Guide to the Human Genome
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Name: LOC644538 Sequence: fasta or formatted (161aa) NCBI GI: 113430126
Description:

PREDICTED: hypothetical protein

Not currently referenced in the text

Other entries for this name:
alt mRNA {161aa} PREDICTED: hypothetical protein
alt prot {202aa} PREDICTED: hypothetical protein
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             9.3         15           4
 C cysteine            1.2          2           1
 D aspartate           1.9          3           1
 E glutamate           0.6          1           1
 F phenylalanine       4.3          7           2
 G glycine            12.4         20           2
 H histidine           3.1          5           1
 I isoleucine          4.3          7           2
 K lysine              3.1          5           1
 L leucine             9.9         16           2
 M methionine          2.5          4           1
 N asparagine          1.2          2           1
 P proline             6.2         10           2
 Q glutamine           3.1          5           1
 R arginine            8.7         14           1
 S serine             11.8         19           3
 T threonine           4.3          7           1
 V valine              6.2         10           1
 W tryptophan          1.9          3           1
 Y tyrosine            3.7          6           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: hypothetical protein 
LOC644538             1.000   PREDICTED: hypothetical protein 
LOC644538             0.898   PREDICTED: hypothetical protein 
LOC100129361          0.204   PREDICTED: similar to mCG115122 
LOC100129361          0.204   PREDICTED: similar to mCG115122 
LOC100129361          0.204   PREDICTED: similar to mCG115122 
KIAA1949              0.033   phostensin 
KIAA1949              0.033   phostensin 
MEF2A                 0.030   myocyte enhancer factor 2A isoform 4 
MEF2A                 0.030   myocyte enhancer factor 2A isoform 2 
MEF2A                 0.030   myocyte enhancer factor 2A isoform 1 
TAF10                 0.026   TBP-related factor 10 
PTPN23                0.026   protein tyrosine phosphatase, non-receptor type 23 [...
LGALS3                0.023   galectin 3 
POU3F3                0.023   POU class 3 homeobox 3 
PAWR                  0.020   PRKC, apoptosis, WT1, regulator 
LOC100129376          0.016   PREDICTED: hypothetical protein 
LOC100129376          0.016   PREDICTED: hypothetical protein 
LOC100129376          0.016   PREDICTED: hypothetical protein 
DAZAP1                0.016   DAZ associated protein 1 isoform a 
DAZAP1                0.016   DAZ associated protein 1 isoform b 
LOC100286949          0.016   PREDICTED: hypothetical protein XP_002342730 
SILV                  0.016   silver homolog 
JUB                   0.016   ajuba isoform 1 
LOC100127930          0.013   PREDICTED: hypothetical protein 
LOC100292599          0.013   PREDICTED: similar to hCG2002101 
LOC100128362          0.013   PREDICTED: similar to protein phosphatase 2, cataly...
ZNF219                0.013   zinc finger protein 219 
ZNF219                0.013   zinc finger protein 219 
ZNF219                0.013   zinc finger protein 219 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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