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Search of human proteins with 21361809
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|21361809 RNA binding motif protein, X-linked-like 1 [Homo
sapiens]
(390 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|242117971 RNA binding motif protein, X-linked-like 1 [Homo sa... 814 0.0
gi|21361809 RNA binding motif protein, X-linked-like 1 [Homo sap... 814 0.0
gi|56699409 RNA binding motif protein, X-linked [Homo sapiens] 768 0.0
gi|153252068 testes-specific heterogenous nuclear ribonucleoprot... 522 e-148
gi|54633344 RNA binding motif protein, Y-linked, family 1, membe... 338 4e-93
gi|56090533 RNA binding motif protein, Y-linked, family 1, membe... 338 4e-93
gi|4826974 RNA binding motif protein, Y-linked, family 1, member... 338 5e-93
gi|34303937 RNA binding motif protein, Y-linked, family 1, membe... 338 6e-93
gi|56090529 RNA binding motif protein, Y-linked, family 1, membe... 338 6e-93
gi|56090527 RNA binding motif protein, Y-linked, family 1, membe... 337 8e-93
gi|223890219 RNA binding motif protein, X-linked-like 3 [Homo sa... 296 2e-80
gi|239752336 PREDICTED: similar to RNA binding motif protein, X-... 230 1e-60
gi|239746849 PREDICTED: hypothetical protein XP_002343863 [Homo ... 230 1e-60
gi|239757825 PREDICTED: hypothetical protein XP_002346350 [Homo ... 167 2e-41
gi|4502847 cold inducible RNA binding protein [Homo sapiens] 124 2e-28
gi|5803137 RNA binding motif protein 3 [Homo sapiens] 105 9e-23
gi|4507353 TBP-associated factor 15 isoform 2 [Homo sapiens] 99 9e-21
gi|21327701 TBP-associated factor 15 isoform 1 [Homo sapiens] 99 9e-21
gi|156151396 heterogeneous nuclear ribonucleoprotein R isoform 3... 86 6e-17
gi|156151394 heterogeneous nuclear ribonucleoprotein R isoform 1... 86 6e-17
gi|156151392 heterogeneous nuclear ribonucleoprotein R isoform 4... 86 6e-17
gi|5031755 heterogeneous nuclear ribonucleoprotein R isoform 2 [... 86 6e-17
gi|15055543 splicing factor, arginine/serine-rich 2B [Homo sapiens] 86 6e-17
gi|47271443 splicing factor, arginine/serine-rich 2 [Homo sapiens] 82 8e-16
gi|25470886 DAZ associated protein 1 isoform b [Homo sapiens] 81 2e-15
gi|9558733 transformer-2 alpha [Homo sapiens] 80 4e-15
gi|14043070 heterogeneous nuclear ribonucleoprotein A1 isoform b... 79 5e-15
gi|34740329 heterogeneous nuclear ribonucleoprotein A3 [Homo sap... 78 1e-14
gi|4504445 heterogeneous nuclear ribonucleoprotein A1 isoform a ... 75 1e-13
gi|25470890 DAZ associated protein 1 isoform a [Homo sapiens] 74 2e-13
>gi|242117971 RNA binding motif protein, X-linked-like 1 [Homo
sapiens]
Length = 390
Score = 814 bits (2102), Expect = 0.0
Identities = 390/390 (100%), Positives = 390/390 (100%)
Query: 1 MVEADRPGKLFIGGLNTETNEKALETVFGKYGRIVEVLLIKDRETNKSRGFAFVTFESPA 60
MVEADRPGKLFIGGLNTETNEKALETVFGKYGRIVEVLLIKDRETNKSRGFAFVTFESPA
Sbjct: 1 MVEADRPGKLFIGGLNTETNEKALETVFGKYGRIVEVLLIKDRETNKSRGFAFVTFESPA 60
Query: 61 DAKDAARDMNGKSLDGKAIKVEQATKPSFERGRHGPPPPPRSRGPPRGFGAGRGGSGGTR 120
DAKDAARDMNGKSLDGKAIKVEQATKPSFERGRHGPPPPPRSRGPPRGFGAGRGGSGGTR
Sbjct: 61 DAKDAARDMNGKSLDGKAIKVEQATKPSFERGRHGPPPPPRSRGPPRGFGAGRGGSGGTR 120
Query: 121 GPPSRGGHMDDGGYSMNFNMSSSRGPLPVKRGPPPRSGGPSPKRSAPSGLVRSSSGMGGR 180
GPPSRGGHMDDGGYSMNFNMSSSRGPLPVKRGPPPRSGGPSPKRSAPSGLVRSSSGMGGR
Sbjct: 121 GPPSRGGHMDDGGYSMNFNMSSSRGPLPVKRGPPPRSGGPSPKRSAPSGLVRSSSGMGGR 180
Query: 181 APLSRGRDSYGGPPRREPLPSRRDVYLSPRDDGYSTKDSYSSRDYPSSRDTRDYAPPPRD 240
APLSRGRDSYGGPPRREPLPSRRDVYLSPRDDGYSTKDSYSSRDYPSSRDTRDYAPPPRD
Sbjct: 181 APLSRGRDSYGGPPRREPLPSRRDVYLSPRDDGYSTKDSYSSRDYPSSRDTRDYAPPPRD 240
Query: 241 YTYRDYGHSSSRDDYPSRGYGDRDGYGRDRDYSDHPSGGSYRDSYESYGNSRSAPLTRGP 300
YTYRDYGHSSSRDDYPSRGYGDRDGYGRDRDYSDHPSGGSYRDSYESYGNSRSAPLTRGP
Sbjct: 241 YTYRDYGHSSSRDDYPSRGYGDRDGYGRDRDYSDHPSGGSYRDSYESYGNSRSAPLTRGP 300
Query: 301 PPSYGGSSRYDDYSSSRDGYGGSRDSYSSSRSDLYSSCDRVGRQERGLPPSVERGYPSSR 360
PPSYGGSSRYDDYSSSRDGYGGSRDSYSSSRSDLYSSCDRVGRQERGLPPSVERGYPSSR
Sbjct: 301 PPSYGGSSRYDDYSSSRDGYGGSRDSYSSSRSDLYSSCDRVGRQERGLPPSVERGYPSSR 360
Query: 361 DSYSSSSRGAPRGAGPGGSRSDRGGGRSRY 390
DSYSSSSRGAPRGAGPGGSRSDRGGGRSRY
Sbjct: 361 DSYSSSSRGAPRGAGPGGSRSDRGGGRSRY 390
>gi|21361809 RNA binding motif protein, X-linked-like 1 [Homo
sapiens]
Length = 390
Score = 814 bits (2102), Expect = 0.0
Identities = 390/390 (100%), Positives = 390/390 (100%)
Query: 1 MVEADRPGKLFIGGLNTETNEKALETVFGKYGRIVEVLLIKDRETNKSRGFAFVTFESPA 60
MVEADRPGKLFIGGLNTETNEKALETVFGKYGRIVEVLLIKDRETNKSRGFAFVTFESPA
Sbjct: 1 MVEADRPGKLFIGGLNTETNEKALETVFGKYGRIVEVLLIKDRETNKSRGFAFVTFESPA 60
Query: 61 DAKDAARDMNGKSLDGKAIKVEQATKPSFERGRHGPPPPPRSRGPPRGFGAGRGGSGGTR 120
DAKDAARDMNGKSLDGKAIKVEQATKPSFERGRHGPPPPPRSRGPPRGFGAGRGGSGGTR
Sbjct: 61 DAKDAARDMNGKSLDGKAIKVEQATKPSFERGRHGPPPPPRSRGPPRGFGAGRGGSGGTR 120
Query: 121 GPPSRGGHMDDGGYSMNFNMSSSRGPLPVKRGPPPRSGGPSPKRSAPSGLVRSSSGMGGR 180
GPPSRGGHMDDGGYSMNFNMSSSRGPLPVKRGPPPRSGGPSPKRSAPSGLVRSSSGMGGR
Sbjct: 121 GPPSRGGHMDDGGYSMNFNMSSSRGPLPVKRGPPPRSGGPSPKRSAPSGLVRSSSGMGGR 180
Query: 181 APLSRGRDSYGGPPRREPLPSRRDVYLSPRDDGYSTKDSYSSRDYPSSRDTRDYAPPPRD 240
APLSRGRDSYGGPPRREPLPSRRDVYLSPRDDGYSTKDSYSSRDYPSSRDTRDYAPPPRD
Sbjct: 181 APLSRGRDSYGGPPRREPLPSRRDVYLSPRDDGYSTKDSYSSRDYPSSRDTRDYAPPPRD 240
Query: 241 YTYRDYGHSSSRDDYPSRGYGDRDGYGRDRDYSDHPSGGSYRDSYESYGNSRSAPLTRGP 300
YTYRDYGHSSSRDDYPSRGYGDRDGYGRDRDYSDHPSGGSYRDSYESYGNSRSAPLTRGP
Sbjct: 241 YTYRDYGHSSSRDDYPSRGYGDRDGYGRDRDYSDHPSGGSYRDSYESYGNSRSAPLTRGP 300
Query: 301 PPSYGGSSRYDDYSSSRDGYGGSRDSYSSSRSDLYSSCDRVGRQERGLPPSVERGYPSSR 360
PPSYGGSSRYDDYSSSRDGYGGSRDSYSSSRSDLYSSCDRVGRQERGLPPSVERGYPSSR
Sbjct: 301 PPSYGGSSRYDDYSSSRDGYGGSRDSYSSSRSDLYSSCDRVGRQERGLPPSVERGYPSSR 360
Query: 361 DSYSSSSRGAPRGAGPGGSRSDRGGGRSRY 390
DSYSSSSRGAPRGAGPGGSRSDRGGGRSRY
Sbjct: 361 DSYSSSSRGAPRGAGPGGSRSDRGGGRSRY 390
>gi|56699409 RNA binding motif protein, X-linked [Homo sapiens]
Length = 391
Score = 768 bits (1984), Expect = 0.0
Identities = 372/391 (95%), Positives = 375/391 (95%), Gaps = 1/391 (0%)
Query: 1 MVEADRPGKLFIGGLNTETNEKALETVFGKYGRIVEVLLIKDRETNKSRGFAFVTFESPA 60
MVEADRPGKLFIGGLNTETNEKALE VFGKYGRIVEVLL+KDRETNKSRGFAFVTFESPA
Sbjct: 1 MVEADRPGKLFIGGLNTETNEKALEAVFGKYGRIVEVLLMKDRETNKSRGFAFVTFESPA 60
Query: 61 DAKDAARDMNGKSLDGKAIKVEQATKPSFERGRHGPPPPPRSRGPPRGFGAGRGGSGGTR 120
DAKDAARDMNGKSLDGKAIKVEQATKPSFE GR GPPPPPRSRGPPRG GRGGSGGTR
Sbjct: 61 DAKDAARDMNGKSLDGKAIKVEQATKPSFESGRRGPPPPPRSRGPPRGLRGGRGGSGGTR 120
Query: 121 GPPSRGGHMDDGGYSMNFNMSSSRGPLPVKRGPPPRSGGPSPKRSAPSGLVRSSSGMGGR 180
GPPSRGGHMDDGGYSMNFNMSSSRGPLPVKRGPPPRSGGP PKRSAPSG VRSSSGMGGR
Sbjct: 121 GPPSRGGHMDDGGYSMNFNMSSSRGPLPVKRGPPPRSGGPPPKRSAPSGPVRSSSGMGGR 180
Query: 181 APLSRGRDSYGGPPRREPLPSRRDVYLSPRDDGYSTKDSYSSRDYPSSRDTRDYAPPPRD 240
AP+SRGRDSYGGPPRREPLPSRRDVYLSPRDDGYSTKDSYSSRDYPSSRDTRDYAPPPRD
Sbjct: 181 APVSRGRDSYGGPPRREPLPSRRDVYLSPRDDGYSTKDSYSSRDYPSSRDTRDYAPPPRD 240
Query: 241 YTYRDYGHSSSRDDYPSRGYGDRDGYGRDRDYSDHPSGGSYRDSYESYGNSRSAPLTRGP 300
YTYRDYGHSSSRDDYPSRGY DRDGYGRDRDYSDHPSGGSYRDSYESYGNSRSAP TRGP
Sbjct: 241 YTYRDYGHSSSRDDYPSRGYSDRDGYGRDRDYSDHPSGGSYRDSYESYGNSRSAPPTRGP 300
Query: 301 PPSYGGSSRYDDYSSSRDGYGGSRDSYSSSRSDLYSS-CDRVGRQERGLPPSVERGYPSS 359
PPSYGGSSRYDDYSSSRDGYGGSRDSYSSSRSDLYSS DRVGRQERGLPPS+ERGYP
Sbjct: 301 PPSYGGSSRYDDYSSSRDGYGGSRDSYSSSRSDLYSSGRDRVGRQERGLPPSMERGYPPP 360
Query: 360 RDSYSSSSRGAPRGAGPGGSRSDRGGGRSRY 390
RDSYSSSSRGAPRG G GGSRSDRGGGRSRY
Sbjct: 361 RDSYSSSSRGAPRGGGRGGSRSDRGGGRSRY 391
>gi|153252068 testes-specific heterogenous nuclear ribonucleoprotein
G-T [Homo sapiens]
Length = 392
Score = 522 bits (1345), Expect = e-148
Identities = 274/396 (69%), Positives = 299/396 (75%), Gaps = 10/396 (2%)
Query: 1 MVEADRPGKLFIGGLNTETNEKALETVFGKYGRIVEVLLIKDRETNKSRGFAFVTFESPA 60
MVEADRPGKLFIGGLN ET+EKALE FGKYGRIVEVLL+KDRETNKSRGFAFVTFESPA
Sbjct: 1 MVEADRPGKLFIGGLNLETDEKALEAEFGKYGRIVEVLLMKDRETNKSRGFAFVTFESPA 60
Query: 61 DAKDAARDMNGKSLDGKAIKVEQATKPSFERGRHGPPPPPRSRGPPRGFGAGRGGSGGTR 120
DAK AARDMNGKSLDGKAIKV QATKP+FE R G PPPPRSRG PR RGG GG R
Sbjct: 61 DAKAAARDMNGKSLDGKAIKVAQATKPAFESSRRG-PPPPRSRGRPRFLRGTRGGGGGPR 119
Query: 121 GPPSRGGHMDDGGYSMNFNMSSSRGPLPVKRGPPPRSGGPSPKRSAPSGLVRSS-SGMGG 179
PSRGG DDGGY+ +F++ SR P+P+KRGPPPR GP PKR+APSG RSS GM G
Sbjct: 120 RSPSRGGPDDDGGYTADFDLRPSRAPMPMKRGPPPRRVGPPPKRAAPSGPARSSGGGMRG 179
Query: 180 RAPLSRGRDSYGGPPRREPLPSRRDVYLSPRDDGYSTKDSYSSRDYPSSRDTRDYAPPPR 239
RA RGRD Y GPPRREPLP RRD YL PRD+GYS++D YSSRDY R+ R +AP P
Sbjct: 180 RALAVRGRDGYSGPPRREPLPPRRDPYLGPRDEGYSSRDGYSSRDY---REPRGFAPSPG 236
Query: 240 DYTYRDYGHSSSRDDYPSRGYGDRDGY-GRDRDYSDHPSGGSYRDSYESYGNSRSAPLTR 298
+YT+RDYGHSS RDD P RGY DRDGY GRDRDY DH S GS+R+ +ESYG R A R
Sbjct: 237 EYTHRDYGHSSVRDDCPLRGYSDRDGYGGRDRDYGDHLSRGSHREPFESYGELRGAAPGR 296
Query: 299 GPPPSYGGSSRYDDYSS-SRDGYGGSRDSYSSS--RSDLYS-SCDRVGRQERGLPPSVER 354
G PPSYGG RY++Y S D Y G RDSYSSS RSD YS RVGR +RGL S+ER
Sbjct: 297 GTPPSYGGGGRYEEYRGYSPDAYSGGRDSYSSSYGRSDRYSRGRHRVGRPDRGLSLSMER 356
Query: 355 GYPSSRDSYSSSSRGAPRGAGPGGSRSDRGGGRSRY 390
G P RDSYS S PRG G G R +RGGGRSRY
Sbjct: 357 GCPPQRDSYSRSGCRVPRGGGRLGGRLERGGGRSRY 392
>gi|54633344 RNA binding motif protein, Y-linked, family 1, member B
[Homo sapiens]
Length = 496
Score = 338 bits (868), Expect = 4e-93
Identities = 210/423 (49%), Positives = 256/423 (60%), Gaps = 51/423 (12%)
Query: 1 MVEADRPGKLFIGGLNTETNEKALETVFGKYGRIVEVLLIKDRETNKSRGFAFVTFESPA 60
MVEAD PGKLFIGGLN ETNEK L+ VFGK+G I EVLLIKDR T+KSRGFAF+TFE+PA
Sbjct: 1 MVEADHPGKLFIGGLNRETNEKMLKAVFGKHGPISEVLLIKDR-TSKSRGFAFITFENPA 59
Query: 61 DAKDAARDMNGKSLDGKAIKVEQATKPSFERG-RHGPPPPPRSRGPPRGFGAGRGGSGGT 119
DAK+AA+DMNGKSL GKAIKVEQA KPSF+ G R PP R+R P + RG GGT
Sbjct: 60 DAKNAAKDMNGKSLHGKAIKVEQAKKPSFQSGGRRRPPASSRNRSPSGSLRSARGSRGGT 119
Query: 120 RG-PPSRGGHMDDGGYSMNFNMSSSRGPLPVKRGPPPRSGGPSPKRSAPSGLVRSSSGMG 178
RG PS+ GH+DDGGY+ + MS SRG +PVKRGP RSGGP PK+SAPS + RS+S MG
Sbjct: 120 RGWLPSQEGHLDDGGYTPDLKMSYSRGLIPVKRGPSSRSGGPPPKKSAPSAVARSNSWMG 179
Query: 179 GRAPLSRGRDSYGGPPRREPLPSRRDVYLSPRDDGYSTKDSYSSRDYPSSRDTRDYAPPP 238
+ P+S+ R++YG PPRR + S R+ +S R DGY+T D ++PS ++TRDYAPP
Sbjct: 180 SQGPMSQRRENYGVPPRRATISSWRNDRMSTRHDGYATNDG----NHPSCQETRDYAPPS 235
Query: 239 RDYTYRDYGHSSSRDDYPSRGYGDRDGYGRDRDYSDHPSGGSYRD--------SY-ESYG 289
R Y YRD GH S+RD++ SRGY + RDY+ G +YRD SY Y
Sbjct: 236 RGYAYRDNGH-SNRDEHSSRGYRNHRSSRETRDYAPPSRGHAYRDYGHSRRDESYSRGYR 294
Query: 290 NSRSAPLTRG-PPPS-------YGGSSRYDDYSSSRDGYGGSRD---------------- 325
N RS+ TR PPS YG S R++ YS + SR+
Sbjct: 295 NRRSSRETREYAPPSRGHGYRDYGHSRRHESYSRGYRNHPSSRETRDYAPPHRDYAYRDY 354
Query: 326 ---SYSSSRSDLYSSCDRVGRQERGLPPSVERGYPSSRDSYS--SSSRGAPRGAGP---- 376
S+ S YS D G + G S S RD+ +S GAP GP
Sbjct: 355 GHSSWDEHSSRGYSYHDGYG-EALGRDHSEHLSGSSYRDALQRYGTSHGAPPARGPRMSY 413
Query: 377 GGS 379
GGS
Sbjct: 414 GGS 416
Score = 165 bits (418), Expect = 6e-41
Identities = 123/276 (44%), Positives = 154/276 (55%), Gaps = 19/276 (6%)
Query: 122 PPSRGGHMDDGGYSMNFNMSSSRGPLPVKRGPPPRSGGPSPKRSAPSGLVRSSSGMGGRA 181
PPSRG D G+S N + SSRG + R P + A R
Sbjct: 233 PPSRGYAYRDNGHS-NRDEHSSRGYRNHRSSRETRDYAPPSRGHA----YRDYGHSRRDE 287
Query: 182 PLSRG-RDSYGGPPRREPLP-SRRDVYLSPRDDGYSTK-DSYSS--RDYPSSRDTRDYAP 236
SRG R+ RE P SR Y RD G+S + +SYS R++PSSR+TRDYAP
Sbjct: 288 SYSRGYRNRRSSRETREYAPPSRGHGY---RDYGHSRRHESYSRGYRNHPSSRETRDYAP 344
Query: 237 PPRDYTYRDYGHSSSRDDYPSRGYGDRDGYGR--DRDYSDHPSGGSYRDSYESYGNSRSA 294
P RDY YRDYGHSS D++ SRGY DGYG RD+S+H SG SYRD+ + YG S A
Sbjct: 345 PHRDYAYRDYGHSSW-DEHSSRGYSYHDGYGEALGRDHSEHLSGSSYRDALQRYGTSHGA 403
Query: 295 PLTRGPPPSYGGSSRYDDYSSSRDGYGGSRDSYSSSRSDLYSSCDRVGRQERGLPPSVER 354
P RGP SYGGS+ + YS++RD YG S +SYSS Y + V R+++ PPS+ R
Sbjct: 404 PPARGPRMSYGGSTCH-AYSNTRDRYGRSWESYSSCGDFHYCDREHVCRKDQRNPPSLGR 462
Query: 355 GYPSSRDSYSSSSRGAPRGAGPGGSRSDRGGGRSRY 390
P R++Y SSS A G G SRS++G SRY
Sbjct: 463 VLPDPREAYGSSSYVASIVDG-GESRSEKGDS-SRY 496
>gi|56090533 RNA binding motif protein, Y-linked, family 1, member D
[Homo sapiens]
Length = 496
Score = 338 bits (868), Expect = 4e-93
Identities = 210/423 (49%), Positives = 256/423 (60%), Gaps = 51/423 (12%)
Query: 1 MVEADRPGKLFIGGLNTETNEKALETVFGKYGRIVEVLLIKDRETNKSRGFAFVTFESPA 60
MVEAD PGKLFIGGLN ETNEK L+ VFGK+G I EVLLIKDR T+KSRGFAF+TFE+PA
Sbjct: 1 MVEADHPGKLFIGGLNRETNEKMLKAVFGKHGPISEVLLIKDR-TSKSRGFAFITFENPA 59
Query: 61 DAKDAARDMNGKSLDGKAIKVEQATKPSFERG-RHGPPPPPRSRGPPRGFGAGRGGSGGT 119
DAK+AA+DMNGKSL GKAIKVEQA KPSF+ G R PP R+R P + RG GGT
Sbjct: 60 DAKNAAKDMNGKSLHGKAIKVEQAKKPSFQSGGRRRPPASSRNRSPSGSLRSARGSRGGT 119
Query: 120 RG-PPSRGGHMDDGGYSMNFNMSSSRGPLPVKRGPPPRSGGPSPKRSAPSGLVRSSSGMG 178
RG PS+ GH+DDGGY+ + MS SRG +PVKRGP RSGGP PK+SAPS + RS+S MG
Sbjct: 120 RGWLPSQEGHLDDGGYTPDLKMSYSRGLIPVKRGPSSRSGGPPPKKSAPSAVARSNSWMG 179
Query: 179 GRAPLSRGRDSYGGPPRREPLPSRRDVYLSPRDDGYSTKDSYSSRDYPSSRDTRDYAPPP 238
+ P+S+ R++YG PPRR + S R+ +S R DGY+T D ++PS ++TRDYAPP
Sbjct: 180 SQGPMSQRRENYGVPPRRATISSWRNDRMSTRHDGYATNDG----NHPSCQETRDYAPPS 235
Query: 239 RDYTYRDYGHSSSRDDYPSRGYGDRDGYGRDRDYSDHPSGGSYRD--------SY-ESYG 289
R Y YRD GH S+RD++ SRGY + RDY+ G +YRD SY Y
Sbjct: 236 RGYAYRDNGH-SNRDEHSSRGYRNHRSSRETRDYAPPSRGHAYRDYGHSRRDESYSRGYR 294
Query: 290 NSRSAPLTRG-PPPS-------YGGSSRYDDYSSSRDGYGGSRD---------------- 325
N RS+ TR PPS YG S R++ YS + SR+
Sbjct: 295 NRRSSRETREYAPPSRGHGYRDYGHSRRHESYSRGYRNHPSSRETRDYAPPHRDYAYRDY 354
Query: 326 ---SYSSSRSDLYSSCDRVGRQERGLPPSVERGYPSSRDSYS--SSSRGAPRGAGP---- 376
S+ S YS D G + G S S RD+ +S GAP GP
Sbjct: 355 GHSSWDEHSSRGYSYHDGYG-EALGRDHSEHLSGSSYRDALQRYGTSHGAPPARGPRMSY 413
Query: 377 GGS 379
GGS
Sbjct: 414 GGS 416
Score = 162 bits (409), Expect = 6e-40
Identities = 122/276 (44%), Positives = 153/276 (55%), Gaps = 19/276 (6%)
Query: 122 PPSRGGHMDDGGYSMNFNMSSSRGPLPVKRGPPPRSGGPSPKRSAPSGLVRSSSGMGGRA 181
PPSRG D G+S N + SSRG + R P + A R
Sbjct: 233 PPSRGYAYRDNGHS-NRDEHSSRGYRNHRSSRETRDYAPPSRGHA----YRDYGHSRRDE 287
Query: 182 PLSRG-RDSYGGPPRREPLP-SRRDVYLSPRDDGYSTK-DSYSS--RDYPSSRDTRDYAP 236
SRG R+ RE P SR Y RD G+S + +SYS R++PSSR+TRDYAP
Sbjct: 288 SYSRGYRNRRSSRETREYAPPSRGHGY---RDYGHSRRHESYSRGYRNHPSSRETRDYAP 344
Query: 237 PPRDYTYRDYGHSSSRDDYPSRGYGDRDGYGR--DRDYSDHPSGGSYRDSYESYGNSRSA 294
P RDY YRDYGHSS D++ SRGY DGYG RD+S+H SG SYRD+ + YG S A
Sbjct: 345 PHRDYAYRDYGHSSW-DEHSSRGYSYHDGYGEALGRDHSEHLSGSSYRDALQRYGTSHGA 403
Query: 295 PLTRGPPPSYGGSSRYDDYSSSRDGYGGSRDSYSSSRSDLYSSCDRVGRQERGLPPSVER 354
P RGP SYGGS+ + YS++RD YG S +SYSS Y + V R+++ PPS+ R
Sbjct: 404 PPARGPRMSYGGSTCH-AYSNTRDRYGRSWESYSSCGDFHYCDREHVCRKDQRNPPSLGR 462
Query: 355 GYPSSRDSYSSSSRGAPRGAGPGGSRSDRGGGRSRY 390
P R++ SSS A G G SRS++G SRY
Sbjct: 463 VLPDPREACGSSSYVASIVDG-GESRSEKGDS-SRY 496
>gi|4826974 RNA binding motif protein, Y-linked, family 1, member A1
[Homo sapiens]
Length = 496
Score = 338 bits (867), Expect = 5e-93
Identities = 210/423 (49%), Positives = 255/423 (60%), Gaps = 51/423 (12%)
Query: 1 MVEADRPGKLFIGGLNTETNEKALETVFGKYGRIVEVLLIKDRETNKSRGFAFVTFESPA 60
MVEAD PGKLFIGGLN ETNEK L+ VFGK+G I EVLLIKDR T+KSRGFAF+TFE+PA
Sbjct: 1 MVEADHPGKLFIGGLNRETNEKMLKAVFGKHGPISEVLLIKDR-TSKSRGFAFITFENPA 59
Query: 61 DAKDAARDMNGKSLDGKAIKVEQATKPSFERG-RHGPPPPPRSRGPPRGFGAGRGGSGGT 119
DAK+AA+DMNGKSL GKAIKVEQA KPSF+ G R PP R+R P + RG GGT
Sbjct: 60 DAKNAAKDMNGKSLHGKAIKVEQAKKPSFQSGGRRRPPASSRNRSPSGSLRSARGSRGGT 119
Query: 120 RG-PPSRGGHMDDGGYSMNFNMSSSRGPLPVKRGPPPRSGGPSPKRSAPSGLVRSSSGMG 178
RG PS GH+DDGGY+ + MS SRG +PVKRGP RSGGP PK+SAPS + RS+S MG
Sbjct: 120 RGWLPSHEGHLDDGGYTPDLKMSYSRGLIPVKRGPSSRSGGPPPKKSAPSAVARSNSWMG 179
Query: 179 GRAPLSRGRDSYGGPPRREPLPSRRDVYLSPRDDGYSTKDSYSSRDYPSSRDTRDYAPPP 238
+ P+S+ R++YG PPRR + S R+ +S R DGY+T D ++PS ++TRDYAPP
Sbjct: 180 SQGPMSQRRENYGVPPRRATISSWRNDRMSTRHDGYATNDG----NHPSCQETRDYAPPS 235
Query: 239 RDYTYRDYGHSSSRDDYPSRGYGDRDGYGRDRDYSDHPSGGSYRD--------SY-ESYG 289
R Y YRD GH S+RD++ SRGY + RDY+ G +YRD SY Y
Sbjct: 236 RGYAYRDNGH-SNRDEHSSRGYRNHRSSRETRDYAPPSRGHAYRDYGHSRRDESYSRGYR 294
Query: 290 NSRSAPLTRG-PPPS-------YGGSSRYDDYSSSRDGYGGSRD---------------- 325
N RS+ TR PPS YG S R++ YS + SR+
Sbjct: 295 NRRSSRETREYAPPSRGHGYRDYGHSRRHESYSRGYRNHPSSRETRDYAPPHRDYAYRDY 354
Query: 326 ---SYSSSRSDLYSSCDRVGRQERGLPPSVERGYPSSRDSYS--SSSRGAPRGAGP---- 376
S+ S YS D G + G S S RD+ +S GAP GP
Sbjct: 355 GHSSWDEHSSRGYSYHDGYG-EALGRDHSEHLSGSSYRDALQRYGTSHGAPPARGPRMSY 413
Query: 377 GGS 379
GGS
Sbjct: 414 GGS 416
Score = 162 bits (409), Expect = 6e-40
Identities = 122/276 (44%), Positives = 153/276 (55%), Gaps = 19/276 (6%)
Query: 122 PPSRGGHMDDGGYSMNFNMSSSRGPLPVKRGPPPRSGGPSPKRSAPSGLVRSSSGMGGRA 181
PPSRG D G+S N + SSRG + R P + A R
Sbjct: 233 PPSRGYAYRDNGHS-NRDEHSSRGYRNHRSSRETRDYAPPSRGHA----YRDYGHSRRDE 287
Query: 182 PLSRG-RDSYGGPPRREPLP-SRRDVYLSPRDDGYSTK-DSYSS--RDYPSSRDTRDYAP 236
SRG R+ RE P SR Y RD G+S + +SYS R++PSSR+TRDYAP
Sbjct: 288 SYSRGYRNRRSSRETREYAPPSRGHGY---RDYGHSRRHESYSRGYRNHPSSRETRDYAP 344
Query: 237 PPRDYTYRDYGHSSSRDDYPSRGYGDRDGYGR--DRDYSDHPSGGSYRDSYESYGNSRSA 294
P RDY YRDYGHSS D++ SRGY DGYG RD+S+H SG SYRD+ + YG S A
Sbjct: 345 PHRDYAYRDYGHSSW-DEHSSRGYSYHDGYGEALGRDHSEHLSGSSYRDALQRYGTSHGA 403
Query: 295 PLTRGPPPSYGGSSRYDDYSSSRDGYGGSRDSYSSSRSDLYSSCDRVGRQERGLPPSVER 354
P RGP SYGGS+ + YS++RD YG S +SYSS Y + V R+++ PPS+ R
Sbjct: 404 PPARGPRMSYGGSTCH-AYSNTRDRYGRSWESYSSCGDFHYCDREHVCRKDQRNPPSLGR 462
Query: 355 GYPSSRDSYSSSSRGAPRGAGPGGSRSDRGGGRSRY 390
P R++ SSS A G G SRS++G SRY
Sbjct: 463 VLPDPREACGSSSYVASIVDG-GESRSEKGDS-SRY 496
>gi|34303937 RNA binding motif protein, Y-linked, family 1, member F
[Homo sapiens]
Length = 496
Score = 338 bits (866), Expect = 6e-93
Identities = 210/423 (49%), Positives = 255/423 (60%), Gaps = 51/423 (12%)
Query: 1 MVEADRPGKLFIGGLNTETNEKALETVFGKYGRIVEVLLIKDRETNKSRGFAFVTFESPA 60
MVEAD PGKLFIGGLN ETNEK L+ VFGK+G I EVLLIKDR T+KSRGFAF+TFE+PA
Sbjct: 1 MVEADHPGKLFIGGLNRETNEKMLKAVFGKHGPISEVLLIKDR-TSKSRGFAFITFENPA 59
Query: 61 DAKDAARDMNGKSLDGKAIKVEQATKPSFERG-RHGPPPPPRSRGPPRGFGAGRGGSGGT 119
DAK+AA+DMNG SL GKAIKVEQA KPSF+ G R PP R+R P + RG SGGT
Sbjct: 60 DAKNAAKDMNGTSLHGKAIKVEQAKKPSFQSGGRRRPPASSRNRSPSGSLRSARGSSGGT 119
Query: 120 RG-PPSRGGHMDDGGYSMNFNMSSSRGPLPVKRGPPPRSGGPSPKRSAPSGLVRSSSGMG 178
RG PS GH+DDGGY+ + MS SRG +PVKRGP RSGGP PK+SAPS + RS+S MG
Sbjct: 120 RGWLPSHEGHLDDGGYTPDLKMSYSRGLIPVKRGPSSRSGGPPPKKSAPSAVARSNSWMG 179
Query: 179 GRAPLSRGRDSYGGPPRREPLPSRRDVYLSPRDDGYSTKDSYSSRDYPSSRDTRDYAPPP 238
+ P+S+ R++YG PPRR + S R+ +S R DGY+T D ++PS ++TRDYAPP
Sbjct: 180 SQGPMSQRRENYGVPPRRATISSWRNDRMSTRHDGYATNDG----NHPSCQETRDYAPPS 235
Query: 239 RDYTYRDYGHSSSRDDYPSRGYGDRDGYGRDRDYSDHPSGGSYRD--------SY-ESYG 289
R Y YRD GH S+RD++ SRGY + RDY+ G +YRD SY Y
Sbjct: 236 RGYAYRDNGH-SNRDEHSSRGYRNHRSSRETRDYAPPSRGHAYRDYGHSRRDESYSRGYR 294
Query: 290 NSRSAPLTRG-PPPS-------YGGSSRYDDYSSSRDGYGGSRD---------------- 325
N RS+ TR PPS YG S R++ YS + SR+
Sbjct: 295 NHRSSRETREYAPPSRGHGYRDYGHSRRHESYSRGYRNHPSSRETRDYAPPHRDYAYRDY 354
Query: 326 ---SYSSSRSDLYSSCDRVGRQERGLPPSVERGYPSSRDSYS--SSSRGAPRGAGP---- 376
S+ S YS D G + G S S RD+ +S GAP GP
Sbjct: 355 GHSSWDEHSSRGYSYHDGYG-EALGRDHSEHLSGSSYRDALQRYGTSHGAPPARGPRMSY 413
Query: 377 GGS 379
GGS
Sbjct: 414 GGS 416
Score = 165 bits (418), Expect = 6e-41
Identities = 121/276 (43%), Positives = 153/276 (55%), Gaps = 19/276 (6%)
Query: 122 PPSRGGHMDDGGYSMNFNMSSSRGPLPVKRGPPPRSGGPSPKRSAPSGLVRSSSGMGGRA 181
PPSRG D G+S N + SSRG + R P + A R
Sbjct: 233 PPSRGYAYRDNGHS-NRDEHSSRGYRNHRSSRETRDYAPPSRGHA----YRDYGHSRRDE 287
Query: 182 PLSRGRDSYGGP--PRREPLPSRRDVYLSPRDDGYSTK-DSYSS--RDYPSSRDTRDYAP 236
SRG ++ R PSR Y RD G+S + +SYS R++PSSR+TRDYAP
Sbjct: 288 SYSRGYRNHRSSRETREYAPPSRGHGY---RDYGHSRRHESYSRGYRNHPSSRETRDYAP 344
Query: 237 PPRDYTYRDYGHSSSRDDYPSRGYGDRDGYGR--DRDYSDHPSGGSYRDSYESYGNSRSA 294
P RDY YRDYGHSS D++ SRGY DGYG RD+S+H SG SYRD+ + YG S A
Sbjct: 345 PHRDYAYRDYGHSSW-DEHSSRGYSYHDGYGEALGRDHSEHLSGSSYRDALQRYGTSHGA 403
Query: 295 PLTRGPPPSYGGSSRYDDYSSSRDGYGGSRDSYSSSRSDLYSSCDRVGRQERGLPPSVER 354
P RGP SYGGS+ + YS++RD YG S +SYSS Y + V R+++ PPS+ R
Sbjct: 404 PPARGPRMSYGGSTCH-AYSNTRDRYGRSWESYSSCGDFHYCDREHVCRKDQRNPPSLGR 462
Query: 355 GYPSSRDSYSSSSRGAPRGAGPGGSRSDRGGGRSRY 390
P R++Y SSS A G G SRS++G SRY
Sbjct: 463 VLPDPREAYGSSSYVASIVDG-GESRSEKGDS-SRY 496
>gi|56090529 RNA binding motif protein, Y-linked, family 1, member J
[Homo sapiens]
Length = 496
Score = 338 bits (866), Expect = 6e-93
Identities = 210/423 (49%), Positives = 255/423 (60%), Gaps = 51/423 (12%)
Query: 1 MVEADRPGKLFIGGLNTETNEKALETVFGKYGRIVEVLLIKDRETNKSRGFAFVTFESPA 60
MVEAD PGKLFIGGLN ETNEK L+ VFGK+G I EVLLIKDR T+KSRGFAF+TFE+PA
Sbjct: 1 MVEADHPGKLFIGGLNRETNEKMLKAVFGKHGPISEVLLIKDR-TSKSRGFAFITFENPA 59
Query: 61 DAKDAARDMNGKSLDGKAIKVEQATKPSFERG-RHGPPPPPRSRGPPRGFGAGRGGSGGT 119
DAK+AA+DMNG SL GKAIKVEQA KPSF+ G R PP R+R P + RG SGGT
Sbjct: 60 DAKNAAKDMNGTSLHGKAIKVEQAKKPSFQSGGRRRPPASSRNRSPSGSLRSARGSSGGT 119
Query: 120 RG-PPSRGGHMDDGGYSMNFNMSSSRGPLPVKRGPPPRSGGPSPKRSAPSGLVRSSSGMG 178
RG PS GH+DDGGY+ + MS SRG +PVKRGP RSGGP PK+SAPS + RS+S MG
Sbjct: 120 RGWLPSHEGHLDDGGYTPDLKMSYSRGLIPVKRGPSSRSGGPPPKKSAPSAVARSNSWMG 179
Query: 179 GRAPLSRGRDSYGGPPRREPLPSRRDVYLSPRDDGYSTKDSYSSRDYPSSRDTRDYAPPP 238
+ P+S+ R++YG PPRR + S R+ +S R DGY+T D ++PS ++TRDYAPP
Sbjct: 180 SQGPMSQRRENYGVPPRRATISSWRNDRMSTRHDGYATNDG----NHPSCQETRDYAPPS 235
Query: 239 RDYTYRDYGHSSSRDDYPSRGYGDRDGYGRDRDYSDHPSGGSYRD--------SY-ESYG 289
R Y YRD GH S+RD++ SRGY + RDY+ G +YRD SY Y
Sbjct: 236 RGYAYRDNGH-SNRDEHSSRGYRNHRSSRETRDYAPPSRGHAYRDYGHSRRDESYSRGYR 294
Query: 290 NSRSAPLTRG-PPPS-------YGGSSRYDDYSSSRDGYGGSRD---------------- 325
N RS+ TR PPS YG S R++ YS + SR+
Sbjct: 295 NHRSSRETREYAPPSRGHGYRDYGHSRRHESYSRGYRNHPSSRETRDYAPPHRDYAYRDY 354
Query: 326 ---SYSSSRSDLYSSCDRVGRQERGLPPSVERGYPSSRDSYS--SSSRGAPRGAGP---- 376
S+ S YS D G + G S S RD+ +S GAP GP
Sbjct: 355 GHSSWDEHSSRGYSYHDGYG-EALGRDHSEHLSGSSYRDALQRYGTSHGAPPARGPRMSY 413
Query: 377 GGS 379
GGS
Sbjct: 414 GGS 416
Score = 165 bits (418), Expect = 6e-41
Identities = 121/276 (43%), Positives = 153/276 (55%), Gaps = 19/276 (6%)
Query: 122 PPSRGGHMDDGGYSMNFNMSSSRGPLPVKRGPPPRSGGPSPKRSAPSGLVRSSSGMGGRA 181
PPSRG D G+S N + SSRG + R P + A R
Sbjct: 233 PPSRGYAYRDNGHS-NRDEHSSRGYRNHRSSRETRDYAPPSRGHA----YRDYGHSRRDE 287
Query: 182 PLSRGRDSYGGP--PRREPLPSRRDVYLSPRDDGYSTK-DSYSS--RDYPSSRDTRDYAP 236
SRG ++ R PSR Y RD G+S + +SYS R++PSSR+TRDYAP
Sbjct: 288 SYSRGYRNHRSSRETREYAPPSRGHGY---RDYGHSRRHESYSRGYRNHPSSRETRDYAP 344
Query: 237 PPRDYTYRDYGHSSSRDDYPSRGYGDRDGYGR--DRDYSDHPSGGSYRDSYESYGNSRSA 294
P RDY YRDYGHSS D++ SRGY DGYG RD+S+H SG SYRD+ + YG S A
Sbjct: 345 PHRDYAYRDYGHSSW-DEHSSRGYSYHDGYGEALGRDHSEHLSGSSYRDALQRYGTSHGA 403
Query: 295 PLTRGPPPSYGGSSRYDDYSSSRDGYGGSRDSYSSSRSDLYSSCDRVGRQERGLPPSVER 354
P RGP SYGGS+ + YS++RD YG S +SYSS Y + V R+++ PPS+ R
Sbjct: 404 PPARGPRMSYGGSTCH-AYSNTRDRYGRSWESYSSCGDFHYCDREHVCRKDQRNPPSLGR 462
Query: 355 GYPSSRDSYSSSSRGAPRGAGPGGSRSDRGGGRSRY 390
P R++Y SSS A G G SRS++G SRY
Sbjct: 463 VLPDPREAYGSSSYVASIVDG-GESRSEKGDS-SRY 496
>gi|56090527 RNA binding motif protein, Y-linked, family 1, member E
[Homo sapiens]
Length = 496
Score = 337 bits (865), Expect = 8e-93
Identities = 190/345 (55%), Positives = 233/345 (67%), Gaps = 25/345 (7%)
Query: 1 MVEADRPGKLFIGGLNTETNEKALETVFGKYGRIVEVLLIKDRETNKSRGFAFVTFESPA 60
MVEAD PGKLFIGGLN ETNEK L+ VFGK+G I EVLLIKDR T+KSRGFAF+TFE+PA
Sbjct: 1 MVEADHPGKLFIGGLNRETNEKMLKAVFGKHGPISEVLLIKDR-TSKSRGFAFITFENPA 59
Query: 61 DAKDAARDMNGKSLDGKAIKVEQATKPSFERG-RHGPPPPPRSRGPPRGFGAGRGGSGGT 119
DAK+AA+DMNGKSL GKAIKVEQA KPSF+ G R PP R+R P + RG GGT
Sbjct: 60 DAKNAAKDMNGKSLHGKAIKVEQAKKPSFQSGGRRRPPASSRNRSPSGSLRSARGSRGGT 119
Query: 120 RG-PPSRGGHMDDGGYSMNFNMSSSRGPLPVKRGPPPRSGGPSPKRSAPSGLVRSSSGMG 178
RG PS+ GH+DDGGY+ + MS SRG +PVKRGP RSGGP PK+SAPS + RS+S MG
Sbjct: 120 RGWLPSQEGHLDDGGYTPDLKMSYSRGLIPVKRGPSSRSGGPPPKKSAPSAVARSNSWMG 179
Query: 179 GRAPLSRGRDSYGGPPRREPLPSRRDVYLSPRDDGYSTKDSYSSRDYPSSRDTRDYAPPP 238
+ P+S+ R++YG PPRR + S R+ +S R DGY+T D ++PS ++TRDYAPP
Sbjct: 180 SQGPMSQRRENYGVPPRRATISSWRNDRMSTRHDGYATNDG----NHPSCQETRDYAPPS 235
Query: 239 RDYTYRDYGHSSSRDDYPSRGYGDRDGYGRDRDYSDHPSGGSYRD--------SY-ESYG 289
R Y YRD GH S+RD++ SRGY + RDY+ G +YRD SY Y
Sbjct: 236 RGYAYRDNGH-SNRDEHSSRGYRNHRSSRETRDYAPPSRGHAYRDYGHSRRDESYSRGYR 294
Query: 290 NSRSAPLTRG-PPPS-------YGGSSRYDDYSSSRDGYGGSRDS 326
N RS+ TR PPS YG S R++ YS + SR++
Sbjct: 295 NRRSSRETREYAPPSRGHGYRDYGHSRRHESYSRGYRNHPSSRET 339
Score = 160 bits (406), Expect = 1e-39
Identities = 121/276 (43%), Positives = 153/276 (55%), Gaps = 19/276 (6%)
Query: 122 PPSRGGHMDDGGYSMNFNMSSSRGPLPVKRGPPPRSGGPSPKRSAPSGLVRSSSGMGGRA 181
PPSRG D G+S N + SSRG + R P + A R
Sbjct: 233 PPSRGYAYRDNGHS-NRDEHSSRGYRNHRSSRETRDYAPPSRGHA----YRDYGHSRRDE 287
Query: 182 PLSRG-RDSYGGPPRREPLP-SRRDVYLSPRDDGYSTK-DSYSS--RDYPSSRDTRDYAP 236
SRG R+ RE P SR Y RD G+S + +SYS R++PSSR+TRDYAP
Sbjct: 288 SYSRGYRNRRSSRETREYAPPSRGHGY---RDYGHSRRHESYSRGYRNHPSSRETRDYAP 344
Query: 237 PPRDYTYRDYGHSSSRDDYPSRGYGDRDGYGR--DRDYSDHPSGGSYRDSYESYGNSRSA 294
P RDY YRDYGH SS D++ SRGY DGYG RD+S+H SG SYRD+ + YG + A
Sbjct: 345 PHRDYAYRDYGH-SSWDEHSSRGYSYHDGYGEALGRDHSEHLSGSSYRDALQRYGTAHGA 403
Query: 295 PLTRGPPPSYGGSSRYDDYSSSRDGYGGSRDSYSSSRSDLYSSCDRVGRQERGLPPSVER 354
P RGP SYGGS+ + YS++RD YG S +SYSS Y + V R+++ PPS+ R
Sbjct: 404 PPARGPRMSYGGSTCH-AYSNTRDRYGRSWESYSSCGDFHYCDREHVCRKDQRNPPSLGR 462
Query: 355 GYPSSRDSYSSSSRGAPRGAGPGGSRSDRGGGRSRY 390
P R++ SSS A G G SRS++G SRY
Sbjct: 463 VLPDPREACGSSSYVASIVDG-GESRSEKGDS-SRY 496
>gi|223890219 RNA binding motif protein, X-linked-like 3 [Homo
sapiens]
Length = 1067
Score = 296 bits (758), Expect = 2e-80
Identities = 188/412 (45%), Positives = 224/412 (54%), Gaps = 45/412 (10%)
Query: 1 MVEADRPGKLFIGGLNTETNEKALETVFGKYGRIVEVLLIKDRETNKSRGFAFVTFESPA 60
M+EADRP KLFIGGLN +T+EKAL+ FGKYG I++V L+KDR+TNKSRGFAFVTFESPA
Sbjct: 1 MMEADRPEKLFIGGLNLKTDEKALKAEFGKYGHIIKVFLMKDRKTNKSRGFAFVTFESPA 60
Query: 61 DAKDAARDMNGKSLDGKAIKVEQATKPSFERGRHGPPPPPRSRGPPRGFGAGRGGSGGTR 120
DAK AARDMNGK LDGKAI V Q KP+F+ R PP P S R RGG +
Sbjct: 61 DAKAAARDMNGKYLDGKAIMVAQTIKPAFKSSR-WVPPTPGSGSRSRFSHRTRGGGSSPQ 119
Query: 121 GPPSRGGHMDDGGYSMNFNMSSSRGPLPVKRGPPPRS-GGPSPKRSAPSGLVRS-SSGMG 178
PPS+G D GY+ F++ R P+P KRGPPPR P KR+ PS L S GM
Sbjct: 120 RPPSQGRPDDGRGYAGYFDLWPYRAPMPRKRGPPPRHWASPPHKRATPSSLAHSVGCGMR 179
Query: 179 GRAPLSRGRDSY--------GGPPRREPLPSRRDVYLSPRDDGYSTK-------DSYSS- 222
G+AP G+D Y GPP + +P R G K D YS
Sbjct: 180 GKAPTVSGQDGYSGLQPRRWAGPPHKRAVP--RSSLARIGGSGMPGKAPAVWGQDGYSGP 237
Query: 223 ---RDYPSSRDTRDYAPPPRDYTYRDYGHSSSRDDYPSRGYGDRDGY-GRDRDYSDHPSG 278
P RD D+ P RDY+ R YGHSS D P RG G+++GY GRD +Y+DHPS
Sbjct: 238 RVREPLPPCRDPGDFVPALRDYSRRYYGHSSVPDYRPLRGDGNQNGYRGRDHEYTDHPSK 297
Query: 279 GSYRDSYESYGNSRSAPLTRGPPPSYGGSSRYDDYSSSRDGYGGSRDSYSSSRSDLYSSC 338
GSYR+ +SYG A G PPSYGG RY++Y G S D+ S
Sbjct: 298 GSYREPLKSYGGPCGAAPVWGTPPSYGGGCRYEEYQ------GNSPDACSE--------- 342
Query: 339 DRVGRQERGLPPSVERGYPSSRDSYSSSSRGAPRGAGPGGSRSDRGGGRSRY 390
GR LP + Y SRD + G + G SRSDR G Y
Sbjct: 343 ---GRSSEALPVVLPDAY--SRDHSPKAYSGGRSSSSNGYSRSDRYGEEGCY 389
Score = 103 bits (257), Expect = 3e-22
Identities = 110/335 (32%), Positives = 137/335 (40%), Gaps = 46/335 (13%)
Query: 88 SFERGRHGPPPPPRSRGPPRGFGAGRGGSGGTRGPPSRGGHMD--DGGYSMNFNMSSSRG 145
S + G P S G + R G GG R RG +D GG S N + S G
Sbjct: 747 SLDANSSGRLPDAYSGGHDSSSRSHRYGGGG-RYEEYRGRSLDANSGGRSPN---AYSGG 802
Query: 146 PLPVKRGPPPRSGGPSPKRSAPSGLVRSSSGMGGRAP--LSRGRDS----------YGGP 193
R P R GG + S + GG +P S GRDS YGG
Sbjct: 803 HNSSSRNDPCRGGGRYEENRGHS----LDANSGGHSPNAYSGGRDSSSNSYDRSHRYGGG 858
Query: 194 PRREPLPSR-RDVYLSPRDDGYSTKDSYSSRDYPSSRDTRDYAPPPRDYTYRDYGHSSSR 252
E R D + R + D Y+ Y RD+ + D+ YG
Sbjct: 859 GHYEEYRGRSHDTHSRGRSPDAHSGDHYTEA-YSRGRDSFSNSYGRSDH----YGRGGCY 913
Query: 253 DDYPSRGYGDRDGYGRDRDYSDHPSGGSYR----DSYESY---------GNSRSAPLTRG 299
++Y R G GR + S++ G S+R YE Y G S+ + G
Sbjct: 914 EEYQGRSPNAYGG-GRGLNSSNNSHGRSHRYGGGGRYEEYRGPSPDAHSGGRDSSIKSYG 972
Query: 300 PPPSYGGSSRYDDYSSSR-DGYGGSRDSYSSS--RSDLYS-SCDRVGRQERGLPPSVERG 355
YGG Y++Y S D Y G D S+S RSD YS DRVGR +RGLP +E G
Sbjct: 973 LSDRYGGGGHYEEYQGSLPDAYSGDHDRSSNSYGRSDRYSRGRDRVGRPDRGLPLPMETG 1032
Query: 356 YPSSRDSYSSSSRGAPRGAGPGGSRSDRGGGRSRY 390
P DSYS S PRG G G R +RG GRSRY
Sbjct: 1033 SPPLHDSYSRSGCRVPRGGGRQGGRFERGEGRSRY 1067
Score = 46.2 bits (108), Expect = 5e-05
Identities = 71/246 (28%), Positives = 92/246 (37%), Gaps = 61/246 (24%)
Query: 178 GGRAP--LSRGRDS------YGGPPRREPLPSRRDVYLSPRDDGYSTKDSYSSRDYPSSR 229
GGR+P S G DS YGG R E R L + G + D+YS SS+
Sbjct: 643 GGRSPDAYSGGHDSSGQSNCYGGGGRYEEYRGR----LLDANSGGRSPDAYSGGHDSSSQ 698
Query: 230 DTRDYAPPPRDYTYRDYGHSSSRDDYPSRGYG-DRDGYGRDRD-YSDHPSGGSYRDSYES 287
R YG ++Y RG+ D + GR D YS S D Y
Sbjct: 699 SNR-------------YGGGGRYEEY--RGHSLDANSGGRSPDTYSRGHDSSSQSDHYGG 743
Query: 288 YGNSRSAPLTRGPPPS-------------YGGSSRYDDY---SSSRDGYGGSRDSY---- 327
G S A + P + YGG RY++Y S + G S ++Y
Sbjct: 744 GGRSLDANSSGRLPDAYSGGHDSSSRSHRYGGGGRYEEYRGRSLDANSGGRSPNAYSGGH 803
Query: 328 -SSSRSDLYSSCDRVGRQERGLPPSVE--------RGYPSSRDSYSSSSRGAPRGAGPGG 378
SSSR+D C GR E S++ Y RDS S+S + R G G
Sbjct: 804 NSSSRND---PCRGGGRYEENRGHSLDANSGGHSPNAYSGGRDSSSNSYDRSHRYGGGGH 860
Query: 379 SRSDRG 384
RG
Sbjct: 861 YEEYRG 866
Score = 42.4 bits (98), Expect = 7e-04
Identities = 99/355 (27%), Positives = 123/355 (34%), Gaps = 87/355 (24%)
Query: 103 RGPPRGFGAGRGGSGGTRGPPSRGGHMDDGGYSMNFNMSSSRG----PLPV--------K 150
R P + +G G + PPS GG Y N + S G LPV
Sbjct: 301 REPLKSYGGPCGAAPVWGTPPSYGGGCRYEEYQGNSPDACSEGRSSEALPVVLPDAYSRD 360
Query: 151 RGPPPRSGGPSPKRSAPSGLVRSS--------SGMGGRAP--LSRGRDS----------Y 190
P SGG S S+ +G RS GR+P S GR+S Y
Sbjct: 361 HSPKAYSGGRS---SSSNGYSRSDRYGEEGCYEEYRGRSPDAHSGGRNSSSNSYGQSHHY 417
Query: 191 GGPPRREPLPSRR----------DVYLSPR-DDGYSTKDSYSS-----------RDYPS- 227
GG R E R D + R DD YS SS +Y
Sbjct: 418 GGEGRYEEYRGRSHEARSGGRSTDAHSRGRSDDAYSGGHDSSSWSDCCGGGGRYEEYQGR 477
Query: 228 SRDTRDYAPPPRDYTYRDYGHSSSRDDYPSRGYGDRDGYGRDRDYS-DHPSGGSYRDSYE 286
S D P Y+ GH +S S YG Y +R +S D SGG D++
Sbjct: 478 SLDANSGGCSPEAYSG---GHDNSSW---SDRYGVGGHYEENRGHSLDANSGGRSPDTHS 531
Query: 287 SYGNSRSAPLTRGPPPSYGGSSRYDDYSSSRDGYGG--SRDSYSSSRSDLYSSCDRVG-- 342
G S+ + G YGG RY+ S D + G S D+YS D S +R G
Sbjct: 532 --GGHSSSSNSYGQSHRYGGEGRYEYRGRSHDAHSGGCSADAYSGGH-DSSSQSNRYGGG 588
Query: 343 ---RQERGLPPSVERG------YPSSRDSYSSSSRGAPRGAGPGGSRSDRGGGRS 388
+ RG G Y DS S S R GG R + GRS
Sbjct: 589 GCYEEYRGRSLDANSGGRSPNAYSGGHDSSSWSHRYG------GGGRYEEYRGRS 637
>gi|239752336 PREDICTED: similar to RNA binding motif protein,
X-linked [Homo sapiens]
Length = 138
Score = 230 bits (587), Expect = 1e-60
Identities = 113/131 (86%), Positives = 117/131 (89%)
Query: 1 MVEADRPGKLFIGGLNTETNEKALETVFGKYGRIVEVLLIKDRETNKSRGFAFVTFESPA 60
M EADR GK FIGGLNTETN+KALE VFGKYG+IVEV L+KD ETNKSRGFAF+TFE PA
Sbjct: 1 MGEADRLGKFFIGGLNTETNKKALEAVFGKYGQIVEVHLMKDCETNKSRGFAFITFERPA 60
Query: 61 DAKDAARDMNGKSLDGKAIKVEQATKPSFERGRHGPPPPPRSRGPPRGFGAGRGGSGGTR 120
DAKDAARDMNGKSLDGKAIKVEQATKPSFE GR GPPPPPRSRGPPR GRGGSGGTR
Sbjct: 61 DAKDAARDMNGKSLDGKAIKVEQATKPSFESGRRGPPPPPRSRGPPRVLRGGRGGSGGTR 120
Query: 121 GPPSRGGHMDD 131
PPSRGGHMDD
Sbjct: 121 EPPSRGGHMDD 131
>gi|239746849 PREDICTED: hypothetical protein XP_002343863 [Homo
sapiens]
Length = 138
Score = 230 bits (587), Expect = 1e-60
Identities = 113/131 (86%), Positives = 117/131 (89%)
Query: 1 MVEADRPGKLFIGGLNTETNEKALETVFGKYGRIVEVLLIKDRETNKSRGFAFVTFESPA 60
M EADR GK FIGGLNTETN+KALE VFGKYG+IVEV L+KD ETNKSRGFAF+TFE PA
Sbjct: 1 MGEADRLGKFFIGGLNTETNKKALEAVFGKYGQIVEVHLMKDCETNKSRGFAFITFERPA 60
Query: 61 DAKDAARDMNGKSLDGKAIKVEQATKPSFERGRHGPPPPPRSRGPPRGFGAGRGGSGGTR 120
DAKDAARDMNGKSLDGKAIKVEQATKPSFE GR GPPPPPRSRGPPR GRGGSGGTR
Sbjct: 61 DAKDAARDMNGKSLDGKAIKVEQATKPSFESGRRGPPPPPRSRGPPRVLRGGRGGSGGTR 120
Query: 121 GPPSRGGHMDD 131
PPSRGGHMDD
Sbjct: 121 EPPSRGGHMDD 131
>gi|239757825 PREDICTED: hypothetical protein XP_002346350 [Homo
sapiens]
Length = 196
Score = 167 bits (422), Expect = 2e-41
Identities = 85/99 (85%), Positives = 88/99 (88%), Gaps = 2/99 (2%)
Query: 293 SAPLTRGPPPSYGGSSRYDDYSSSRDGYGGSRDSYSSSRSDLYSSC-DRVGRQERGLPPS 351
S+ TR PP SYGGSSRYDDYSSSRDGYGGSRDSYSSSRSDLYSS D+VGRQERGLPPS
Sbjct: 99 SSTYTRAPP-SYGGSSRYDDYSSSRDGYGGSRDSYSSSRSDLYSSGRDQVGRQERGLPPS 157
Query: 352 VERGYPSSRDSYSSSSRGAPRGAGPGGSRSDRGGGRSRY 390
+ERGYP RDSYSSSSRG PRG G GGSRSDRGGGRSRY
Sbjct: 158 MERGYPPPRDSYSSSSRGTPRGGGRGGSRSDRGGGRSRY 196
Score = 42.0 bits (97), Expect = 0.001
Identities = 37/110 (33%), Positives = 43/110 (39%), Gaps = 13/110 (11%)
Query: 178 GGRAPL------SRGRDSYGGPPRREPLPSRRDVYLSPRDDGYSTK-DSYSSRDYPSSRD 230
G R PL +R SYGG R + S RD Y RD S++ D YSS R
Sbjct: 91 GNRCPLVESSTYTRAPPSYGGSSRYDDYSSSRDGYGGSRDSYSSSRSDLYSSGRDQVGRQ 150
Query: 231 TRDYAPPPRDYTYRDYGHSSSRDDYPSRGYGDRDGYGRDRDYSDHPSGGS 280
R P + G+ RD Y S G G GR SD G S
Sbjct: 151 ERGLPPS------MERGYPPPRDSYSSSSRGTPRGGGRGGSRSDRGGGRS 194
Score = 35.8 bits (81), Expect = 0.068
Identities = 28/70 (40%), Positives = 32/70 (45%), Gaps = 20/70 (28%)
Query: 58 SPADAKDAARDMNGKSLDGKAIKVEQATKPSFERGRHGPPPPPR------SRGPPRGFGA 111
S +D + RD G+ E+ PS ERG PPPR SRG PRG
Sbjct: 135 SRSDLYSSGRDQVGRQ--------ERGLPPSMERGY----PPPRDSYSSSSRGTPRG--G 180
Query: 112 GRGGSGGTRG 121
GRGGS RG
Sbjct: 181 GRGGSRSDRG 190
>gi|4502847 cold inducible RNA binding protein [Homo sapiens]
Length = 172
Score = 124 bits (310), Expect = 2e-28
Identities = 80/168 (47%), Positives = 99/168 (58%), Gaps = 13/168 (7%)
Query: 4 ADRPGKLFIGGLNTETNEKALETVFGKYGRIVEVLLIKDRETNKSRGFAFVTFESPADAK 63
A GKLF+GGL+ +TNE++LE VF KYG+I EV+++KDRET +SRGF FVTFE+ DAK
Sbjct: 2 ASDEGKLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAK 61
Query: 64 DAARDMNGKSLDGKAIKVEQATKPSFERGRHGPPPPPRSRGPPR-GFGAGRGGS--GGTR 120
DA MNGKS+DG+ I+V+QA K S R R RG R G G GRG S GG R
Sbjct: 62 DAMMAMNGKSVDGRQIRVDQAGKSSDNRSRGYRGGSAGGRGFFRGGRGRGRGFSRGGGDR 121
Query: 121 GPPSRGGHMDDGGYSMNFNMSSSRGPLPVKRGPPPRSGGPSPKRSAPS 168
G GGY + + SSR +SGG S + S S
Sbjct: 122 GYGGNRFESRSGGYGGSRDYYSSRS----------QSGGYSDRSSGGS 159
Score = 43.1 bits (100), Expect = 4e-04
Identities = 23/48 (47%), Positives = 27/48 (56%), Gaps = 4/48 (8%)
Query: 245 DYGHSSSRDDYPSRGYGDRDGYGRDRD----YSDHPSGGSYRDSYESY 288
D G+ +R + S GYG Y R YSD SGGSYRDSY+SY
Sbjct: 120 DRGYGGNRFESRSGGYGGSRDYYSSRSQSGGYSDRSSGGSYRDSYDSY 167
Score = 33.9 bits (76), Expect = 0.26
Identities = 32/99 (32%), Positives = 41/99 (41%), Gaps = 19/99 (19%)
Query: 268 RDRDYSDHPSGGSYRDSYESYGNSRSAPLTRGPPPSYGGSSRYDDYSSSRDGYGGSRDSY 327
R R Y +GG + G R +RG G +R++ S GYGGSRD Y
Sbjct: 89 RSRGYRGGSAGGR---GFFRGGRGRGRGFSRGGGDRGYGGNRFESRSG---GYGGSRDYY 142
Query: 328 SS-SRSDLYSSCDRVGRQERGLPPSVERGYPSSRDSYSS 365
SS S+S YS G Y S DSY++
Sbjct: 143 SSRSQSGGYSDRSSGG------------SYRDSYDSYAT 169
>gi|5803137 RNA binding motif protein 3 [Homo sapiens]
Length = 157
Score = 105 bits (261), Expect = 9e-23
Identities = 63/139 (45%), Positives = 82/139 (58%), Gaps = 3/139 (2%)
Query: 8 GKLFIGGLNTETNEKALETVFGKYGRIVEVLLIKDRETNKSRGFAFVTFESPADAKDAAR 67
GKLF+GGLN T+E+ALE F +G I EV+++KDRET +SRGF F+TF +P A A R
Sbjct: 6 GKLFVGGLNFNTDEQALEDHFSSFGPISEVVVVKDRETQRSRGFGFITFTNPEHASVAMR 65
Query: 68 DMNGKSLDGKAIKVEQATKPSFERGRHGPPPPPRSRGPPRGFGAGRGGSGGTRGPPSR-G 126
MNG+SLDG+ I+V+ A K + RG G RG G G G G R SR G
Sbjct: 66 AMNGESLDGRQIRVDHAGKSA--RGTRGGGFGAHGRGRSYSRGGGDQGYGSGRYYDSRPG 123
Query: 127 GHMDDGGYSMNFNMSSSRG 145
G+ G S ++N + G
Sbjct: 124 GYGYGYGRSRDYNGRNQGG 142
Score = 38.9 bits (89), Expect = 0.008
Identities = 23/50 (46%), Positives = 29/50 (58%), Gaps = 8/50 (16%)
Query: 245 DYGHSSSRDDYPSRGYGDRDGYGRDRDYS-------DHPSGGSYRDSYES 287
D G+ S R Y SR G GYGR RDY+ D SGG+YRD+Y++
Sbjct: 109 DQGYGSGRY-YDSRPGGYGYGYGRSRDYNGRNQGGYDRYSGGNYRDNYDN 157
Score = 32.3 bits (72), Expect = 0.75
Identities = 27/75 (36%), Positives = 32/75 (42%), Gaps = 23/75 (30%)
Query: 257 SRGYGDRDGYGRDRDYSDHPSGGSYRDSYESYGNSRSAPLTRGPPPSYGGSSR--YDDYS 314
SRG GD+ GYG R Y P G Y YG SR Y G ++ YD YS
Sbjct: 104 SRGGGDQ-GYGSGRYYDSRPGGYGY-----GYGRSR----------DYNGRNQGGYDRYS 147
Query: 315 SSRDGYGGSRDSYSS 329
G RD+Y +
Sbjct: 148 G-----GNYRDNYDN 157
>gi|4507353 TBP-associated factor 15 isoform 2 [Homo sapiens]
Length = 589
Score = 98.6 bits (244), Expect = 9e-21
Identities = 124/395 (31%), Positives = 144/395 (36%), Gaps = 62/395 (15%)
Query: 2 VEADRPGKLFIGGLNTETNEKALETVFGKYGRIVEVLLIKDRETNKSRGFAFVTFESPAD 61
V D+ G+ F +TN+K + + Y D++T K +G A V+F+ P
Sbjct: 242 VSTDQVGEFFKQIGIIKTNKKTGKPMINLY---------TDKDTGKPKGEATVSFDDPPS 292
Query: 62 AKDAARDMNGKSLDGKAIKVEQAT-KPSFERGRHGPPPPPRSRGPPRGFGAGRGGSGGTR 120
AK A +GK G IKV AT +P F RG G R RG R GRGG G
Sbjct: 293 AKAAIDWFDGKEFHGNIIKVSFATRRPEFMRG-GGSGGGRRGRGGYR----GRGGFQGRG 347
Query: 121 GPPSRGGHMDDGGYSMNFNMSSSRGPLPVKRGPPPRSGGPSPKRSAPSGLVRSSSGMGGR 180
G P G + N N + +R + P P+ S PSG G GG
Sbjct: 348 GDPKSGDWVCPNPSCGNMNFA--------RRNSCNQCNEPRPEDSRPSGGDFRGRGYGGE 399
Query: 181 APLSRGRDSYGGPPRREPLPSRRDVYLSPRDDGYSTKDSYSSRDYPSSRDTRDYAPPPRD 240
RGR GG R Y R G D S Y R Y D
Sbjct: 400 RGY-RGRGGRGGD---------RGGYGGDRSGGGYGGDRSSGGGYSGDRSGGGYG---GD 446
Query: 241 YTYRDYGHSSSRDDYPSRGY-GDR-DGYGRDRDYSDHPSGGSYRDSYESYGNSRSAPLTR 298
+ YG GY GDR GYG DR GG Y YG R
Sbjct: 447 RSGGGYGGDR------GGGYGGDRGGGYGGDR-------GGGYGGDRGGYGGDRGGGY-G 492
Query: 299 GPPPSYGGSSRYDDYSSSRDGYGGSRDSYSSSRSDLYSSCDRVGRQERGLPPSVERGYPS 358
G YGG Y R GYGG R Y RS DR G G S GY
Sbjct: 493 GDRGGYGGDR--GGYGGDRGGYGGDRGGYGGDRSRGGYGGDRGGGSGYGGDRS--GGYGG 548
Query: 359 SRDSYSSSSRGAPRGAGPGGSRSDRG---GGRSRY 390
R S G RG G GG R G GGR+ Y
Sbjct: 549 DR---SGGGYGGDRGGGYGGDRGGYGGKMGGRNDY 580
Score = 46.2 bits (108), Expect = 5e-05
Identities = 46/185 (24%), Positives = 66/185 (35%), Gaps = 43/185 (23%)
Query: 213 GYSTKDSYSSRDYPSSRDTRD--YAPPPRDYTYRDYGHSSSRDDYPSRG----------Y 260
GYS+ S+ Y + + Y+ P Y + G + + S+G Y
Sbjct: 52 GYSSYGQSYSQSYGGYENQKQSSYSQQP----YNNQGQQQNMESSGSQGGRAPSYDQPDY 107
Query: 261 GDRDGYGRDRDYSDHPSGGSYRDSYESYGNSRSAPLTRGPPPSYGGSSRYDDYSSSRDGY 320
G +D Y + Y H GSY D +Y ++D YS ++ Y
Sbjct: 108 GQQDSYDQQSGYDQHQ--GSY-DEQSNY------------------DQQHDSYSQNQQSY 146
Query: 321 GGSRDSYSSSRSDLYSSCDRVGRQERGLPPSVERGYPSSRDSYSSSSRGAPRGAGPGGSR 380
R++YS D R G RG S +G R Y RG G+ G
Sbjct: 147 HSQRENYSHHTQDDRRDVSRYGEDNRGYGGS--QGGGRGRGGYDKDGRGPMTGSSGG--- 201
Query: 381 SDRGG 385
DRGG
Sbjct: 202 -DRGG 205
Score = 35.0 bits (79), Expect = 0.12
Identities = 75/343 (21%), Positives = 108/343 (31%), Gaps = 91/343 (26%)
Query: 112 GRGGSGGTRGPPSRGGHMDDGGYSMNFNMSSSRGPLPVKRGPPPRSGGPSPKRSAPSGL- 170
G G G S G D Y N++ SS G + G + K+S+ S
Sbjct: 24 GSQGYGQASQSYSGYGQTTDSSYGQNYSGYSSYG----QSYSQSYGGYENQKQSSYSQQP 79
Query: 171 ---------VRSSSGMGGRAPLSRG-----RDSY----------GGPPRREPLPSRRDVY 206
+ SS GGRAP +DSY G + + D Y
Sbjct: 80 YNNQGQQQNMESSGSQGGRAPSYDQPDYGQQDSYDQQSGYDQHQGSYDEQSNYDQQHDSY 139
Query: 207 LSPRDDGYSTKDSYSSRDYPSSRDTRDYAPPPRDYTYRDYGHSSSRDDYPSRGYGDRDGY 266
+ +S +++YS RD Y R G+ S+ RG D+DG
Sbjct: 140 SQNQQSYHSQRENYSHHTQDDRRDVSRYGEDNR-------GYGGSQGGGRGRGGYDKDGR 192
Query: 267 GRDRDYSDHPSGGSYRDSYESYGNSRSAPLTRGPPPSYGGSSRYDDYSSSRD-------- 318
G S G R ++++G R YG + D S + D
Sbjct: 193 GPMTG-----SSGGDRGGFKNFGGHR----------DYGPRTDADSESDNSDNNTIFVQG 237
Query: 319 -GYGGSRDSYSS--SRSDLYSSCDRVGRQERGLPPSVERGYPSSRDSYS----SSSRGA- 370
G G S D + + + + G+ L + G P + S S++ A
Sbjct: 238 LGEGVSTDQVGEFFKQIGIIKTNKKTGKPMINLYTDKDTGKPKGEATVSFDDPPSAKAAI 297
Query: 371 ------------------------PRGAGPGGSRSDRGGGRSR 389
RG G GG R RGG R R
Sbjct: 298 DWFDGKEFHGNIIKVSFATRRPEFMRGGGSGGGRRGRGGYRGR 340
Score = 33.1 bits (74), Expect = 0.44
Identities = 31/118 (26%), Positives = 40/118 (33%), Gaps = 21/118 (17%)
Query: 271 DYSDHPSGGSYRDSYESYGNSRSAPLTRGPPPSYGGSSRYDDYSSSRDGYGGSRDSYSSS 330
D + G + SY +YGN GS Y S S GYG + DS
Sbjct: 3 DSGSYGQSGGEQQSYSTYGNP--------------GSQGYGQASQSYSGYGQTTDSSYGQ 48
Query: 331 RSDLYSSCDRVGRQERGLPPSVERGYPSSRDSYSSSSRGAPRGAGPGGSRSDRGGGRS 388
YSS + Q G GY + + S S +G S GGR+
Sbjct: 49 NYSGYSSYGQSYSQSYG-------GYENQKQSSYSQQPYNNQGQQQNMESSGSQGGRA 99
>gi|21327701 TBP-associated factor 15 isoform 1 [Homo sapiens]
Length = 592
Score = 98.6 bits (244), Expect = 9e-21
Identities = 124/395 (31%), Positives = 144/395 (36%), Gaps = 62/395 (15%)
Query: 2 VEADRPGKLFIGGLNTETNEKALETVFGKYGRIVEVLLIKDRETNKSRGFAFVTFESPAD 61
V D+ G+ F +TN+K + + Y D++T K +G A V+F+ P
Sbjct: 245 VSTDQVGEFFKQIGIIKTNKKTGKPMINLY---------TDKDTGKPKGEATVSFDDPPS 295
Query: 62 AKDAARDMNGKSLDGKAIKVEQAT-KPSFERGRHGPPPPPRSRGPPRGFGAGRGGSGGTR 120
AK A +GK G IKV AT +P F RG G R RG R GRGG G
Sbjct: 296 AKAAIDWFDGKEFHGNIIKVSFATRRPEFMRG-GGSGGGRRGRGGYR----GRGGFQGRG 350
Query: 121 GPPSRGGHMDDGGYSMNFNMSSSRGPLPVKRGPPPRSGGPSPKRSAPSGLVRSSSGMGGR 180
G P G + N N + +R + P P+ S PSG G GG
Sbjct: 351 GDPKSGDWVCPNPSCGNMNFA--------RRNSCNQCNEPRPEDSRPSGGDFRGRGYGGE 402
Query: 181 APLSRGRDSYGGPPRREPLPSRRDVYLSPRDDGYSTKDSYSSRDYPSSRDTRDYAPPPRD 240
RGR GG R Y R G D S Y R Y D
Sbjct: 403 RGY-RGRGGRGGD---------RGGYGGDRSGGGYGGDRSSGGGYSGDRSGGGYG---GD 449
Query: 241 YTYRDYGHSSSRDDYPSRGY-GDR-DGYGRDRDYSDHPSGGSYRDSYESYGNSRSAPLTR 298
+ YG GY GDR GYG DR GG Y YG R
Sbjct: 450 RSGGGYGGDR------GGGYGGDRGGGYGGDR-------GGGYGGDRGGYGGDRGGGY-G 495
Query: 299 GPPPSYGGSSRYDDYSSSRDGYGGSRDSYSSSRSDLYSSCDRVGRQERGLPPSVERGYPS 358
G YGG Y R GYGG R Y RS DR G G S GY
Sbjct: 496 GDRGGYGGDR--GGYGGDRGGYGGDRGGYGGDRSRGGYGGDRGGGSGYGGDRS--GGYGG 551
Query: 359 SRDSYSSSSRGAPRGAGPGGSRSDRG---GGRSRY 390
R S G RG G GG R G GGR+ Y
Sbjct: 552 DR---SGGGYGGDRGGGYGGDRGGYGGKMGGRNDY 583
Score = 46.6 bits (109), Expect = 4e-05
Identities = 52/199 (26%), Positives = 69/199 (34%), Gaps = 29/199 (14%)
Query: 206 YLSPRDDGYSTKDSYSSRDYPSSRDTRDYAPPPRDYTYRDYGHSSSRDDYPSRGYGDR-- 263
Y +P GY +S+ Y T D + Y YG S S GY ++
Sbjct: 20 YGNPGSQGYGQ----ASQSYSGYGQTTDSSYGQNYSGYSSYGQSQSGYSQSYGGYENQKQ 75
Query: 264 --------DGYGRDRDYSDHPSGGSYRDSYES--YGNSRSAPLTRGPPP---SYGGSSRY 310
+ G+ ++ S G SY+ YG S G SY S Y
Sbjct: 76 SSYSQQPYNNQGQQQNMESSGSQGGRAPSYDQPDYGQQDSYDQQSGYDQHQGSYDEQSNY 135
Query: 311 DD----YSSSRDGYGGSRDSYSSSRSDLYSSCDRVGRQERGLPPSVERGYPSSRDSYSSS 366
D YS ++ Y R++YS D R G RG S +G R Y
Sbjct: 136 DQQHDSYSQNQQSYHSQRENYSHHTQDDRRDVSRYGEDNRGYGGS--QGGGRGRGGYDKD 193
Query: 367 SRGAPRGAGPGGSRSDRGG 385
RG G+ G DRGG
Sbjct: 194 GRGPMTGSSGG----DRGG 208
Score = 35.8 bits (81), Expect = 0.068
Identities = 77/344 (22%), Positives = 110/344 (31%), Gaps = 90/344 (26%)
Query: 112 GRGGSGGTRGPPSRGGHMDDGGYSMNFNMSSSRGPLPVKRGPPPRSGG-PSPKRSAPSGL 170
G G G S G D Y N++ SS G + G GG + K+S+ S
Sbjct: 24 GSQGYGQASQSYSGYGQTTDSSYGQNYSGYSSYGQS--QSGYSQSYGGYENQKQSSYSQQ 81
Query: 171 ----------VRSSSGMGGRAPLSRG-----RDSY----------GGPPRREPLPSRRDV 205
+ SS GGRAP +DSY G + + D
Sbjct: 82 PYNNQGQQQNMESSGSQGGRAPSYDQPDYGQQDSYDQQSGYDQHQGSYDEQSNYDQQHDS 141
Query: 206 YLSPRDDGYSTKDSYSSRDYPSSRDTRDYAPPPRDYTYRDYGHSSSRDDYPSRGYGDRDG 265
Y + +S +++YS RD Y R G+ S+ RG D+DG
Sbjct: 142 YSQNQQSYHSQRENYSHHTQDDRRDVSRYGEDNR-------GYGGSQGGGRGRGGYDKDG 194
Query: 266 YGRDRDYSDHPSGGSYRDSYESYGNSRSAPLTRGPPPSYGGSSRYDDYSSSRD------- 318
G S G R ++++G R YG + D S + D
Sbjct: 195 RGPMTG-----SSGGDRGGFKNFGGHR----------DYGPRTDADSESDNSDNNTIFVQ 239
Query: 319 --GYGGSRDSYSS--SRSDLYSSCDRVGRQERGLPPSVERGYPSSRDSYS----SSSRGA 370
G G S D + + + + G+ L + G P + S S++ A
Sbjct: 240 GLGEGVSTDQVGEFFKQIGIIKTNKKTGKPMINLYTDKDTGKPKGEATVSFDDPPSAKAA 299
Query: 371 -------------------------PRGAGPGGSRSDRGGGRSR 389
RG G GG R RGG R R
Sbjct: 300 IDWFDGKEFHGNIIKVSFATRRPEFMRGGGSGGGRRGRGGYRGR 343
>gi|156151396 heterogeneous nuclear ribonucleoprotein R isoform 3
[Homo sapiens]
Length = 535
Score = 85.9 bits (211), Expect = 6e-17
Identities = 88/304 (28%), Positives = 123/304 (40%), Gaps = 65/304 (21%)
Query: 10 LFIGGLNTETNEKALETVFGKYGRIVEVLLIKDRETNKSRGFAFVTFESPADAKDAARDM 69
LF+ L T E+ LE F ++G++ V +KD +AFV FE A A +M
Sbjct: 245 LFVRNLATTVTEEILEKSFSEFGKLERVKKLKD--------YAFVHFEDRGAAVKAMDEM 296
Query: 70 NGKSLDGKAIKVEQATKPSFERGRHGPP---------------PPPRSRGPPRGFGAGRG 114
NGK ++G+ I++ A P +R PPPR P RG G G G
Sbjct: 297 NGKEIEGEEIEIVLAKPPDKKRKERQAARQASRSTAYEDYYYHPPPRMPPPIRGRGRG-G 355
Query: 115 GSGGTRGPPS-------------------RGGHMD-----DGGYSMNFNMS--SSRGPLP 148
G GG PP RGG+ D D GY++ RG P
Sbjct: 356 GRGGYGYPPDYYGYEDYYDDYYGYDYHDYRGGYEDPYYGYDDGYAVRGRGGGRGGRGAPP 415
Query: 149 VKRG---PPPRSGGPSPKRSAPSGLVRSS-SGMGGRAPLSRGRDSYGGPPRREPLPSRRD 204
RG PPPR +R AP G R S G GG A RGR S G R +
Sbjct: 416 PPRGRGAPPPRGRAGYSQRGAPLGPPRGSRGGRGGPAQQQRGRGSRGSRGNR-----GGN 470
Query: 205 VYLSPRDDGYSTKDS-----YSSRDYPSSRDTRDYAPPPRDYTYRDYGHSSSRDDYPSRG 259
V + DGY+ DS + +++ S + DY+ +YG+++ ++
Sbjct: 471 VGGKRKADGYNQPDSKRRQTNNQQNWGSQPIAQQPLQQGGDYS-GNYGYNNDNQEFYQDT 529
Query: 260 YGDR 263
YG +
Sbjct: 530 YGQQ 533
Score = 45.1 bits (105), Expect = 1e-04
Identities = 52/156 (33%), Positives = 53/156 (33%), Gaps = 47/156 (30%)
Query: 234 YAPPPR-DYTYRDYGHSSSRDDY--PSRGYGDRDGYGRDRDYSDHPSGGSYRDSYESYGN 290
Y PPPR R G R Y P YG D Y Y H G Y D Y YG
Sbjct: 338 YHPPPRMPPPIRGRGRGGGRGGYGYPPDYYGYEDYYDDYYGYDYHDYRGGYEDPY--YG- 394
Query: 291 SRSAPLTRGPPPSYGGSSRYDDYSSSRDGYGGSRDSYSSSRSDLYSSCDRVGRQERGLPP 350
YDD + R G GG GR RG PP
Sbjct: 395 -------------------YDDGYAVR-GRGG-------------------GRGGRGAPP 415
Query: 351 SVE-RGYPSSRDSYSSSSRGAPRGAGPGGSRSDRGG 385
RG P R S RGAP G P GSR RGG
Sbjct: 416 PPRGRGAPPPRGRAGYSQRGAPLGP-PRGSRGGRGG 450
Score = 42.7 bits (99), Expect = 6e-04
Identities = 51/159 (32%), Positives = 56/159 (35%), Gaps = 30/159 (18%)
Query: 239 RDYTYRDYG-HSSSRDDYPSRGYG---DRDGYGRDRDYSDHPSGGSYRDSYESYGNSRSA 294
R Y DY H R P RG G R GYG DY Y D Y+ Y
Sbjct: 329 RSTAYEDYYYHPPPRMPPPIRGRGRGGGRGGYGYPPDYY------GYEDYYDDYYGYDYH 382
Query: 295 PLTRGPPPSYGGSSRYDDYSSSRDGYGGSRDSYSSSRSDLYSSCD----RVGRQERGLPP 350
G Y G YDD + R G GG R + R G +RG P
Sbjct: 383 DYRGGYEDPYYG---YDDGYAVR-GRGGGRGGRGAPPPPRGRGAPPPRGRAGYSQRGAPL 438
Query: 351 SVERGYPSSRDSYSSSSRGAP----RGAGPGGSRSDRGG 385
RG S RG P RG G GSR +RGG
Sbjct: 439 GPPRG--------SRGGRGGPAQQQRGRGSRGSRGNRGG 469
Score = 36.2 bits (82), Expect = 0.052
Identities = 18/59 (30%), Positives = 35/59 (59%)
Query: 9 KLFIGGLNTETNEKALETVFGKYGRIVEVLLIKDRETNKSRGFAFVTFESPADAKDAAR 67
++F+G + + E L +F K G I ++ L+ D + ++RG+AF+TF A++A +
Sbjct: 65 EVFVGKIPRDLYEDELVPLFEKAGPIWDLRLMMDPLSGQNRGYAFITFCGKEAAQEAVK 123
Score = 32.0 bits (71), Expect = 0.98
Identities = 28/83 (33%), Positives = 43/83 (51%), Gaps = 7/83 (8%)
Query: 9 KLFIGGL-NTETNEKALET---VFGKYGRIVEVLLI-KDRETNKSRGFAFVTFESPADAK 63
+LF+G + +T E LE V G +V+V+L + + K+RGF F+ +E A
Sbjct: 146 RLFVGSIPKNKTKENILEEFSKVTGLTEGLVDVILYHQPDDKKKNRGFCFLEYEDHKSAA 205
Query: 64 DAARD-MNGK-SLDGKAIKVEQA 84
A R M+GK + G + VE A
Sbjct: 206 QARRRLMSGKVKVWGNVVTVEWA 228
>gi|156151394 heterogeneous nuclear ribonucleoprotein R isoform 1
[Homo sapiens]
Length = 636
Score = 85.9 bits (211), Expect = 6e-17
Identities = 88/304 (28%), Positives = 123/304 (40%), Gaps = 65/304 (21%)
Query: 10 LFIGGLNTETNEKALETVFGKYGRIVEVLLIKDRETNKSRGFAFVTFESPADAKDAARDM 69
LF+ L T E+ LE F ++G++ V +KD +AFV FE A A +M
Sbjct: 346 LFVRNLATTVTEEILEKSFSEFGKLERVKKLKD--------YAFVHFEDRGAAVKAMDEM 397
Query: 70 NGKSLDGKAIKVEQATKPSFERGRHGPP---------------PPPRSRGPPRGFGAGRG 114
NGK ++G+ I++ A P +R PPPR P RG G G G
Sbjct: 398 NGKEIEGEEIEIVLAKPPDKKRKERQAARQASRSTAYEDYYYHPPPRMPPPIRGRGRG-G 456
Query: 115 GSGGTRGPPS-------------------RGGHMD-----DGGYSMNFNMS--SSRGPLP 148
G GG PP RGG+ D D GY++ RG P
Sbjct: 457 GRGGYGYPPDYYGYEDYYDDYYGYDYHDYRGGYEDPYYGYDDGYAVRGRGGGRGGRGAPP 516
Query: 149 VKRG---PPPRSGGPSPKRSAPSGLVRSS-SGMGGRAPLSRGRDSYGGPPRREPLPSRRD 204
RG PPPR +R AP G R S G GG A RGR S G R +
Sbjct: 517 PPRGRGAPPPRGRAGYSQRGAPLGPPRGSRGGRGGPAQQQRGRGSRGSRGNR-----GGN 571
Query: 205 VYLSPRDDGYSTKDS-----YSSRDYPSSRDTRDYAPPPRDYTYRDYGHSSSRDDYPSRG 259
V + DGY+ DS + +++ S + DY+ +YG+++ ++
Sbjct: 572 VGGKRKADGYNQPDSKRRQTNNQQNWGSQPIAQQPLQQGGDYS-GNYGYNNDNQEFYQDT 630
Query: 260 YGDR 263
YG +
Sbjct: 631 YGQQ 634
Score = 45.1 bits (105), Expect = 1e-04
Identities = 52/156 (33%), Positives = 53/156 (33%), Gaps = 47/156 (30%)
Query: 234 YAPPPR-DYTYRDYGHSSSRDDY--PSRGYGDRDGYGRDRDYSDHPSGGSYRDSYESYGN 290
Y PPPR R G R Y P YG D Y Y H G Y D Y YG
Sbjct: 439 YHPPPRMPPPIRGRGRGGGRGGYGYPPDYYGYEDYYDDYYGYDYHDYRGGYEDPY--YG- 495
Query: 291 SRSAPLTRGPPPSYGGSSRYDDYSSSRDGYGGSRDSYSSSRSDLYSSCDRVGRQERGLPP 350
YDD + R G GG GR RG PP
Sbjct: 496 -------------------YDDGYAVR-GRGG-------------------GRGGRGAPP 516
Query: 351 SVE-RGYPSSRDSYSSSSRGAPRGAGPGGSRSDRGG 385
RG P R S RGAP G P GSR RGG
Sbjct: 517 PPRGRGAPPPRGRAGYSQRGAPLGP-PRGSRGGRGG 551
Score = 42.7 bits (99), Expect = 6e-04
Identities = 51/159 (32%), Positives = 56/159 (35%), Gaps = 30/159 (18%)
Query: 239 RDYTYRDYG-HSSSRDDYPSRGYG---DRDGYGRDRDYSDHPSGGSYRDSYESYGNSRSA 294
R Y DY H R P RG G R GYG DY Y D Y+ Y
Sbjct: 430 RSTAYEDYYYHPPPRMPPPIRGRGRGGGRGGYGYPPDYY------GYEDYYDDYYGYDYH 483
Query: 295 PLTRGPPPSYGGSSRYDDYSSSRDGYGGSRDSYSSSRSDLYSSCD----RVGRQERGLPP 350
G Y G YDD + R G GG R + R G +RG P
Sbjct: 484 DYRGGYEDPYYG---YDDGYAVR-GRGGGRGGRGAPPPPRGRGAPPPRGRAGYSQRGAPL 539
Query: 351 SVERGYPSSRDSYSSSSRGAP----RGAGPGGSRSDRGG 385
RG S RG P RG G GSR +RGG
Sbjct: 540 GPPRG--------SRGGRGGPAQQQRGRGSRGSRGNRGG 570
Score = 36.2 bits (82), Expect = 0.052
Identities = 18/59 (30%), Positives = 35/59 (59%)
Query: 9 KLFIGGLNTETNEKALETVFGKYGRIVEVLLIKDRETNKSRGFAFVTFESPADAKDAAR 67
++F+G + + E L +F K G I ++ L+ D + ++RG+AF+TF A++A +
Sbjct: 166 EVFVGKIPRDLYEDELVPLFEKAGPIWDLRLMMDPLSGQNRGYAFITFCGKEAAQEAVK 224
Score = 32.0 bits (71), Expect = 0.98
Identities = 28/83 (33%), Positives = 43/83 (51%), Gaps = 7/83 (8%)
Query: 9 KLFIGGL-NTETNEKALET---VFGKYGRIVEVLLI-KDRETNKSRGFAFVTFESPADAK 63
+LF+G + +T E LE V G +V+V+L + + K+RGF F+ +E A
Sbjct: 247 RLFVGSIPKNKTKENILEEFSKVTGLTEGLVDVILYHQPDDKKKNRGFCFLEYEDHKSAA 306
Query: 64 DAARD-MNGK-SLDGKAIKVEQA 84
A R M+GK + G + VE A
Sbjct: 307 QARRRLMSGKVKVWGNVVTVEWA 329
>gi|156151392 heterogeneous nuclear ribonucleoprotein R isoform 4
[Homo sapiens]
Length = 532
Score = 85.9 bits (211), Expect = 6e-17
Identities = 88/304 (28%), Positives = 123/304 (40%), Gaps = 65/304 (21%)
Query: 10 LFIGGLNTETNEKALETVFGKYGRIVEVLLIKDRETNKSRGFAFVTFESPADAKDAARDM 69
LF+ L T E+ LE F ++G++ V +KD +AFV FE A A +M
Sbjct: 242 LFVRNLATTVTEEILEKSFSEFGKLERVKKLKD--------YAFVHFEDRGAAVKAMDEM 293
Query: 70 NGKSLDGKAIKVEQATKPSFERGRHGPP---------------PPPRSRGPPRGFGAGRG 114
NGK ++G+ I++ A P +R PPPR P RG G G G
Sbjct: 294 NGKEIEGEEIEIVLAKPPDKKRKERQAARQASRSTAYEDYYYHPPPRMPPPIRGRGRG-G 352
Query: 115 GSGGTRGPPS-------------------RGGHMD-----DGGYSMNFNMS--SSRGPLP 148
G GG PP RGG+ D D GY++ RG P
Sbjct: 353 GRGGYGYPPDYYGYEDYYDDYYGYDYHDYRGGYEDPYYGYDDGYAVRGRGGGRGGRGAPP 412
Query: 149 VKRG---PPPRSGGPSPKRSAPSGLVRSS-SGMGGRAPLSRGRDSYGGPPRREPLPSRRD 204
RG PPPR +R AP G R S G GG A RGR S G R +
Sbjct: 413 PPRGRGAPPPRGRAGYSQRGAPLGPPRGSRGGRGGPAQQQRGRGSRGSRGNR-----GGN 467
Query: 205 VYLSPRDDGYSTKDS-----YSSRDYPSSRDTRDYAPPPRDYTYRDYGHSSSRDDYPSRG 259
V + DGY+ DS + +++ S + DY+ +YG+++ ++
Sbjct: 468 VGGKRKADGYNQPDSKRRQTNNQQNWGSQPIAQQPLQQGGDYS-GNYGYNNDNQEFYQDT 526
Query: 260 YGDR 263
YG +
Sbjct: 527 YGQQ 530
Score = 45.1 bits (105), Expect = 1e-04
Identities = 52/156 (33%), Positives = 53/156 (33%), Gaps = 47/156 (30%)
Query: 234 YAPPPR-DYTYRDYGHSSSRDDY--PSRGYGDRDGYGRDRDYSDHPSGGSYRDSYESYGN 290
Y PPPR R G R Y P YG D Y Y H G Y D Y YG
Sbjct: 335 YHPPPRMPPPIRGRGRGGGRGGYGYPPDYYGYEDYYDDYYGYDYHDYRGGYEDPY--YG- 391
Query: 291 SRSAPLTRGPPPSYGGSSRYDDYSSSRDGYGGSRDSYSSSRSDLYSSCDRVGRQERGLPP 350
YDD + R G GG GR RG PP
Sbjct: 392 -------------------YDDGYAVR-GRGG-------------------GRGGRGAPP 412
Query: 351 SVE-RGYPSSRDSYSSSSRGAPRGAGPGGSRSDRGG 385
RG P R S RGAP G P GSR RGG
Sbjct: 413 PPRGRGAPPPRGRAGYSQRGAPLGP-PRGSRGGRGG 447
Score = 42.7 bits (99), Expect = 6e-04
Identities = 51/159 (32%), Positives = 56/159 (35%), Gaps = 30/159 (18%)
Query: 239 RDYTYRDYG-HSSSRDDYPSRGYG---DRDGYGRDRDYSDHPSGGSYRDSYESYGNSRSA 294
R Y DY H R P RG G R GYG DY Y D Y+ Y
Sbjct: 326 RSTAYEDYYYHPPPRMPPPIRGRGRGGGRGGYGYPPDYY------GYEDYYDDYYGYDYH 379
Query: 295 PLTRGPPPSYGGSSRYDDYSSSRDGYGGSRDSYSSSRSDLYSSCD----RVGRQERGLPP 350
G Y G YDD + R G GG R + R G +RG P
Sbjct: 380 DYRGGYEDPYYG---YDDGYAVR-GRGGGRGGRGAPPPPRGRGAPPPRGRAGYSQRGAPL 435
Query: 351 SVERGYPSSRDSYSSSSRGAP----RGAGPGGSRSDRGG 385
RG S RG P RG G GSR +RGG
Sbjct: 436 GPPRG--------SRGGRGGPAQQQRGRGSRGSRGNRGG 466
Score = 36.2 bits (82), Expect = 0.052
Identities = 18/59 (30%), Positives = 35/59 (59%)
Query: 9 KLFIGGLNTETNEKALETVFGKYGRIVEVLLIKDRETNKSRGFAFVTFESPADAKDAAR 67
++F+G + + E L +F K G I ++ L+ D + ++RG+AF+TF A++A +
Sbjct: 65 EVFVGKIPRDLYEDELVPLFEKAGPIWDLRLMMDPLSGQNRGYAFITFCGKEAAQEAVK 123
Score = 32.3 bits (72), Expect = 0.75
Identities = 26/80 (32%), Positives = 41/80 (51%), Gaps = 4/80 (5%)
Query: 9 KLFIGGL-NTETNEKALETVFGKYGRIVEVLLI-KDRETNKSRGFAFVTFESPADAKDAA 66
+LF+G + +T E LE +V+V+L + + K+RGF F+ +E A A
Sbjct: 146 RLFVGSIPKNKTKENILEEFSKVTEGLVDVILYHQPDDKKKNRGFCFLEYEDHKSAAQAR 205
Query: 67 RD-MNGK-SLDGKAIKVEQA 84
R M+GK + G + VE A
Sbjct: 206 RRLMSGKVKVWGNVVTVEWA 225
>gi|5031755 heterogeneous nuclear ribonucleoprotein R isoform 2
[Homo sapiens]
Length = 633
Score = 85.9 bits (211), Expect = 6e-17
Identities = 88/304 (28%), Positives = 123/304 (40%), Gaps = 65/304 (21%)
Query: 10 LFIGGLNTETNEKALETVFGKYGRIVEVLLIKDRETNKSRGFAFVTFESPADAKDAARDM 69
LF+ L T E+ LE F ++G++ V +KD +AFV FE A A +M
Sbjct: 343 LFVRNLATTVTEEILEKSFSEFGKLERVKKLKD--------YAFVHFEDRGAAVKAMDEM 394
Query: 70 NGKSLDGKAIKVEQATKPSFERGRHGPP---------------PPPRSRGPPRGFGAGRG 114
NGK ++G+ I++ A P +R PPPR P RG G G G
Sbjct: 395 NGKEIEGEEIEIVLAKPPDKKRKERQAARQASRSTAYEDYYYHPPPRMPPPIRGRGRG-G 453
Query: 115 GSGGTRGPPS-------------------RGGHMD-----DGGYSMNFNMS--SSRGPLP 148
G GG PP RGG+ D D GY++ RG P
Sbjct: 454 GRGGYGYPPDYYGYEDYYDDYYGYDYHDYRGGYEDPYYGYDDGYAVRGRGGGRGGRGAPP 513
Query: 149 VKRG---PPPRSGGPSPKRSAPSGLVRSS-SGMGGRAPLSRGRDSYGGPPRREPLPSRRD 204
RG PPPR +R AP G R S G GG A RGR S G R +
Sbjct: 514 PPRGRGAPPPRGRAGYSQRGAPLGPPRGSRGGRGGPAQQQRGRGSRGSRGNR-----GGN 568
Query: 205 VYLSPRDDGYSTKDS-----YSSRDYPSSRDTRDYAPPPRDYTYRDYGHSSSRDDYPSRG 259
V + DGY+ DS + +++ S + DY+ +YG+++ ++
Sbjct: 569 VGGKRKADGYNQPDSKRRQTNNQQNWGSQPIAQQPLQQGGDYS-GNYGYNNDNQEFYQDT 627
Query: 260 YGDR 263
YG +
Sbjct: 628 YGQQ 631
Score = 45.1 bits (105), Expect = 1e-04
Identities = 52/156 (33%), Positives = 53/156 (33%), Gaps = 47/156 (30%)
Query: 234 YAPPPR-DYTYRDYGHSSSRDDY--PSRGYGDRDGYGRDRDYSDHPSGGSYRDSYESYGN 290
Y PPPR R G R Y P YG D Y Y H G Y D Y YG
Sbjct: 436 YHPPPRMPPPIRGRGRGGGRGGYGYPPDYYGYEDYYDDYYGYDYHDYRGGYEDPY--YG- 492
Query: 291 SRSAPLTRGPPPSYGGSSRYDDYSSSRDGYGGSRDSYSSSRSDLYSSCDRVGRQERGLPP 350
YDD + R G GG GR RG PP
Sbjct: 493 -------------------YDDGYAVR-GRGG-------------------GRGGRGAPP 513
Query: 351 SVE-RGYPSSRDSYSSSSRGAPRGAGPGGSRSDRGG 385
RG P R S RGAP G P GSR RGG
Sbjct: 514 PPRGRGAPPPRGRAGYSQRGAPLGP-PRGSRGGRGG 548
Score = 42.7 bits (99), Expect = 6e-04
Identities = 51/159 (32%), Positives = 56/159 (35%), Gaps = 30/159 (18%)
Query: 239 RDYTYRDYG-HSSSRDDYPSRGYG---DRDGYGRDRDYSDHPSGGSYRDSYESYGNSRSA 294
R Y DY H R P RG G R GYG DY Y D Y+ Y
Sbjct: 427 RSTAYEDYYYHPPPRMPPPIRGRGRGGGRGGYGYPPDYY------GYEDYYDDYYGYDYH 480
Query: 295 PLTRGPPPSYGGSSRYDDYSSSRDGYGGSRDSYSSSRSDLYSSCD----RVGRQERGLPP 350
G Y G YDD + R G GG R + R G +RG P
Sbjct: 481 DYRGGYEDPYYG---YDDGYAVR-GRGGGRGGRGAPPPPRGRGAPPPRGRAGYSQRGAPL 536
Query: 351 SVERGYPSSRDSYSSSSRGAP----RGAGPGGSRSDRGG 385
RG S RG P RG G GSR +RGG
Sbjct: 537 GPPRG--------SRGGRGGPAQQQRGRGSRGSRGNRGG 567
Score = 36.2 bits (82), Expect = 0.052
Identities = 18/59 (30%), Positives = 35/59 (59%)
Query: 9 KLFIGGLNTETNEKALETVFGKYGRIVEVLLIKDRETNKSRGFAFVTFESPADAKDAAR 67
++F+G + + E L +F K G I ++ L+ D + ++RG+AF+TF A++A +
Sbjct: 166 EVFVGKIPRDLYEDELVPLFEKAGPIWDLRLMMDPLSGQNRGYAFITFCGKEAAQEAVK 224
Score = 32.3 bits (72), Expect = 0.75
Identities = 26/80 (32%), Positives = 41/80 (51%), Gaps = 4/80 (5%)
Query: 9 KLFIGGL-NTETNEKALETVFGKYGRIVEVLLI-KDRETNKSRGFAFVTFESPADAKDAA 66
+LF+G + +T E LE +V+V+L + + K+RGF F+ +E A A
Sbjct: 247 RLFVGSIPKNKTKENILEEFSKVTEGLVDVILYHQPDDKKKNRGFCFLEYEDHKSAAQAR 306
Query: 67 RD-MNGK-SLDGKAIKVEQA 84
R M+GK + G + VE A
Sbjct: 307 RRLMSGKVKVWGNVVTVEWA 326
>gi|15055543 splicing factor, arginine/serine-rich 2B [Homo sapiens]
Length = 282
Score = 85.9 bits (211), Expect = 6e-17
Identities = 91/293 (31%), Positives = 115/293 (39%), Gaps = 55/293 (18%)
Query: 10 LFIGGLNTETNEKALETVFGKYGRIVEVLLIKDRETNKSRGFAFVTFESPADAKDAARDM 69
L + L T+ +L VF KYGR+ +V + ++ T RGFAFV F DA+DA M
Sbjct: 16 LKVDNLTYRTSPDSLRRVFEKYGRVGDVYIPREPHTKAPRGFAFVRFHDRRDAQDAEAAM 75
Query: 70 NGKSLDGKAIKVEQATKPSFERGRHGPPPPPRSR-GPPRGFGAGRGGSGGTRGPPSRGGH 128
+G LDG+ ++V+ A R+G PRSR G PR G RGG G R
Sbjct: 76 DGAELDGRELRVQVA--------RYGRRDLPRSRQGEPR--GRSRGGGYGRR-------- 117
Query: 129 MDDGGYSMNFNMSSSRGPLPVKRGPPPRSGGPSPKRSAPSGLVRSSSGMGGRAPLSRGRD 188
+ S R +R RS GPS RS R S R+P SR
Sbjct: 118 ----------SRSYGRRSRSPRRRHRSRSRGPSCSRSRSRSRYRGS--RYSRSPYSRSPY 165
Query: 189 SYGGPPRREPLPSRRDVYLSPRDDGYSTKDSYSSRDYPSSRDTRDYAPPPRDYTYRDYGH 248
S R P R Y R G YSS Y +SR +R ++ H
Sbjct: 166 SRS---RYSRSPYSRSRYRESRYGG----SHYSSSGYSNSRYSRYHS---------SRSH 209
Query: 249 SSSRDDYPSRGYGDRDGYGRDRDYSDHPSGGSYRDSYESYGNSRSAPLTRGPP 301
S S SR R S S S SRS+ +TR PP
Sbjct: 210 SKSGSSTSSRSASTSKSSSARRSKSSSVS--------RSRSRSRSSSMTRSPP 254
Score = 36.2 bits (82), Expect = 0.052
Identities = 65/227 (28%), Positives = 77/227 (33%), Gaps = 48/227 (21%)
Query: 160 PSPKRSAPSGLVRSSSGMGGRAPLSRGRDSYGGPPRREPLPSRRDVYLSPRDDGYSTKDS 219
P ++ P G RS G GR S GR S P RR SR G S S
Sbjct: 98 PRSRQGEPRG--RSRGGGYGRRSRSYGRRSRS-PRRRHRSRSR----------GPSCSRS 144
Query: 220 YSSRDYPSSRDTRDYAPPPRDYTYRDYGHSSSRDDYPSRGYGDRDGYGRDRDYSDHPSGG 279
S Y SR +R SR Y SR R Y R R Y + GG
Sbjct: 145 RSRSRYRGSRYSRS---------------PYSRSPY-SRSRYSRSPYSRSR-YRESRYGG 187
Query: 280 SYRDSYESYGNSRSAPLTRGPPPSYGGSSRYDDYSSSRDGYGGSRDSYSSSRSDLYSSCD 339
S+ S Y NSR + Y S + SS S SS+R SS
Sbjct: 188 SHYSS-SGYSNSRYS--------RYHSSRSHSKSGSSTSSRSASTSKSSSARRSKSSSVS 238
Query: 340 RVGRQERG-----LPPSVERGYPSSRDSYSSSSRGAPRGAGPGGSRS 381
R + R PP V + SR S S+ P+ G S
Sbjct: 239 RSRSRSRSSSMTRSPPRVSKRKSKSR----SRSKRPPKSPEEEGQMS 281
>gi|47271443 splicing factor, arginine/serine-rich 2 [Homo sapiens]
Length = 221
Score = 82.0 bits (201), Expect = 8e-16
Identities = 67/189 (35%), Positives = 86/189 (45%), Gaps = 15/189 (7%)
Query: 10 LFIGGLNTETNEKALETVFGKYGRIVEVLLIKDRETNKSRGFAFVTFESPADAKDAARDM 69
L + L T+ L VF KYGR+ +V + +DR T +SRGFAFV F DA+DA M
Sbjct: 16 LKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAM 75
Query: 70 NGKSLDGKAIKVEQATKPSFERGRHGPPPP---PRSRGPPRGFGAGRGGSGGTRGPPSRG 126
+G LDG+ ++V+ A R+G PP R PPR +G GG G P R
Sbjct: 76 DGAVLDGRELRVQMA--------RYGRPPDSHHSRRGPPPRRYGG--GGYGRRSRSPRRR 125
Query: 127 GHMDDGGYSMNFNMSSSRGPLPVKRG-PPPRSGGPSPKRSAPSGLVRSSSGMGGRAPLSR 185
S + + S SR R RS S RSA +SSS R+ SR
Sbjct: 126 RRSRSRSRSRSRSRSRSRYSRSKSRSRTRSRSRSTSKSRSARRSKSKSSSVSRSRS-RSR 184
Query: 186 GRDSYGGPP 194
R PP
Sbjct: 185 SRSRSRSPP 193
>gi|25470886 DAZ associated protein 1 isoform b [Homo sapiens]
Length = 407
Score = 80.9 bits (198), Expect = 2e-15
Identities = 83/309 (26%), Positives = 122/309 (39%), Gaps = 48/309 (15%)
Query: 6 RPGKLFIGGLNTETNEKALETVFGKYGRIVEVLLIKDRETNKSRGFAFVTFESPADAKDA 65
+ K+F+GG+ E L F K+G + EV++I D E + RGF F+TFE + D
Sbjct: 111 KSNKIFVGGIPHNCGETELREYFKKFGVVTEVVMIYDAEKQRPRGFGFITFED-EQSVDQ 169
Query: 66 ARDMNGKSLDGKAIKVEQATKPSFERGRHGPPPPPRSRGPPRGFGAGRGGSGGTRGPPSR 125
A +M+ + GK ++V++A +P + + P P S+ R G G P +
Sbjct: 170 AVNMHFHDIMGKKVEVKRA-EPRDSKSQ-APGQPGASQWGSRVVPNAANGWAGQPPPTWQ 227
Query: 126 GGHMDDGGYSMNFNMSSSRGPLPVKRGPPPRSGGPSPKRSAPSGLVRSSSGMGGRAPLSR 185
G+ G + GP P RG PP P P P S+ GG P
Sbjct: 228 QGYGPQGMWVPAGQAIGGYGPPPAGRGAPP----PPP----PFTSYIVSTPPGGFPPPQG 279
Query: 186 GRDSYGGPPRRE----PLPSRRDVYLSPRDDGYSTKDSYSSRDY--PSSRDTRDYAPPPR 239
YG PP+ P P D + P + + P S+ D + PP
Sbjct: 280 FPQGYGAPPQFSFGYGPPPPPPDQFAPPGVPPPPATPGAAPLAFPPPPSQAAPDMSKPP- 338
Query: 240 DYTYRDYGHSSSRDDYPSRGYGDRDGYGRDRDYSDHPSGGSYRDSYESYGNSRSAPLTRG 299
+++ D+P YG GYG+D +G S P +
Sbjct: 339 ----------TAQPDFP---YGQYAGYGQD---------------LSGFGQGFSDPSQQ- 369
Query: 300 PPPSYGGSS 308
PPSYGG S
Sbjct: 370 -PPSYGGPS 377
Score = 68.9 bits (167), Expect = 7e-12
Identities = 38/103 (36%), Positives = 58/103 (56%), Gaps = 5/103 (4%)
Query: 4 ADRPGKLFIGGLNTETNEKALETVFGKYGRIVEVLLIKDRETNKSRGFAFVTFESPADAK 63
AD GKLF+GGL+ T ++ L + F +YG +V+ +++KD+ TN+SRGF FV F+ P +
Sbjct: 6 ADEIGKLFVGGLDWSTTQETLRSYFSQYGEVVDCVIMKDKTTNQSRGFGFVKFKDP-NCV 64
Query: 64 DAARDMNGKSLDGKAIKVEQAT----KPSFERGRHGPPPPPRS 102
+LDG+ I + T +P R + G PRS
Sbjct: 65 GTVLASRPHTLDGRNIDPKPCTPRGMQPERTRPKEGWQKGPRS 107
>gi|9558733 transformer-2 alpha [Homo sapiens]
Length = 282
Score = 79.7 bits (195), Expect = 4e-15
Identities = 57/165 (34%), Positives = 76/165 (46%), Gaps = 14/165 (8%)
Query: 10 LFIGGLNTETNEKALETVFGKYGRIVEVLLIKDRETNKSRGFAFVTFESPADAKDAARDM 69
L + GL+ T E+ L VF +YG + V ++ D+ T +SRGFAFV FE D+K+A
Sbjct: 121 LGVFGLSLYTTERDLREVFSRYGPLSGVNVVYDQRTGRSRGFAFVYFERIDDSKEAMERA 180
Query: 70 NGKSLDGKAIKVEQATKPSFERGRHGPPPPPRSRGPPR-GFGAGRGGSGGTRGPPSRGGH 128
NG LDG+ I+V+ S + H P P P G G G GG GG G R
Sbjct: 181 NGMELDGRRIRVDY----SITKRAHTPTPGIYMGRPTHSGGGGGGGGGGGGGGGGRRRDS 236
Query: 129 MDDGGYSMNFNMSSSRGPLPVKRGPPP---------RSGGPSPKR 164
D GY ++ +R P P RS SP+R
Sbjct: 237 YYDRGYDRGYDRYEDYDYRYRRRSPSPYYSRYRSRSRSRSYSPRR 281
Score = 33.9 bits (76), Expect = 0.26
Identities = 57/247 (23%), Positives = 84/247 (34%), Gaps = 32/247 (12%)
Query: 152 GPPPRSGGPSPKRSAPSGLVRSSSGMGGRAP--LSRGRDSYGGPPRREPLPSRRDV---Y 206
G RS SP + V+S S G R+P +S+ +S+ + SRR Y
Sbjct: 11 GRESRSQSKSP--TGTPARVKSESRSGSRSPSRVSKHSESHSRSRSKSRSRSRRHSHRRY 68
Query: 207 LSPRDDGYSTKDSYSSRDY-PSSRDTRDYAPPPRDYTYRDYGHSSSRDDYPSRGYGDRDG 265
R +S + SR Y P R R + P R G ++ D G
Sbjct: 69 TRSRSHSHSHRRRSRSRSYTPEYRRRRSRSHSPMSNRRRHTGSRANPDPNTCLGVFGLSL 128
Query: 266 YGRDRDYSDHPSGGSYRDSYESYGNSRSAPLTRGPPPSYGGSSRYDDYSSSRDGYGG--- 322
Y +RD R+ + YG P G + YD + G+
Sbjct: 129 YTTERDL---------REVFSRYG------------PLSGVNVVYDQRTGRSRGFAFVYF 167
Query: 323 SRDSYSSSRSDLYSSCDRVGRQERGLPPSVERGYPSSRDSYSSSSRGAPRGAGPGGSRSD 382
R S + + + GR+ R +R + + Y + G G GG
Sbjct: 168 ERIDDSKEAMERANGMELDGRRIRVDYSITKRAHTPTPGIYMGRPTHSGGGGGGGGGGGG 227
Query: 383 RGGGRSR 389
GGGR R
Sbjct: 228 GGGGRRR 234
>gi|14043070 heterogeneous nuclear ribonucleoprotein A1 isoform b
[Homo sapiens]
Length = 372
Score = 79.3 bits (194), Expect = 5e-15
Identities = 72/214 (33%), Positives = 96/214 (44%), Gaps = 35/214 (16%)
Query: 3 EADRPG------KLFIGGLNTETNEKALETVFGKYGRIVEVLLIKDRETNKSRGFAFVTF 56
++ RPG K+F+GG+ +T E L F +YG+I + ++ DR + K RGFAFVTF
Sbjct: 94 DSQRPGAHLTVKKIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTF 153
Query: 57 ESPADAKDAA-----RDMNGKSLD-GKAI-KVEQATKPSFERGRHGPPPPPRSRGPPRGF 109
+ D+ D +NG + + KA+ K E A+ S +RGR G RG GF
Sbjct: 154 DD-HDSVDKIVIQKYHTVNGHNCEVRKALSKQEMASASSSQRGRSGSGNFGGGRG--GGF 210
Query: 110 G-----------AGRGGSGGTRGPPSRGGHMDDGGYSMNFNMSSSRGPLPVKRGPPPRSG 158
G +GRGG GG+RG GG D GY+ N G G P SG
Sbjct: 211 GGNDNFGRGGNFSGRGGFGGSRGGGGYGGSGD--GYNGFGNDGGYGG------GGPGYSG 262
Query: 159 GPSPKRSAPSGLVRSSSGMGGRAPLSRGRDSYGG 192
G S G SG GG + GG
Sbjct: 263 GSRGYGSGGQGYGNQGSGYGGSGSYDSYNNGGGG 296
Score = 73.2 bits (178), Expect = 4e-13
Identities = 93/373 (24%), Positives = 145/373 (38%), Gaps = 55/373 (14%)
Query: 3 EADRPGKLFIGGLNTETNEKALETVFGKYGRIVEVLLIKDRETNKSRGFAFVTFESPADA 62
E ++ KLFIGGL+ ET +++L + F ++G + + ++++D T +SRGF FVT+ + +
Sbjct: 9 EPEQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTY-ATVEE 67
Query: 63 KDAARDMNGKSLDGKAIKVEQAT--KPSFERGRH--------GPPPPPRSRGPPRGFGAG 112
DAA + +DG+ ++ ++A + S G H G R +
Sbjct: 68 VDAAMNARPHKVDGRVVEPKRAVSREDSQRPGAHLTVKKIFVGGIKEDTEEHHLRDYFEQ 127
Query: 113 RGGSGGTRGPPSRGGHMDDGGYSMNFNMSSSRGPLPVKR-------GPPPRSGGPSPKRS 165
G RG G + F+ S + +++ R + +
Sbjct: 128 YGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQKYHTVNGHNCEVRKALSKQEMA 187
Query: 166 APSGLVRSSSGMG----------------GRAPLSRGRDSYGGPPRREPLPSRRDVYLSP 209
+ S R SG G GR GR +GG D Y
Sbjct: 188 SASSSQRGRSGSGNFGGGRGGGFGGNDNFGRGGNFSGRGGFGGSRGGGGYGGSGDGY--- 244
Query: 210 RDDGYSTKDSYSSRDYPSSRDTRDYAPPPRDYTYR--DYGHSSSRDDYPSRGYGDRDGYG 267
+G+ Y S +R Y + Y + YG S S D Y + G G G+G
Sbjct: 245 --NGFGNDGGYGGGGPGYSGGSRGYGSGGQGYGNQGSGYGGSGSYDSYNNGGGG---GFG 299
Query: 268 RDRDYSDHPSGGSYRDSYESYGNSRS--APLTRG-----PPPSYGGSSRYDDYSSSRDGY 320
S+ GGSY D + +Y N S P+ G YGG +Y ++ GY
Sbjct: 300 GGSG-SNFGGGGSYND-FGNYNNQSSNFGPMKGGNFGGRSSGPYGGGGQYFAKPRNQGGY 357
Query: 321 GG--SRDSYSSSR 331
GG S SY S R
Sbjct: 358 GGSSSSSSYGSGR 370
Score = 38.9 bits (89), Expect = 0.008
Identities = 41/130 (31%), Positives = 48/130 (36%), Gaps = 27/130 (20%)
Query: 259 GYGDRDGYGRDRDYSDHPSGGSYRDSYESYGNSRSAPLTRGPPPSYGGSSRYDDYSSSRD 318
G+G D +GR ++S GG +G SR G Y G Y
Sbjct: 209 GFGGNDNFGRGGNFSGR--GG--------FGGSRGGGGYGGSGDGYNGFGNDGGYGGGGP 258
Query: 319 GYGGSRDSYSSSRSDLYSSCDRVGRQERGLPPSVERGYPSSRDSYSSSSRGAPRGAGPGG 378
GY G Y S G Q G S GY S SY S + G G G GG
Sbjct: 259 GYSGGSRGYGS------------GGQGYGNQGS---GYGGS-GSYDSYNNGGGGGFG-GG 301
Query: 379 SRSDRGGGRS 388
S S+ GGG S
Sbjct: 302 SGSNFGGGGS 311
Score = 29.3 bits (64), Expect = 6.4
Identities = 30/106 (28%), Positives = 37/106 (34%), Gaps = 17/106 (16%)
Query: 289 GNSRSAPLTRGPPPSYGGSSRYDDYS--SSRDGYGGSRDS--YSSSRSDLYSSCDRVGRQ 344
G S S G +GG+ + S R G+GGSR Y S D Y+ G
Sbjct: 195 GRSGSGNFGGGRGGGFGGNDNFGRGGNFSGRGGFGGSRGGGGYGGS-GDGYNGFGNDG-- 251
Query: 345 ERGLPPSVERGYPSSRDSYSSSSRGAPRGAGPGGSRSDRGGGRSRY 390
GY YS SRG G G++ GG Y
Sbjct: 252 ----------GYGGGGPGYSGGSRGYGSGGQGYGNQGSGYGGSGSY 287
>gi|34740329 heterogeneous nuclear ribonucleoprotein A3 [Homo
sapiens]
Length = 378
Score = 78.2 bits (191), Expect = 1e-14
Identities = 89/325 (27%), Positives = 119/325 (36%), Gaps = 76/325 (23%)
Query: 9 KLFIGGLNTETNEKALETVFGKYGRIVEVLLIKDRETNKSRGFAFVTFESPADAKDAARD 68
K+F+GG+ +T E L F KYG+I + +++DR++ K RGFAFVTF+ D D
Sbjct: 127 KIFVGGIKEDTEEYNLRDYFEKYGKIETIEVMEDRQSGKKRGFAFVTFDD-HDTVDKIVV 185
Query: 69 MNGKSLDGKAIKVEQATKPSFERGRHGPPPPPRSRGPPRGFGAGRGGSGGTRGPPSRGGH 128
+++G +V++A +S G RG G GGSG G RGG+
Sbjct: 186 QKYHTINGHNCEVKKALSKQ----------EMQSAGSQRGRG---GGSGNFMG---RGGN 229
Query: 129 MDDGGYSMNFNMSSSRGPLPVKRGPPPRSGGPSPKRSAPSGLVRSSSGMGGRAPLSRGRD 188
GG NF + G G GG R + G +G GG
Sbjct: 230 FGGGG--GNFGRGGNFG------GRGGYGGGGGGSRGSYGGGDGGYNGFGGDG------G 275
Query: 189 SYGGPPRREPLPSRRDVYLSPRDDGYSTKDSYSSRDYPSSRDTRDYAPPPRDYTYRDYGH 248
+YGG P GYS++ Y P YG
Sbjct: 276 NYGGGP------------------GYSSRGGYGG------------GGPGYGNQGGGYGG 305
Query: 249 SSSRDDYPSRGYGDRDGYGRDRDYSDHPSGGSYRD--SYESYGNSRSAPLTRGPPPSYGG 306
D Y G YG GG+Y D +Y S P+ G S+GG
Sbjct: 306 GGGYDGYNEGGNFGGGNYG---------GGGNYNDFGNYSGQQQSNYGPMKGG---SFGG 353
Query: 307 SSRYDDYSSSRDGYGGSRDSYSSSR 331
S Y G GG Y S R
Sbjct: 354 RSSGSPYGGGY-GSGGGSGGYGSRR 377
>gi|4504445 heterogeneous nuclear ribonucleoprotein A1 isoform a
[Homo sapiens]
Length = 320
Score = 75.1 bits (183), Expect = 1e-13
Identities = 79/235 (33%), Positives = 104/235 (44%), Gaps = 51/235 (21%)
Query: 3 EADRPG------KLFIGGLNTETNEKALETVFGKYGRIVEVLLIKDRETNKSRGFAFVTF 56
++ RPG K+F+GG+ +T E L F +YG+I + ++ DR + K RGFAFVTF
Sbjct: 94 DSQRPGAHLTVKKIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTF 153
Query: 57 ESPADAKDAA-----RDMNGKSLD-GKAI-KVEQATKPSFERGRHGPPPPPRSRGPPRGF 109
+ D+ D +NG + + KA+ K E A+ S +RGR G RG GF
Sbjct: 154 DD-HDSVDKIVIQKYHTVNGHNCEVRKALSKQEMASASSSQRGRSGSGNFGGGRG--GGF 210
Query: 110 G-----------AGRGGSGGTRGPPSRGGHMD------------DGGYSMN-----FNMS 141
G +GRGG GG+RG GG D GG S N N S
Sbjct: 211 GGNDNFGRGGNFSGRGGFGGSRGGGGYGGSGDGYNGFGNDGSNFGGGGSYNDFGNYNNQS 270
Query: 142 SSRGPLPVKRGP-PPRSGGPSPKRSAPSGLVRSSSGMGGRAPLSRGRDSYGGPPR 195
S+ GP+ K G RS GP R+ G GG S SYG R
Sbjct: 271 SNFGPM--KGGNFGGRSSGPYGGGGQYFAKPRNQGGYGG----SSSSSSYGSGRR 319
Score = 59.3 bits (142), Expect = 6e-09
Identities = 28/82 (34%), Positives = 54/82 (65%), Gaps = 1/82 (1%)
Query: 3 EADRPGKLFIGGLNTETNEKALETVFGKYGRIVEVLLIKDRETNKSRGFAFVTFESPADA 62
E ++ KLFIGGL+ ET +++L + F ++G + + ++++D T +SRGF FVT+ + +
Sbjct: 9 EPEQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTY-ATVEE 67
Query: 63 KDAARDMNGKSLDGKAIKVEQA 84
DAA + +DG+ ++ ++A
Sbjct: 68 VDAAMNARPHKVDGRVVEPKRA 89
Score = 37.7 bits (86), Expect = 0.018
Identities = 32/84 (38%), Positives = 39/84 (46%), Gaps = 12/84 (14%)
Query: 259 GYGDR-DGY-GRDRDYSDHPSGGSYRDSYESYGNSRS--APLTRG-----PPPSYGGSSR 309
GYG DGY G D S+ GGSY D + +Y N S P+ G YGG +
Sbjct: 236 GYGGSGDGYNGFGNDGSNFGGGGSYND-FGNYNNQSSNFGPMKGGNFGGRSSGPYGGGGQ 294
Query: 310 YDDYSSSRDGYGG--SRDSYSSSR 331
Y ++ GYGG S SY S R
Sbjct: 295 YFAKPRNQGGYGGSSSSSSYGSGR 318
Score = 32.3 bits (72), Expect = 0.75
Identities = 33/124 (26%), Positives = 47/124 (37%), Gaps = 27/124 (21%)
Query: 259 GYGDRDGYGRDRDYSDH------PSGGSY---RDSYESYGNSRSAPLTRGPPPSYGGSSR 309
G+G D +GR ++S GG Y D Y +GN S ++GG
Sbjct: 209 GFGGNDNFGRGGNFSGRGGFGGSRGGGGYGGSGDGYNGFGNDGS---------NFGGGGS 259
Query: 310 YDD---YSSSRDGYGGSRDSYSSSRSDLYSSCDRVGRQERGLPPSVERGY--PSSRDSYS 364
Y+D Y++ +G + R SS G + P + GY SS SY
Sbjct: 260 YNDFGNYNNQSSNFGPMKGGNFGGR----SSGPYGGGGQYFAKPRNQGGYGGSSSSSSYG 315
Query: 365 SSSR 368
S R
Sbjct: 316 SGRR 319
>gi|25470890 DAZ associated protein 1 isoform a [Homo sapiens]
Length = 378
Score = 74.3 bits (181), Expect = 2e-13
Identities = 72/263 (27%), Positives = 105/263 (39%), Gaps = 20/263 (7%)
Query: 6 RPGKLFIGGLNTETNEKALETVFGKYGRIVEVLLIKDRETNKSRGFAFVTFESPADAKDA 65
+ K+F+GG+ E L F K+G + EV++I D E + RGF F+TFE + D
Sbjct: 111 KSNKIFVGGIPHNCGETELREYFKKFGVVTEVVMIYDAEKQRPRGFGFITFED-EQSVDQ 169
Query: 66 ARDMNGKSLDGKAIKVEQATKPSFERGRHGPPPPPRSRGPPRGFGAGRGGSGGTRGPPSR 125
A +M+ + GK ++V++A +P + + P P S+ R G G P +
Sbjct: 170 AVNMHFHDIMGKKVEVKRA-EPRDSKSQ-APGQPGASQWGSRVVPNAANGWAGQPPPTWQ 227
Query: 126 GGHMDDGGYSMNFNMSSSRGPLPVKRGPPPRSGGPSPKRSAPSGLVRSSSGMGGRAPLSR 185
G+ G + GP P RG PP P P P S+ GG P
Sbjct: 228 QGYGPQGMWVPAGQAIGGYGPPPAGRGAPP----PPP----PFTSYIVSTPPGGFPPPQG 279
Query: 186 GRDSYGGPPRRE----PLPSRRDVYLSPRDDGYSTKDSYSSRDY--PSSRDTRDYAPPPR 239
YG PP+ P P D + P + + P S+ D + PP
Sbjct: 280 FPQGYGAPPQFSFGYGPPPPPPDQFAPPGVPPPPATPGAAPLAFPPPPSQAAPDMSKPPT 339
Query: 240 ---DYTYRDYGHSSSRDDYPSRG 259
D+ Y YG S P G
Sbjct: 340 AQPDFPYGQYGLGSYSPAPPGCG 362
Score = 68.9 bits (167), Expect = 7e-12
Identities = 38/103 (36%), Positives = 58/103 (56%), Gaps = 5/103 (4%)
Query: 4 ADRPGKLFIGGLNTETNEKALETVFGKYGRIVEVLLIKDRETNKSRGFAFVTFESPADAK 63
AD GKLF+GGL+ T ++ L + F +YG +V+ +++KD+ TN+SRGF FV F+ P +
Sbjct: 6 ADEIGKLFVGGLDWSTTQETLRSYFSQYGEVVDCVIMKDKTTNQSRGFGFVKFKDP-NCV 64
Query: 64 DAARDMNGKSLDGKAIKVEQAT----KPSFERGRHGPPPPPRS 102
+LDG+ I + T +P R + G PRS
Sbjct: 65 GTVLASRPHTLDGRNIDPKPCTPRGMQPERTRPKEGWQKGPRS 107
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.310 0.135 0.406
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 22,108,467
Number of Sequences: 37866
Number of extensions: 1565768
Number of successful extensions: 15711
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 435
Number of HSP's successfully gapped in prelim test: 934
Number of HSP's that attempted gapping in prelim test: 8577
Number of HSP's gapped (non-prelim): 5233
length of query: 390
length of database: 18,247,518
effective HSP length: 104
effective length of query: 286
effective length of database: 14,309,454
effective search space: 4092503844
effective search space used: 4092503844
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.7 bits)
S2: 63 (28.9 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.