Guide to the Human Genome
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Name: LOC100129361 Sequence: fasta or formatted (68aa) NCBI GI: 169204585
Description:

PREDICTED: similar to mCG115122

Not currently referenced in the text

Other entries for this name:
alt mRNA {68aa} PREDICTED: similar to mCG115122
alt mRNA {68aa} PREDICTED: similar to mCG115122
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine            16.2         11           3
 C cysteine            1.5          1           1
 D aspartate           0.0          0           0
 E glutamate           1.5          1           1
 F phenylalanine       7.4          5           2
 G glycine             4.4          3           1
 H histidine           1.5          1           1
 I isoleucine          4.4          3           1
 K lysine              1.5          1           1
 L leucine            11.8          8           2
 M methionine          2.9          2           1
 N asparagine          2.9          2           1
 P proline             7.4          5           1
 Q glutamine           2.9          2           1
 R arginine            5.9          4           1
 S serine             10.3          7           2
 T threonine           4.4          3           1
 V valine              7.4          5           1
 W tryptophan          1.5          1           1
 Y tyrosine            4.4          3           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: similar to mCG115122 
LOC100129361          1.000   PREDICTED: similar to mCG115122 
LOC100129361          1.000   PREDICTED: similar to mCG115122 
LOC644538             0.554   PREDICTED: hypothetical protein 
LOC644538             0.554   PREDICTED: hypothetical protein 
LOC644538             0.554   PREDICTED: hypothetical protein 
SELV                  0.027   selenoprotein V 
SLC17A2               0.018   solute carrier family 17 (sodium phosphate), member 2...
TMEM158               0.009   Ras-induced senescence 1 
AKTIP                 0.009   AKT interacting protein 
AKTIP                 0.009   AKT interacting protein 
CDC42EP1              0.009   CDC42 effector protein 1 
KDELR1                0.009   KDEL (Lys-Asp-Glu-Leu) endoplasmic reticulum protein ...
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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