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Search of human proteins with 113428351
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|113428351 PREDICTED: hypothetical protein [Homo sapiens]
(186 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|113428351 PREDICTED: hypothetical protein [Homo sapiens] 402 e-112
gi|169214011 PREDICTED: hypothetical protein [Homo sapiens] 400 e-112
gi|113428768 PREDICTED: hypothetical protein [Homo sapiens] 400 e-112
gi|239755187 PREDICTED: similar to hemicentin 2 [Homo sapiens] 47 7e-06
gi|32698936 B-cell CLL/lymphoma 9-like [Homo sapiens] 44 1e-04
gi|122056628 prion protein preproprotein [Homo sapiens] 41 5e-04
gi|122056625 prion protein preproprotein [Homo sapiens] 41 5e-04
gi|122056623 prion protein preproprotein [Homo sapiens] 41 5e-04
gi|34335270 prion protein preproprotein [Homo sapiens] 41 5e-04
gi|4506113 prion protein preproprotein [Homo sapiens] 41 5e-04
gi|163965366 nascent polypeptide-associated complex alpha subuni... 40 0.001
gi|239757686 PREDICTED: hypothetical protein [Homo sapiens] 39 0.003
gi|239752176 PREDICTED: hypothetical protein [Homo sapiens] 39 0.003
gi|85815829 SH3-domain binding protein 1 [Homo sapiens] 39 0.003
gi|239756943 PREDICTED: hypothetical protein [Homo sapiens] 38 0.004
gi|239751443 PREDICTED: hypothetical protein [Homo sapiens] 38 0.004
gi|239745948 PREDICTED: hypothetical protein XP_002343622 [Homo ... 38 0.004
gi|7706469 Kruppel-like factor [Homo sapiens] 38 0.004
gi|54607124 RNA binding motif protein 15B [Homo sapiens] 38 0.004
gi|38194229 kelch-like 17 [Homo sapiens] 38 0.004
gi|228008400 synaptotagmin binding, cytoplasmic RNA interacting ... 38 0.006
gi|228008398 synaptotagmin binding, cytoplasmic RNA interacting ... 38 0.006
gi|228008396 synaptotagmin binding, cytoplasmic RNA interacting ... 38 0.006
gi|228008293 synaptotagmin binding, cytoplasmic RNA interacting ... 38 0.006
gi|115430223 galectin 3 [Homo sapiens] 38 0.006
gi|92859678 small nuclear RNA activating complex, polypeptide 4,... 38 0.006
gi|146134388 YLP motif containing 1 [Homo sapiens] 38 0.006
gi|239757099 PREDICTED: hypothetical protein [Homo sapiens] 37 0.008
gi|239751605 PREDICTED: hypothetical protein XP_002347934 [Homo ... 37 0.008
gi|239746122 PREDICTED: hypothetical protein XP_002344202 [Homo ... 37 0.008
>gi|113428351 PREDICTED: hypothetical protein [Homo sapiens]
Length = 186
Score = 402 bits (1032), Expect = e-112
Identities = 186/186 (100%), Positives = 186/186 (100%)
Query: 1 MEQPKDGAGPEGNNLSLPSSGTEPWPPAPLPAPPPLLLNSTDPTHLGLPESVASVTVPIR 60
MEQPKDGAGPEGNNLSLPSSGTEPWPPAPLPAPPPLLLNSTDPTHLGLPESVASVTVPIR
Sbjct: 1 MEQPKDGAGPEGNNLSLPSSGTEPWPPAPLPAPPPLLLNSTDPTHLGLPESVASVTVPIR 60
Query: 61 LDTLSCLLHSALLGAYTFQQALPSCPCCSQAGHSQPGAVRRPPRGRGGWEVRHRPGWGRG 120
LDTLSCLLHSALLGAYTFQQALPSCPCCSQAGHSQPGAVRRPPRGRGGWEVRHRPGWGRG
Sbjct: 61 LDTLSCLLHSALLGAYTFQQALPSCPCCSQAGHSQPGAVRRPPRGRGGWEVRHRPGWGRG 120
Query: 121 LHRRGLGRAEQPERGRAGGPGAGPRTPPMTLPSPPTLPAQDGKKEARGPEPPLETPLAAE 180
LHRRGLGRAEQPERGRAGGPGAGPRTPPMTLPSPPTLPAQDGKKEARGPEPPLETPLAAE
Sbjct: 121 LHRRGLGRAEQPERGRAGGPGAGPRTPPMTLPSPPTLPAQDGKKEARGPEPPLETPLAAE 180
Query: 181 DWETEY 186
DWETEY
Sbjct: 181 DWETEY 186
>gi|169214011 PREDICTED: hypothetical protein [Homo sapiens]
Length = 186
Score = 400 bits (1027), Expect = e-112
Identities = 185/186 (99%), Positives = 186/186 (100%)
Query: 1 MEQPKDGAGPEGNNLSLPSSGTEPWPPAPLPAPPPLLLNSTDPTHLGLPESVASVTVPIR 60
MEQPKDGAGPEGNNLSLPSSGTEPWPPAPLPAPPPLLL+STDPTHLGLPESVASVTVPIR
Sbjct: 1 MEQPKDGAGPEGNNLSLPSSGTEPWPPAPLPAPPPLLLSSTDPTHLGLPESVASVTVPIR 60
Query: 61 LDTLSCLLHSALLGAYTFQQALPSCPCCSQAGHSQPGAVRRPPRGRGGWEVRHRPGWGRG 120
LDTLSCLLHSALLGAYTFQQALPSCPCCSQAGHSQPGAVRRPPRGRGGWEVRHRPGWGRG
Sbjct: 61 LDTLSCLLHSALLGAYTFQQALPSCPCCSQAGHSQPGAVRRPPRGRGGWEVRHRPGWGRG 120
Query: 121 LHRRGLGRAEQPERGRAGGPGAGPRTPPMTLPSPPTLPAQDGKKEARGPEPPLETPLAAE 180
LHRRGLGRAEQPERGRAGGPGAGPRTPPMTLPSPPTLPAQDGKKEARGPEPPLETPLAAE
Sbjct: 121 LHRRGLGRAEQPERGRAGGPGAGPRTPPMTLPSPPTLPAQDGKKEARGPEPPLETPLAAE 180
Query: 181 DWETEY 186
DWETEY
Sbjct: 181 DWETEY 186
>gi|113428768 PREDICTED: hypothetical protein [Homo sapiens]
Length = 186
Score = 400 bits (1027), Expect = e-112
Identities = 185/186 (99%), Positives = 186/186 (100%)
Query: 1 MEQPKDGAGPEGNNLSLPSSGTEPWPPAPLPAPPPLLLNSTDPTHLGLPESVASVTVPIR 60
MEQPKDGAGPEGNNLSLPSSGTEPWPPAPLPAPPPLLL+STDPTHLGLPESVASVTVPIR
Sbjct: 1 MEQPKDGAGPEGNNLSLPSSGTEPWPPAPLPAPPPLLLSSTDPTHLGLPESVASVTVPIR 60
Query: 61 LDTLSCLLHSALLGAYTFQQALPSCPCCSQAGHSQPGAVRRPPRGRGGWEVRHRPGWGRG 120
LDTLSCLLHSALLGAYTFQQALPSCPCCSQAGHSQPGAVRRPPRGRGGWEVRHRPGWGRG
Sbjct: 61 LDTLSCLLHSALLGAYTFQQALPSCPCCSQAGHSQPGAVRRPPRGRGGWEVRHRPGWGRG 120
Query: 121 LHRRGLGRAEQPERGRAGGPGAGPRTPPMTLPSPPTLPAQDGKKEARGPEPPLETPLAAE 180
LHRRGLGRAEQPERGRAGGPGAGPRTPPMTLPSPPTLPAQDGKKEARGPEPPLETPLAAE
Sbjct: 121 LHRRGLGRAEQPERGRAGGPGAGPRTPPMTLPSPPTLPAQDGKKEARGPEPPLETPLAAE 180
Query: 181 DWETEY 186
DWETEY
Sbjct: 181 DWETEY 186
>gi|239755187 PREDICTED: similar to hemicentin 2 [Homo sapiens]
Length = 1215
Score = 47.4 bits (111), Expect = 7e-06
Identities = 58/186 (31%), Positives = 71/186 (38%), Gaps = 28/186 (15%)
Query: 8 AGPEGNNLSLPSSGTEPWPPAPLPAP--PPLLLNSTDPTHLGLPESVASVTVPIR----- 60
AG + L G W P LP P P L + P P SV + +R
Sbjct: 1033 AGSASHRYVLGVQGRTSWQPQSLPVPHHPACLSGLSVPLLQPTPRSVRLCHLSLRAPLPP 1092
Query: 61 -LDTLSCLLHSALLGAYTFQQALPSCPCCSQAGHSQPG-AVRRPP--RGRGGWEVRHRPG 116
T + L A L + T L P PG AV+RPP +GR W PG
Sbjct: 1093 PFATPTSCLSQACLSSSTLSLHLSPYPL------RGPGDAVQRPPTTQGRAQW----GPG 1142
Query: 117 WGR-GLH----RRGLGRAEQPERGRAGGPGAGPRTPPMTLPSPPTLPAQDGKKEARGPEP 171
+GR G+ + GL + RG AG PG G P+ P PA RGP
Sbjct: 1143 FGRTGVRGEPMKVGLRGSLPGTRGPAGSPGCGDGKRPVRCHRAP--PAGSILMPPRGPSE 1200
Query: 172 PLETPL 177
PL PL
Sbjct: 1201 PLLPPL 1206
>gi|32698936 B-cell CLL/lymphoma 9-like [Homo sapiens]
Length = 1499
Score = 43.5 bits (101), Expect = 1e-04
Identities = 58/197 (29%), Positives = 75/197 (38%), Gaps = 20/197 (10%)
Query: 2 EQPKDGAGPEGNNLSLPSSGTEPWPPAPLPAPPPLLLNSTDPT--HLGLPESVASVTVPI 59
+ PK PE LS PS+GT P PLP PPP S P G PE + P
Sbjct: 278 QAPKVPPTPEPLPLSTPSAGTPQSQPPPLPPPPPPAPGSAPPALPPEGPPEDSSQDLAPN 337
Query: 60 RLDTLSC-----LLHSALLGAYTFQQALP------SCPCCSQAGH-SQPGAVRRPPRGRG 107
+ S H A T LP S P + G + PG +R G
Sbjct: 338 SVGAASTGGGTGGTHPNTPTATTANNPLPPGGDPSSAPGPALLGEAAAPGNGQRSLVGSE 397
Query: 108 GW---EVRHRPGWGRGLH--RRGLGRAEQPERGRAGGP-GAGPRTPPMTLPSPPTLPAQD 161
G ++ HR + L R L R+ + E G P GAG PP P PP P
Sbjct: 398 GLSKEQLEHRERSLQTLRDIERLLLRSGETEPFLKGPPGGAGEGGPPAQAPPPPQQPPTA 457
Query: 162 GKKEARGPEPPLETPLA 178
+ E PL++ ++
Sbjct: 458 PPSGLKKYEEPLQSMIS 474
Score = 30.8 bits (68), Expect = 0.70
Identities = 41/169 (24%), Positives = 61/169 (36%), Gaps = 13/169 (7%)
Query: 16 SLPSSGTEPWPPAPLPAPPPLL------LNSTDPTHLGLPESVASVTVPIRLDTLSCLLH 69
++ +S E P PL PPP ++++ P+ + L + A + + L L H
Sbjct: 1109 TIATSDDELLPDRPLLPPPPPPQGSGPGISNSQPSQMHLNSAAAQSPMGMNLPGQQPLSH 1168
Query: 70 S---ALLGAYT-FQQALPSCPCCSQAGHSQPGAVRRPPRGRGGWEVRHRPGWGRGLHRRG 125
A+L + T +P P G ++ P G P
Sbjct: 1169 EPPPAMLPSPTPLGSNIPLHPNAQGTGGPPQNSMMMAPGGPDSLNAPCGPVPSSSQMMPF 1228
Query: 126 LGRAEQPERGRA--GGPGAGPRTPPMTLPSPPTLPAQDGKKEARGPEPP 172
R +QP A GG G GP PS LP +D + GP PP
Sbjct: 1229 PPRLQQPHGAMAPTGGGGGGPGLQ-QHYPSGMALPPEDLPNQPPGPMPP 1276
>gi|122056628 prion protein preproprotein [Homo sapiens]
Length = 253
Score = 41.2 bits (95), Expect = 5e-04
Identities = 23/52 (44%), Positives = 25/52 (48%), Gaps = 4/52 (7%)
Query: 92 GHSQPGAVRRPPRGRGGWEVRHRPGWGRGLHRRGLGRAEQPERGRAGGPGAG 143
G PG R PP+G GGW H GWG+ H G G QP G G P G
Sbjct: 40 GQGSPGGNRYPPQGGGGWGQPHGGGWGQP-HGGGWG---QPHGGGWGQPHGG 87
>gi|122056625 prion protein preproprotein [Homo sapiens]
Length = 253
Score = 41.2 bits (95), Expect = 5e-04
Identities = 23/52 (44%), Positives = 25/52 (48%), Gaps = 4/52 (7%)
Query: 92 GHSQPGAVRRPPRGRGGWEVRHRPGWGRGLHRRGLGRAEQPERGRAGGPGAG 143
G PG R PP+G GGW H GWG+ H G G QP G G P G
Sbjct: 40 GQGSPGGNRYPPQGGGGWGQPHGGGWGQP-HGGGWG---QPHGGGWGQPHGG 87
>gi|122056623 prion protein preproprotein [Homo sapiens]
Length = 253
Score = 41.2 bits (95), Expect = 5e-04
Identities = 23/52 (44%), Positives = 25/52 (48%), Gaps = 4/52 (7%)
Query: 92 GHSQPGAVRRPPRGRGGWEVRHRPGWGRGLHRRGLGRAEQPERGRAGGPGAG 143
G PG R PP+G GGW H GWG+ H G G QP G G P G
Sbjct: 40 GQGSPGGNRYPPQGGGGWGQPHGGGWGQP-HGGGWG---QPHGGGWGQPHGG 87
>gi|34335270 prion protein preproprotein [Homo sapiens]
Length = 253
Score = 41.2 bits (95), Expect = 5e-04
Identities = 23/52 (44%), Positives = 25/52 (48%), Gaps = 4/52 (7%)
Query: 92 GHSQPGAVRRPPRGRGGWEVRHRPGWGRGLHRRGLGRAEQPERGRAGGPGAG 143
G PG R PP+G GGW H GWG+ H G G QP G G P G
Sbjct: 40 GQGSPGGNRYPPQGGGGWGQPHGGGWGQP-HGGGWG---QPHGGGWGQPHGG 87
>gi|4506113 prion protein preproprotein [Homo sapiens]
Length = 253
Score = 41.2 bits (95), Expect = 5e-04
Identities = 23/52 (44%), Positives = 25/52 (48%), Gaps = 4/52 (7%)
Query: 92 GHSQPGAVRRPPRGRGGWEVRHRPGWGRGLHRRGLGRAEQPERGRAGGPGAG 143
G PG R PP+G GGW H GWG+ H G G QP G G P G
Sbjct: 40 GQGSPGGNRYPPQGGGGWGQPHGGGWGQP-HGGGWG---QPHGGGWGQPHGG 87
>gi|163965366 nascent polypeptide-associated complex alpha subunit
isoform a [Homo sapiens]
Length = 2078
Score = 40.0 bits (92), Expect = 0.001
Identities = 55/188 (29%), Positives = 63/188 (33%), Gaps = 21/188 (11%)
Query: 4 PKDG-AGPEGNNLSLPSSGTEPWPPAPLPAPP----PLLLNSTDPTHLG---LPESVASV 55
PK G A P +P + T P P L PP P +T P+ G P +
Sbjct: 1090 PKGGPATPSPKGAPMPPAATPPSPKGGLATPPHKGAPTTPAATPPSPKGGLATPPPKGAP 1149
Query: 56 TVPIRL--DTLSCLLHSALLGAYTFQQALPSCPCCSQAGHSQPGA----VRRPPRGRGGW 109
T P L GA T A P P A S GA PP +GG
Sbjct: 1150 TTPAATPPSPKGGLATPPPKGAPTTPAATPPSPKGGLATPSPKGAPTTPAATPPSPKGGL 1209
Query: 110 EVRHRPGWGRGLHRRGLGRAEQPERGRAG-GPGAGPRTPPMTLPSPPTLPAQDGKKEARG 168
+G P+ G A P P TP T PSP PA K A
Sbjct: 1210 ATPSP----KGAPTTPAATPPSPKGGLATPSPKGAPTTPAATPPSPKGGPATPPPKGA-- 1263
Query: 169 PEPPLETP 176
P PP TP
Sbjct: 1264 PTPPAATP 1271
Score = 37.0 bits (84), Expect = 0.010
Identities = 50/190 (26%), Positives = 67/190 (35%), Gaps = 27/190 (14%)
Query: 4 PKDGAGPEGNNLSLPSSGTEPWPPAPLPAPPPLLLNSTDP---------------THLGL 48
P++ +G+ S P++ P PP+P AP P + P +L
Sbjct: 837 PENSLSFQGSKDS-PATTHSPTPPSPKGAPTPSAVTPLSPKGVTLPPKETPTPSVVNLPF 895
Query: 49 PESVASVTVPIRLDTLSCLLHSALLGAYT-FQQALPSCPCCSQAGHSQPGAVRRPPRGRG 107
P+ + P + LS S T + +P+ P S G P A PP +G
Sbjct: 896 PKEGPATPAPKQAPALSMTSSSPKKARATPAPKGIPASP--SPKGAPTPPAA-TPPSPKG 952
Query: 108 GWEVRHRPGWGRGLHRRGLGRAEQPERGRA-GGPGAGPRTPPMTLPSPPTLPAQDGKKEA 166
G P W P+ G A P P P T PSP PA K A
Sbjct: 953 G-PATPSPKWA---PTPPAATPPSPKGGPATPSPKGAPTPPAATPPSPKGGPATPSPKGA 1008
Query: 167 RGPEPPLETP 176
P PP TP
Sbjct: 1009 --PTPPAVTP 1016
Score = 33.5 bits (75), Expect = 0.11
Identities = 50/181 (27%), Positives = 59/181 (32%), Gaps = 37/181 (20%)
Query: 8 AGPEGNNLSLPSSGTEPWP------PAPLPAPPPLLLNSTDPTHLGLPESVASVTVPIRL 61
A P P + T P P P+P AP P +T P+ G P + +
Sbjct: 932 ASPSPKGAPTPPAATPPSPKGGPATPSPKWAPTPPA--ATPPSPKGGPATPSPK------ 983
Query: 62 DTLSCLLHSALLGAYTFQQALPSCPCCSQAGHSQPGAVR----RPPRGRGGWEVRHRPGW 117
GA T A P P A S GA PP +G P
Sbjct: 984 ------------GAPTPPAATPPSPKGGPATPSPKGAPTPPAVTPPSPKGSPAATPFP-- 1029
Query: 118 GRGLHRRGLGRAEQPERGRAGGP--GAGPRTPPMTLPSPPTLPAQDGKKEARGPEPPLET 175
+G P+ A P P TP TLPSP PA K A P PP T
Sbjct: 1030 -KGASTPPAATPPSPKGSPAATPLPKGAPTTPAATLPSPKGGPATPSLKGA--PTPPAAT 1086
Query: 176 P 176
P
Sbjct: 1087 P 1087
Score = 30.4 bits (67), Expect = 0.92
Identities = 58/203 (28%), Positives = 70/203 (34%), Gaps = 44/203 (21%)
Query: 10 PEGNNLSLPSSGTEPWPPAPLPAPPPLLLNSTDPTHLGLPESVASVTVPIRLDTLSCLLH 69
P+G L+ PS P PA P P L + P G P + A+ T P L+
Sbjct: 1182 PKGG-LATPSPKGAPTTPAATPPSPKGGLATPSPK--GAPTTPAA-TPPSPKGGLAT--- 1234
Query: 70 SALLGAYTFQQALPSCPCCSQAGHSQPGA----VRRPPRGRGGWEVRHRPGWGRGL---- 121
+ GA T A P P A GA PP +GG G
Sbjct: 1235 PSPKGAPTTPAATPPSPKGGPATPPPKGAPTPPAATPPSLKGGLATPPHKGAPNPAVVTP 1294
Query: 122 -HRRGLGRAEQPERGRAGGPGA-------GPRTPP---------MTLPSP---PTLPAQD 161
+G G A P +G P A P TPP +T PSP PTLPA
Sbjct: 1295 PSPKG-GPATSPPKGAPTPPAATPPSPKGSPGTPPPKGAPTPPAVTPPSPKGTPTLPATT 1353
Query: 162 GKKEA--------RGPEPPLETP 176
+ GP PP TP
Sbjct: 1354 PSSKGGPTTPSSKEGPTPPAATP 1376
>gi|239757686 PREDICTED: hypothetical protein [Homo sapiens]
Length = 140
Score = 38.9 bits (89), Expect = 0.003
Identities = 42/137 (30%), Positives = 52/137 (37%), Gaps = 36/137 (26%)
Query: 38 LNSTDPTHLGLPESVASVTVPI--RLDTLSCLLHSALLGAYTFQQALPSCPCCSQAGHSQ 95
L+S+ P +L TVP+ LD LH AL G L P C +
Sbjct: 19 LSSSWPRYLQHHPGAGQATVPVVELLDDGHRQLHKALTG-------LERRPRCLRLRPHD 71
Query: 96 PGAVRRP-PRGRGGWEVRHRPGWGRGLHRRGLGRAEQPERGRAGGPGAGPRTPPMTLPSP 154
PG RP PR R G+ R GWG GRA G +PSP
Sbjct: 72 PGGAGRPWPRPRAGYSFRF--GWG----------------GRAVGA--------CRVPSP 105
Query: 155 PTLPAQDGKKEARGPEP 171
P P + G++EA P
Sbjct: 106 PPPPLRRGEREAAAGPP 122
>gi|239752176 PREDICTED: hypothetical protein [Homo sapiens]
Length = 140
Score = 38.9 bits (89), Expect = 0.003
Identities = 42/137 (30%), Positives = 52/137 (37%), Gaps = 36/137 (26%)
Query: 38 LNSTDPTHLGLPESVASVTVPI--RLDTLSCLLHSALLGAYTFQQALPSCPCCSQAGHSQ 95
L+S+ P +L TVP+ LD LH AL G L P C +
Sbjct: 19 LSSSWPRYLQHHPGAGQATVPVVELLDDGHRQLHKALTG-------LERRPRCLRLRPHD 71
Query: 96 PGAVRRP-PRGRGGWEVRHRPGWGRGLHRRGLGRAEQPERGRAGGPGAGPRTPPMTLPSP 154
PG RP PR R G+ R GWG GRA G +PSP
Sbjct: 72 PGGAGRPWPRPRAGYSFRF--GWG----------------GRAVGA--------CRVPSP 105
Query: 155 PTLPAQDGKKEARGPEP 171
P P + G++EA P
Sbjct: 106 PPPPLRRGEREAAAGPP 122
>gi|85815829 SH3-domain binding protein 1 [Homo sapiens]
Length = 701
Score = 38.5 bits (88), Expect = 0.003
Identities = 45/173 (26%), Positives = 65/173 (37%), Gaps = 22/173 (12%)
Query: 8 AGPEGNNLSLPSSGTEPWP-PAPLPAPPPLLLNST--DPTHLGLPESVASVTVPIRLDTL 64
A E + ++P+ T P P PAP PAP P L ++ + T +P AS V
Sbjct: 495 ASEELPSTAVPTPATTPAPAPAPAPAPAPALASAATKERTESEVPPRPASPKVTRSPPET 554
Query: 65 SCLLHSALLGAYTFQQALPSCPCCSQAG-HSQPGAVRRPPRGRGGWEVRHRPGWGRGLHR 123
+ + A P+ P +G S P A PP G G PG + L R
Sbjct: 555 AAPVEDMARRTKRPAPARPTMPPPQVSGSRSSPPAPPLPP-GSGS------PGTPQALPR 607
Query: 124 RGLGRAEQPERGRAGGPGAGPRTPPMTLPSPPTLPAQDGKKEARGPEPPLETP 176
R +G + + P PP P+PP + ++ P P P
Sbjct: 608 RLVGSSLR-----------APTVPPPLPPTPPQPARRQSRRSPASPSPASPGP 649
>gi|239756943 PREDICTED: hypothetical protein [Homo sapiens]
Length = 783
Score = 38.1 bits (87), Expect = 0.004
Identities = 28/78 (35%), Positives = 37/78 (47%), Gaps = 3/78 (3%)
Query: 103 PRGRGGW-EVRHRPGWGRGLHRRGLGRAEQPERGRAGGPGAGPRTPPMTLPSPPTLPAQD 161
P R W +++ + G GRG RG GR +P G GG AG T + LP P
Sbjct: 500 PLQRSVWGQLQPQAGGGRGWEGRGAGRWARPGPGWDGGARAG--TQGLPLPGTEAEPGAL 557
Query: 162 GKKEARGPEPPLETPLAA 179
G +RGP P + L+A
Sbjct: 558 GCSLSRGPVPRQGSLLSA 575
>gi|239751443 PREDICTED: hypothetical protein [Homo sapiens]
Length = 783
Score = 38.1 bits (87), Expect = 0.004
Identities = 28/78 (35%), Positives = 37/78 (47%), Gaps = 3/78 (3%)
Query: 103 PRGRGGW-EVRHRPGWGRGLHRRGLGRAEQPERGRAGGPGAGPRTPPMTLPSPPTLPAQD 161
P R W +++ + G GRG RG GR +P G GG AG T + LP P
Sbjct: 500 PLQRSVWGQLQPQAGGGRGWEGRGAGRWARPGPGWDGGARAG--TQGLPLPGTEAEPGAL 557
Query: 162 GKKEARGPEPPLETPLAA 179
G +RGP P + L+A
Sbjct: 558 GCSLSRGPVPRQGSLLSA 575
>gi|239745948 PREDICTED: hypothetical protein XP_002343622 [Homo
sapiens]
Length = 791
Score = 38.1 bits (87), Expect = 0.004
Identities = 28/78 (35%), Positives = 37/78 (47%), Gaps = 3/78 (3%)
Query: 103 PRGRGGW-EVRHRPGWGRGLHRRGLGRAEQPERGRAGGPGAGPRTPPMTLPSPPTLPAQD 161
P R W +++ + G GRG RG GR +P G GG AG T + LP P
Sbjct: 508 PLQRSVWGQLQPQAGGGRGWEGRGAGRWARPGPGWDGGARAG--TQGLPLPGTEAEPGAL 565
Query: 162 GKKEARGPEPPLETPLAA 179
G +RGP P + L+A
Sbjct: 566 GCSLSRGPVPRQGSLLSA 583
>gi|7706469 Kruppel-like factor [Homo sapiens]
Length = 355
Score = 38.1 bits (87), Expect = 0.004
Identities = 44/163 (26%), Positives = 53/163 (32%), Gaps = 21/163 (12%)
Query: 14 NLSLPSSGTEPWPPAPLPAPPPLLLNSTDPTHLGLPESVASVTVPIRLDTLSCLLHSALL 73
++ L G E P P P PPP + + L L AL
Sbjct: 50 SMGLDGLGAEAAPEPPPPPPPPAFYYPEPGAPPPYSAPAGGLVSELLRPELDAPLGPALH 109
Query: 74 GAYTFQQALPSCPCCSQAGHSQPGAVRR--PPRGRGGWEVRHRPGWGRGLHRRGLGR--A 129
G + + PG + + PP GG PG RG RGL R A
Sbjct: 110 GRFLL---------------APPGRLVKAEPPEADGGGGYGCAPGLTRG--PRGLKREGA 152
Query: 130 EQPERGRAGGPGAGPRTPPMTLPSPPTLPAQDGKKEARGPEPP 172
P GPG P PP T P P PA+ R PP
Sbjct: 153 PGPAASCMRGPGGRPPPPPDTPPLSPDGPARLPAPGPRASFPP 195
>gi|54607124 RNA binding motif protein 15B [Homo sapiens]
Length = 890
Score = 38.1 bits (87), Expect = 0.004
Identities = 28/77 (36%), Positives = 31/77 (40%), Gaps = 12/77 (15%)
Query: 91 AGHSQPGAVRRPPRGRGGWEVRHRPGWGRG--LHRRGLGRAEQPERG-------RAGGPG 141
A H P R PRG G HR G G G HR GR+ G +G PG
Sbjct: 45 AKHPVPARARDKPRGSGSGGGGHRDGRGTGDANHRASSGRSSGSGAGGGGRGGKASGDPG 104
Query: 142 A---GPRTPPMTLPSPP 155
A PR P+ P PP
Sbjct: 105 ASGMSPRASPLPPPPPP 121
>gi|38194229 kelch-like 17 [Homo sapiens]
Length = 642
Score = 38.1 bits (87), Expect = 0.004
Identities = 19/51 (37%), Positives = 23/51 (45%), Gaps = 3/51 (5%)
Query: 124 RGLGRAEQPERGRAGGPGAGPRTPPMTLPSPPTLPAQDGKKEARGPEPPLE 174
R GR + PE G PG GP PP P PP A+ + P P+E
Sbjct: 7 RPAGRTQSPEHG---SPGPGPEAPPPPPPQPPAPEAERTRPRQARPAAPME 54
>gi|228008400 synaptotagmin binding, cytoplasmic RNA interacting
protein isoform 6 [Homo sapiens]
Length = 562
Score = 37.7 bits (86), Expect = 0.006
Identities = 19/43 (44%), Positives = 23/43 (53%)
Query: 102 PPRGRGGWEVRHRPGWGRGLHRRGLGRAEQPERGRAGGPGAGP 144
PPRGR G+ R PG RG+ G +Q RG+ G AGP
Sbjct: 516 PPRGRAGYSQRGGPGSARGVRGARGGAQQQRGRGQGKGVEAGP 558
>gi|228008398 synaptotagmin binding, cytoplasmic RNA interacting
protein isoform 3 [Homo sapiens]
Length = 527
Score = 37.7 bits (86), Expect = 0.006
Identities = 19/43 (44%), Positives = 23/43 (53%)
Query: 102 PPRGRGGWEVRHRPGWGRGLHRRGLGRAEQPERGRAGGPGAGP 144
PPRGR G+ R PG RG+ G +Q RG+ G AGP
Sbjct: 481 PPRGRAGYSQRGGPGSARGVRGARGGAQQQRGRGQGKGVEAGP 523
>gi|228008396 synaptotagmin binding, cytoplasmic RNA interacting
protein isoform 2 [Homo sapiens]
Length = 464
Score = 37.7 bits (86), Expect = 0.006
Identities = 19/43 (44%), Positives = 23/43 (53%)
Query: 102 PPRGRGGWEVRHRPGWGRGLHRRGLGRAEQPERGRAGGPGAGP 144
PPRGR G+ R PG RG+ G +Q RG+ G AGP
Sbjct: 418 PPRGRAGYSQRGGPGSARGVRGARGGAQQQRGRGQGKGVEAGP 460
>gi|228008293 synaptotagmin binding, cytoplasmic RNA interacting
protein isoform 5 [Homo sapiens]
Length = 561
Score = 37.7 bits (86), Expect = 0.006
Identities = 22/44 (50%), Positives = 25/44 (56%), Gaps = 3/44 (6%)
Query: 102 PPRGRGGWEVRHRPGWGRGLHRRGLGRAEQPERGRAG-GPGAGP 144
PPRGR G+ R PG RG+ RG Q +RGR G G AGP
Sbjct: 516 PPRGRAGYSQRGGPGSARGV--RGARGGAQQQRGRGGKGVEAGP 557
>gi|115430223 galectin 3 [Homo sapiens]
Length = 250
Score = 37.7 bits (86), Expect = 0.006
Identities = 27/80 (33%), Positives = 31/80 (38%), Gaps = 4/80 (5%)
Query: 96 PGAVRRPPRGRGGWEVRHRPGWGRGLHRRGLGRAEQPERGRAGGPGAGPRTP-PMTLPSP 154
PGA P G GG+ PG G G + P G PGA P P P P P
Sbjct: 23 PGAWGNQPAGAGGYPGASYPGAYPGQAPPGAYPGQAPPGAYPGAPGAYPGAPAPGVYPGP 82
Query: 155 PTLPA---QDGKKEARGPEP 171
P+ P G+ A G P
Sbjct: 83 PSGPGAYPSSGQPSATGAYP 102
>gi|92859678 small nuclear RNA activating complex, polypeptide 4,
190kDa [Homo sapiens]
Length = 1469
Score = 37.7 bits (86), Expect = 0.006
Identities = 46/166 (27%), Positives = 57/166 (34%), Gaps = 37/166 (22%)
Query: 24 PWPPAPLPAPPPLLLN----------STDPTHLGLPESVASVTVPIRLDTLSCLLHSALL 73
P P PAP P +LN + P G + + RL T+
Sbjct: 934 PHTPHGRPAPGPTVLNVPLSGPGAPAAAKPGTSGSWQEAGTSAKDKRLSTM--------- 984
Query: 74 GAYTFQQALPSCPCCSQAGHSQPGAVRRPPRGRGGWEVRHRPGWGRGLHRRGLGRAEQPE 133
QALP P S+A + P A + P G G V GLG+++ P
Sbjct: 985 ------QALPLAPVFSEAEGTAPAASQAPALGPGQISV--------SCPESGLGQSQAPA 1030
Query: 134 RGRAGG-PGAGPRTPPMTLPSPPTLPAQD-GKKEARGPEPPLETPL 177
R G P A P P PSP LP Q GP PL
Sbjct: 1031 ASRKQGLPEAPPFLP--AAPSPTPLPVQPLSLTHIGGPHVATSVPL 1074
Score = 29.3 bits (64), Expect = 2.0
Identities = 17/58 (29%), Positives = 24/58 (41%), Gaps = 2/58 (3%)
Query: 4 PKDGAGPEGNNLSLPSSGTEPWPP--APLPAPPPLLLNSTDPTHLGLPESVASVTVPI 59
P+ G G + G PP P+P PL + TH+G P SV +P+
Sbjct: 1019 PESGLGQSQAPAASRKQGLPEAPPFLPAAPSPTPLPVQPLSLTHIGGPHVATSVPLPV 1076
>gi|146134388 YLP motif containing 1 [Homo sapiens]
Length = 2146
Score = 37.7 bits (86), Expect = 0.006
Identities = 41/168 (24%), Positives = 59/168 (35%), Gaps = 22/168 (13%)
Query: 21 GTEPWPPAPLPAPPPLLLNSTDPTHLGLPESVASVTVPIRLDTLSCL----LHSALLGAY 76
G+ +PP P+P PPP+ L P +S T P + + H A L
Sbjct: 10 GSSHYPPPPVPPPPPVALPEASP-----GPGYSSSTTPAAPSSSGFMSFREQHLAQLQQL 64
Query: 77 TFQQALPSCPCCSQAGHSQPGAVRRPP----RGRGGWE-----VRHRPGWGRGLHRRGLG 127
Q C Q H P + PP G G W+ + PG ++
Sbjct: 65 Q-QMHQKQMQCVLQPHHLPPPPLPPPPVMPGGGYGDWQPPPPPMPPPPGPALSYQKQQQY 123
Query: 128 RAEQPERGRAGGPGAGP---RTPPMTLPSPPTLPAQDGKKEARGPEPP 172
+ + R G PG P +PP + P PP + P+PP
Sbjct: 124 KHQMLHHQRDGPPGLVPMELESPPESPPVPPGSYMPPSQSYMPPPQPP 171
>gi|239757099 PREDICTED: hypothetical protein [Homo sapiens]
Length = 208
Score = 37.4 bits (85), Expect = 0.008
Identities = 28/89 (31%), Positives = 34/89 (38%), Gaps = 1/89 (1%)
Query: 92 GHSQPGAVRRP-PRGRGGWEVRHRPGWGRGLHRRGLGRAEQPERGRAGGPGAGPRTPPMT 150
G P A RP PR R R P G A P G P PPM+
Sbjct: 71 GERGPEASPRPAPRARAHAHSRRLPASPTGPPETRARLAWAPRFLPTNGRRPSPPRPPMS 130
Query: 151 LPSPPTLPAQDGKKEARGPEPPLETPLAA 179
P+PP ++ G+ E GP L P A+
Sbjct: 131 APTPPLGKSEPGEPETSGPRAYLRDPGAS 159
Score = 28.9 bits (63), Expect = 2.7
Identities = 28/103 (27%), Positives = 41/103 (39%), Gaps = 13/103 (12%)
Query: 17 LPSSGTEPWPPAPLPAPPPLLLNSTDPTHLGLPESVASVTVPIRLDTLSCLLHSALLGAY 76
LP++G P PP P + P L ++P G PE+ + +R S L L
Sbjct: 115 LPTNGRRPSPPRPPMSAPTPPLGKSEP---GEPET-SGPRAYLRDPGASAALRKVLATG- 169
Query: 77 TFQQALPSCPCCSQAGHSQPGAVRRPPRGRGGWEVRHRPGWGR 119
P+ P + + RR RGG + RP WG+
Sbjct: 170 ------PAQPTSPRLVFAWSRGARRERSSRGG--IFARPRWGK 204
>gi|239751605 PREDICTED: hypothetical protein XP_002347934 [Homo
sapiens]
Length = 208
Score = 37.4 bits (85), Expect = 0.008
Identities = 28/89 (31%), Positives = 34/89 (38%), Gaps = 1/89 (1%)
Query: 92 GHSQPGAVRRP-PRGRGGWEVRHRPGWGRGLHRRGLGRAEQPERGRAGGPGAGPRTPPMT 150
G P A RP PR R R P G A P G P PPM+
Sbjct: 71 GERGPEASPRPAPRARAHAHSRRLPASPTGPPETRARLAWAPRFLPTNGRRPSPPRPPMS 130
Query: 151 LPSPPTLPAQDGKKEARGPEPPLETPLAA 179
P+PP ++ G+ E GP L P A+
Sbjct: 131 APTPPLGKSEPGEPETSGPRAYLRDPGAS 159
Score = 28.9 bits (63), Expect = 2.7
Identities = 28/103 (27%), Positives = 41/103 (39%), Gaps = 13/103 (12%)
Query: 17 LPSSGTEPWPPAPLPAPPPLLLNSTDPTHLGLPESVASVTVPIRLDTLSCLLHSALLGAY 76
LP++G P PP P + P L ++P G PE+ + +R S L L
Sbjct: 115 LPTNGRRPSPPRPPMSAPTPPLGKSEP---GEPET-SGPRAYLRDPGASAALRQVLATG- 169
Query: 77 TFQQALPSCPCCSQAGHSQPGAVRRPPRGRGGWEVRHRPGWGR 119
P+ P + + RR RGG + RP WG+
Sbjct: 170 ------PAQPTSPRLVSAWSRGARRERSSRGG--IFARPRWGK 204
>gi|239746122 PREDICTED: hypothetical protein XP_002344202 [Homo
sapiens]
Length = 208
Score = 37.4 bits (85), Expect = 0.008
Identities = 28/89 (31%), Positives = 34/89 (38%), Gaps = 1/89 (1%)
Query: 92 GHSQPGAVRRP-PRGRGGWEVRHRPGWGRGLHRRGLGRAEQPERGRAGGPGAGPRTPPMT 150
G P A RP PR R R P G A P G P PPM+
Sbjct: 71 GERGPEASPRPAPRARAHAHSRRLPASPTGPPETRARLAWAPRFLPTNGRRPSPPRPPMS 130
Query: 151 LPSPPTLPAQDGKKEARGPEPPLETPLAA 179
P+PP ++ G+ E GP L P A+
Sbjct: 131 APTPPLGKSEPGEPETSGPRAYLRDPGAS 159
Score = 28.9 bits (63), Expect = 2.7
Identities = 28/103 (27%), Positives = 41/103 (39%), Gaps = 13/103 (12%)
Query: 17 LPSSGTEPWPPAPLPAPPPLLLNSTDPTHLGLPESVASVTVPIRLDTLSCLLHSALLGAY 76
LP++G P PP P + P L ++P G PE+ + +R S L L
Sbjct: 115 LPTNGRRPSPPRPPMSAPTPPLGKSEP---GEPET-SGPRAYLRDPGASAALRQVLATG- 169
Query: 77 TFQQALPSCPCCSQAGHSQPGAVRRPPRGRGGWEVRHRPGWGR 119
P+ P + + RR RGG + RP WG+
Sbjct: 170 ------PAQPTSPRLVSAWSRGARRERSSRGG--IFARPRWGK 204
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.313 0.137 0.448
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 11,889,991
Number of Sequences: 37866
Number of extensions: 826396
Number of successful extensions: 9962
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 256
Number of HSP's successfully gapped in prelim test: 675
Number of HSP's that attempted gapping in prelim test: 7094
Number of HSP's gapped (non-prelim): 3181
length of query: 186
length of database: 18,247,518
effective HSP length: 96
effective length of query: 90
effective length of database: 14,612,382
effective search space: 1315114380
effective search space used: 1315114380
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 59 (27.3 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.