, member C isoform 1 [H...
CLEC4D                0.094   C-type lectin domain family 4, member D 
ASGR1                 0.094   asialoglycoprotein receptor 1 
ASGR2                 0.090   asialoglycoprotein receptor 2 isoform c 
ASGR2                 0.090   asialoglycoprotein receptor 2 isoform b 
ASGR2                 0.090   asialoglycoprotein receptor 2 isoform a 
ASGR2                 0.090   asialoglycoprotein receptor 2 isoform a 
CLEC12B               0.085   C-type lectin domain family 12, member B isoform 1 ...
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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