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Search of human proteins with 21362098
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|21362098 required for meiotic nuclear division 5 homolog B
[Homo sapiens]
(393 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|21362098 required for meiotic nuclear division 5 homolog B [H... 796 0.0
gi|12232469 required for meiotic nuclear division 5 homolog A [H... 570 e-162
gi|62953131 macrophage erythroblast attacher isoform 1 [Homo sap... 77 2e-14
gi|62953129 macrophage erythroblast attacher isoform 2 [Homo sap... 50 5e-06
gi|31563507 GRIP and coiled-coil domain-containing 2 [Homo sapiens] 36 0.069
gi|153791514 tripartite motif-containing 32 [Homo sapiens] 35 0.12
gi|153792582 tripartite motif-containing 32 [Homo sapiens] 35 0.12
gi|112734867 retinitis pigmentosa GTPase regulator interacting p... 35 0.15
gi|239757979 PREDICTED: similar to chondroitin sulfate proteogly... 34 0.20
gi|169217335 PREDICTED: similar to chondroitin sulfate proteogly... 34 0.20
gi|239747036 PREDICTED: hypothetical protein XP_002344245 [Homo ... 34 0.20
gi|239747031 PREDICTED: hypothetical protein XP_002344244 [Homo ... 34 0.20
gi|37595555 ring finger protein 125 [Homo sapiens] 33 0.45
gi|30794216 tripartite motif-containing 56 [Homo sapiens] 33 0.58
gi|33188443 microfilament and actin filament cross-linker protei... 31 1.7
gi|33188445 microfilament and actin filament cross-linker protei... 31 1.7
gi|27734761 non-SMC element 2, MMS21 homolog [Homo sapiens] 31 2.2
gi|126012497 dynein, axonemal, heavy polypeptide 8 [Homo sapiens] 31 2.2
gi|73695473 roquin [Homo sapiens] 30 2.9
gi|15208643 ADP-ribosylation factor domain protein 1 isoform gam... 30 3.8
gi|15208641 ADP-ribosylation factor domain protein 1 isoform bet... 30 3.8
gi|4502197 ADP-ribosylation factor domain protein 1 isoform alph... 30 3.8
gi|6715600 golgi autoantigen, golgin subfamily a, 4 [Homo sapiens] 30 3.8
gi|114842389 myosin, heavy polypeptide 7B, cardiac muscle, beta ... 30 3.8
gi|34304360 nephrocystin 3 [Homo sapiens] 30 4.9
gi|5032173 nuclear receptor subfamily 2, group F, member 1 [Homo... 30 4.9
gi|40018614 DRE1 protein [Homo sapiens] 30 4.9
gi|39812378 RAN binding protein 9 [Homo sapiens] 29 6.4
gi|15431316 keratin, hair, basic, 4 [Homo sapiens] 29 6.4
gi|15208660 tripartite motif protein 21 [Homo sapiens] 29 8.4
>gi|21362098 required for meiotic nuclear division 5 homolog B [Homo
sapiens]
Length = 393
Score = 796 bits (2056), Expect = 0.0
Identities = 393/393 (100%), Positives = 393/393 (100%)
Query: 1 MEQCACVERELDKVLQKFLTYGQHCERSLEELLHYVGQLRAELASAALQGTPLSATLSLV 60
MEQCACVERELDKVLQKFLTYGQHCERSLEELLHYVGQLRAELASAALQGTPLSATLSLV
Sbjct: 1 MEQCACVERELDKVLQKFLTYGQHCERSLEELLHYVGQLRAELASAALQGTPLSATLSLV 60
Query: 61 MSQCCRKIKDTVQKLASDHKDIHSSVSRVGKAIDRNFDSEICGVVSDAVWDAREQQQQIL 120
MSQCCRKIKDTVQKLASDHKDIHSSVSRVGKAIDRNFDSEICGVVSDAVWDAREQQQQIL
Sbjct: 61 MSQCCRKIKDTVQKLASDHKDIHSSVSRVGKAIDRNFDSEICGVVSDAVWDAREQQQQIL 120
Query: 121 QMAIVEHLYQQGMLSVAEELCQESTLNVDLDFKQPFLELNRILEALHEQDLGPALEWAVS 180
QMAIVEHLYQQGMLSVAEELCQESTLNVDLDFKQPFLELNRILEALHEQDLGPALEWAVS
Sbjct: 121 QMAIVEHLYQQGMLSVAEELCQESTLNVDLDFKQPFLELNRILEALHEQDLGPALEWAVS 180
Query: 181 HRQRLLELNSSLEFKLHRLHFIRLLAGGPAKQLEALSYARHFQPFARLHQREIQVMMGSL 240
HRQRLLELNSSLEFKLHRLHFIRLLAGGPAKQLEALSYARHFQPFARLHQREIQVMMGSL
Sbjct: 181 HRQRLLELNSSLEFKLHRLHFIRLLAGGPAKQLEALSYARHFQPFARLHQREIQVMMGSL 240
Query: 241 VYLRLGLEKSPYCHLLDSSHWAEICETFTRDACSLLGLSVESPLSVSFASGCVALPVLMN 300
VYLRLGLEKSPYCHLLDSSHWAEICETFTRDACSLLGLSVESPLSVSFASGCVALPVLMN
Sbjct: 241 VYLRLGLEKSPYCHLLDSSHWAEICETFTRDACSLLGLSVESPLSVSFASGCVALPVLMN 300
Query: 301 IKAVIEQRQCTGVWNHKDELPIEIELGMKCWYHSVFACPILRQQTSDSNPPIKLICGHVI 360
IKAVIEQRQCTGVWNHKDELPIEIELGMKCWYHSVFACPILRQQTSDSNPPIKLICGHVI
Sbjct: 301 IKAVIEQRQCTGVWNHKDELPIEIELGMKCWYHSVFACPILRQQTSDSNPPIKLICGHVI 360
Query: 361 SRDALNKLINGGKLKCPYCPMEQNPADGKRIIF 393
SRDALNKLINGGKLKCPYCPMEQNPADGKRIIF
Sbjct: 361 SRDALNKLINGGKLKCPYCPMEQNPADGKRIIF 393
>gi|12232469 required for meiotic nuclear division 5 homolog A [Homo
sapiens]
Length = 391
Score = 570 bits (1468), Expect = e-162
Identities = 275/393 (69%), Positives = 325/393 (82%), Gaps = 2/393 (0%)
Query: 1 MEQCACVERELDKVLQKFLTYGQHCERSLEELLHYVGQLRAELASAALQGTPLSATLSLV 60
M+QC VEREL+KVL KF YGQ CER LEEL+ Y G L+ E+ + Q LS TLSLV
Sbjct: 1 MDQCVTVERELEKVLHKFSGYGQLCERGLEELIDYTGGLKHEILQSHGQDAELSGTLSLV 60
Query: 61 MSQCCRKIKDTVQKLASDHKDIHSSVSRVGKAIDRNFDSEICGVVSDAVWDAREQQQQIL 120
++QCC++IKDTVQKLASDHKDIHSSVSRVGKAID+NFDS+I V D W A Q++L
Sbjct: 61 LTQCCKRIKDTVQKLASDHKDIHSSVSRVGKAIDKNFDSDISSVGIDGCWQA--DSQRLL 118
Query: 121 QMAIVEHLYQQGMLSVAEELCQESTLNVDLDFKQPFLELNRILEALHEQDLGPALEWAVS 180
+VEH ++QGML VAEELCQES L+VD K+PF+ELNRILEAL + L PALEWAVS
Sbjct: 119 NEVMVEHFFRQGMLDVAEELCQESGLSVDPSQKEPFVELNRILEALKVRVLRPALEWAVS 178
Query: 181 HRQRLLELNSSLEFKLHRLHFIRLLAGGPAKQLEALSYARHFQPFARLHQREIQVMMGSL 240
+R+ L+ NSSLEFKLHRL+FI LL GG Q EAL YA++FQPFA HQ++IQV+MGSL
Sbjct: 179 NREMLIAQNSSLEFKLHRLYFISLLMGGTTNQREALQYAKNFQPFALNHQKDIQVLMGSL 238
Query: 241 VYLRLGLEKSPYCHLLDSSHWAEICETFTRDACSLLGLSVESPLSVSFASGCVALPVLMN 300
VYLR G+E SPY HLLD++ WA+IC+ FTRDAC+LLGLSVESPLSVSF++GCVALP L+N
Sbjct: 239 VYLRQGIENSPYVHLLDANQWADICDIFTRDACALLGLSVESPLSVSFSAGCVALPALIN 298
Query: 301 IKAVIEQRQCTGVWNHKDELPIEIELGMKCWYHSVFACPILRQQTSDSNPPIKLICGHVI 360
IKAVIEQRQCTGVWN KDELPIE++LG KCWYHS+FACPILRQQT+D+NPP+KL+CGH+I
Sbjct: 299 IKAVIEQRQCTGVWNQKDELPIEVDLGKKCWYHSIFACPILRQQTTDNNPPMKLVCGHII 358
Query: 361 SRDALNKLINGGKLKCPYCPMEQNPADGKRIIF 393
SRDALNK+ NG KLKCPYCPMEQ+P D K+I F
Sbjct: 359 SRDALNKMFNGSKLKCPYCPMEQSPGDAKQIFF 391
>gi|62953131 macrophage erythroblast attacher isoform 1 [Homo
sapiens]
Length = 396
Score = 77.4 bits (189), Expect = 2e-14
Identities = 80/353 (22%), Positives = 146/353 (41%), Gaps = 11/353 (3%)
Query: 26 ERSLEELLHYVGQLRAELASAALQGTPLSATLSLVMSQCCRKIKDTVQKLASDHKDIHSS 85
+++++ +V + AEL L G P ++ ++ K+ +K + S
Sbjct: 37 QKNIDRETSHVTMVVAELEKT-LSGCPAVDSVVSLLDGVVEKLSVLKRKAVESIQAEDES 95
Query: 86 VSRVGKAIDRNFDSEICGVVSDAVWDAREQQQQILQMAIVEHLYQQGMLSVAEELCQEST 145
+ I+ + + +VW + + + VEHL + G + A +L ++S
Sbjct: 96 AKLCKRRIEHLKEHSSDQPAAASVWKRKRMDRMM-----VEHLLRCGYYNTAVKLARQSG 150
Query: 146 LNVDLDFKQPFLELNRILEALHEQDLGPALEWAVSHRQRLLELNSSLEFKLHRLHFIRLL 205
+ DL + FL + E+L ++ L W ++ RL ++ S LEF L FI L+
Sbjct: 151 IE-DLVNIEMFLTAKEVEESLERRETATCLAWCHDNKSRLRKMKSCLEFSLRIQEFIELI 209
Query: 206 AGGPAKQLEALSYAR-HFQPFARLHQREIQVMMGSLVYLRLGLEKSPYCHLLDSSHWAEI 264
K+L+A+ +AR HF E++ MG L + SPY LLD + W +
Sbjct: 210 RQN--KRLDAVRHARKHFSQAEGSQLDEVRQAMGMLAF-PPDTHISPYKDLLDPARWRML 266
Query: 265 CETFTRDACSLLGLSVESPLSVSFASGCVALPVLMNIKAVIEQRQCTGVWNHKDELPIEI 324
+ F D L L S +++ +G A+ K + + +
Sbjct: 267 IQQFRYDNYRLHQLGNNSVFTLTLQAGLSAIKTPQCYKEDGSSKSPDCPVCSRSLNKLAQ 326
Query: 325 ELGMKCWYHSVFACPILRQQTSDSNPPIKLICGHVISRDALNKLINGGKLKCP 377
L M +S C I +++NPP+ L G+V ++L + K+ CP
Sbjct: 327 PLPMAHCANSRLVCKISGDVMNENNPPMMLPNGYVYGYNSLLSIRQDDKVVCP 379
>gi|62953129 macrophage erythroblast attacher isoform 2 [Homo
sapiens]
Length = 355
Score = 49.7 bits (117), Expect = 5e-06
Identities = 49/191 (25%), Positives = 79/191 (41%), Gaps = 4/191 (2%)
Query: 188 LNSSLEFKLHRLHFIRLLAGGPAKQLEALSYAR-HFQPFARLHQREIQVMMGSLVYLRLG 246
+ S LEF L FI L+ K+L+A+ +AR HF E++ MG L +
Sbjct: 151 IESCLEFSLRIQEFIELIRQN--KRLDAVRHARKHFSQAEGSQLDEVRQAMGMLAFPP-D 207
Query: 247 LEKSPYCHLLDSSHWAEICETFTRDACSLLGLSVESPLSVSFASGCVALPVLMNIKAVIE 306
SPY LLD + W + + F D L L S +++ +G A+ K
Sbjct: 208 THISPYKDLLDPARWRMLIQQFRYDNYRLHQLGNNSVFTLTLQAGLSAIKTPQCYKEDGS 267
Query: 307 QRQCTGVWNHKDELPIEIELGMKCWYHSVFACPILRQQTSDSNPPIKLICGHVISRDALN 366
+ + + L M +S C I +++NPP+ L G+V ++L
Sbjct: 268 SKSPDCPVCSRSLNKLAQPLPMAHCANSRLVCKISGDVMNENNPPMMLPNGYVYGYNSLL 327
Query: 367 KLINGGKLKCP 377
+ K+ CP
Sbjct: 328 SIRQDDKVVCP 338
>gi|31563507 GRIP and coiled-coil domain-containing 2 [Homo sapiens]
Length = 1684
Score = 35.8 bits (81), Expect = 0.069
Identities = 45/193 (23%), Positives = 84/193 (43%), Gaps = 17/193 (8%)
Query: 3 QCACVERELDKVLQKFLTYGQHCERSLEELLHYVGQLRAELASAALQGTPLSATLSLVMS 62
+C +E+E++++ K +T G ++ L + L E A Q L ++ M
Sbjct: 47 RCTELEKEIEELRSKPVTEGTG--DIIKALTERLDALLLEKAETEQQCLSLKKE-NIKMK 103
Query: 63 QCCRKIKDTVQKLASDHKDIHSSVSRVGKAIDRNFDSEICGVVSDAVWDAREQQQQI--- 119
Q +++D+V K+ HK++ S K I+ N +E+ V S D Q+Q+
Sbjct: 104 Q---EVEDSVTKMGDAHKELEQSHINYVKEIE-NLKNELMAVRSKYSEDKANLQKQLEEA 159
Query: 120 --LQMAIVEHLYQQGMLSVAEELCQESTLNVDLDFKQPFLELNRILEALHEQDLGPALEW 177
Q+ + E L Q + QE + F++ L L + L+A ++ +
Sbjct: 160 MNTQLELSEQLKFQNNSEDNVKKLQEEIEKIRPGFEEQILYLQKQLDATTDEK-----KE 214
Query: 178 AVSHRQRLLELNS 190
V+ Q ++E NS
Sbjct: 215 TVTQLQNIIEANS 227
>gi|153791514 tripartite motif-containing 32 [Homo sapiens]
Length = 653
Score = 35.0 bits (79), Expect = 0.12
Identities = 21/50 (42%), Positives = 26/50 (52%), Gaps = 7/50 (14%)
Query: 335 VFACPILRQQ-TSDSNPPIKLICGHVISRDALNKL----INGGKLKCPYC 379
V CPI + T + P L CGH I R L KL ING ++CP+C
Sbjct: 17 VLECPICMESFTEEQLRPKLLHCGHTICRQCLEKLLASSING--VRCPFC 64
>gi|153792582 tripartite motif-containing 32 [Homo sapiens]
Length = 653
Score = 35.0 bits (79), Expect = 0.12
Identities = 21/50 (42%), Positives = 26/50 (52%), Gaps = 7/50 (14%)
Query: 335 VFACPILRQQ-TSDSNPPIKLICGHVISRDALNKL----INGGKLKCPYC 379
V CPI + T + P L CGH I R L KL ING ++CP+C
Sbjct: 17 VLECPICMESFTEEQLRPKLLHCGHTICRQCLEKLLASSING--VRCPFC 64
>gi|112734867 retinitis pigmentosa GTPase regulator interacting
protein 1 [Homo sapiens]
Length = 1286
Score = 34.7 bits (78), Expect = 0.15
Identities = 36/148 (24%), Positives = 67/148 (45%), Gaps = 17/148 (11%)
Query: 30 EELLHYVGQLRAELASAALQGTPLSATLS--LVMSQCCRKIKDTVQKLASDHKDIHSSVS 87
E LL V +LRAEL + + L + L ++ ++ ++ V+ L + K ++ +
Sbjct: 320 EALLKQVNELRAELKEESKKAVSLKSQLEDVSILQMTLKEFQERVEDLEKERKLLNDNYD 379
Query: 88 RVGKAIDRNFDSEICGVVSDAVWD----AREQQQQILQMAIVEHLYQQGMLSVAEELCQE 143
++ +++ + DS S W A + QQQ+ Q+ + V EL +E
Sbjct: 380 KLLESMLDSSDSS-----SQPHWSNELIAEQLQQQVSQLQDQLDAELEDKRKVLLELSRE 434
Query: 144 STLNVDLDFKQPFLELNRILEALHEQDL 171
N DL LE+ IL+ H+Q++
Sbjct: 435 KAQNEDLK-----LEVTNILQK-HKQEV 456
>gi|239757979 PREDICTED: similar to chondroitin sulfate proteoglycan
4 [Homo sapiens]
Length = 296
Score = 34.3 bits (77), Expect = 0.20
Identities = 31/117 (26%), Positives = 53/117 (45%), Gaps = 6/117 (5%)
Query: 185 LLELNSSLEFKLHRLHFIRLLAGGPAKQLEALSYARHFQPFARLHQREIQVMMGSLVYLR 244
L +++ L+F + + LLA GPA L Y+ H Q L Q E+++ + + + L
Sbjct: 3 LTDIDLQLQFSTSQPEALLLLAAGPADHLLLQLYSGHLQVRVVLGQEELRLQIPAEMLLS 62
Query: 245 LGLEKSPYCHLLD-SSHWAEI-CETFTRDACSLLGLSVESPLSVSFA-SGCVALPVL 298
+ PY +L S W + F + +LG +E P + +G + LP L
Sbjct: 63 ---DSIPYTTVLTVSEGWPTLSVNGFLNASSVVLGAPLEVPYGLFVGNTGSLGLPYL 116
>gi|169217335 PREDICTED: similar to chondroitin sulfate proteoglycan
4 [Homo sapiens]
Length = 296
Score = 34.3 bits (77), Expect = 0.20
Identities = 31/117 (26%), Positives = 53/117 (45%), Gaps = 6/117 (5%)
Query: 185 LLELNSSLEFKLHRLHFIRLLAGGPAKQLEALSYARHFQPFARLHQREIQVMMGSLVYLR 244
L +++ L+F + + LLA GPA L Y+ H Q L Q E+++ + + + L
Sbjct: 3 LTDIDLQLQFSTSQPEALLLLAAGPADHLLLQLYSGHLQVRVVLGQEELRLQIPAEMLLS 62
Query: 245 LGLEKSPYCHLLD-SSHWAEI-CETFTRDACSLLGLSVESPLSVSFA-SGCVALPVL 298
+ PY +L S W + F + +LG +E P + +G + LP L
Sbjct: 63 ---DSIPYTTVLTVSEGWPTLSVNGFLNASSVVLGAPLEVPYGLFVGNTGSLGLPYL 116
>gi|239747036 PREDICTED: hypothetical protein XP_002344245 [Homo
sapiens]
Length = 296
Score = 34.3 bits (77), Expect = 0.20
Identities = 31/117 (26%), Positives = 53/117 (45%), Gaps = 6/117 (5%)
Query: 185 LLELNSSLEFKLHRLHFIRLLAGGPAKQLEALSYARHFQPFARLHQREIQVMMGSLVYLR 244
L +++ L+F + + LLA GPA L Y+ H Q L Q E+++ + + + L
Sbjct: 3 LTDIDLQLQFSTSQPEALLLLAAGPADHLLLQLYSGHLQVRVVLGQEELRLQIPAEMLLS 62
Query: 245 LGLEKSPYCHLLD-SSHWAEI-CETFTRDACSLLGLSVESPLSVSFA-SGCVALPVL 298
+ PY +L S W + F + +LG +E P + +G + LP L
Sbjct: 63 ---DSIPYTTVLTVSEGWPTLSVNGFLNASSVVLGAPLEVPYGLFVGNTGSLGLPYL 116
>gi|239747031 PREDICTED: hypothetical protein XP_002344244 [Homo
sapiens]
Length = 296
Score = 34.3 bits (77), Expect = 0.20
Identities = 31/117 (26%), Positives = 53/117 (45%), Gaps = 6/117 (5%)
Query: 185 LLELNSSLEFKLHRLHFIRLLAGGPAKQLEALSYARHFQPFARLHQREIQVMMGSLVYLR 244
L +++ L+F + + LLA GPA L Y+ H Q L Q E+++ + + + L
Sbjct: 3 LTDIDLQLQFSTSQPEALLLLAAGPADHLLLQLYSGHLQVRVVLGQEELRLQIPAEMLLS 62
Query: 245 LGLEKSPYCHLLD-SSHWAEI-CETFTRDACSLLGLSVESPLSVSFA-SGCVALPVL 298
+ PY +L S W + F + +LG +E P + +G + LP L
Sbjct: 63 ---DSIPYTTVLTVSEGWPTLSVNGFLNASSVVLGAPLEVPYGLFVGNTGSLGLPYL 116
>gi|37595555 ring finger protein 125 [Homo sapiens]
Length = 232
Score = 33.1 bits (74), Expect = 0.45
Identities = 15/40 (37%), Positives = 19/40 (47%), Gaps = 4/40 (10%)
Query: 351 PIKLICGHVISRDALNKLINGGKLKCPYC----PMEQNPA 386
P++ CGHV R + + K CPYC P E PA
Sbjct: 47 PVRTRCGHVFCRSCIATSLKNNKWTCPYCRAYLPSEGVPA 86
>gi|30794216 tripartite motif-containing 56 [Homo sapiens]
Length = 755
Score = 32.7 bits (73), Expect = 0.58
Identities = 16/43 (37%), Positives = 23/43 (53%), Gaps = 3/43 (6%)
Query: 337 ACPILRQQTSDSNPPIKLICGHVISRDALNKLINGGKLKCPYC 379
AC I +Q P L C H +D L +L +GG+++CP C
Sbjct: 20 ACKICLEQL---RAPKTLPCLHTYCQDCLAQLADGGRVRCPEC 59
>gi|33188443 microfilament and actin filament cross-linker protein
isoform b [Homo sapiens]
Length = 5938
Score = 31.2 bits (69), Expect = 1.7
Identities = 42/187 (22%), Positives = 83/187 (44%), Gaps = 22/187 (11%)
Query: 10 ELDKVLQKFLTYGQHCERSLEELLHYVGQLRAELASAALQGTPLSATLSLVMSQCCRKIK 69
E +LQK + Q + SLE LL +G++ L+G +S+ S V+ +
Sbjct: 2537 ERSSLLQKAIAQSQSVQESLESLLQSIGEVEQN-----LEGKQVSSLSSGVIQEALATNM 2591
Query: 70 DTVQKLASDHKDIHSSVSRVGKAIDRNFDSEICGVVSDAVWDAREQQQQILQMAIVEHLY 129
Q +A + ++ V + ++ DS V+ + + ++ +Q+ L
Sbjct: 2592 KLKQDIARQKSSLEATREMVTRFME-TADSTTAAVLQGKLAEVSQRFEQLC-------LQ 2643
Query: 130 QQGMLSVAEELCQESTLNVDLDFK-QPFLE-LNRILEALHEQDLGPALEWAVSH-RQRLL 186
QQ S ++L ++ + L K Q F+E +R+L + ++ D ++H Q++
Sbjct: 2644 QQEKESSLKKLLPQAEMFEHLSGKLQQFMENKSRMLASGNQPDQD------ITHFFQQIQ 2697
Query: 187 ELNSSLE 193
ELN +E
Sbjct: 2698 ELNLEME 2704
>gi|33188445 microfilament and actin filament cross-linker protein
isoform a [Homo sapiens]
Length = 5430
Score = 31.2 bits (69), Expect = 1.7
Identities = 42/187 (22%), Positives = 83/187 (44%), Gaps = 22/187 (11%)
Query: 10 ELDKVLQKFLTYGQHCERSLEELLHYVGQLRAELASAALQGTPLSATLSLVMSQCCRKIK 69
E +LQK + Q + SLE LL +G++ L+G +S+ S V+ +
Sbjct: 2035 ERSSLLQKAIAQSQSVQESLESLLQSIGEVEQN-----LEGKQVSSLSSGVIQEALATNM 2089
Query: 70 DTVQKLASDHKDIHSSVSRVGKAIDRNFDSEICGVVSDAVWDAREQQQQILQMAIVEHLY 129
Q +A + ++ V + ++ DS V+ + + ++ +Q+ L
Sbjct: 2090 KLKQDIARQKSSLEATREMVTRFME-TADSTTAAVLQGKLAEVSQRFEQLC-------LQ 2141
Query: 130 QQGMLSVAEELCQESTLNVDLDFK-QPFLE-LNRILEALHEQDLGPALEWAVSH-RQRLL 186
QQ S ++L ++ + L K Q F+E +R+L + ++ D ++H Q++
Sbjct: 2142 QQEKESSLKKLLPQAEMFEHLSGKLQQFMENKSRMLASGNQPDQD------ITHFFQQIQ 2195
Query: 187 ELNSSLE 193
ELN +E
Sbjct: 2196 ELNLEME 2202
>gi|27734761 non-SMC element 2, MMS21 homolog [Homo sapiens]
Length = 247
Score = 30.8 bits (68), Expect = 2.2
Identities = 15/47 (31%), Positives = 23/47 (48%), Gaps = 4/47 (8%)
Query: 336 FACPILRQQTSDSNPPIKLICGHVISRDALNKLING--GKLKCPYCP 380
F CPI +++ P +CGH DA+ ++I + K YCP
Sbjct: 167 FTCPITKEEMK--KPVKNKVCGHTYEEDAIVRMIESRQKRKKKAYCP 211
>gi|126012497 dynein, axonemal, heavy polypeptide 8 [Homo sapiens]
Length = 4490
Score = 30.8 bits (68), Expect = 2.2
Identities = 20/57 (35%), Positives = 30/57 (52%), Gaps = 9/57 (15%)
Query: 96 NFDSEICGVVSDAVW------DAREQQQQILQMAI---VEHLYQQGMLSVAEELCQE 143
NFD +I VV + D EQ +++L++ + LY QG+L +ELCQE
Sbjct: 600 NFDPKILEVVRETKCMIKMKLDVPEQAKRLLKLESKLKADKLYLQGLLQYYDELCQE 656
>gi|73695473 roquin [Homo sapiens]
Length = 1133
Score = 30.4 bits (67), Expect = 2.9
Identities = 16/43 (37%), Positives = 23/43 (53%), Gaps = 4/43 (9%)
Query: 337 ACPILRQQTSDS-NPPIKLICGHVISRDALNKLINGGKLKCPY 378
+CPI Q ++ PI L CGH + + LNKL + CP+
Sbjct: 13 SCPICTQTFDETIRKPISLGCGHTVCKMCLNKL---HRKACPF 52
>gi|15208643 ADP-ribosylation factor domain protein 1 isoform gamma
[Homo sapiens]
Length = 546
Score = 30.0 bits (66), Expect = 3.8
Identities = 11/29 (37%), Positives = 19/29 (65%), Gaps = 1/29 (3%)
Query: 351 PIKLICGHVISRDALNKL-INGGKLKCPY 378
P L+CGH + D L +L ++G ++CP+
Sbjct: 46 PRLLLCGHTVCHDCLTRLPLHGRAIRCPF 74
>gi|15208641 ADP-ribosylation factor domain protein 1 isoform beta
[Homo sapiens]
Length = 569
Score = 30.0 bits (66), Expect = 3.8
Identities = 11/29 (37%), Positives = 19/29 (65%), Gaps = 1/29 (3%)
Query: 351 PIKLICGHVISRDALNKL-INGGKLKCPY 378
P L+CGH + D L +L ++G ++CP+
Sbjct: 46 PRLLLCGHTVCHDCLTRLPLHGRAIRCPF 74
>gi|4502197 ADP-ribosylation factor domain protein 1 isoform alpha
[Homo sapiens]
Length = 574
Score = 30.0 bits (66), Expect = 3.8
Identities = 11/29 (37%), Positives = 19/29 (65%), Gaps = 1/29 (3%)
Query: 351 PIKLICGHVISRDALNKL-INGGKLKCPY 378
P L+CGH + D L +L ++G ++CP+
Sbjct: 46 PRLLLCGHTVCHDCLTRLPLHGRAIRCPF 74
>gi|6715600 golgi autoantigen, golgin subfamily a, 4 [Homo sapiens]
Length = 2230
Score = 30.0 bits (66), Expect = 3.8
Identities = 33/133 (24%), Positives = 55/133 (41%), Gaps = 20/133 (15%)
Query: 112 AREQQQQILQMAIVEHLYQQGMLSVAEE-------LCQESTLNVDLDFKQPFLELNRILE 164
AR++Q+ ++ E +Q+ M E+ + QE L ++ L+ IL
Sbjct: 490 ARKEQELTKKLQTREREFQEQMKVALEKSQSEYLKISQEKEQQESLALEELELQKKAILT 549
Query: 165 ALHEQDLGPALEWAVSHRQRLLELNSSLEFKLHRLHFIRLLAGGPAKQLEALSYARHFQP 224
E L + A ++R R+LEL SSLE L + ++ A H +
Sbjct: 550 E-SENKLRDLQQEAETYRTRILELESSLEKSLQE------------NKNQSKDLAVHLEA 596
Query: 225 FARLHQREIQVMM 237
H +EI VM+
Sbjct: 597 EKNKHNKEITVMV 609
>gi|114842389 myosin, heavy polypeptide 7B, cardiac muscle, beta [Homo
sapiens]
Length = 1983
Score = 30.0 bits (66), Expect = 3.8
Identities = 40/177 (22%), Positives = 72/177 (40%), Gaps = 27/177 (15%)
Query: 23 QHCERSLEELLHYVGQLRAELASAALQGTPLSATLSLVMS------QCCRKIKDTVQKLA 76
+H ER+LEE +++ EL +A + L L + + +K + L
Sbjct: 1496 RHLERALEERRRQEEEMQRELEAAQRESRGLGTELFRLRHGHEEALEALETLKRENKNLQ 1555
Query: 77 SDHKDIHSSVSRVGKAIDRNFDSEICGVVSDAVWDAREQQQQILQMAIVEHLYQQGMLSV 136
+ D+ VS GK+I + A E ++ +Q A+ E +G L
Sbjct: 1556 EEISDLTDQVSLSGKSIQE----------LEKTKKALEGEKSEIQAALEE---AEGAL-- 1600
Query: 137 AEELCQESTLNVDLDFKQPFLELNRILEALHEQDLGPALEWAVSHRQRLLELNSSLE 193
EL + TL + L+ Q E++R L E+ +H++ + L +SL+
Sbjct: 1601 --ELEETKTLRIQLELSQVKAEVDRKLAEKDEE----CANLRRNHQRAVESLQASLD 1651
>gi|34304360 nephrocystin 3 [Homo sapiens]
Length = 1330
Score = 29.6 bits (65), Expect = 4.9
Identities = 15/50 (30%), Positives = 27/50 (54%)
Query: 1 MEQCACVERELDKVLQKFLTYGQHCERSLEELLHYVGQLRAELASAALQG 50
ME+ A E + DKV ++F + + E +++LL +L ++L QG
Sbjct: 155 MERAATFEHDRDKVKRQFKIFRETKENEIQDLLRAKRELESKLQRLQAQG 204
>gi|5032173 nuclear receptor subfamily 2, group F, member 1 [Homo
sapiens]
Length = 423
Score = 29.6 bits (65), Expect = 4.9
Identities = 30/89 (33%), Positives = 45/89 (50%), Gaps = 6/89 (6%)
Query: 43 LASAALQGTPLSATLSLVMSQCCRKIKDTVQKLASDHKDIHSSVSRVGKAIDRNFDSEIC 102
LA+A L +P+SA + R ++ V+KL + H D S+ KAI F S+ C
Sbjct: 277 LAAAGLHASPMSADRVVAFMDHIRIFQEQVEKLKALHVD--SAEYSCLKAIVL-FTSDAC 333
Query: 103 GVVSDAVWDAREQQQQILQMAIVEHLYQQ 131
G +SDA E Q+ Q A+ E++ Q
Sbjct: 334 G-LSDAA--HIESLQEKSQCALEEYVRSQ 359
>gi|40018614 DRE1 protein [Homo sapiens]
Length = 600
Score = 29.6 bits (65), Expect = 4.9
Identities = 12/36 (33%), Positives = 21/36 (58%)
Query: 235 VMMGSLVYLRLGLEKSPYCHLLDSSHWAEICETFTR 270
V + +L+Y+ GL K+ YC+ +W + TF+R
Sbjct: 498 VSLNNLIYVAGGLTKAIYCYDPVEDYWMHVQNTFSR 533
>gi|39812378 RAN binding protein 9 [Homo sapiens]
Length = 729
Score = 29.3 bits (64), Expect = 6.4
Identities = 24/99 (24%), Positives = 41/99 (41%), Gaps = 1/99 (1%)
Query: 109 VWDAREQQQQILQMAIVEHLYQQGMLSVAEELCQESTLNVDLDFKQPFLELNRILEALHE 168
+ D + Q ++Q + +L G + AE + + V L+ RI + +
Sbjct: 358 IGDREGEWQTMIQKMVSSYLVHHGYCATAEAFARSTDQTV-LEELASIKNRQRIQKLVLA 416
Query: 169 QDLGPALEWAVSHRQRLLELNSSLEFKLHRLHFIRLLAG 207
+G A+E LLE N +L F L FI ++ G
Sbjct: 417 GRMGEAIETTQQLYPSLLERNPNLLFTLKVRQFIEMVNG 455
>gi|15431316 keratin, hair, basic, 4 [Homo sapiens]
Length = 600
Score = 29.3 bits (64), Expect = 6.4
Identities = 19/64 (29%), Positives = 29/64 (45%), Gaps = 6/64 (9%)
Query: 19 LTYGQHCER------SLEELLHYVGQLRAELASAALQGTPLSATLSLVMSQCCRKIKDTV 72
+T GQHC+ + EL + +L+AE+ A Q L A ++ Q + D
Sbjct: 365 VTAGQHCDNLRNIRNEINELTRLIQRLKAEIEHAKAQRAKLEAAVAEAEQQGEATLSDAK 424
Query: 73 QKLA 76
KLA
Sbjct: 425 CKLA 428
>gi|15208660 tripartite motif protein 21 [Homo sapiens]
Length = 475
Score = 28.9 bits (63), Expect = 8.4
Identities = 9/29 (31%), Positives = 17/29 (58%)
Query: 351 PIKLICGHVISRDALNKLINGGKLKCPYC 379
P+ + CGH ++ ++++ GG CP C
Sbjct: 26 PVSIECGHSFCQECISQVGKGGGSVCPVC 54
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.322 0.136 0.413
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 14,661,217
Number of Sequences: 37866
Number of extensions: 611259
Number of successful extensions: 1584
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 19
Number of HSP's that attempted gapping in prelim test: 1561
Number of HSP's gapped (non-prelim): 39
length of query: 393
length of database: 18,247,518
effective HSP length: 104
effective length of query: 289
effective length of database: 14,309,454
effective search space: 4135432206
effective search space used: 4135432206
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 63 (28.9 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.