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Search of human proteins with 215272334
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|215272334 sodium channel, voltage-gated, type IV, beta
isoform 3 [Homo sapiens]
(118 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|28372555 sodium channel, voltage-gated, type IV, beta isoform... 232 4e-62
gi|215272334 sodium channel, voltage-gated, type IV, beta isofor... 232 4e-62
gi|215272332 sodium channel, voltage-gated, type IV, beta isofor... 141 1e-34
gi|4759066 sodium channel, voltage-gated, type II, beta [Homo sa... 56 7e-09
gi|4505243 myelin protein zero [Homo sapiens] 49 6e-07
gi|4506357 myelin protein zero-like 1 isoform a [Homo sapiens] 42 1e-04
gi|171460997 CD226 molecule precursor [Homo sapiens] 41 2e-04
gi|46358426 myelin protein zero-like 1 isoform b [Homo sapiens] 37 0.003
gi|21686977 cell adhesion molecule 4 [Homo sapiens] 37 0.003
gi|13186249 fibroblast growth factor receptor 1 isoform 9 precur... 37 0.004
gi|13186236 fibroblast growth factor receptor 1 isoform 4 precur... 37 0.004
gi|13186234 fibroblast growth factor receptor 1 isoform 3 precur... 37 0.004
gi|13186251 fibroblast growth factor receptor 1 isoform 2 precur... 37 0.004
gi|105990522 fibroblast growth factor receptor 1 isoform 1 precu... 37 0.004
gi|148664224 adhesion molecule, interacts with CXADR antigen 1 i... 37 0.004
gi|148664207 adhesion molecule, interacts with CXADR antigen 1 i... 37 0.004
gi|21536337 myelin protein zero-like 2 precursor [Homo sapiens] 36 0.007
gi|5032247 myelin protein zero-like 2 precursor [Homo sapiens] 36 0.007
gi|40255157 leucine-rich repeats and immunoglobulin-like domains... 34 0.022
gi|209862903 leucine-rich repeats and immunoglobulin-like domain... 34 0.022
gi|62339432 platelet receptor Gi24 [Homo sapiens] 34 0.028
gi|11225607 interleukin 1 receptor accessory protein-like 2 [Hom... 34 0.028
gi|222144233 fibroblast growth factor receptor 2 isoform 4 precu... 33 0.037
gi|7657232 interleukin 1 receptor accessory protein-like 1 precu... 33 0.048
gi|8393638 F11 receptor precursor [Homo sapiens] 33 0.063
gi|148664211 immunoglobulin superfamily, member 4D isoform 2 [Ho... 32 0.082
gi|45505167 immunoglobulin superfamily, member 1 isoform 1 [Homo... 32 0.082
gi|56788393 myelin oligodendrocyte glycoprotein isoform beta5 pr... 32 0.082
gi|56788391 myelin oligodendrocyte glycoprotein isoform beta2 pr... 32 0.082
gi|56788389 myelin oligodendrocyte glycoprotein isoform alpha3 p... 32 0.082
>gi|28372555 sodium channel, voltage-gated, type IV, beta isoform 1
precursor [Homo sapiens]
Length = 228
Score = 232 bits (592), Expect = 4e-62
Identities = 118/118 (100%), Positives = 118/118 (100%)
Query: 1 MNNISIVLRDLEFSDTGKYTCHVKNPKENNLQHHATIFLQVVDRLEEVDNTVTLIILAVV 60
MNNISIVLRDLEFSDTGKYTCHVKNPKENNLQHHATIFLQVVDRLEEVDNTVTLIILAVV
Sbjct: 111 MNNISIVLRDLEFSDTGKYTCHVKNPKENNLQHHATIFLQVVDRLEEVDNTVTLIILAVV 170
Query: 61 GGVIGLLILILLIKKLIIFILKKTREKKKECLVSSSGNDNTENGLPGSKAEEKPPSKV 118
GGVIGLLILILLIKKLIIFILKKTREKKKECLVSSSGNDNTENGLPGSKAEEKPPSKV
Sbjct: 171 GGVIGLLILILLIKKLIIFILKKTREKKKECLVSSSGNDNTENGLPGSKAEEKPPSKV 228
>gi|215272334 sodium channel, voltage-gated, type IV, beta isoform 3
[Homo sapiens]
Length = 118
Score = 232 bits (592), Expect = 4e-62
Identities = 118/118 (100%), Positives = 118/118 (100%)
Query: 1 MNNISIVLRDLEFSDTGKYTCHVKNPKENNLQHHATIFLQVVDRLEEVDNTVTLIILAVV 60
MNNISIVLRDLEFSDTGKYTCHVKNPKENNLQHHATIFLQVVDRLEEVDNTVTLIILAVV
Sbjct: 1 MNNISIVLRDLEFSDTGKYTCHVKNPKENNLQHHATIFLQVVDRLEEVDNTVTLIILAVV 60
Query: 61 GGVIGLLILILLIKKLIIFILKKTREKKKECLVSSSGNDNTENGLPGSKAEEKPPSKV 118
GGVIGLLILILLIKKLIIFILKKTREKKKECLVSSSGNDNTENGLPGSKAEEKPPSKV
Sbjct: 61 GGVIGLLILILLIKKLIIFILKKTREKKKECLVSSSGNDNTENGLPGSKAEEKPPSKV 118
>gi|215272332 sodium channel, voltage-gated, type IV, beta isoform 2
[Homo sapiens]
Length = 94
Score = 141 bits (355), Expect = 1e-34
Identities = 73/74 (98%), Positives = 74/74 (100%)
Query: 45 LEEVDNTVTLIILAVVGGVIGLLILILLIKKLIIFILKKTREKKKECLVSSSGNDNTENG 104
+EEVDNTVTLIILAVVGGVIGLLILILLIKKLIIFILKKTREKKKECLVSSSGNDNTENG
Sbjct: 21 VEEVDNTVTLIILAVVGGVIGLLILILLIKKLIIFILKKTREKKKECLVSSSGNDNTENG 80
Query: 105 LPGSKAEEKPPSKV 118
LPGSKAEEKPPSKV
Sbjct: 81 LPGSKAEEKPPSKV 94
>gi|4759066 sodium channel, voltage-gated, type II, beta [Homo
sapiens]
Length = 215
Score = 55.8 bits (133), Expect = 7e-09
Identities = 33/103 (32%), Positives = 60/103 (58%), Gaps = 10/103 (9%)
Query: 3 NISIVLRDLEFSDTGKYTCHVKNPKENNLQHHATIFLQV-VDRLEEVDNTVTLIILAVVG 61
++S++LR+++ D G Y C++ NP + + + H I LQV ++ E D+TV +I+ A VG
Sbjct: 109 DVSVMLRNVQPEDEGIYNCYIMNPPDRH-RGHGKIHLQVLMEEPPERDSTVAVIVGASVG 167
Query: 62 GVIGLLILILLIKKLIIFILKKTREKKKECLVSSSGNDNTENG 104
G + ++IL+L++ K + +KKE +S+ E G
Sbjct: 168 GFLAVVILVLMVVKCV--------RRKKEQKLSTDDLKTEEEG 202
>gi|4505243 myelin protein zero [Homo sapiens]
Length = 258
Score = 49.3 bits (116), Expect = 6e-07
Identities = 25/70 (35%), Positives = 45/70 (64%), Gaps = 6/70 (8%)
Query: 5 SIVLRDLEFSDTGKYTCHVKNPKE-NNLQHHATIFLQVVDRLEEVDNTVTLIILAVVGGV 63
SIV+ +L++SD G +TC VKNP + T+++ E+V +++ AV+GGV
Sbjct: 121 SIVIHNLDYSDNGTFTCDVKNPPDIVGKTSQVTLYV-----FEKVPTRYGVVLGAVIGGV 175
Query: 64 IGLLILILLI 73
+G+++L+LL+
Sbjct: 176 LGVVLLLLLL 185
>gi|4506357 myelin protein zero-like 1 isoform a [Homo sapiens]
Length = 269
Score = 41.6 bits (96), Expect = 1e-04
Identities = 31/112 (27%), Positives = 57/112 (50%), Gaps = 9/112 (8%)
Query: 5 SIVLRDLEFSDTGKYTCHVKNPKENNLQHHATIFLQVVDRLEEVDNTVTLIILAVVGGVI 64
SI + +++F G Y C VKNP + +Q I L VV++ +N + VVG V
Sbjct: 119 SINIENMQFIHNGTYICDVKNPPDIVVQ-PGHIRLYVVEK----ENLPVFPVWVVVGIVT 173
Query: 65 GLLILILLIKKLIIFILKKTREKKKECLVSSSGNDNTENGLPGSKAEEKPPS 116
+++ + L+ +I+ +L + + K++ +G +E+ P +A K PS
Sbjct: 174 AVVLGLTLLISMILAVLYRRKNSKRD----YTGCSTSESLSPVKQAPRKSPS 221
>gi|171460997 CD226 molecule precursor [Homo sapiens]
Length = 336
Score = 41.2 bits (95), Expect = 2e-04
Identities = 25/91 (27%), Positives = 46/91 (50%), Gaps = 7/91 (7%)
Query: 6 IVLRDLEFSDTGKYTCHVKNPKENNLQHHATIFLQVVDRLEEVDNTVTLIILAVVGGVIG 65
IV+ D+ SD+G Y C+++ N T +++ + DN TL V GG +
Sbjct: 207 IVIPDVTVSDSGLYRCYLQASAGEN----ETFVMRLTVAEGKTDNQYTLF---VAGGTVL 259
Query: 66 LLILILLIKKLIIFILKKTREKKKECLVSSS 96
LL+ ++ I +I+ L + R +++ L + S
Sbjct: 260 LLLFVISITTIIVIFLNRRRRRERRDLFTES 290
>gi|46358426 myelin protein zero-like 1 isoform b [Homo sapiens]
Length = 209
Score = 37.4 bits (85), Expect = 0.003
Identities = 24/86 (27%), Positives = 46/86 (53%), Gaps = 5/86 (5%)
Query: 5 SIVLRDLEFSDTGKYTCHVKNPKENNLQHHATIFLQVVDRLEEVDNTVTLIILAVVGGVI 64
SI + +++F G Y C VKNP + +Q I L VV++ +N + VVG V
Sbjct: 119 SINIENMQFIHNGTYICDVKNPPDIVVQ-PGHIRLYVVEK----ENLPVFPVWVVVGIVT 173
Query: 65 GLLILILLIKKLIIFILKKTREKKKE 90
+++ + L+ +I+ +L + + K++
Sbjct: 174 AVVLGLTLLISMILAVLYRRKNSKRD 199
>gi|21686977 cell adhesion molecule 4 [Homo sapiens]
Length = 388
Score = 37.4 bits (85), Expect = 0.003
Identities = 32/116 (27%), Positives = 50/116 (43%), Gaps = 12/116 (10%)
Query: 5 SIVLRDLEFSDTGKYTCHVKNPKENNLQHHATIFLQVVDRLEEVDNTVTLIILAVVGGVI 64
++ L L +D G YTC N H +++ VV V T + A+VGG++
Sbjct: 275 TLTLPGLVSADNGTYTCEASNKHG----HARALYVLVVYDPGAVVEAQTSVPYAIVGGIL 330
Query: 65 GLLILILLIKKLIIFILKKTREKKKECLVSSSGNDNTE-------NGLPGSKAEEK 113
LL+ L+I L+ + R+K +SG D NG G K +E+
Sbjct: 331 ALLV-FLIICVLVGMVWCSVRQKGSYLTHEASGLDEQGEAREAFLNGSDGHKRKEE 385
>gi|13186249 fibroblast growth factor receptor 1 isoform 9 precursor
[Homo sapiens]
Length = 785
Score = 36.6 bits (83), Expect = 0.004
Identities = 23/81 (28%), Positives = 43/81 (53%), Gaps = 4/81 (4%)
Query: 8 LRDLEFSDTGKYTCHVKNPKENNLQHHATIFLQVVDRLEEVDNTVTL-IILAVVGGVIGL 66
LR++ F D G+YTC N L HH+ +L V++ LEE +T + L ++ G
Sbjct: 328 LRNVSFEDAGEYTCLAGN--SIGLSHHSA-WLTVLEALEERPAVMTSPLYLEIIIYCTGA 384
Query: 67 LILILLIKKLIIFILKKTREK 87
++ ++ +I++ +K +K
Sbjct: 385 FLISCMVGSVIVYKMKSGTKK 405
Score = 25.8 bits (55), Expect = 7.7
Identities = 16/40 (40%), Positives = 24/40 (60%), Gaps = 3/40 (7%)
Query: 5 SIVLRDLEFSDTGKYTCHVKNPKENNLQHHATIFLQVVDR 44
SI++ + SD G YTC V+N + ++ H T L VV+R
Sbjct: 214 SIIMDSVVPSDKGNYTCIVEN-EYGSINH--TYQLDVVER 250
>gi|13186236 fibroblast growth factor receptor 1 isoform 4 precursor
[Homo sapiens]
Length = 731
Score = 36.6 bits (83), Expect = 0.004
Identities = 23/81 (28%), Positives = 43/81 (53%), Gaps = 4/81 (4%)
Query: 8 LRDLEFSDTGKYTCHVKNPKENNLQHHATIFLQVVDRLEEVDNTVTL-IILAVVGGVIGL 66
LR++ F D G+YTC N L HH+ +L V++ LEE +T + L ++ G
Sbjct: 237 LRNVSFEDAGEYTCLAGN--SIGLSHHSA-WLTVLEALEERPAVMTSPLYLEIIIYCTGA 293
Query: 67 LILILLIKKLIIFILKKTREK 87
++ ++ +I++ +K +K
Sbjct: 294 FLISCMVGSVIVYKMKSGTKK 314
Score = 25.8 bits (55), Expect = 7.7
Identities = 16/40 (40%), Positives = 24/40 (60%), Gaps = 3/40 (7%)
Query: 5 SIVLRDLEFSDTGKYTCHVKNPKENNLQHHATIFLQVVDR 44
SI++ + SD G YTC V+N + ++ H T L VV+R
Sbjct: 123 SIIMDSVVPSDKGNYTCIVEN-EYGSINH--TYQLDVVER 159
>gi|13186234 fibroblast growth factor receptor 1 isoform 3 precursor
[Homo sapiens]
Length = 733
Score = 36.6 bits (83), Expect = 0.004
Identities = 23/81 (28%), Positives = 43/81 (53%), Gaps = 4/81 (4%)
Query: 8 LRDLEFSDTGKYTCHVKNPKENNLQHHATIFLQVVDRLEEVDNTVTL-IILAVVGGVIGL 66
LR++ F D G+YTC N L HH+ +L V++ LEE +T + L ++ G
Sbjct: 239 LRNVSFEDAGEYTCLAGN--SIGLSHHSA-WLTVLEALEERPAVMTSPLYLEIIIYCTGA 295
Query: 67 LILILLIKKLIIFILKKTREK 87
++ ++ +I++ +K +K
Sbjct: 296 FLISCMVGSVIVYKMKSGTKK 316
Score = 25.8 bits (55), Expect = 7.7
Identities = 16/40 (40%), Positives = 24/40 (60%), Gaps = 3/40 (7%)
Query: 5 SIVLRDLEFSDTGKYTCHVKNPKENNLQHHATIFLQVVDR 44
SI++ + SD G YTC V+N + ++ H T L VV+R
Sbjct: 125 SIIMDSVVPSDKGNYTCIVEN-EYGSINH--TYQLDVVER 161
>gi|13186251 fibroblast growth factor receptor 1 isoform 2 precursor
[Homo sapiens]
Length = 820
Score = 36.6 bits (83), Expect = 0.004
Identities = 23/81 (28%), Positives = 43/81 (53%), Gaps = 4/81 (4%)
Query: 8 LRDLEFSDTGKYTCHVKNPKENNLQHHATIFLQVVDRLEEVDNTVTL-IILAVVGGVIGL 66
LR++ F D G+YTC N L HH+ +L V++ LEE +T + L ++ G
Sbjct: 326 LRNVSFEDAGEYTCLAGN--SIGLSHHSA-WLTVLEALEERPAVMTSPLYLEIIIYCTGA 382
Query: 67 LILILLIKKLIIFILKKTREK 87
++ ++ +I++ +K +K
Sbjct: 383 FLISCMVGSVIVYKMKSGTKK 403
Score = 25.8 bits (55), Expect = 7.7
Identities = 16/40 (40%), Positives = 24/40 (60%), Gaps = 3/40 (7%)
Query: 5 SIVLRDLEFSDTGKYTCHVKNPKENNLQHHATIFLQVVDR 44
SI++ + SD G YTC V+N + ++ H T L VV+R
Sbjct: 212 SIIMDSVVPSDKGNYTCIVEN-EYGSINH--TYQLDVVER 248
>gi|105990522 fibroblast growth factor receptor 1 isoform 1
precursor [Homo sapiens]
Length = 822
Score = 36.6 bits (83), Expect = 0.004
Identities = 23/81 (28%), Positives = 43/81 (53%), Gaps = 4/81 (4%)
Query: 8 LRDLEFSDTGKYTCHVKNPKENNLQHHATIFLQVVDRLEEVDNTVTL-IILAVVGGVIGL 66
LR++ F D G+YTC N L HH+ +L V++ LEE +T + L ++ G
Sbjct: 328 LRNVSFEDAGEYTCLAGN--SIGLSHHSA-WLTVLEALEERPAVMTSPLYLEIIIYCTGA 384
Query: 67 LILILLIKKLIIFILKKTREK 87
++ ++ +I++ +K +K
Sbjct: 385 FLISCMVGSVIVYKMKSGTKK 405
Score = 25.8 bits (55), Expect = 7.7
Identities = 16/40 (40%), Positives = 24/40 (60%), Gaps = 3/40 (7%)
Query: 5 SIVLRDLEFSDTGKYTCHVKNPKENNLQHHATIFLQVVDR 44
SI++ + SD G YTC V+N + ++ H T L VV+R
Sbjct: 214 SIIMDSVVPSDKGNYTCIVEN-EYGSINH--TYQLDVVER 250
>gi|148664224 adhesion molecule, interacts with CXADR antigen 1
isoform 2 [Homo sapiens]
Length = 384
Score = 36.6 bits (83), Expect = 0.004
Identities = 32/110 (29%), Positives = 50/110 (45%), Gaps = 12/110 (10%)
Query: 2 NNISIVLRDLEFSDTGKYTCHVKNPKENNLQHHATIFLQVVDRLEEVDNTVTLIILAVVG 61
N+ SI+L+ + SD G YTC + NL TI L V T + V+G
Sbjct: 205 NDGSIMLQGVRESDGGNYTCSI---HLGNLVFKKTIVLHVSPEEPRTLVTPAALRPLVLG 261
Query: 62 G-----VIGLLILILLIKKLIIFILKKTREKKKE----CLVSSSGNDNTE 102
G ++G++ +L+ ++I I+KKT K LV ++ N E
Sbjct: 262 GNQLVIIVGIVCATILLLPVLILIVKKTCGNKSSVNSTVLVKNTKKTNPE 311
Score = 26.6 bits (57), Expect = 4.5
Identities = 15/63 (23%), Positives = 33/63 (52%), Gaps = 8/63 (12%)
Query: 2 NNISIVLRDLEFSDTGKYTCHVKNPKENNLQHHATIFLQVVDRLEEVDNTVTLIILAVVG 61
N+ S++L+D++ +D G Y C ++ E+ + A + + + +E ++ VG
Sbjct: 87 NDGSLLLQDVQEADQGTYICEIRLKGESQVFKKAVVLHVLPEEPKE--------LMVHVG 138
Query: 62 GVI 64
G+I
Sbjct: 139 GLI 141
>gi|148664207 adhesion molecule, interacts with CXADR antigen 1
isoform 1 [Homo sapiens]
Length = 394
Score = 36.6 bits (83), Expect = 0.004
Identities = 32/110 (29%), Positives = 50/110 (45%), Gaps = 12/110 (10%)
Query: 2 NNISIVLRDLEFSDTGKYTCHVKNPKENNLQHHATIFLQVVDRLEEVDNTVTLIILAVVG 61
N+ SI+L+ + SD G YTC + NL TI L V T + V+G
Sbjct: 215 NDGSIMLQGVRESDGGNYTCSI---HLGNLVFKKTIVLHVSPEEPRTLVTPAALRPLVLG 271
Query: 62 G-----VIGLLILILLIKKLIIFILKKTREKKKE----CLVSSSGNDNTE 102
G ++G++ +L+ ++I I+KKT K LV ++ N E
Sbjct: 272 GNQLVIIVGIVCATILLLPVLILIVKKTCGNKSSVNSTVLVKNTKKTNPE 321
Score = 26.6 bits (57), Expect = 4.5
Identities = 15/63 (23%), Positives = 33/63 (52%), Gaps = 8/63 (12%)
Query: 2 NNISIVLRDLEFSDTGKYTCHVKNPKENNLQHHATIFLQVVDRLEEVDNTVTLIILAVVG 61
N+ S++L+D++ +D G Y C ++ E+ + A + + + +E ++ VG
Sbjct: 97 NDGSLLLQDVQEADQGTYICEIRLKGESQVFKKAVVLHVLPEEPKE--------LMVHVG 148
Query: 62 GVI 64
G+I
Sbjct: 149 GLI 151
>gi|21536337 myelin protein zero-like 2 precursor [Homo sapiens]
Length = 215
Score = 35.8 bits (81), Expect = 0.007
Identities = 23/80 (28%), Positives = 38/80 (47%), Gaps = 6/80 (7%)
Query: 5 SIVLRDLEFSDTGKYTCHVKNPKE-NNLQHHATIFLQVVDRLEEVDNTVTLIILAVVGGV 63
SI+L L+F D G YTC VKNP + + + + + R E+ + +G
Sbjct: 107 SILLWKLQFDDNGTYTCQVKNPPDVDGVIGEIRLSVVHTVRFSEIH-----FLALAIGSA 161
Query: 64 IGLLILILLIKKLIIFILKK 83
L+I+I+++ L KK
Sbjct: 162 CALMIIIVIVVVLFQHYRKK 181
>gi|5032247 myelin protein zero-like 2 precursor [Homo sapiens]
Length = 215
Score = 35.8 bits (81), Expect = 0.007
Identities = 23/80 (28%), Positives = 38/80 (47%), Gaps = 6/80 (7%)
Query: 5 SIVLRDLEFSDTGKYTCHVKNPKE-NNLQHHATIFLQVVDRLEEVDNTVTLIILAVVGGV 63
SI+L L+F D G YTC VKNP + + + + + R E+ + +G
Sbjct: 107 SILLWKLQFDDNGTYTCQVKNPPDVDGVIGEIRLSVVHTVRFSEIH-----FLALAIGSA 161
Query: 64 IGLLILILLIKKLIIFILKK 83
L+I+I+++ L KK
Sbjct: 162 CALMIIIVIVVVLFQHYRKK 181
>gi|40255157 leucine-rich repeats and immunoglobulin-like domains 3
isoform 2 [Homo sapiens]
Length = 1119
Score = 34.3 bits (77), Expect = 0.022
Identities = 28/114 (24%), Positives = 53/114 (46%), Gaps = 17/114 (14%)
Query: 3 NISIVLRDLEFSDTGKYTCHVKNP--KENNLQHHATIFLQVVDRLE----EVDN----TV 52
N +++ D + SD GKYTC + N E + I D + +D+ TV
Sbjct: 749 NQLLIIVDSDVSDAGKYTCEMSNTLGTERGNVRLSVIPTPTCDSPQMTAPSLDDDGWATV 808
Query: 53 TLIILAVVGGVIGLLILILLIKKLIIFILKKTREKKKECLVSSSGNDNTENGLP 106
++I+AVV V+G + + + I+ TR + ++C ++++ N +P
Sbjct: 809 GVVIIAVVCCVVGTSL-------VWVVIIYHTRRRNEDCSITNTDETNLPADIP 855
Score = 25.8 bits (55), Expect = 7.7
Identities = 9/18 (50%), Positives = 13/18 (72%)
Query: 8 LRDLEFSDTGKYTCHVKN 25
LR++EF+ GKY C + N
Sbjct: 568 LREVEFASEGKYQCVISN 585
>gi|209862903 leucine-rich repeats and immunoglobulin-like domains 3
isoform 1 [Homo sapiens]
Length = 1059
Score = 34.3 bits (77), Expect = 0.022
Identities = 28/114 (24%), Positives = 53/114 (46%), Gaps = 17/114 (14%)
Query: 3 NISIVLRDLEFSDTGKYTCHVKNP--KENNLQHHATIFLQVVDRLE----EVDN----TV 52
N +++ D + SD GKYTC + N E + I D + +D+ TV
Sbjct: 689 NQLLIIVDSDVSDAGKYTCEMSNTLGTERGNVRLSVIPTPTCDSPQMTAPSLDDDGWATV 748
Query: 53 TLIILAVVGGVIGLLILILLIKKLIIFILKKTREKKKECLVSSSGNDNTENGLP 106
++I+AVV V+G + + + I+ TR + ++C ++++ N +P
Sbjct: 749 GVVIIAVVCCVVGTSL-------VWVVIIYHTRRRNEDCSITNTDETNLPADIP 795
Score = 25.8 bits (55), Expect = 7.7
Identities = 9/18 (50%), Positives = 13/18 (72%)
Query: 8 LRDLEFSDTGKYTCHVKN 25
LR++EF+ GKY C + N
Sbjct: 508 LREVEFASEGKYQCVISN 525
>gi|62339432 platelet receptor Gi24 [Homo sapiens]
Length = 311
Score = 33.9 bits (76), Expect = 0.028
Identities = 29/129 (22%), Positives = 52/129 (40%), Gaps = 18/129 (13%)
Query: 3 NISIVLRDLEFSDTGKYTCHVKNPKENNLQH--HATIFLQVVDRLEEVDN---------- 50
N SI +R+L D+G Y C V + ++ +H H + LQV + N
Sbjct: 128 NFSITMRNLTLLDSGLYCCLVVEIRHHHSEHRVHGAMELQVQTGKDAPSNCVVYPSSSQD 187
Query: 51 --TVTLIILAVVGGVIGLLILILLIKKLIIFILKKTREKKKECLVSSSGNDNTENGLPGS 108
+T LA ++G+L L L +++ + K+ + D+ G+
Sbjct: 188 SENITAAALATGACIVGILCLPL----ILLLVYKQRQAASNRRAQELVRMDSNIQGIENP 243
Query: 109 KAEEKPPSK 117
E PP++
Sbjct: 244 GFEASPPAQ 252
>gi|11225607 interleukin 1 receptor accessory protein-like 2 [Homo
sapiens]
Length = 686
Score = 33.9 bits (76), Expect = 0.028
Identities = 18/72 (25%), Positives = 40/72 (55%), Gaps = 9/72 (12%)
Query: 4 ISIVLRDLEFSDTGKYTCHVKNPKENNLQHHATIFLQVVDRLEEVDNTVTLIILAVVGGV 63
++++ + +D YTCHV+N N + HA++ L+ D + +++ + +G +
Sbjct: 314 LALIFDSVVEADLANYTCHVEN---RNGRKHASVLLRKKDLIYKIE------LAGGLGAI 364
Query: 64 IGLLILILLIKK 75
LL+L+++I K
Sbjct: 365 FLLLVLLVVIYK 376
>gi|222144233 fibroblast growth factor receptor 2 isoform 4
precursor [Homo sapiens]
Length = 709
Score = 33.5 bits (75), Expect = 0.037
Identities = 23/83 (27%), Positives = 43/83 (51%), Gaps = 3/83 (3%)
Query: 5 SIVLRDLEFSDTGKYTCHVKNPKENNLQHHATIFLQVVDRLEEVDNTVTLIILAVVGGVI 64
S+++ + SD G YTC V+N + ++ H T L VV E + T + L + I
Sbjct: 215 SLIMESVVPSDKGNYTCVVEN-EYGSINH--TYHLDVVAPGREKEITASPDYLEIAIYCI 271
Query: 65 GLLILILLIKKLIIFILKKTREK 87
G+ ++ ++ +I+ +K T +K
Sbjct: 272 GVFLIACMVVTVILCRMKNTTKK 294
>gi|7657232 interleukin 1 receptor accessory protein-like 1
precursor [Homo sapiens]
Length = 696
Score = 33.1 bits (74), Expect = 0.048
Identities = 19/73 (26%), Positives = 40/73 (54%), Gaps = 9/73 (12%)
Query: 3 NISIVLRDLEFSDTGKYTCHVKNPKENNLQHHATIFLQVVDRLEEVDNTVTLIILAVVGG 62
+IS+++ +E D G Y+C+V+N N + HA++ L + + V+ + +G
Sbjct: 316 SISLIVDSVEEGDLGNYSCYVEN---GNGRRHASVLLHKRELMYTVE------LAGGLGA 366
Query: 63 VIGLLILILLIKK 75
++ LL+ ++ I K
Sbjct: 367 ILLLLVCLVTIYK 379
>gi|8393638 F11 receptor precursor [Homo sapiens]
Length = 299
Score = 32.7 bits (73), Expect = 0.063
Identities = 21/65 (32%), Positives = 34/65 (52%), Gaps = 7/65 (10%)
Query: 6 IVLRDLEFSDTGKYTCHVKNPKENNLQHHATIFLQVVDRLEEVDNTVTLIILAVVGGVIG 65
+V L SDTG+Y+C +N + +A R+E V+ V +I+ AV+ +I
Sbjct: 197 LVFDPLSASDTGEYSCEARNGYGTPMTSNAV-------RMEAVERNVGVIVAAVLVTLIL 249
Query: 66 LLILI 70
L IL+
Sbjct: 250 LGILV 254
>gi|148664211 immunoglobulin superfamily, member 4D isoform 2 [Homo
sapiens]
Length = 414
Score = 32.3 bits (72), Expect = 0.082
Identities = 17/74 (22%), Positives = 36/74 (48%), Gaps = 3/74 (4%)
Query: 5 SIVLRDLEFSDTGKYTCHVKNPKENNLQHHATIFLQVVDRLEEVDNTVTLIILAVVGGVI 64
++ + +L +D G Y C N + H+ L V D + ++ + AV+GGV+
Sbjct: 297 NLFINNLNKTDNGTYRCEASNIVG---KAHSDYMLYVYDSRAGEEGSIRAVDHAVIGGVV 353
Query: 65 GLLILILLIKKLII 78
+++ +L +I+
Sbjct: 354 AVVVFAMLCLLIIL 367
>gi|45505167 immunoglobulin superfamily, member 1 isoform 1 [Homo
sapiens]
Length = 1336
Score = 32.3 bits (72), Expect = 0.082
Identities = 16/45 (35%), Positives = 27/45 (60%), Gaps = 2/45 (4%)
Query: 2 NNISIVLRDLEFSDTGKYTCHVKNPKENNLQ--HHATIFLQVVDR 44
+N S L ++ +SDTG Y+CH + +++ H T+ L VVD+
Sbjct: 373 DNTSFFLNNVTYSDTGIYSCHYLLTWKTSIRMPSHNTVELMVVDK 417
>gi|56788393 myelin oligodendrocyte glycoprotein isoform beta5
precursor [Homo sapiens]
Length = 213
Score = 32.3 bits (72), Expect = 0.082
Identities = 26/86 (30%), Positives = 47/86 (54%), Gaps = 10/86 (11%)
Query: 4 ISIVLRDLEFSDTGKYTCHVKNPKENNLQHHATIFLQVVDRLEEVDNTVTLIILAVVGGV 63
+++ +R++ FSD G +TC ++++ Q A + L+V D V V L++LAV
Sbjct: 110 VTLRIRNVRFSDEGGFTCFF---RDHSYQEEAAMELKVEDPFYWVSPGV-LVLLAV---- 161
Query: 64 IGLLILILLIKKLIIFILKKTREKKK 89
L +L+L I +IF+ + R + K
Sbjct: 162 --LPVLLLQITVGLIFLCLQYRLRGK 185
>gi|56788391 myelin oligodendrocyte glycoprotein isoform beta2
precursor [Homo sapiens]
Length = 206
Score = 32.3 bits (72), Expect = 0.082
Identities = 26/86 (30%), Positives = 47/86 (54%), Gaps = 10/86 (11%)
Query: 4 ISIVLRDLEFSDTGKYTCHVKNPKENNLQHHATIFLQVVDRLEEVDNTVTLIILAVVGGV 63
+++ +R++ FSD G +TC ++++ Q A + L+V D V V L++LAV
Sbjct: 110 VTLRIRNVRFSDEGGFTCFF---RDHSYQEEAAMELKVEDPFYWVSPGV-LVLLAV---- 161
Query: 64 IGLLILILLIKKLIIFILKKTREKKK 89
L +L+L I +IF+ + R + K
Sbjct: 162 --LPVLLLQITVGLIFLCLQYRLRGK 185
>gi|56788389 myelin oligodendrocyte glycoprotein isoform alpha3
precursor [Homo sapiens]
Length = 224
Score = 32.3 bits (72), Expect = 0.082
Identities = 26/86 (30%), Positives = 47/86 (54%), Gaps = 10/86 (11%)
Query: 4 ISIVLRDLEFSDTGKYTCHVKNPKENNLQHHATIFLQVVDRLEEVDNTVTLIILAVVGGV 63
+++ +R++ FSD G +TC ++++ Q A + L+V D V V L++LAV
Sbjct: 110 VTLRIRNVRFSDEGGFTCFF---RDHSYQEEAAMELKVEDPFYWVSPGV-LVLLAV---- 161
Query: 64 IGLLILILLIKKLIIFILKKTREKKK 89
L +L+L I +IF+ + R + K
Sbjct: 162 --LPVLLLQITVGLIFLCLQYRLRGK 185
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.317 0.137 0.377
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,445,442
Number of Sequences: 37866
Number of extensions: 163230
Number of successful extensions: 1454
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 91
Number of HSP's successfully gapped in prelim test: 107
Number of HSP's that attempted gapping in prelim test: 1121
Number of HSP's gapped (non-prelim): 431
length of query: 118
length of database: 18,247,518
effective HSP length: 88
effective length of query: 30
effective length of database: 14,915,310
effective search space: 447459300
effective search space used: 447459300
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 55 (25.8 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.