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Search of human proteins with 21450729
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|21450729 hypothetical protein LOC219833 [Homo sapiens]
(145 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|21450729 hypothetical protein LOC219833 [Homo sapiens] 301 1e-82
gi|239744133 PREDICTED: hypothetical protein [Homo sapiens] 34 0.038
gi|239755326 PREDICTED: hypothetical protein [Homo sapiens] 31 0.32
gi|4502119 amine oxidase, copper containing 3 precursor [Homo sa... 31 0.32
gi|59814247 budding uninhibited by benzimidazoles 1 beta [Homo s... 29 1.2
gi|67188445 CTD (carboxy-terminal domain, RNA polymerase II, pol... 28 2.1
gi|118402584 F-box and WD repeat domain containing 2 [Homo sapiens] 28 2.1
gi|156938343 talin 2 [Homo sapiens] 28 2.7
gi|55741647 hypothetical protein LOC158405 [Homo sapiens] 28 2.7
gi|22538442 cathepsin Z preproprotein [Homo sapiens] 28 3.5
gi|4502841 carbohydrate (keratan sulfate Gal-6) sulfotransferase... 27 4.6
gi|93141049 collagen, type XII, alpha 1 short isoform precursor ... 27 4.6
gi|93141047 collagen, type XII, alpha 1 long isoform precursor [... 27 4.6
gi|222418791 EF-hand calcium binding domain 4B isoform a [Homo s... 27 4.6
gi|83367077 mucin 16 [Homo sapiens] 27 6.0
gi|239757605 PREDICTED: hypothetical protein [Homo sapiens] 27 6.0
gi|239752107 PREDICTED: hypothetical protein [Homo sapiens] 27 6.0
gi|239746611 PREDICTED: hypothetical protein XP_002343792 [Homo ... 27 6.0
gi|4557467 excision repair cross-complementing rodent repair def... 27 6.0
gi|120952764 mastermind-like domain containing 1 [Homo sapiens] 27 6.0
gi|27735129 hypothetical protein LOC148345 [Homo sapiens] 27 7.9
gi|30410035 late cornified envelope 5A [Homo sapiens] 27 7.9
gi|55743075 angio-associated, migratory cell protein [Homo sapiens] 27 7.9
>gi|21450729 hypothetical protein LOC219833 [Homo sapiens]
Length = 145
Score = 301 bits (772), Expect = 1e-82
Identities = 145/145 (100%), Positives = 145/145 (100%)
Query: 1 MLTRLVLSAHLSSTTSPPWTHAAISWELDNVLMPSPRIWPQVTPTGRSASVRSEGNTSSL 60
MLTRLVLSAHLSSTTSPPWTHAAISWELDNVLMPSPRIWPQVTPTGRSASVRSEGNTSSL
Sbjct: 1 MLTRLVLSAHLSSTTSPPWTHAAISWELDNVLMPSPRIWPQVTPTGRSASVRSEGNTSSL 60
Query: 61 WNFSAGQDVHAIVTRTCESVLSSAVYTHGCGCVRSATNITCQSSGQQRQAARQEEENSIC 120
WNFSAGQDVHAIVTRTCESVLSSAVYTHGCGCVRSATNITCQSSGQQRQAARQEEENSIC
Sbjct: 61 WNFSAGQDVHAIVTRTCESVLSSAVYTHGCGCVRSATNITCQSSGQQRQAARQEEENSIC 120
Query: 121 KAHDSREGRLGYPLSAHQPGSGGPN 145
KAHDSREGRLGYPLSAHQPGSGGPN
Sbjct: 121 KAHDSREGRLGYPLSAHQPGSGGPN 145
>gi|239744133 PREDICTED: hypothetical protein [Homo sapiens]
Length = 375
Score = 34.3 bits (77), Expect = 0.038
Identities = 26/90 (28%), Positives = 42/90 (46%), Gaps = 10/90 (11%)
Query: 41 QVTPTGRSASVRSEGNTSSLWNFSAGQDVHAIVTRTCESVLSSAVYTHGCGCVRSATNIT 100
Q + T + S +S G +S+ N+ + + ++ TC S SS + C C S T+ T
Sbjct: 32 QSSQTSSTCSCQSSGTSSTSCNWQSSR-----ISSTC-SCQSSGTSSTSCSCQSSETSST 85
Query: 101 --CQSSGQQRQAARQE--EENSICKAHDSR 126
CQSSG + + +S C+ SR
Sbjct: 86 CSCQSSGTSSTSCSWQFSRTSSTCRCQSSR 115
Score = 30.4 bits (67), Expect = 0.55
Identities = 25/90 (27%), Positives = 39/90 (43%), Gaps = 10/90 (11%)
Query: 41 QVTPTGRSASVRSEGNTSSLWNFSAGQDVHAIVTRTCESVLSSAVYTHGCGCVRSATNIT 100
Q + T + S +S G +S+ ++ + + TC S SS + C C S T+ T
Sbjct: 182 QSSRTSSTCSCQSSGTSSTSYSCQSSG-----TSSTC-SCQSSGTSSTSCSCQSSGTSST 235
Query: 101 --CQSSGQQRQAA--RQEEENSICKAHDSR 126
CQSSG + + +S C SR
Sbjct: 236 CSCQSSGTSSTSCSWQSSRTSSTCSCQSSR 265
Score = 29.6 bits (65), Expect = 0.93
Identities = 25/90 (27%), Positives = 40/90 (44%), Gaps = 10/90 (11%)
Query: 41 QVTPTGRSASVRSEGNTSSLWNFSAGQDVHAIVTRTCESVLSSAVYTHGCGCVRSATNIT 100
Q + T + S +S G +S+ ++ + + + TC S SS + C C S T+ T
Sbjct: 228 QSSGTSSTCSCQSSGTSSTSCSWQSSR-----TSSTC-SCQSSRTSSTSCSCQSSGTSST 281
Query: 101 --CQSSGQQRQ--AARQEEENSICKAHDSR 126
CQSSG + + +S C SR
Sbjct: 282 CSCQSSGTSSTSCSCQSSRTSSTCSCQFSR 311
>gi|239755326 PREDICTED: hypothetical protein [Homo sapiens]
Length = 375
Score = 31.2 bits (69), Expect = 0.32
Identities = 26/90 (28%), Positives = 40/90 (44%), Gaps = 10/90 (11%)
Query: 41 QVTPTGRSASVRSEGNTSSLWNFSAGQDVHAIVTRTCESVLSSAVYTHGCGCVRSATNIT 100
Q + T + S +S G +S+ N+ + + + TC S SS + C C S T+ T
Sbjct: 32 QSSQTSSTCSCQSSGTSSTSCNWQSSR-----TSSTC-SCQSSGTSSTSCSCQSSETSST 85
Query: 101 --CQSSGQQRQAARQE--EENSICKAHDSR 126
CQSSG + + +S C SR
Sbjct: 86 CSCQSSGTSSTSCSWQFSRTSSTCCCQSSR 115
Score = 30.0 bits (66), Expect = 0.71
Identities = 25/90 (27%), Positives = 40/90 (44%), Gaps = 10/90 (11%)
Query: 41 QVTPTGRSASVRSEGNTSSLWNFSAGQDVHAIVTRTCESVLSSAVYTHGCGCVRSATNIT 100
Q + T + S +S G +S+ ++ + + + TC S SS + C C S T+ T
Sbjct: 228 QSSGTSSTCSCQSSGTSSTSCSWQSSR-----TSSTC-SCQSSGTSSTSCSCQSSGTSST 281
Query: 101 --CQSSGQQRQ--AARQEEENSICKAHDSR 126
CQSSG + + +S C SR
Sbjct: 282 CSCQSSGTSSTSCSCQSSRTSSTCSCQFSR 311
Score = 28.5 bits (62), Expect = 2.1
Identities = 24/89 (26%), Positives = 38/89 (42%), Gaps = 10/89 (11%)
Query: 41 QVTPTGRSASVRSEGNTSSLWNFSAGQDVHAIVTRTCESVLSSAVYTHGCGCVRSATNIT 100
Q + T + S +S G +S+ ++ + + TC S SS + C C S T+ T
Sbjct: 182 QSSRTSSTCSCQSSGTSSTSYSCQSSG-----TSSTC-SCQSSGTSSTSCSCQSSGTSST 235
Query: 101 --CQSSGQQRQAA--RQEEENSICKAHDS 125
CQSSG + + +S C S
Sbjct: 236 CSCQSSGTSSTSCSWQSSRTSSTCSCQSS 264
>gi|4502119 amine oxidase, copper containing 3 precursor [Homo
sapiens]
Length = 763
Score = 31.2 bits (69), Expect = 0.32
Identities = 17/42 (40%), Positives = 20/42 (47%)
Query: 25 SWELDNVLMPSPRIWPQVTPTGRSASVRSEGNTSSLWNFSAG 66
SW L + + P P Q P G SV+ SSLW FS G
Sbjct: 299 SWSLKSPVPPGPAPPLQFYPQGPRFSVQGSRVASSLWTFSFG 340
>gi|59814247 budding uninhibited by benzimidazoles 1 beta [Homo
sapiens]
Length = 1050
Score = 29.3 bits (64), Expect = 1.2
Identities = 20/53 (37%), Positives = 24/53 (45%), Gaps = 6/53 (11%)
Query: 8 SAHLSSTTSPPWTHAAISWELDNVLMPSPRIWPQVTPTGRSASVRSEGNTSSL 60
+A LS T PW + +N L P W TGRS R GNT+SL
Sbjct: 284 TAELSKPTVQPWIAPPMPRAKENELQAGP--WN----TGRSLEHRPRGNTASL 330
>gi|67188445 CTD (carboxy-terminal domain, RNA polymerase II,
polypeptide A) phosphatase, subunit 1 isoform FCP1a
[Homo sapiens]
Length = 961
Score = 28.5 bits (62), Expect = 2.1
Identities = 15/41 (36%), Positives = 21/41 (51%)
Query: 103 SSGQQRQAARQEEENSICKAHDSREGRLGYPLSAHQPGSGG 143
S ++R+ QEEE K RE LG P S+ + +GG
Sbjct: 872 SDSEKRRPEEQEEEPQPRKPGTRRERTLGAPASSERSAAGG 912
>gi|118402584 F-box and WD repeat domain containing 2 [Homo sapiens]
Length = 454
Score = 28.5 bits (62), Expect = 2.1
Identities = 12/28 (42%), Positives = 18/28 (64%)
Query: 53 SEGNTSSLWNFSAGQDVHAIVTRTCESV 80
S+ ++ LW+ S GQ V+ I T TC +V
Sbjct: 165 SDDLSAKLWDVSTGQCVYGIQTHTCAAV 192
>gi|156938343 talin 2 [Homo sapiens]
Length = 2542
Score = 28.1 bits (61), Expect = 2.7
Identities = 28/117 (23%), Positives = 44/117 (37%), Gaps = 21/117 (17%)
Query: 37 RIWPQVTPTGRSASVRSE-----GNTSSLWNFSAGQDVHAIVTRTCESVLSSAVYTHGCG 91
R+W Q + S+ T+S+ N +AG T GC
Sbjct: 532 RVWVQNKVDESKHEIHSQVDAITAGTASVVNLTAGDPADTDYTAV------------GCA 579
Query: 92 CVRSATNITCQSSGQQRQAARQEEE----NSICKAHDSREGRLGYPLSAHQPGSGGP 144
++N+T S G + AA ++E + +A + G + L A QP SG P
Sbjct: 580 ITTISSNLTEMSKGVKLLAALMDDEVGSGEDLLRAARTLAGAVSDLLKAVQPTSGEP 636
>gi|55741647 hypothetical protein LOC158405 [Homo sapiens]
Length = 716
Score = 28.1 bits (61), Expect = 2.7
Identities = 11/27 (40%), Positives = 16/27 (59%)
Query: 53 SEGNTSSLWNFSAGQDVHAIVTRTCES 79
S GN +++W SAG H +T TC +
Sbjct: 40 SHGNLTAMWGCSAGHAYHWPLTATCRA 66
>gi|22538442 cathepsin Z preproprotein [Homo sapiens]
Length = 303
Score = 27.7 bits (60), Expect = 3.5
Identities = 19/77 (24%), Positives = 29/77 (37%), Gaps = 11/77 (14%)
Query: 10 HLSSTTSPPWTHAAISWELDNVLMPSPRIWP-------QVTPTGRSASVRSEGNTSSLWN 62
H+ W HA+ S D + + WP V G + S GN S+W+
Sbjct: 84 HIPQYCGSCWAHASTSAMADRINIKRKGAWPSTLLSVQNVIDCGNAGSCEG-GNDLSVWD 142
Query: 63 FSAGQDVHAIVTRTCES 79
++ H I TC +
Sbjct: 143 YA---HQHGIPDETCNN 156
>gi|4502841 carbohydrate (keratan sulfate Gal-6) sulfotransferase 1
[Homo sapiens]
Length = 411
Score = 27.3 bits (59), Expect = 4.6
Identities = 11/37 (29%), Positives = 17/37 (45%)
Query: 50 SVRSEGNTSSLWNFSAGQDVHAIVTRTCESVLSSAVY 86
+VR+ T+ W F D+ A C+ VL+ Y
Sbjct: 349 TVRNSAATAEKWRFRLSYDIVAFAQNACQQVLAQLGY 385
>gi|93141049 collagen, type XII, alpha 1 short isoform precursor
[Homo sapiens]
Length = 1899
Score = 27.3 bits (59), Expect = 4.6
Identities = 27/107 (25%), Positives = 41/107 (38%), Gaps = 7/107 (6%)
Query: 38 IWPQVTPTGRSASVRSEGNTSSLWNFSAGQDVHAIVTRTCESVLSSAVYTHGCGCVRSAT 97
++ V T S S+ GNT + + ++ T SV A+Y+ G G A
Sbjct: 803 VYSPVDGTRPSESIVVPGNTRMV-------HLERLIPDTLYSVNLVALYSDGEGNPSPAQ 855
Query: 98 NITCQSSGQQRQAARQEEENSICKAHDSREGRLGYPLSAHQPGSGGP 144
T SG + E NS+ A D +G + + P G P
Sbjct: 856 GRTLPRSGPRNLRVFGETTNSLSVAWDHADGPVQQYRIIYSPTVGDP 902
>gi|93141047 collagen, type XII, alpha 1 long isoform precursor [Homo
sapiens]
Length = 3063
Score = 27.3 bits (59), Expect = 4.6
Identities = 27/107 (25%), Positives = 41/107 (38%), Gaps = 7/107 (6%)
Query: 38 IWPQVTPTGRSASVRSEGNTSSLWNFSAGQDVHAIVTRTCESVLSSAVYTHGCGCVRSAT 97
++ V T S S+ GNT + + ++ T SV A+Y+ G G A
Sbjct: 1967 VYSPVDGTRPSESIVVPGNTRMV-------HLERLIPDTLYSVNLVALYSDGEGNPSPAQ 2019
Query: 98 NITCQSSGQQRQAARQEEENSICKAHDSREGRLGYPLSAHQPGSGGP 144
T SG + E NS+ A D +G + + P G P
Sbjct: 2020 GRTLPRSGPRNLRVFGETTNSLSVAWDHADGPVQQYRIIYSPTVGDP 2066
>gi|222418791 EF-hand calcium binding domain 4B isoform a [Homo
sapiens]
Length = 731
Score = 27.3 bits (59), Expect = 4.6
Identities = 13/32 (40%), Positives = 17/32 (53%)
Query: 113 QEEENSICKAHDSREGRLGYPLSAHQPGSGGP 144
+EEE S G GYPL+ +PG+G P
Sbjct: 427 EEEEEVFGIPRRSSLGLSGYPLTEEEPGTGEP 458
>gi|83367077 mucin 16 [Homo sapiens]
Length = 14507
Score = 26.9 bits (58), Expect = 6.0
Identities = 19/68 (27%), Positives = 31/68 (45%), Gaps = 11/68 (16%)
Query: 3 TRLVLSAHLSSTTSPPWTHAAISWELDNVLMPSPR-----------IWPQVTPTGRSASV 51
+++ S +STT P TH+ E +L PR ++PQV+ T S ++
Sbjct: 11745 SQITSSGAATSTTVPTLTHSPGMPETTALLSTHPRTETSKTFPASTVFPQVSETTASLTI 11804
Query: 52 RSEGNTSS 59
R TS+
Sbjct: 11805 RPGAETST 11812
>gi|239757605 PREDICTED: hypothetical protein [Homo sapiens]
Length = 115
Score = 26.9 bits (58), Expect = 6.0
Identities = 17/73 (23%), Positives = 29/73 (39%), Gaps = 5/73 (6%)
Query: 26 WELDNVLMPSPRIWPQVTPTGRSASVRSEGNTSSLWNFSAGQDV---HAIVTRTCESVLS 82
W L L P R WP+ P+G+ R + W + + ++ +SV++
Sbjct: 5 WAL--ALTPRRRWWPRARPSGQPRPSRGSSLVPAPWRVRVDRCLPFRAVLIANAAQSVVA 62
Query: 83 SAVYTHGCGCVRS 95
S + CV S
Sbjct: 63 SRHLSRAFTCVHS 75
>gi|239752107 PREDICTED: hypothetical protein [Homo sapiens]
Length = 115
Score = 26.9 bits (58), Expect = 6.0
Identities = 17/73 (23%), Positives = 29/73 (39%), Gaps = 5/73 (6%)
Query: 26 WELDNVLMPSPRIWPQVTPTGRSASVRSEGNTSSLWNFSAGQDV---HAIVTRTCESVLS 82
W L L P R WP+ P+G+ R + W + + ++ +SV++
Sbjct: 5 WAL--ALTPRRRWWPRARPSGQPRPSRGSSLVPAPWRVRVDRCLPFRAVLIANAAQSVVA 62
Query: 83 SAVYTHGCGCVRS 95
S + CV S
Sbjct: 63 SRHLSRAFTCVHS 75
>gi|239746611 PREDICTED: hypothetical protein XP_002343792 [Homo
sapiens]
Length = 115
Score = 26.9 bits (58), Expect = 6.0
Identities = 17/73 (23%), Positives = 29/73 (39%), Gaps = 5/73 (6%)
Query: 26 WELDNVLMPSPRIWPQVTPTGRSASVRSEGNTSSLWNFSAGQDV---HAIVTRTCESVLS 82
W L L P R WP+ P+G+ R + W + + ++ +SV++
Sbjct: 5 WAL--ALTPRRRWWPRARPSGQPRPSRGSSLVPAPWRVRVDRCLPFRAVLIANAAQSVVA 62
Query: 83 SAVYTHGCGCVRS 95
S + CV S
Sbjct: 63 SRHLSRAFTCVHS 75
>gi|4557467 excision repair cross-complementing rodent repair
deficiency, complementation group 8 isoform 1 [Homo
sapiens]
Length = 396
Score = 26.9 bits (58), Expect = 6.0
Identities = 11/37 (29%), Positives = 16/37 (43%)
Query: 56 NTSSLWNFSAGQDVHAIVTRTCESVLSSAVYTHGCGC 92
N LWN S G++ + C + +T CGC
Sbjct: 267 NRMRLWNSSNGENTLVNYGKVCNNSKKGLKFTVSCGC 303
>gi|120952764 mastermind-like domain containing 1 [Homo sapiens]
Length = 774
Score = 26.9 bits (58), Expect = 6.0
Identities = 17/64 (26%), Positives = 30/64 (46%), Gaps = 5/64 (7%)
Query: 86 YTHGCGCVRSATNITCQSSGQQRQAARQEEENSICKAHDSREGR-----LGYPLSAHQPG 140
+T C +RS T + S QQ+Q +Q++ N I K S + + +++ PG
Sbjct: 473 FTPQCSLIRSLTPTSNLLSQQQQQQQQQQQANVIFKPISSNSSKTLSMIMQQGMASSSPG 532
Query: 141 SGGP 144
+ P
Sbjct: 533 ATEP 536
>gi|27735129 hypothetical protein LOC148345 [Homo sapiens]
Length = 656
Score = 26.6 bits (57), Expect = 7.9
Identities = 15/44 (34%), Positives = 21/44 (47%)
Query: 11 LSSTTSPPWTHAAISWELDNVLMPSPRIWPQVTPTGRSASVRSE 54
++ T+SPP T W VL+PS GR AS++ E
Sbjct: 582 VAHTSSPPSTQTLSLWAPTGVLLPSLVELEYPFQAGRGASLQQE 625
>gi|30410035 late cornified envelope 5A [Homo sapiens]
Length = 118
Score = 26.6 bits (57), Expect = 7.9
Identities = 18/66 (27%), Positives = 26/66 (39%)
Query: 77 CESVLSSAVYTHGCGCVRSATNITCQSSGQQRQAARQEEENSICKAHDSREGRLGYPLSA 136
C +SS + GC S C S + RQ+ R+ ++S C S + G
Sbjct: 44 CPPPVSSCCGSSSGGCCSSEGGGCCLSHHRPRQSLRRRPQSSSCCGSGSGQQSGGSSCCH 103
Query: 137 HQPGSG 142
GSG
Sbjct: 104 SSGGSG 109
>gi|55743075 angio-associated, migratory cell protein [Homo sapiens]
Length = 434
Score = 26.6 bits (57), Expect = 7.9
Identities = 11/37 (29%), Positives = 17/37 (45%)
Query: 36 PRIWPQVTPTGRSASVRSEGNTSSLWNFSAGQDVHAI 72
P +V P G+ A V E T +W+ G +H +
Sbjct: 217 PATCGRVLPDGKRAVVGYEDGTIRIWDLKQGSPIHVL 253
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.313 0.124 0.387
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,290,332
Number of Sequences: 37866
Number of extensions: 256107
Number of successful extensions: 612
Number of sequences better than 10.0: 23
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 12
Number of HSP's that attempted gapping in prelim test: 594
Number of HSP's gapped (non-prelim): 31
length of query: 145
length of database: 18,247,518
effective HSP length: 92
effective length of query: 53
effective length of database: 14,763,846
effective search space: 782483838
effective search space used: 782483838
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 57 (26.6 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.