Guide to the Human Genome
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Search of human proteins with 21361870

BLASTP 2.2.11 [Jun-05-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|21361870 chromosome 11 open reading frame 17 [Homo sapiens]
         (210 letters)

Database: hs.faa 
           37,866 sequences; 18,247,518 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|21361870 chromosome 11 open reading frame 17 [Homo sapiens]        427   e-120
gi|116174740 chromosome 11 open reading frame 17 [Homo sapiens]       427   e-120
gi|63055059 SH3 and PX domains 2B [Homo sapiens]                       33   0.13 
gi|197383784 zinc finger protein 213 [Homo sapiens]                    33   0.18 
gi|32698678 zinc finger protein 213 [Homo sapiens]                     33   0.18 
gi|5032031 RNA binding motif protein 5 [Homo sapiens]                  31   0.87 
gi|55741661 hypothetical protein LOC57653 [Homo sapiens]               30   1.1  
gi|4507963 zinc finger protein 37 homolog [Homo sapiens]               30   1.5  
gi|11321642 bromodomain containing protein 1 [Homo sapiens]            30   1.9  
gi|239747893 PREDICTED: zinc finger protein 806 [Homo sapiens]         29   2.5  
gi|22035600 mitogen-activated protein kinase kinase kinase kinas...    29   2.5  
gi|110349775 zinc finger protein 12 isoform b [Homo sapiens]           29   3.3  
gi|66348108 zinc finger protein 12 isoform a [Homo sapiens]            29   3.3  
gi|51172610 Rho guanine nucleotide exchange factor (GEF) 5-like ...    28   4.3  
gi|50959191 rho guanine nucleotide exchange factor 5 [Homo sapiens]    28   4.3  
gi|195972857 Rho/Rac guanine nucleotide exchange factor 18 isofo...    28   5.6  
gi|41327769 Rho/Rac guanine nucleotide exchange factor 18 isofor...    28   5.6  
gi|239758117 PREDICTED: hypothetical protein [Homo sapiens]            28   5.6  
gi|194018469 zinc finger protein 546 [Homo sapiens]                    28   5.6  
gi|57863253 zinc finger protein 500 [Homo sapiens]                     28   7.4  
gi|14249570 hypothetical protein LOC84934 [Homo sapiens]               28   7.4  
gi|110349786 Alstrom syndrome 1 [Homo sapiens]                         27   9.6  
gi|169217788 PREDICTED: similar to putative DUX4 protein [Homo s...    27   9.6  
gi|89062404 PREDICTED: similar to putative DUX4 protein [Homo sa...    27   9.6  
gi|4507987 zinc finger protein 136 [Homo sapiens]                      27   9.6  

>gi|21361870 chromosome 11 open reading frame 17 [Homo sapiens]
          Length = 210

 Score =  427 bits (1097), Expect = e-120
 Identities = 210/210 (100%), Positives = 210/210 (100%)

Query: 1   MDNCLAAAALNGVDRRSLQRSARLALEVLERAKRRAVDWHALERPKGCMGVLAREAPHLE 60
           MDNCLAAAALNGVDRRSLQRSARLALEVLERAKRRAVDWHALERPKGCMGVLAREAPHLE
Sbjct: 1   MDNCLAAAALNGVDRRSLQRSARLALEVLERAKRRAVDWHALERPKGCMGVLAREAPHLE 60

Query: 61  KQPAAGPQRVLPGEREERPPTLSASFRTMAEFMDYTSSQCGKYYSSVPEEGGATHVYRYH 120
           KQPAAGPQRVLPGEREERPPTLSASFRTMAEFMDYTSSQCGKYYSSVPEEGGATHVYRYH
Sbjct: 61  KQPAAGPQRVLPGEREERPPTLSASFRTMAEFMDYTSSQCGKYYSSVPEEGGATHVYRYH 120

Query: 121 RGESKLHMCLDIGNGQRKDRKKTSLGPGGSYQISEHAPEASQPAENISKDLYIEVYPGTY 180
           RGESKLHMCLDIGNGQRKDRKKTSLGPGGSYQISEHAPEASQPAENISKDLYIEVYPGTY
Sbjct: 121 RGESKLHMCLDIGNGQRKDRKKTSLGPGGSYQISEHAPEASQPAENISKDLYIEVYPGTY 180

Query: 181 SVTVGSNDLTKKTHVVAVDSGQSVDLVFPV 210
           SVTVGSNDLTKKTHVVAVDSGQSVDLVFPV
Sbjct: 181 SVTVGSNDLTKKTHVVAVDSGQSVDLVFPV 210


>gi|116174740 chromosome 11 open reading frame 17 [Homo sapiens]
          Length = 210

 Score =  427 bits (1097), Expect = e-120
 Identities = 210/210 (100%), Positives = 210/210 (100%)

Query: 1   MDNCLAAAALNGVDRRSLQRSARLALEVLERAKRRAVDWHALERPKGCMGVLAREAPHLE 60
           MDNCLAAAALNGVDRRSLQRSARLALEVLERAKRRAVDWHALERPKGCMGVLAREAPHLE
Sbjct: 1   MDNCLAAAALNGVDRRSLQRSARLALEVLERAKRRAVDWHALERPKGCMGVLAREAPHLE 60

Query: 61  KQPAAGPQRVLPGEREERPPTLSASFRTMAEFMDYTSSQCGKYYSSVPEEGGATHVYRYH 120
           KQPAAGPQRVLPGEREERPPTLSASFRTMAEFMDYTSSQCGKYYSSVPEEGGATHVYRYH
Sbjct: 61  KQPAAGPQRVLPGEREERPPTLSASFRTMAEFMDYTSSQCGKYYSSVPEEGGATHVYRYH 120

Query: 121 RGESKLHMCLDIGNGQRKDRKKTSLGPGGSYQISEHAPEASQPAENISKDLYIEVYPGTY 180
           RGESKLHMCLDIGNGQRKDRKKTSLGPGGSYQISEHAPEASQPAENISKDLYIEVYPGTY
Sbjct: 121 RGESKLHMCLDIGNGQRKDRKKTSLGPGGSYQISEHAPEASQPAENISKDLYIEVYPGTY 180

Query: 181 SVTVGSNDLTKKTHVVAVDSGQSVDLVFPV 210
           SVTVGSNDLTKKTHVVAVDSGQSVDLVFPV
Sbjct: 181 SVTVGSNDLTKKTHVVAVDSGQSVDLVFPV 210


>gi|63055059 SH3 and PX domains 2B [Homo sapiens]
          Length = 911

 Score = 33.5 bits (75), Expect = 0.13
 Identities = 42/146 (28%), Positives = 64/146 (43%), Gaps = 14/146 (9%)

Query: 35  RAVDWHALERPKGCMGVLAREAPHLEKQPAAGPQRVLPGEREERPPTLSASFRTMAEFMD 94
           + +   A  RP      +++  P +  Q A   + V+P  R   P   S+S R + E   
Sbjct: 722 KEISCRAPPRPAKTTDPVSKSVP-VPLQEAPQQRPVVPPRRPPPPKKTSSSSRPLPEVR- 779

Query: 95  YTSSQCGKYYS-SVPEEGGATHVYRYHRGESKLHMCLDIGNGQRKDRKKTSLGPGGSYQI 153
               QC  + S + P  G A  V      ++K  +   +G GQ   R K SLGP G+ +I
Sbjct: 780 --GPQCEGHESRAAPTPGRALLV----PPKAKPFLSNSLG-GQDDTRGKGSLGPWGTGKI 832

Query: 154 SEH---APEASQP-AENISKDLYIEV 175
            E+   A  AS P A+ +   LY+ V
Sbjct: 833 GENREKAAAASVPNADGLKDSLYVAV 858


>gi|197383784 zinc finger protein 213 [Homo sapiens]
          Length = 459

 Score = 33.1 bits (74), Expect = 0.18
 Identities = 28/75 (37%), Positives = 35/75 (46%), Gaps = 5/75 (6%)

Query: 55  EAPHLEKQPAAGPQRVLPGEREERPPTLSASFRTMAEFMDYTSSQCGKYYSSVPEEGGAT 114
           EA   E +P A    V+ G R  RPPT    FR +A    ++  QCGK +    +   A 
Sbjct: 278 EAWESENRPRAALGPVV-GARRGRPPTRRRQFRDLAAEKPHSCGQCGKRFRWGSDL--AR 334

Query: 115 HVYRYHRGESKLHMC 129
           H  R H GE K H C
Sbjct: 335 H-QRTHTGE-KPHKC 347


>gi|32698678 zinc finger protein 213 [Homo sapiens]
          Length = 459

 Score = 33.1 bits (74), Expect = 0.18
 Identities = 28/75 (37%), Positives = 35/75 (46%), Gaps = 5/75 (6%)

Query: 55  EAPHLEKQPAAGPQRVLPGEREERPPTLSASFRTMAEFMDYTSSQCGKYYSSVPEEGGAT 114
           EA   E +P A    V+ G R  RPPT    FR +A    ++  QCGK +    +   A 
Sbjct: 278 EAWESENRPRAALGPVV-GARRGRPPTRRRQFRDLAAEKPHSCGQCGKRFRWGSDL--AR 334

Query: 115 HVYRYHRGESKLHMC 129
           H  R H GE K H C
Sbjct: 335 H-QRTHTGE-KPHKC 347


>gi|5032031 RNA binding motif protein 5 [Homo sapiens]
          Length = 815

 Score = 30.8 bits (68), Expect = 0.87
 Identities = 27/111 (24%), Positives = 48/111 (43%), Gaps = 9/111 (8%)

Query: 63  PAAGPQRVLPGEREERPPTLSASFRTMAEFMDYTSSQCGKYY--SSVPEEGGATHVYRYH 120
           PAA P  V+PG +   P T +  +   + +  Y     G YY  +S       T  Y Y 
Sbjct: 441 PAASPTGVVPGTKYAVPDTSTYQYDESSGY--YYDPTTGLYYDPNSQYYYNSLTQQYLYW 498

Query: 121 RGESKLHMCLDIGNGQRKDRKKTSLGPGGSYQISEHAPEASQPAENISKDL 171
            GE + +    +   +    +++ L P    +  +  P+ S+ A+ I+KD+
Sbjct: 499 DGEKETY----VPAAESSSHQQSGLPPAKEGKEKKEKPK-SKTAQQIAKDM 544


>gi|55741661 hypothetical protein LOC57653 [Homo sapiens]
          Length = 1646

 Score = 30.4 bits (67), Expect = 1.1
 Identities = 30/117 (25%), Positives = 48/117 (41%), Gaps = 16/117 (13%)

Query: 29  LERAKRRAVDWHALERPKGCMGVLAREAPHLEKQPAAGPQRVLPGEREERPPTLSASFRT 88
           ++  K++ +DW A             EA  L  Q        L G+ EE    L  SF T
Sbjct: 595 VQNCKKQLLDWKAFTE---------EEAETLVNQFFFQMVGALQGKVEEDLELLDKSFET 645

Query: 89  MAEFMDYTSSQCGKYYSSVPEEGGATHVYRYHRGESKLHMCLDIGNGQRKDRKKTSL 145
           +A+  ++ SS   KY+  V        ++  H+ E  L   L++     + R+K SL
Sbjct: 646 LADQTEWQSSHLFKYFQEV------VQLWEAHQSE-LLVQELELEKRMEQHRQKHSL 695


>gi|4507963 zinc finger protein 37 homolog [Homo sapiens]
          Length = 630

 Score = 30.0 bits (66), Expect = 1.5
 Identities = 22/68 (32%), Positives = 33/68 (48%), Gaps = 7/68 (10%)

Query: 69  RVLPGEREERPPTLSASF---RTMAEFMDYTSSQCGKYYSSVPEEGGATHVYRYHRGESK 125
           ++  GE+ E+ P+LS+S    +  A    Y  +QCGK  S    + G     R H GE K
Sbjct: 264 KIQTGEKHEKSPSLSSSTKHEKPQACVKPYECNQCGKVLS---HKQGLIDHQRVHTGE-K 319

Query: 126 LHMCLDIG 133
            + C + G
Sbjct: 320 PYECNECG 327


>gi|11321642 bromodomain containing protein 1 [Homo sapiens]
          Length = 1058

 Score = 29.6 bits (65), Expect = 1.9
 Identities = 26/78 (33%), Positives = 35/78 (44%), Gaps = 10/78 (12%)

Query: 1   MDNCLAAAALNGVDRRSLQRSARLALEVLERAKRRAVDWHALERPKGCMGVLAREAPHLE 60
           +DNC+   A + V  R+  R       VL +A RR VD   LE   G          HL 
Sbjct: 635 IDNCMKYNARDTVFYRAAVRLRDQGGVVLRQA-RREVDSIGLEEASGM---------HLP 684

Query: 61  KQPAAGPQRVLPGEREER 78
           ++PAA P+R    E  +R
Sbjct: 685 ERPAAAPRRPFSWEDVDR 702


>gi|239747893 PREDICTED: zinc finger protein 806 [Homo sapiens]
          Length = 589

 Score = 29.3 bits (64), Expect = 2.5
 Identities = 22/64 (34%), Positives = 30/64 (46%), Gaps = 6/64 (9%)

Query: 73  GEREERPPTLSASFRTMAEFMDYTSSQCGKYYSSVPEEGGATHV-YRYHRGESKLHMCLD 131
           G+R E+   L    R       Y SS+CGK +SS         V +R+H GE K + C +
Sbjct: 377 GKRFEQSSNLLIHQRVHTGGKPYKSSECGKCFSS----SSVLQVHWRFHTGE-KPYRCGE 431

Query: 132 IGNG 135
            G G
Sbjct: 432 CGKG 435


>gi|22035600 mitogen-activated protein kinase kinase kinase kinase 2
           [Homo sapiens]
          Length = 820

 Score = 29.3 bits (64), Expect = 2.5
 Identities = 27/94 (28%), Positives = 39/94 (41%), Gaps = 11/94 (11%)

Query: 17  SLQRSARLALEVLERAKRRAVDWHALERPKGCMGVLAREAPHL--------EKQPAAGPQ 68
           SL +S + ALE      R A ++  L+ P   MG + R AP L         ++P + P 
Sbjct: 367 SLLQSVQEALEERSLTIRSASEFQELDSPDDTMGTIKR-APFLGPLPTDPPAEEPLSSPP 425

Query: 69  RVL--PGEREERPPTLSASFRTMAEFMDYTSSQC 100
             L  P       P L  ++ TM +  D   S C
Sbjct: 426 GTLPPPPSGPNSSPLLPTAWATMKQREDPERSSC 459


>gi|110349775 zinc finger protein 12 isoform b [Homo sapiens]
          Length = 659

 Score = 28.9 bits (63), Expect = 3.3
 Identities = 19/56 (33%), Positives = 27/56 (48%), Gaps = 4/56 (7%)

Query: 78  RPPTLSASFRTMAEFMDYTSSQCGKYYSSVPEEGGATHVYRYHRGESKLHMCLDIG 133
           R  TL+   RT      Y  ++CGK++S +      T  YR H GE K + C + G
Sbjct: 382 RKSTLTTHLRTHTGEKPYECNECGKFFSRL---SYLTVHYRTHSGE-KPYECNECG 433


>gi|66348108 zinc finger protein 12 isoform a [Homo sapiens]
          Length = 697

 Score = 28.9 bits (63), Expect = 3.3
 Identities = 19/56 (33%), Positives = 27/56 (48%), Gaps = 4/56 (7%)

Query: 78  RPPTLSASFRTMAEFMDYTSSQCGKYYSSVPEEGGATHVYRYHRGESKLHMCLDIG 133
           R  TL+   RT      Y  ++CGK++S +      T  YR H GE K + C + G
Sbjct: 420 RKSTLTTHLRTHTGEKPYECNECGKFFSRL---SYLTVHYRTHSGE-KPYECNECG 471


>gi|51172610 Rho guanine nucleotide exchange factor (GEF) 5-like
           [Homo sapiens]
          Length = 484

 Score = 28.5 bits (62), Expect = 4.3
 Identities = 15/50 (30%), Positives = 28/50 (56%)

Query: 154 SEHAPEASQPAENISKDLYIEVYPGTYSVTVGSNDLTKKTHVVAVDSGQS 203
           SEH   A   ++  S++  +E +PG  S+T+GS    ++    + +SGQ+
Sbjct: 131 SEHLDMAPFSSDLGSEEEEVEFWPGLTSLTLGSGQAEEEEETSSDNSGQT 180


>gi|50959191 rho guanine nucleotide exchange factor 5 [Homo sapiens]
          Length = 1597

 Score = 28.5 bits (62), Expect = 4.3
 Identities = 15/50 (30%), Positives = 28/50 (56%)

Query: 154 SEHAPEASQPAENISKDLYIEVYPGTYSVTVGSNDLTKKTHVVAVDSGQS 203
           SEH   A   ++  S++  +E +PG  S+T+GS    ++    + +SGQ+
Sbjct: 131 SEHLDMAPFSSDLGSEEEEVEFWPGLTSLTLGSGQAEEEEETSSDNSGQT 180


>gi|195972857 Rho/Rac guanine nucleotide exchange factor 18 isoform
           b [Homo sapiens]
          Length = 1173

 Score = 28.1 bits (61), Expect = 5.6
 Identities = 25/87 (28%), Positives = 33/87 (37%), Gaps = 6/87 (6%)

Query: 6   AAAALNGVDRRSLQRSARLALEVLERAKRRAVDWHALERPKGCMGVLAREAPHLEKQPAA 65
           A A L   +  + Q   RL  E  E  ++R    H LER +     + RE   LE     
Sbjct: 896 AGARLQEREGEARQLRERLEQERAELERQRQAYQHDLERLREAQRAVERERERLELLRRL 955

Query: 66  GPQRVLPGE------REERPPTLSASF 86
             Q   PG        E +PP+   SF
Sbjct: 956 KKQNTAPGALPPDTLAEAQPPSHPPSF 982


>gi|41327769 Rho/Rac guanine nucleotide exchange factor 18 isoform a
           [Homo sapiens]
          Length = 1015

 Score = 28.1 bits (61), Expect = 5.6
 Identities = 25/87 (28%), Positives = 33/87 (37%), Gaps = 6/87 (6%)

Query: 6   AAAALNGVDRRSLQRSARLALEVLERAKRRAVDWHALERPKGCMGVLAREAPHLEKQPAA 65
           A A L   +  + Q   RL  E  E  ++R    H LER +     + RE   LE     
Sbjct: 738 AGARLQEREGEARQLRERLEQERAELERQRQAYQHDLERLREAQRAVERERERLELLRRL 797

Query: 66  GPQRVLPGE------REERPPTLSASF 86
             Q   PG        E +PP+   SF
Sbjct: 798 KKQNTAPGALPPDTLAEAQPPSHPPSF 824


>gi|239758117 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 465

 Score = 28.1 bits (61), Expect = 5.6
 Identities = 18/58 (31%), Positives = 26/58 (44%)

Query: 14  DRRSLQRSARLALEVLERAKRRAVDWHALERPKGCMGVLAREAPHLEKQPAAGPQRVL 71
           D R    +A L L    RA+RR++   A +      G L +E P  E    + P+R L
Sbjct: 69  DSRVTPATALLLLSHRGRAQRRSIQAAAAQEQSTGRGCLGKEPPSQESWTRSDPRRCL 126


>gi|194018469 zinc finger protein 546 [Homo sapiens]
          Length = 836

 Score = 28.1 bits (61), Expect = 5.6
 Identities = 19/56 (33%), Positives = 26/56 (46%), Gaps = 4/56 (7%)

Query: 82  LSASFRTMAEFMDYTSSQCGKYYSSVPEEGGATHVYRYHRGESKLHMCLDIGNGQR 137
           L+   RT    + Y   +CGK +SS       T  YR H GE K ++C + G   R
Sbjct: 484 LTLHLRTHTGEIPYECKECGKTFSS---RYHLTQHYRIHTGE-KPYICNECGKAFR 535


>gi|57863253 zinc finger protein 500 [Homo sapiens]
          Length = 480

 Score = 27.7 bits (60), Expect = 7.4
 Identities = 33/134 (24%), Positives = 53/134 (39%), Gaps = 22/134 (16%)

Query: 40  HALERPKGCM----------GVLAREAPHLEKQPAAGPQRVLPGEREERPPTLSASFRTM 89
           H  ERP  C+               +  H  ++P   P+    G+R  +  +L    RT 
Sbjct: 347 HTGERPYKCLVCGKGFSDRSNFSTHQRVHTGEKPYPCPEC---GKRFSQSSSLVIHRRTH 403

Query: 90  AEFMDYTSSQCGKYYSSVPEEGGATHVYRYHRGESKLHMCLDIGNGQRK-----DRKKTS 144
           +    Y  +QCGK +++      + H  R H GE K + C   G G R+       ++T 
Sbjct: 404 SGERPYACTQCGKRFNN--SSHFSAH-RRTHTGE-KPYTCPACGRGFRRGTDLHKHQRTH 459

Query: 145 LGPGGSYQISEHAP 158
           +G G    +   AP
Sbjct: 460 MGAGSLPTLQPVAP 473


>gi|14249570 hypothetical protein LOC84934 [Homo sapiens]
          Length = 269

 Score = 27.7 bits (60), Expect = 7.4
 Identities = 17/44 (38%), Positives = 21/44 (47%), Gaps = 1/44 (2%)

Query: 30  ERAKRRAVDWHALERPKGCMGVLAREAPHLEKQPAAGPQRVLPG 73
           + AK RA+ W     P+G      REAP     P AGP +  PG
Sbjct: 133 DAAKLRALLWTPPPTPRGSHSPRPREAPLRAIHP-AGPSKTEPG 175


>gi|110349786 Alstrom syndrome 1 [Homo sapiens]
          Length = 4169

 Score = 27.3 bits (59), Expect = 9.6
 Identities = 16/57 (28%), Positives = 26/57 (45%), Gaps = 6/57 (10%)

Query: 46   KGCMGVLAREAPHLEKQP----AAGPQRVLPGEREERPPTLSASFRTMAEFMDYTSS 98
            KGC   L  E P L++ P    +AGP  +  G   + P +  A    ++  +D  +S
Sbjct: 2585 KGCFRTLTSEHPQLDRHPCAFRSAGPSEMTRG--RQNPSSCRAKHVNLSASLDQNNS 2639


>gi|169217788 PREDICTED: similar to putative DUX4 protein [Homo
           sapiens]
          Length = 422

 Score = 27.3 bits (59), Expect = 9.6
 Identities = 27/113 (23%), Positives = 42/113 (37%), Gaps = 18/113 (15%)

Query: 57  PHLEKQPAAGPQRVLPGEREERPPTLSASFRTMAEFMDYTSSQCGK--YYSSVPEEGGAT 114
           P++   P A PQ     +     P L AS    AE +   +   G   Y +  P EG  +
Sbjct: 193 PYVPGAPGALPQGAFMSQGARAVPVLQASLAMPAEGISQPAPARGDFLYATPTPPEGALS 252

Query: 115 HV----YRYHRGESKLHMCLDIGNGQRKDRKKTSLGPGGSYQISEHAPEASQP 163
           H     +  H G+S            R+DR+    G  G   + +  P  ++P
Sbjct: 253 HPQAPRWPAHPGKS------------REDRELQLDGLPGPCTVGQPGPAQARP 293


>gi|89062404 PREDICTED: similar to putative DUX4 protein [Homo
           sapiens]
          Length = 422

 Score = 27.3 bits (59), Expect = 9.6
 Identities = 27/113 (23%), Positives = 42/113 (37%), Gaps = 18/113 (15%)

Query: 57  PHLEKQPAAGPQRVLPGEREERPPTLSASFRTMAEFMDYTSSQCGK--YYSSVPEEGGAT 114
           P++   P A PQ     +     P L AS    AE +   +   G   Y +  P EG  +
Sbjct: 193 PYVPGAPGALPQGAFMSQGARAVPVLQASLAMPAEGISQPAPARGDFLYATPTPPEGALS 252

Query: 115 HV----YRYHRGESKLHMCLDIGNGQRKDRKKTSLGPGGSYQISEHAPEASQP 163
           H     +  H G+S            R+DR+    G  G   + +  P  ++P
Sbjct: 253 HPQAPRWPAHPGKS------------REDRELQLDGLPGPCTVGQPGPAQARP 293


>gi|4507987 zinc finger protein 136 [Homo sapiens]
          Length = 540

 Score = 27.3 bits (59), Expect = 9.6
 Identities = 25/86 (29%), Positives = 31/86 (36%), Gaps = 13/86 (15%)

Query: 80  PTLSASFRTMAEFMDYTSSQCGKYYSSVPEEGGATHVYRYHRGESKLHMCLDIGNGQRKD 139
           PTL    RT      Y   QCGK +S +P         R H GE K  +C   G   R  
Sbjct: 293 PTLRIHERTHTGEKPYECKQCGKAFSYLP---SLRLHERIHTGE-KPFVCKQCGKAFRS- 347

Query: 140 RKKTSLGPGGSYQISEHAPEASQPAE 165
                     ++QI E      +P E
Sbjct: 348 --------ASTFQIHERTHTGEKPYE 365


  Database: hs.faa
    Posted date:  Aug 4, 2009  4:42 PM
  Number of letters in database: 18,247,518
  Number of sequences in database:  37,866
  
Lambda     K      H
   0.315    0.131    0.384 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,921,175
Number of Sequences: 37866
Number of extensions: 439292
Number of successful extensions: 1020
Number of sequences better than 10.0: 25
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 18
Number of HSP's that attempted gapping in prelim test: 1009
Number of HSP's gapped (non-prelim): 29
length of query: 210
length of database: 18,247,518
effective HSP length: 98
effective length of query: 112
effective length of database: 14,536,650
effective search space: 1628104800
effective search space used: 1628104800
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 59 (27.3 bits)

Search results were obtained with NCBI BLAST and RefSeq entries.


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Guide to the Human Genome
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