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Search of human proteins with 217416379
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|217416379 heterogeneous nuclear ribonucleoprotein L-like
isoform 2 [Homo sapiens]
(537 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|217416379 heterogeneous nuclear ribonucleoprotein L-like isof... 1095 0.0
gi|20149709 heterogeneous nuclear ribonucleoprotein L-like isofo... 1090 0.0
gi|52632383 heterogeneous nuclear ribonucleoprotein L isoform a ... 557 e-158
gi|52632385 heterogeneous nuclear ribonucleoprotein L isoform b ... 492 e-139
gi|14165466 polypyrimidine tract-binding protein 1 isoform c [Ho... 174 2e-43
gi|4506243 polypyrimidine tract-binding protein 1 isoform a [Hom... 171 1e-42
gi|14165464 polypyrimidine tract-binding protein 1 isoform b [Ho... 171 2e-42
gi|10863997 polypyrimidine tract binding protein 2 [Homo sapiens] 169 6e-42
gi|38569466 ROD1 regulator of differentiation 1 [Homo sapiens] 153 4e-37
gi|28558998 polypyrimidine tract-binding protein 1 isoform d [Ho... 75 1e-13
gi|228008400 synaptotagmin binding, cytoplasmic RNA interacting ... 40 0.007
gi|228008396 synaptotagmin binding, cytoplasmic RNA interacting ... 40 0.007
gi|228008293 synaptotagmin binding, cytoplasmic RNA interacting ... 40 0.007
gi|228008291 synaptotagmin binding, cytoplasmic RNA interacting ... 40 0.007
gi|22538461 nuclear receptor co-repressor 1 [Homo sapiens] 37 0.035
gi|228008398 synaptotagmin binding, cytoplasmic RNA interacting ... 37 0.059
gi|228008295 synaptotagmin binding, cytoplasmic RNA interacting ... 37 0.059
gi|211904182 DDB1 and CUL4 associated factor 8-like 2 [Homo sapi... 35 0.13
gi|51243065 zinc finger CCHC-type and RNA binding motif 1 [Homo ... 35 0.17
gi|115430237 spectrin, beta, non-erythrocytic 4 isoform sigma1 [... 35 0.23
gi|118582269 splicing factor, arginine/serine-rich 1 isoform 2 [... 34 0.29
gi|5902076 splicing factor, arginine/serine-rich 1 isoform 1 [Ho... 34 0.29
gi|116734698 RNA binding motif protein 23 isoform 3 [Homo sapiens] 33 0.50
gi|116734696 RNA binding motif protein 23 isoform 1 [Homo sapiens] 33 0.50
gi|116734694 RNA binding motif protein 23 isoform 2 [Homo sapiens] 33 0.50
gi|148233596 LPS-responsive vesicle trafficking, beach and ancho... 33 0.50
gi|4885597 sine oculis homeobox homolog 3 [Homo sapiens] 32 1.1
gi|9994185 RNA binding motif protein 7 [Homo sapiens] 32 1.1
gi|48255931 hepatoma-derived growth factor-related protein 2 iso... 32 1.1
gi|14249158 hepatoma-derived growth factor-related protein 2 iso... 32 1.1
>gi|217416379 heterogeneous nuclear ribonucleoprotein L-like isoform
2 [Homo sapiens]
Length = 537
Score = 1095 bits (2831), Expect = 0.0
Identities = 537/537 (100%), Positives = 537/537 (100%)
Query: 1 MLARETYEEDREYESQAKRLKTEEGEIDYSAEEGENRREATPRGGGDGGGGGRSFSQPEA 60
MLARETYEEDREYESQAKRLKTEEGEIDYSAEEGENRREATPRGGGDGGGGGRSFSQPEA
Sbjct: 1 MLARETYEEDREYESQAKRLKTEEGEIDYSAEEGENRREATPRGGGDGGGGGRSFSQPEA 60
Query: 61 GGSHHKVSVSPVVHVRGLCESVVEADLVEALEKFGTICYVMMMPFKRQALVEFENIDSAK 120
GGSHHKVSVSPVVHVRGLCESVVEADLVEALEKFGTICYVMMMPFKRQALVEFENIDSAK
Sbjct: 61 GGSHHKVSVSPVVHVRGLCESVVEADLVEALEKFGTICYVMMMPFKRQALVEFENIDSAK 120
Query: 121 ECVTFAADEPVYIAGQQAFFNYSTSKRITRPGNTDDPSGGNKVLLLSIQNPLYPITVDVL 180
ECVTFAADEPVYIAGQQAFFNYSTSKRITRPGNTDDPSGGNKVLLLSIQNPLYPITVDVL
Sbjct: 121 ECVTFAADEPVYIAGQQAFFNYSTSKRITRPGNTDDPSGGNKVLLLSIQNPLYPITVDVL 180
Query: 181 YTVCNPVGKVQRIVIFKRNGIQAMVEFESVLCAQKAKAALNGADIYAGCCTLKIEYARPT 240
YTVCNPVGKVQRIVIFKRNGIQAMVEFESVLCAQKAKAALNGADIYAGCCTLKIEYARPT
Sbjct: 181 YTVCNPVGKVQRIVIFKRNGIQAMVEFESVLCAQKAKAALNGADIYAGCCTLKIEYARPT 240
Query: 241 RLNVIRNDNDSWDYTKPYLGRRDRGKGRQRQAILGEHPSSFRHDGYGSHGPLLPLPSRYR 300
RLNVIRNDNDSWDYTKPYLGRRDRGKGRQRQAILGEHPSSFRHDGYGSHGPLLPLPSRYR
Sbjct: 241 RLNVIRNDNDSWDYTKPYLGRRDRGKGRQRQAILGEHPSSFRHDGYGSHGPLLPLPSRYR 300
Query: 301 MGSRDTPELVAYPLPQASSSYMHGGNPSGSVVMVSGLHQLKMNCSRVFNLFCLYGNIEKV 360
MGSRDTPELVAYPLPQASSSYMHGGNPSGSVVMVSGLHQLKMNCSRVFNLFCLYGNIEKV
Sbjct: 301 MGSRDTPELVAYPLPQASSSYMHGGNPSGSVVMVSGLHQLKMNCSRVFNLFCLYGNIEKV 360
Query: 361 KFMKTIPGTALVEMGDEYAVERAVTHLNNVKLFGKRLNVCVSKQHSVVPSQIFELEDGTS 420
KFMKTIPGTALVEMGDEYAVERAVTHLNNVKLFGKRLNVCVSKQHSVVPSQIFELEDGTS
Sbjct: 361 KFMKTIPGTALVEMGDEYAVERAVTHLNNVKLFGKRLNVCVSKQHSVVPSQIFELEDGTS 420
Query: 421 SYKDFAMSKNNRFTSAGQASKNIIQPPSCVLHYYNVPLCVTEETFTKLCNDHEVLTFIKY 480
SYKDFAMSKNNRFTSAGQASKNIIQPPSCVLHYYNVPLCVTEETFTKLCNDHEVLTFIKY
Sbjct: 421 SYKDFAMSKNNRFTSAGQASKNIIQPPSCVLHYYNVPLCVTEETFTKLCNDHEVLTFIKY 480
Query: 481 KVFDAKPSAKTLSGLLEWECKTDAVEALTALNHYQIRVPNGSNPYTLKLCFSTSSHL 537
KVFDAKPSAKTLSGLLEWECKTDAVEALTALNHYQIRVPNGSNPYTLKLCFSTSSHL
Sbjct: 481 KVFDAKPSAKTLSGLLEWECKTDAVEALTALNHYQIRVPNGSNPYTLKLCFSTSSHL 537
>gi|20149709 heterogeneous nuclear ribonucleoprotein L-like isoform
1 [Homo sapiens]
Length = 542
Score = 1090 bits (2818), Expect = 0.0
Identities = 534/534 (100%), Positives = 534/534 (100%)
Query: 4 RETYEEDREYESQAKRLKTEEGEIDYSAEEGENRREATPRGGGDGGGGGRSFSQPEAGGS 63
RETYEEDREYESQAKRLKTEEGEIDYSAEEGENRREATPRGGGDGGGGGRSFSQPEAGGS
Sbjct: 9 RETYEEDREYESQAKRLKTEEGEIDYSAEEGENRREATPRGGGDGGGGGRSFSQPEAGGS 68
Query: 64 HHKVSVSPVVHVRGLCESVVEADLVEALEKFGTICYVMMMPFKRQALVEFENIDSAKECV 123
HHKVSVSPVVHVRGLCESVVEADLVEALEKFGTICYVMMMPFKRQALVEFENIDSAKECV
Sbjct: 69 HHKVSVSPVVHVRGLCESVVEADLVEALEKFGTICYVMMMPFKRQALVEFENIDSAKECV 128
Query: 124 TFAADEPVYIAGQQAFFNYSTSKRITRPGNTDDPSGGNKVLLLSIQNPLYPITVDVLYTV 183
TFAADEPVYIAGQQAFFNYSTSKRITRPGNTDDPSGGNKVLLLSIQNPLYPITVDVLYTV
Sbjct: 129 TFAADEPVYIAGQQAFFNYSTSKRITRPGNTDDPSGGNKVLLLSIQNPLYPITVDVLYTV 188
Query: 184 CNPVGKVQRIVIFKRNGIQAMVEFESVLCAQKAKAALNGADIYAGCCTLKIEYARPTRLN 243
CNPVGKVQRIVIFKRNGIQAMVEFESVLCAQKAKAALNGADIYAGCCTLKIEYARPTRLN
Sbjct: 189 CNPVGKVQRIVIFKRNGIQAMVEFESVLCAQKAKAALNGADIYAGCCTLKIEYARPTRLN 248
Query: 244 VIRNDNDSWDYTKPYLGRRDRGKGRQRQAILGEHPSSFRHDGYGSHGPLLPLPSRYRMGS 303
VIRNDNDSWDYTKPYLGRRDRGKGRQRQAILGEHPSSFRHDGYGSHGPLLPLPSRYRMGS
Sbjct: 249 VIRNDNDSWDYTKPYLGRRDRGKGRQRQAILGEHPSSFRHDGYGSHGPLLPLPSRYRMGS 308
Query: 304 RDTPELVAYPLPQASSSYMHGGNPSGSVVMVSGLHQLKMNCSRVFNLFCLYGNIEKVKFM 363
RDTPELVAYPLPQASSSYMHGGNPSGSVVMVSGLHQLKMNCSRVFNLFCLYGNIEKVKFM
Sbjct: 309 RDTPELVAYPLPQASSSYMHGGNPSGSVVMVSGLHQLKMNCSRVFNLFCLYGNIEKVKFM 368
Query: 364 KTIPGTALVEMGDEYAVERAVTHLNNVKLFGKRLNVCVSKQHSVVPSQIFELEDGTSSYK 423
KTIPGTALVEMGDEYAVERAVTHLNNVKLFGKRLNVCVSKQHSVVPSQIFELEDGTSSYK
Sbjct: 369 KTIPGTALVEMGDEYAVERAVTHLNNVKLFGKRLNVCVSKQHSVVPSQIFELEDGTSSYK 428
Query: 424 DFAMSKNNRFTSAGQASKNIIQPPSCVLHYYNVPLCVTEETFTKLCNDHEVLTFIKYKVF 483
DFAMSKNNRFTSAGQASKNIIQPPSCVLHYYNVPLCVTEETFTKLCNDHEVLTFIKYKVF
Sbjct: 429 DFAMSKNNRFTSAGQASKNIIQPPSCVLHYYNVPLCVTEETFTKLCNDHEVLTFIKYKVF 488
Query: 484 DAKPSAKTLSGLLEWECKTDAVEALTALNHYQIRVPNGSNPYTLKLCFSTSSHL 537
DAKPSAKTLSGLLEWECKTDAVEALTALNHYQIRVPNGSNPYTLKLCFSTSSHL
Sbjct: 489 DAKPSAKTLSGLLEWECKTDAVEALTALNHYQIRVPNGSNPYTLKLCFSTSSHL 542
>gi|52632383 heterogeneous nuclear ribonucleoprotein L isoform a
[Homo sapiens]
Length = 589
Score = 557 bits (1435), Expect = e-158
Identities = 297/520 (57%), Positives = 367/520 (70%), Gaps = 30/520 (5%)
Query: 44 GGGDGGGGGRSFSQPEAGGSH----HKVSVSPVVHVRGLCESVVEADLVEALEKFGTICY 99
GGG GGGGG + GG + HK SPVVH+RGL + VVEADLVEAL++FG I Y
Sbjct: 71 GGGGGGGGGAGAAGGGGGGENYDDPHKTPASPVVHIRGLIDGVVEADLVEALQEFGPISY 130
Query: 100 VMMMPFKRQALVEFENIDSAKECVTFAADEPVYIAGQQAFFNYSTSKRITRPGNTDDPSG 159
V++MP KRQALVEFE++ A V +AAD +YIAG AF NYSTS++I+RPG++DD
Sbjct: 131 VVVMPKKRQALVEFEDVLGACNAVNYAADNQIYIAGHPAFVNYSTSQKISRPGDSDDSRS 190
Query: 160 GNKVLLLSIQNPLYPITVDVLYTVCNPVGKVQRIVIFKRNGIQAMVEFESVLCAQKAKAA 219
N VLL +I NP+Y IT DVLYT+CNP G VQRIVIF++NG+QAMVEF+SV AQ+AKA+
Sbjct: 191 VNSVLLFTILNPIYSITTDVLYTICNPCGPVQRIVIFRKNGVQAMVEFDSVQSAQRAKAS 250
Query: 220 LNGADIYAGCCTLKIEYARPTRLNVIRNDNDSWDYTKPYL-GRRDRGKG---RQRQ-AIL 274
LNGADIY+GCCTLKIEYA+PTRLNV +ND D+WDYT P L G+ D G RQRQ +L
Sbjct: 251 LNGADIYSGCCTLKIEYAKPTRLNVFKNDQDTWDYTNPNLSGQGDPGSNPNKRQRQPPLL 310
Query: 275 GEHPSSF--RHDGYGSH------GPLLPLPSRYRMG----------SRDTPELVAYPLPQ 316
G+HP+ + H GY SH GP P RMG SR P+ P P
Sbjct: 311 GDHPAEYGGPHGGYHSHYHDEGYGPPPPHYEGRRMGPPVGGHRRGPSRYGPQYGHPPPPP 370
Query: 317 ASSSYMHGGNPSGSVVMVSGLHQLKMNCSRVFNLFCLYGNIEKVKFMKTIPGTALVEMGD 376
Y G + V+MV GL Q KMNC RVFN+FCLYGN+EKVKFMK+ PG A+VEM D
Sbjct: 371 PPPEY--GPHADSPVLMVYGLDQSKMNCDRVFNVFCLYGNVEKVKFMKSKPGAAMVEMAD 428
Query: 377 EYAVERAVTHLNNVKLFGKRLNVCVSKQHSVVPSQIFELEDGTSSYKDFAMSKNNRFTSA 436
YAV+RA+THLNN +FG++LNVCVSKQ +++P Q + LEDG+ SYKDF+ S+NNRF++
Sbjct: 429 GYAVDRAITHLNNNFMFGQKLNVCVSKQPAIMPGQSYGLEDGSCSYKDFSESRNNRFSTP 488
Query: 437 GQASKNIIQPPSCVLHYYNVPLCVTEETFTKLCNDHEVLTFIKYKVFDAKPSAKTLSGLL 496
QA+KN IQ PS VLH++N PL VTEE F ++C++ V KVF K S ++ SGLL
Sbjct: 489 EQAAKNRIQHPSNVLHFFNAPLEVTEENFFEICDELGVKRPSSVKVFSGK-SERSSSGLL 547
Query: 497 EWECKTDAVEALTALNHYQIRVPNGSNPYTLKLCFSTSSH 536
EWE K+DA+E L LNHYQ++ PNG PYTLKLCFST+ H
Sbjct: 548 EWESKSDALETLGFLNHYQMKNPNGPYPYTLKLCFSTAQH 587
>gi|52632385 heterogeneous nuclear ribonucleoprotein L isoform b
[Homo sapiens]
Length = 456
Score = 492 bits (1266), Expect = e-139
Identities = 262/457 (57%), Positives = 324/457 (70%), Gaps = 26/457 (5%)
Query: 103 MPFKRQALVEFENIDSAKECVTFAADEPVYIAGQQAFFNYSTSKRITRPGNTDDPSGGNK 162
MP KRQALVEFE++ A V +AAD +YIAG AF NYSTS++I+RPG++DD N
Sbjct: 1 MPKKRQALVEFEDVLGACNAVNYAADNQIYIAGHPAFVNYSTSQKISRPGDSDDSRSVNS 60
Query: 163 VLLLSIQNPLYPITVDVLYTVCNPVGKVQRIVIFKRNGIQAMVEFESVLCAQKAKAALNG 222
VLL +I NP+Y IT DVLYT+CNP G VQRIVIF++NG+QAMVEF+SV AQ+AKA+LNG
Sbjct: 61 VLLFTILNPIYSITTDVLYTICNPCGPVQRIVIFRKNGVQAMVEFDSVQSAQRAKASLNG 120
Query: 223 ADIYAGCCTLKIEYARPTRLNVIRNDNDSWDYTKPYL-GRRDRGKG---RQRQ-AILGEH 277
ADIY+GCCTLKIEYA+PTRLNV +ND D+WDYT P L G+ D G RQRQ +LG+H
Sbjct: 121 ADIYSGCCTLKIEYAKPTRLNVFKNDQDTWDYTNPNLSGQGDPGSNPNKRQRQPPLLGDH 180
Query: 278 PSSF--RHDGYGSH------GPLLPLPSRYRMG----------SRDTPELVAYPLPQASS 319
P+ + H GY SH GP P RMG SR P+ P P
Sbjct: 181 PAEYGGPHGGYHSHYHDEGYGPPPPHYEGRRMGPPVGGHRRGPSRYGPQYGHPPPPPPPP 240
Query: 320 SYMHGGNPSGSVVMVSGLHQLKMNCSRVFNLFCLYGNIEKVKFMKTIPGTALVEMGDEYA 379
Y G + V+MV GL Q KMNC RVFN+FCLYGN+EKVKFMK+ PG A+VEM D YA
Sbjct: 241 EY--GPHADSPVLMVYGLDQSKMNCDRVFNVFCLYGNVEKVKFMKSKPGAAMVEMADGYA 298
Query: 380 VERAVTHLNNVKLFGKRLNVCVSKQHSVVPSQIFELEDGTSSYKDFAMSKNNRFTSAGQA 439
V+RA+THLNN +FG++LNVCVSKQ +++P Q + LEDG+ SYKDF+ S+NNRF++ QA
Sbjct: 299 VDRAITHLNNNFMFGQKLNVCVSKQPAIMPGQSYGLEDGSCSYKDFSESRNNRFSTPEQA 358
Query: 440 SKNIIQPPSCVLHYYNVPLCVTEETFTKLCNDHEVLTFIKYKVFDAKPSAKTLSGLLEWE 499
+KN IQ PS VLH++N PL VTEE F ++C++ V KVF K S ++ SGLLEWE
Sbjct: 359 AKNRIQHPSNVLHFFNAPLEVTEENFFEICDELGVKRPSSVKVFSGK-SERSSSGLLEWE 417
Query: 500 CKTDAVEALTALNHYQIRVPNGSNPYTLKLCFSTSSH 536
K+DA+E L LNHYQ++ PNG PYTLKLCFST+ H
Sbjct: 418 SKSDALETLGFLNHYQMKNPNGPYPYTLKLCFSTAQH 454
>gi|14165466 polypyrimidine tract-binding protein 1 isoform c [Homo
sapiens]
Length = 531
Score = 174 bits (441), Expect = 2e-43
Identities = 136/500 (27%), Positives = 235/500 (47%), Gaps = 61/500 (12%)
Query: 70 SPVVHVRGLCESVVEADLVEALEKFGTICYVMMMPFKRQALVEFENIDSAKECVTFAADE 129
S V+H+R L V E +++ FG + ++M+ K QA +E ++A V +
Sbjct: 58 SRVIHIRKLPIDVTEGEVISLGLPFGKVTNLLMLKGKNQAFIEMNTEEAANTMVNYYTSV 117
Query: 130 PVYIAGQQAFFNYSTSKRITRPGNTDDP-------------------------------- 157
+ GQ + +S K + + +
Sbjct: 118 TPVLRGQPIYIQFSNHKELKTDSSPNQARAQAALQAVNSVQSGNLALAASAAAVDAGMAM 177
Query: 158 SGGNKVLLLSIQNPLYPITVDVLYTVCNPVGKVQRIVIF-KRNGIQAMVEFESVLCAQKA 216
+G + VL + ++N YP+T+DVL+ + + G V +I+ F K N QA++++ + AQ A
Sbjct: 178 AGQSPVLRIIVENLFYPVTLDVLHQIFSKFGTVLKIITFTKNNQFQALLQYADPVSAQHA 237
Query: 217 KAALNGADIYAGCCTLKIEYARPTRLNVIRNDNDSWDYTKPYLGRRDRGKGRQRQAILGE 276
K +L+G +IY CCTL+I++++ T LNV N++ S DYT+P D G + ++
Sbjct: 238 KLSLDGQNIYNACCTLRIDFSKLTSLNVKYNNDKSRDYTRP-----DLPSGDSQPSLDQT 292
Query: 277 HPSSFRHDGYGSHGPLLPLPSRYRMGSRDTPELVAYPLPQASSSYMHGGNPSGSVVMVSG 336
++F HG L PL + +A P GN SV++VS
Sbjct: 293 MAAAFGLSVPNVHGALAPLAIPSAAAAAAAAGRIAIP------GLAGAGN---SVLLVSN 343
Query: 337 LHQLKMNCSRVFNLFCLYGNIEKVKFMKTIPGTALVEMGDEYAVERAVTHLNNVKLFGKR 396
L+ ++ +F LF +YG++++VK + ALV+M D + A++HLN KL GK
Sbjct: 344 LNPERVTPQSLFILFGVYGDVQRVKILFNKKENALVQMADGNQAQLAMSHLNGHKLHGKP 403
Query: 397 LNVCVSKQHSVVPSQIFELEDGTSSYKDFAMSKNNRFTSAGQASKNIIQPPSCVLHYYNV 456
+ + +SK +V + + + G + KD+ S +RF G + I PPS LH N+
Sbjct: 404 IRITLSKHQNVQLPREGQEDQGLT--KDYGNSPLHRFKKPGSKNFQNIFPPSATLHLSNI 461
Query: 457 PLCVTEETFTKLCNDH-EVLTFIKYKVFDAKPSAKTLSGLLEWECKTDAVEALTALNHYQ 515
P V+EE L + + V+ K+ D K L++ +AV+AL L+++
Sbjct: 462 PPSVSEEDLKVLFSSNGGVVKGFKFFQKDRK------MALIQMGSVEEAVQALIDLHNHD 515
Query: 516 IRVPNGSNPYTLKLCFSTSS 535
+ G N + L++ FS S+
Sbjct: 516 L----GEN-HHLRVSFSKST 530
>gi|4506243 polypyrimidine tract-binding protein 1 isoform a [Homo
sapiens]
Length = 557
Score = 171 bits (434), Expect = 1e-42
Identities = 137/512 (26%), Positives = 236/512 (46%), Gaps = 59/512 (11%)
Query: 70 SPVVHVRGLCESVVEADLVEALEKFGTICYVMMMPFKRQALVEFENIDSAKECVTFAADE 129
S V+H+R L V E +++ FG + ++M+ K QA +E ++A V +
Sbjct: 58 SRVIHIRKLPIDVTEGEVISLGLPFGKVTNLLMLKGKNQAFIEMNTEEAANTMVNYYTSV 117
Query: 130 PVYIAGQQAFFNYSTSKRITRPGNTDDP-------------------------------- 157
+ GQ + +S K + + +
Sbjct: 118 TPVLRGQPIYIQFSNHKELKTDSSPNQARAQAALQAVNSVQSGNLALAASAAAVDAGMAM 177
Query: 158 SGGNKVLLLSIQNPLYPITVDVLYTVCNPVGKVQRIVIF-KRNGIQAMVEFESVLCAQKA 216
+G + VL + ++N YP+T+DVL+ + + G V +I+ F K N QA++++ + AQ A
Sbjct: 178 AGQSPVLRIIVENLFYPVTLDVLHQIFSKFGTVLKIITFTKNNQFQALLQYADPVSAQHA 237
Query: 217 KAALNGADIYAGCCTLKIEYARPTRLNVIRNDNDSWDYTKPYLGRRDRGKG-RQRQAILG 275
K +L+G +IY CCTL+I++++ T LNV N++ S DYT+P L D Q A
Sbjct: 238 KLSLDGQNIYNACCTLRIDFSKLTSLNVKYNNDKSRDYTRPDLPSGDSQPSLDQTMAAAF 297
Query: 276 EHPSSFRHDGYGSHG--PLLPLPSRYRMGSRDT-PELVAYPLPQASSSYMHGG------- 325
P Y G P +P + + L +P A+++ G
Sbjct: 298 GAPGIISASPYAGAGFPPTFAIPQAAGLSVPNVHGALAPLAIPSAAAAAAAAGRIAIPGL 357
Query: 326 -NPSGSVVMVSGLHQLKMNCSRVFNLFCLYGNIEKVKFMKTIPGTALVEMGDEYAVERAV 384
SV++VS L+ ++ +F LF +YG++++VK + ALV+M D + A+
Sbjct: 358 AGAGNSVLLVSNLNPERVTPQSLFILFGVYGDVQRVKILFNKKENALVQMADGNQAQLAM 417
Query: 385 THLNNVKLFGKRLNVCVSKQHSVVPSQIFELEDGTSSYKDFAMSKNNRFTSAGQASKNII 444
+HLN KL GK + + +SK +V + + + G + KD+ S +RF G + I
Sbjct: 418 SHLNGHKLHGKPIRITLSKHQNVQLPREGQEDQGLT--KDYGNSPLHRFKKPGSKNFQNI 475
Query: 445 QPPSCVLHYYNVPLCVTEETFTKLCNDH-EVLTFIKYKVFDAKPSAKTLSGLLEWECKTD 503
PPS LH N+P V+EE L + + V+ K+ D K L++ +
Sbjct: 476 FPPSATLHLSNIPPSVSEEDLKVLFSSNGGVVKGFKFFQKDRK------MALIQMGSVEE 529
Query: 504 AVEALTALNHYQIRVPNGSNPYTLKLCFSTSS 535
AV+AL L+++ + G N + L++ FS S+
Sbjct: 530 AVQALIDLHNHDL----GEN-HHLRVSFSKST 556
>gi|14165464 polypyrimidine tract-binding protein 1 isoform b [Homo
sapiens]
Length = 550
Score = 171 bits (433), Expect = 2e-42
Identities = 135/509 (26%), Positives = 238/509 (46%), Gaps = 60/509 (11%)
Query: 70 SPVVHVRGLCESVVEADLVEALEKFGTICYVMMMPFKRQALVEFENIDSAKECVTFAADE 129
S V+H+R L V E +++ FG + ++M+ K QA +E ++A V +
Sbjct: 58 SRVIHIRKLPIDVTEGEVISLGLPFGKVTNLLMLKGKNQAFIEMNTEEAANTMVNYYTSV 117
Query: 130 PVYIAGQQAFFNYSTSKRITRPGNTDDP-------------------------------- 157
+ GQ + +S K + + +
Sbjct: 118 TPVLRGQPIYIQFSNHKELKTDSSPNQARAQAALQAVNSVQSGNLALAASAAAVDAGMAM 177
Query: 158 SGGNKVLLLSIQNPLYPITVDVLYTVCNPVGKVQRIVIF-KRNGIQAMVEFESVLCAQKA 216
+G + VL + ++N YP+T+DVL+ + + G V +I+ F K N QA++++ + AQ A
Sbjct: 178 AGQSPVLRIIVENLFYPVTLDVLHQIFSKFGTVLKIITFTKNNQFQALLQYADPVSAQHA 237
Query: 217 KAALNGADIYAGCCTLKIEYARPTRLNVIRNDNDSWDYTKPYLGRRDRGKGRQRQAILGE 276
K +L+G +IY CCTL+I++++ T LNV N++ S DYT+P L D + Q +
Sbjct: 238 KLSLDGQNIYNACCTLRIDFSKLTSLNVKYNNDKSRDYTRPDLPSGD-SQPSLDQTMAAA 296
Query: 277 HPSSFRHDGYGSHGPLLPLPSRYRMGSRDT-PELVAYPLPQASSSYMHGG--------NP 327
S + G+ P +P + + L +P A+++ G
Sbjct: 297 FASPYAGAGF---PPTFAIPQAAGLSVPNVHGALAPLAIPSAAAAAAAAGRIAIPGLAGA 353
Query: 328 SGSVVMVSGLHQLKMNCSRVFNLFCLYGNIEKVKFMKTIPGTALVEMGDEYAVERAVTHL 387
SV++VS L+ ++ +F LF +YG++++VK + ALV+M D + A++HL
Sbjct: 354 GNSVLLVSNLNPERVTPQSLFILFGVYGDVQRVKILFNKKENALVQMADGNQAQLAMSHL 413
Query: 388 NNVKLFGKRLNVCVSKQHSVVPSQIFELEDGTSSYKDFAMSKNNRFTSAGQASKNIIQPP 447
N KL GK + + +SK +V + + + G + KD+ S +RF G + I PP
Sbjct: 414 NGHKLHGKPIRITLSKHQNVQLPREGQEDQGLT--KDYGNSPLHRFKKPGSKNFQNIFPP 471
Query: 448 SCVLHYYNVPLCVTEETFTKLCNDH-EVLTFIKYKVFDAKPSAKTLSGLLEWECKTDAVE 506
S LH N+P V+EE L + + V+ K+ D K L++ +AV+
Sbjct: 472 SATLHLSNIPPSVSEEDLKVLFSSNGGVVKGFKFFQKDRK------MALIQMGSVEEAVQ 525
Query: 507 ALTALNHYQIRVPNGSNPYTLKLCFSTSS 535
AL L+++ + G N + L++ FS S+
Sbjct: 526 ALIDLHNHDL----GEN-HHLRVSFSKST 549
>gi|10863997 polypyrimidine tract binding protein 2 [Homo sapiens]
Length = 531
Score = 169 bits (428), Expect = 6e-42
Identities = 141/498 (28%), Positives = 233/498 (46%), Gaps = 57/498 (11%)
Query: 70 SPVVHVRGLCESVVEADLVEALEKFGTICYVMMMPFKRQALVEFENIDSAKECVTFAADE 129
S V+H+R L V E +++ FG + ++M+ K QA +E ++A V + +
Sbjct: 58 SRVLHIRKLPGEVTETEVIALGLPFGKVTNILMLKGKNQAFLELATEEAAITMVNYYSAV 117
Query: 130 PVYIAGQQAFFNYSTSKR-----------------ITRPGNTDDPSGG------------ 160
++ Q + YS K +T + P G
Sbjct: 118 TPHLRNQPIYIQYSNHKELKTDNTLNQRAQAVLQAVTAVQTANTPLSGTTVSESAVTPAQ 177
Query: 161 NKVLLLSIQNPLYPITVDVLYTVCNPVGKVQRIVIF-KRNGIQAMVEFESVLCAQKAKAA 219
+ VL + I N YP+T+DVL+ + + G V +I+ F K N QA++++ + AQ+AK A
Sbjct: 178 SPVLRIIIDNMYYPVTLDVLHQIFSKFGAVLKIITFTKNNQFQALLQYGDPVNAQQAKLA 237
Query: 220 LNGADIYAGCCTLKIEYARPTRLNVIRNDNDSWDYTKPYLGRRDRGKGRQRQAILGEHPS 279
L+G +IY CCTL+I++++ LNV N++ S DYT+P D G + A+ +
Sbjct: 238 LDGQNIYNACCTLRIDFSKLVNLNVKYNNDKSRDYTRP-----DLPSGDGQPALDPAIAA 292
Query: 280 SFRHDG--YGSHGPLLPLPSRYRMGSRDTPELVAYPLPQASSSYMHGGNPSGSVVMVSGL 337
+F + G L PL + +P S+ GGN +V++VS L
Sbjct: 293 AFAKETSLLAVPGALSPLAIPNAAAAAAAAAAGRVGMPGVSA----GGN---TVLLVSNL 345
Query: 338 HQLKMNCSRVFNLFCLYGNIEKVKFMKTIPGTALVEMGDEYAVERAVTHLNNVKLFGKRL 397
++ + +F LF +YG++++VK + +AL++M D + A+ HLN K++GK +
Sbjct: 346 NEEMVTPQSLFTLFGVYGDVQRVKILYNKKDSALIQMADGNQSQLAMNHLNGQKMYGKII 405
Query: 398 NVCVSKQHSVVPSQIFELEDGTSSYKDFAMSKNNRFTSAGQASKNIIQPPSCVLHYYNVP 457
V +SK +V + E D KDF S +RF G + I PPS LH N+P
Sbjct: 406 RVTLSKHQTVQLPR--EGLDDQGLTKDFGNSPLHRFKKPGSKNFQNIFPPSATLHLSNIP 463
Query: 458 LCVTEETFTKLCNDHEVLTFIKYKVFDAKPSAKTLSGLLEWECKTDAVEALTALNHYQIR 517
V EE L + T +K F A LL+ +A++AL L++Y +
Sbjct: 464 PSVAEEDLRTLFANTGG-TVKAFKFFQDHKMA-----LLQMATVEEAIQALIDLHNYNL- 516
Query: 518 VPNGSNPYTLKLCFSTSS 535
G N + L++ FS S+
Sbjct: 517 ---GEN-HHLRVSFSKST 530
>gi|38569466 ROD1 regulator of differentiation 1 [Homo sapiens]
Length = 552
Score = 153 bits (386), Expect = 4e-37
Identities = 135/509 (26%), Positives = 235/509 (46%), Gaps = 54/509 (10%)
Query: 68 SVSPVVHVRGLCESVVEADLVEALEKFGTICYVMMMPFKRQALVEFENIDSAKECVTFAA 127
S S V+H+R + V EA+++ FG + ++M+ K QA +E + ++A V +
Sbjct: 56 SPSRVLHLRKIPCDVTEAEIISLGLPFGKVTNLLMLKGKSQAFLEMASEEAAVTMVNYYT 115
Query: 128 DEPVYIAGQQAFFNYSTSKRI--------------------TRPGN---TDDPS------ 158
++ Q + YS + + + G+ + PS
Sbjct: 116 PITPHLRSQPVYIQYSNHRELKTDNLPNQARAQAALQAVSAVQSGSLALSGGPSNEGTVL 175
Query: 159 -GGNKVLLLSIQNPLYPITVDVLYTVCNPVGKVQRIVIF-KRNGIQAMVEFESVLCAQKA 216
G + VL + I+N YP+T++VL+ + + G V +I+ F K N QA++++ + A A
Sbjct: 176 PGQSPVLRIIIENLFYPVTLEVLHQIFSKFGTVLKIITFTKNNQFQALLQYADPVNAHYA 235
Query: 217 KAALNGADIYAGCCTLKIEYARPTRLNVIRNDNDSWDYTKPYLGRRDRGKGRQ---RQAI 273
K AL+G +IY CCTL+I++++ T LNV N++ S D+T+ L D + A
Sbjct: 236 KMALDGQNIYNACCTLRIDFSKLTSLNVKYNNDKSRDFTRLDLPTGDGQPSLEPPMAAAF 295
Query: 274 LGEHPSSFRHDGYGSHGPLLPLPSRYRMGSRDTPELVAYPLPQASSSYM-------HGGN 326
S + G P + P + P + PL SS+ G
Sbjct: 296 GAPGIISSPYAGAAGFAPAIGFPQATGLSVPAVPGALG-PLTITSSAVTGRMAIPGASGI 354
Query: 327 PSGSVVMVSGLHQLKMNCSRVFNLFCLYGNIEKVKFMKTIPGTALVEMGDEYAVERAVTH 386
P SV++V+ L+ + +F LF +YG++ +VK M ALV+M D + A+ H
Sbjct: 355 PGNSVLLVTNLNPDLITPHGLFILFGVYGDVHRVKIMFNKKENALVQMADANQAQLAMNH 414
Query: 387 LNNVKLFGKRLNVCVSKQHSVVPSQIFELEDGTSSYKDFAMSKNNRFTSAGQASKNIIQP 446
L+ +L+GK L +SK +V + + + G + KDF+ S +RF G + I P
Sbjct: 415 LSGQRLYGKVLRATLSKHQAVQLPREGQEDQGLT--KDFSNSPLHRFKKPGSKNFQNIFP 472
Query: 447 PSCVLHYYNVPLCVTEETFTKLCNDHEVLTFIKYKVFDAKPSAKTLSGLLEWECKTDAVE 506
PS LH N+P VT + L + K F + ++ L++ +A++
Sbjct: 473 PSATLHLSNIPPSVTVDDLKNLF----IEAGCSVKAFKFFQKDRKMA-LIQLGSVEEAIQ 527
Query: 507 ALTALNHYQIRVPNGSNPYTLKLCFSTSS 535
AL L+++ + G N + L++ FS S+
Sbjct: 528 ALIELHNHDL----GEN-HHLRVSFSKST 551
>gi|28558998 polypyrimidine tract-binding protein 1 isoform d [Homo
sapiens]
Length = 197
Score = 75.5 bits (184), Expect = 1e-13
Identities = 58/190 (30%), Positives = 98/190 (51%), Gaps = 14/190 (7%)
Query: 347 VFNLFCLYGNIEKVKFMKTIPGTALVEMGDEYAVERAVTHLNNVKLFGKRLNVCVSKQHS 406
+F LF +YG++++VK + ALV+M D + A++HLN KL GK + + +SK +
Sbjct: 20 LFILFGVYGDVQRVKILFNKKENALVQMADGNQAQLAMSHLNGHKLHGKPIRITLSKHQN 79
Query: 407 VVPSQIFELEDGTSSYKDFAMSKNNRFTSAGQASKNIIQPPSCVLHYYNVPLCVTEETFT 466
V + + + G + KD+ S +RF G + I PPS LH N+P V+EE
Sbjct: 80 VQLPREGQEDQGLT--KDYGNSPLHRFKKPGSKNFQNIFPPSATLHLSNIPPSVSEEDLK 137
Query: 467 KLCNDH-EVLTFIKYKVFDAKPSAKTLSGLLEWECKTDAVEALTALNHYQIRVPNGSNPY 525
L + + V+ K+ D K L++ +AV+AL L+++ + G N +
Sbjct: 138 VLFSSNGGVVKGFKFFQKDRK------MALIQMGSVEEAVQALIDLHNHDL----GEN-H 186
Query: 526 TLKLCFSTSS 535
L++ FS S+
Sbjct: 187 HLRVSFSKST 196
>gi|228008400 synaptotagmin binding, cytoplasmic RNA interacting
protein isoform 6 [Homo sapiens]
Length = 562
Score = 39.7 bits (91), Expect = 0.007
Identities = 35/147 (23%), Positives = 65/147 (44%), Gaps = 16/147 (10%)
Query: 151 PGNTDDPSGGNKVLLLSIQNPLYPITVDVLYTVCNPVGKVQRIVIFKRNGIQAMVEFESV 210
P DP KV +L ++N +T ++L + GK++R+ K+ A + F+
Sbjct: 325 PIEDPDPEVMAKVKVLFVRNLANTVTEEILEKAFSQFGKLERV---KKLKDYAFIHFDER 381
Query: 211 LCAQKAKAALNGADIYAGCCTLKIEYARP---------TRLNVIRND--NDSWDYTKPYL 259
A KA +NG D+ ++I +A+P + +N +D + Y P++
Sbjct: 382 DGAVKAMEEMNGKDLEGE--NIEIVFAKPPDQKRKERKAQRQAAKNQMYDDYYYYGPPHM 439
Query: 260 GRRDRGKGRQRQAILGEHPSSFRHDGY 286
RG+GR + G P + ++ Y
Sbjct: 440 PPPTRGRGRGGRGGYGYPPDYYGYEDY 466
>gi|228008396 synaptotagmin binding, cytoplasmic RNA interacting
protein isoform 2 [Homo sapiens]
Length = 464
Score = 39.7 bits (91), Expect = 0.007
Identities = 35/147 (23%), Positives = 65/147 (44%), Gaps = 16/147 (10%)
Query: 151 PGNTDDPSGGNKVLLLSIQNPLYPITVDVLYTVCNPVGKVQRIVIFKRNGIQAMVEFESV 210
P DP KV +L ++N +T ++L + GK++R+ K+ A + F+
Sbjct: 227 PIEDPDPEVMAKVKVLFVRNLANTVTEEILEKAFSQFGKLERV---KKLKDYAFIHFDER 283
Query: 211 LCAQKAKAALNGADIYAGCCTLKIEYARP---------TRLNVIRND--NDSWDYTKPYL 259
A KA +NG D+ ++I +A+P + +N +D + Y P++
Sbjct: 284 DGAVKAMEEMNGKDLEGE--NIEIVFAKPPDQKRKERKAQRQAAKNQMYDDYYYYGPPHM 341
Query: 260 GRRDRGKGRQRQAILGEHPSSFRHDGY 286
RG+GR + G P + ++ Y
Sbjct: 342 PPPTRGRGRGGRGGYGYPPDYYGYEDY 368
>gi|228008293 synaptotagmin binding, cytoplasmic RNA interacting
protein isoform 5 [Homo sapiens]
Length = 561
Score = 39.7 bits (91), Expect = 0.007
Identities = 35/147 (23%), Positives = 65/147 (44%), Gaps = 16/147 (10%)
Query: 151 PGNTDDPSGGNKVLLLSIQNPLYPITVDVLYTVCNPVGKVQRIVIFKRNGIQAMVEFESV 210
P DP KV +L ++N +T ++L + GK++R+ K+ A + F+
Sbjct: 325 PIEDPDPEVMAKVKVLFVRNLANTVTEEILEKAFSQFGKLERV---KKLKDYAFIHFDER 381
Query: 211 LCAQKAKAALNGADIYAGCCTLKIEYARP---------TRLNVIRND--NDSWDYTKPYL 259
A KA +NG D+ ++I +A+P + +N +D + Y P++
Sbjct: 382 DGAVKAMEEMNGKDLEGE--NIEIVFAKPPDQKRKERKAQRQAAKNQMYDDYYYYGPPHM 439
Query: 260 GRRDRGKGRQRQAILGEHPSSFRHDGY 286
RG+GR + G P + ++ Y
Sbjct: 440 PPPTRGRGRGGRGGYGYPPDYYGYEDY 466
>gi|228008291 synaptotagmin binding, cytoplasmic RNA interacting
protein isoform 1 [Homo sapiens]
Length = 623
Score = 39.7 bits (91), Expect = 0.007
Identities = 35/147 (23%), Positives = 65/147 (44%), Gaps = 16/147 (10%)
Query: 151 PGNTDDPSGGNKVLLLSIQNPLYPITVDVLYTVCNPVGKVQRIVIFKRNGIQAMVEFESV 210
P DP KV +L ++N +T ++L + GK++R+ K+ A + F+
Sbjct: 325 PIEDPDPEVMAKVKVLFVRNLANTVTEEILEKAFSQFGKLERV---KKLKDYAFIHFDER 381
Query: 211 LCAQKAKAALNGADIYAGCCTLKIEYARP---------TRLNVIRND--NDSWDYTKPYL 259
A KA +NG D+ ++I +A+P + +N +D + Y P++
Sbjct: 382 DGAVKAMEEMNGKDLEGE--NIEIVFAKPPDQKRKERKAQRQAAKNQMYDDYYYYGPPHM 439
Query: 260 GRRDRGKGRQRQAILGEHPSSFRHDGY 286
RG+GR + G P + ++ Y
Sbjct: 440 PPPTRGRGRGGRGGYGYPPDYYGYEDY 466
>gi|22538461 nuclear receptor co-repressor 1 [Homo sapiens]
Length = 2440
Score = 37.4 bits (85), Expect = 0.035
Identities = 18/46 (39%), Positives = 27/46 (58%)
Query: 8 EEDREYESQAKRLKTEEGEIDYSAEEGENRREATPRGGGDGGGGGR 53
EE+++ + +K E+ +ID +AEE E R +ATPRG GR
Sbjct: 535 EEEKDEKEDSKENTKEKDKIDGTAEETEEREQATPRGRKTANSQGR 580
>gi|228008398 synaptotagmin binding, cytoplasmic RNA interacting
protein isoform 3 [Homo sapiens]
Length = 527
Score = 36.6 bits (83), Expect = 0.059
Identities = 32/143 (22%), Positives = 64/143 (44%), Gaps = 16/143 (11%)
Query: 155 DDPSGGNKVLLLSIQNPLYPITVDVLYTVCNPVGKVQRIVIFKRNGIQAMVEFESVLCAQ 214
+D +V +L ++N +T ++L + GK++R+ K+ A + F+ A
Sbjct: 294 EDHKTAAQVKVLFVRNLANTVTEEILEKAFSQFGKLERV---KKLKDYAFIHFDERDGAV 350
Query: 215 KAKAALNGADIYAGCCTLKIEYARP---------TRLNVIRND--NDSWDYTKPYLGRRD 263
KA +NG D+ ++I +A+P + +N +D + Y P++
Sbjct: 351 KAMEEMNGKDLEGE--NIEIVFAKPPDQKRKERKAQRQAAKNQMYDDYYYYGPPHMPPPT 408
Query: 264 RGKGRQRQAILGEHPSSFRHDGY 286
RG+GR + G P + ++ Y
Sbjct: 409 RGRGRGGRGGYGYPPDYYGYEDY 431
>gi|228008295 synaptotagmin binding, cytoplasmic RNA interacting
protein isoform 4 [Homo sapiens]
Length = 588
Score = 36.6 bits (83), Expect = 0.059
Identities = 32/143 (22%), Positives = 64/143 (44%), Gaps = 16/143 (11%)
Query: 155 DDPSGGNKVLLLSIQNPLYPITVDVLYTVCNPVGKVQRIVIFKRNGIQAMVEFESVLCAQ 214
+D +V +L ++N +T ++L + GK++R+ K+ A + F+ A
Sbjct: 294 EDHKTAAQVKVLFVRNLANTVTEEILEKAFSQFGKLERV---KKLKDYAFIHFDERDGAV 350
Query: 215 KAKAALNGADIYAGCCTLKIEYARP---------TRLNVIRND--NDSWDYTKPYLGRRD 263
KA +NG D+ ++I +A+P + +N +D + Y P++
Sbjct: 351 KAMEEMNGKDLEGE--NIEIVFAKPPDQKRKERKAQRQAAKNQMYDDYYYYGPPHMPPPT 408
Query: 264 RGKGRQRQAILGEHPSSFRHDGY 286
RG+GR + G P + ++ Y
Sbjct: 409 RGRGRGGRGGYGYPPDYYGYEDY 431
>gi|211904182 DDB1 and CUL4 associated factor 8-like 2 [Homo
sapiens]
Length = 631
Score = 35.4 bits (80), Expect = 0.13
Identities = 18/47 (38%), Positives = 22/47 (46%)
Query: 5 ETYEEDREYESQAKRLKTEEGEIDYSAEEGENRREATPRGGGDGGGG 51
E EED E + + + EE E + EE E E PR G G GG
Sbjct: 112 EREEEDEEIQEEGGEEEEEEEEEEEEEEEEEEEEEEQPRAGPQGSGG 158
>gi|51243065 zinc finger CCHC-type and RNA binding motif 1 [Homo
sapiens]
Length = 217
Score = 35.0 bits (79), Expect = 0.17
Identities = 25/87 (28%), Positives = 41/87 (47%), Gaps = 7/87 (8%)
Query: 322 MHGG-NPSGSVVMVSGLHQLKMNCSRVFNLFCLYGNIEKVKFMKT-----IPGTALVEMG 375
M GG PS S V VS L + + ++ +F YG + KV MK G A +
Sbjct: 1 MSGGLAPSKSTVYVSNL-PFSLTNNDLYRIFSKYGKVVKVTIMKDKDTRKSKGVAFILFL 59
Query: 376 DEYAVERAVTHLNNVKLFGKRLNVCVS 402
D+ + + +NN +LFG+ + ++
Sbjct: 60 DKDSAQNCTRAINNKQLFGRVIKASIA 86
>gi|115430237 spectrin, beta, non-erythrocytic 4 isoform sigma1 [Homo
sapiens]
Length = 2564
Score = 34.7 bits (78), Expect = 0.23
Identities = 16/27 (59%), Positives = 17/27 (62%)
Query: 37 RREATPRGGGDGGGGGRSFSQPEAGGS 63
RR PR GG+GGG RS S P GGS
Sbjct: 2381 RRRPRPREGGEGGGSRRSRSAPAQGGS 2407
>gi|118582269 splicing factor, arginine/serine-rich 1 isoform 2
[Homo sapiens]
Length = 201
Score = 34.3 bits (77), Expect = 0.29
Identities = 24/61 (39%), Positives = 31/61 (50%), Gaps = 8/61 (13%)
Query: 41 TPRGGGDGGGGG--RSFSQPEAGGSHHKVSVSPVVHVRGLCESVVEADLVEALEKFGTIC 98
T RGGG GGGGG R P + S ++V VS GL S DL + + + G +C
Sbjct: 95 TGRGGGGGGGGGAPRGRYGPPSRRSENRVVVS------GLPPSGSWQDLKDHMREAGDVC 148
Query: 99 Y 99
Y
Sbjct: 149 Y 149
>gi|5902076 splicing factor, arginine/serine-rich 1 isoform 1 [Homo
sapiens]
Length = 248
Score = 34.3 bits (77), Expect = 0.29
Identities = 24/61 (39%), Positives = 31/61 (50%), Gaps = 8/61 (13%)
Query: 41 TPRGGGDGGGGG--RSFSQPEAGGSHHKVSVSPVVHVRGLCESVVEADLVEALEKFGTIC 98
T RGGG GGGGG R P + S ++V VS GL S DL + + + G +C
Sbjct: 95 TGRGGGGGGGGGAPRGRYGPPSRRSENRVVVS------GLPPSGSWQDLKDHMREAGDVC 148
Query: 99 Y 99
Y
Sbjct: 149 Y 149
>gi|116734698 RNA binding motif protein 23 isoform 3 [Homo sapiens]
Length = 405
Score = 33.5 bits (75), Expect = 0.50
Identities = 32/126 (25%), Positives = 50/126 (39%), Gaps = 15/126 (11%)
Query: 109 ALVEFENIDSAKECVTFAADE----PVYIAGQQAFFNYSTSKRITRPGNTDDPSGGNKVL 164
A VEF I S + P+ + QA N R+ N G +
Sbjct: 176 AYVEFCEIQSVPLAIGLTGQRLLGVPIIVQASQAEKN-----RLAAMANNLQKGNGGPMR 230
Query: 165 LLSIQNPLYPITVDVLYTVCNPVGKVQRIVIFK-----RNGIQAMVEFESVLCAQKAKAA 219
L + + + IT D+L + P GK+ IV+ K R+ + F CA++A
Sbjct: 231 LY-VGSLHFNITEDMLRGIFEPFGKIDNIVLMKDSDTGRSKGYGFITFSDSECARRALEQ 289
Query: 220 LNGADI 225
LNG ++
Sbjct: 290 LNGFEL 295
>gi|116734696 RNA binding motif protein 23 isoform 1 [Homo sapiens]
Length = 439
Score = 33.5 bits (75), Expect = 0.50
Identities = 32/126 (25%), Positives = 50/126 (39%), Gaps = 15/126 (11%)
Query: 109 ALVEFENIDSAKECVTFAADE----PVYIAGQQAFFNYSTSKRITRPGNTDDPSGGNKVL 164
A VEF I S + P+ + QA N R+ N G +
Sbjct: 210 AYVEFCEIQSVPLAIGLTGQRLLGVPIIVQASQAEKN-----RLAAMANNLQKGNGGPMR 264
Query: 165 LLSIQNPLYPITVDVLYTVCNPVGKVQRIVIFK-----RNGIQAMVEFESVLCAQKAKAA 219
L + + + IT D+L + P GK+ IV+ K R+ + F CA++A
Sbjct: 265 LY-VGSLHFNITEDMLRGIFEPFGKIDNIVLMKDSDTGRSKGYGFITFSDSECARRALEQ 323
Query: 220 LNGADI 225
LNG ++
Sbjct: 324 LNGFEL 329
>gi|116734694 RNA binding motif protein 23 isoform 2 [Homo sapiens]
Length = 423
Score = 33.5 bits (75), Expect = 0.50
Identities = 32/126 (25%), Positives = 50/126 (39%), Gaps = 15/126 (11%)
Query: 109 ALVEFENIDSAKECVTFAADE----PVYIAGQQAFFNYSTSKRITRPGNTDDPSGGNKVL 164
A VEF I S + P+ + QA N R+ N G +
Sbjct: 194 AYVEFCEIQSVPLAIGLTGQRLLGVPIIVQASQAEKN-----RLAAMANNLQKGNGGPMR 248
Query: 165 LLSIQNPLYPITVDVLYTVCNPVGKVQRIVIFK-----RNGIQAMVEFESVLCAQKAKAA 219
L + + + IT D+L + P GK+ IV+ K R+ + F CA++A
Sbjct: 249 LY-VGSLHFNITEDMLRGIFEPFGKIDNIVLMKDSDTGRSKGYGFITFSDSECARRALEQ 307
Query: 220 LNGADI 225
LNG ++
Sbjct: 308 LNGFEL 313
>gi|148233596 LPS-responsive vesicle trafficking, beach and anchor
containing [Homo sapiens]
Length = 2863
Score = 33.5 bits (75), Expect = 0.50
Identities = 17/44 (38%), Positives = 25/44 (56%), Gaps = 4/44 (9%)
Query: 35 ENRREATPRGGGDGGGGGRSFSQPEAGGSHHKVSVSPVVHVRGL 78
+NR + P G DGGGGGR + E G +S+ P + +RG+
Sbjct: 5 DNRVPSPPPTGDDGGGGGREETPTEGGA----LSLKPGLPIRGI 44
>gi|4885597 sine oculis homeobox homolog 3 [Homo sapiens]
Length = 332
Score = 32.3 bits (72), Expect = 1.1
Identities = 26/84 (30%), Positives = 42/84 (50%), Gaps = 5/84 (5%)
Query: 44 GGGDGGGGGRSFSQPEAGGSHH--KVSVSPVVHVRGLCESVVEADLVEALEKFGTICYVM 101
GG GGGGG S + PE ++ SP V +CE++ E +E L +F + +
Sbjct: 60 GGAGGGGGGGSRAPPEELSMFQLPTLNFSP-EQVASVCETLEETGDIERLGRF--LWSLP 116
Query: 102 MMPFKRQALVEFENIDSAKECVTF 125
+ P +A+ + E+I A+ V F
Sbjct: 117 VAPGACEAINKHESILRARAVVAF 140
>gi|9994185 RNA binding motif protein 7 [Homo sapiens]
Length = 266
Score = 32.3 bits (72), Expect = 1.1
Identities = 31/115 (26%), Positives = 47/115 (40%), Gaps = 8/115 (6%)
Query: 339 QLKMNCSRVFNLFCLYGNIEKVKFMKTIPGT----ALVEMGDEYAVERAVTHLNNVKLFG 394
+ K+ +F LF G + KVK K G A V E +V A+ LN +KL+G
Sbjct: 18 ETKVTEELLFELFHQAGPVIKVKIPKDKDGKPKQFAFVNFKHEVSVPYAMNLLNGIKLYG 77
Query: 395 KRLNVCVSKQHSVVPSQIF----ELEDGTSSYKDFAMSKNNRFTSAGQASKNIIQ 445
+ + + S P + + G SS + S+ R +S IIQ
Sbjct: 78 RPIKIQFRSGSSHAPQDVSLSYPQHHVGNSSPTSTSPSRYERTMDNMTSSAQIIQ 132
>gi|48255931 hepatoma-derived growth factor-related protein 2
isoform 1 [Homo sapiens]
Length = 671
Score = 32.3 bits (72), Expect = 1.1
Identities = 18/44 (40%), Positives = 23/44 (52%), Gaps = 6/44 (13%)
Query: 11 REYESQAKRLKTEEGEIDYSAEEGENRREATPRGGGDGGGGGRS 54
RE E + +RL+ +E EE E RRE RG + G GG S
Sbjct: 333 REQEEELRRLREQE------KEEKERRRERADRGEAERGSGGSS 370
>gi|14249158 hepatoma-derived growth factor-related protein 2
isoform 2 [Homo sapiens]
Length = 670
Score = 32.3 bits (72), Expect = 1.1
Identities = 18/44 (40%), Positives = 23/44 (52%), Gaps = 6/44 (13%)
Query: 11 REYESQAKRLKTEEGEIDYSAEEGENRREATPRGGGDGGGGGRS 54
RE E + +RL+ +E EE E RRE RG + G GG S
Sbjct: 333 REQEEELRRLREQE------KEEKERRRERADRGEAERGSGGSS 370
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.318 0.134 0.400
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 21,496,369
Number of Sequences: 37866
Number of extensions: 1032355
Number of successful extensions: 5758
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 38
Number of HSP's successfully gapped in prelim test: 51
Number of HSP's that attempted gapping in prelim test: 5443
Number of HSP's gapped (non-prelim): 248
length of query: 537
length of database: 18,247,518
effective HSP length: 107
effective length of query: 430
effective length of database: 14,195,856
effective search space: 6104218080
effective search space used: 6104218080
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 64 (29.3 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.