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Search of human proteins with 21361212
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|21361212 cytotoxic T-lymphocyte-associated protein 4 isoform
a precursor [Homo sapiens]
(223 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|21361212 cytotoxic T-lymphocyte-associated protein 4 isoform ... 457 e-129
gi|83700231 cytotoxic T-lymphocyte-associated protein 4 isoform ... 313 1e-85
gi|5453611 CD28 antigen precursor [Homo sapiens] 73 2e-13
gi|24475832 natural cytotoxicity triggering receptor 3 isoform a... 43 2e-04
gi|224586865 natural cytotoxicity triggering receptor 3 isoform ... 42 5e-04
gi|224586860 natural cytotoxicity triggering receptor 3 isoform ... 42 5e-04
gi|169218204 PREDICTED: similar to pre-B lymphocyte gene 1 [Homo... 36 0.023
gi|46358426 myelin protein zero-like 1 isoform b [Homo sapiens] 35 0.039
gi|4506357 myelin protein zero-like 1 isoform a [Homo sapiens] 35 0.039
gi|126012571 heparan sulfate proteoglycan 2 [Homo sapiens] 35 0.067
gi|238550100 transmembrane channel-like 7 isoform b [Homo sapiens] 33 0.15
gi|238550098 transmembrane channel-like 7 isoform a [Homo sapiens] 33 0.15
gi|15029518 inducible T-cell co-stimulator precursor [Homo sapiens] 32 0.33
gi|32699028 V-set and immunoglobulin domain containing 1 [Homo s... 32 0.44
gi|4759066 sodium channel, voltage-gated, type II, beta [Homo sa... 32 0.57
gi|45505167 immunoglobulin superfamily, member 1 isoform 1 [Homo... 32 0.57
gi|239757668 PREDICTED: similar to Ig lambda chain [Homo sapiens] 30 1.7
gi|90193592 CD79B antigen isoform 3 precursor [Homo sapiens] 30 2.2
gi|11038674 CD79B antigen isoform 1 precursor [Homo sapiens] 30 2.2
gi|221316762 neurotrimin isoform 4 [Homo sapiens] 29 2.8
gi|221316757 neurotrimin isoform 3 [Homo sapiens] 29 2.8
gi|239757664 PREDICTED: similar to hCG2040019 [Homo sapiens] 29 2.8
gi|115298665 neurotrimin isoform 2 [Homo sapiens] 29 2.8
gi|7705413 neurotrimin isoform 1 [Homo sapiens] 29 2.8
gi|153085429 hepatitis A virus cellular receptor 1 [Homo sapiens] 29 3.7
gi|153085427 hepatitis A virus cellular receptor 1 [Homo sapiens] 29 3.7
gi|239753214 PREDICTED: similar to hCG2043206 [Homo sapiens] 29 3.7
gi|169163270 PREDICTED: similar to hCG2043206 [Homo sapiens] 29 3.7
gi|226371731 hydroxysteroid dehydrogenase like 1 isoform a [Homo... 29 3.7
gi|169167318 PREDICTED: similar to hCG2042707 [Homo sapiens] 28 6.3
>gi|21361212 cytotoxic T-lymphocyte-associated protein 4 isoform a
precursor [Homo sapiens]
Length = 223
Score = 457 bits (1175), Expect = e-129
Identities = 223/223 (100%), Positives = 223/223 (100%)
Query: 1 MACLGFQRHKAQLNLATRTWPCTLLFFLLFIPVFCKAMHVAQPAVVLASSRGIASFVCEY 60
MACLGFQRHKAQLNLATRTWPCTLLFFLLFIPVFCKAMHVAQPAVVLASSRGIASFVCEY
Sbjct: 1 MACLGFQRHKAQLNLATRTWPCTLLFFLLFIPVFCKAMHVAQPAVVLASSRGIASFVCEY 60
Query: 61 ASPGKATEVRVTVLRQADSQVTEVCAATYMMGNELTFLDDSICTGTSSGNQVNLTIQGLR 120
ASPGKATEVRVTVLRQADSQVTEVCAATYMMGNELTFLDDSICTGTSSGNQVNLTIQGLR
Sbjct: 61 ASPGKATEVRVTVLRQADSQVTEVCAATYMMGNELTFLDDSICTGTSSGNQVNLTIQGLR 120
Query: 121 AMDTGLYICKVELMYPPPYYLGIGNGTQIYVIDPEPCPDSDFLLWILAAVSSGLFFYSFL 180
AMDTGLYICKVELMYPPPYYLGIGNGTQIYVIDPEPCPDSDFLLWILAAVSSGLFFYSFL
Sbjct: 121 AMDTGLYICKVELMYPPPYYLGIGNGTQIYVIDPEPCPDSDFLLWILAAVSSGLFFYSFL 180
Query: 181 LTAVSLSKMLKKRSPLTTGVYVKMPPTEPECEKQFQPYFIPIN 223
LTAVSLSKMLKKRSPLTTGVYVKMPPTEPECEKQFQPYFIPIN
Sbjct: 181 LTAVSLSKMLKKRSPLTTGVYVKMPPTEPECEKQFQPYFIPIN 223
>gi|83700231 cytotoxic T-lymphocyte-associated protein 4 isoform b
precursor [Homo sapiens]
Length = 174
Score = 313 bits (801), Expect = 1e-85
Identities = 154/158 (97%), Positives = 154/158 (97%)
Query: 1 MACLGFQRHKAQLNLATRTWPCTLLFFLLFIPVFCKAMHVAQPAVVLASSRGIASFVCEY 60
MACLGFQRHKAQLNLATRTWPCTLLFFLLFIPVFCKAMHVAQPAVVLASSRGIASFVCEY
Sbjct: 1 MACLGFQRHKAQLNLATRTWPCTLLFFLLFIPVFCKAMHVAQPAVVLASSRGIASFVCEY 60
Query: 61 ASPGKATEVRVTVLRQADSQVTEVCAATYMMGNELTFLDDSICTGTSSGNQVNLTIQGLR 120
ASPGKATEVRVTVLRQADSQVTEVCAATYMMGNELTFLDDSICTGTSSGNQVNLTIQGLR
Sbjct: 61 ASPGKATEVRVTVLRQADSQVTEVCAATYMMGNELTFLDDSICTGTSSGNQVNLTIQGLR 120
Query: 121 AMDTGLYICKVELMYPPPYYLGIGNGTQIYVIDPEPCP 158
AMDTGLYICKVELMYPPPYYLGIGNGTQIYVI E P
Sbjct: 121 AMDTGLYICKVELMYPPPYYLGIGNGTQIYVIAKEKKP 158
>gi|5453611 CD28 antigen precursor [Homo sapiens]
Length = 220
Score = 73.2 bits (178), Expect = 2e-13
Identities = 60/192 (31%), Positives = 84/192 (43%), Gaps = 12/192 (6%)
Query: 40 VAQPAVVLASSRGIASFVCEYASPGKATEVRVTVLRQADSQVTEVCAATYMMGNELTFLD 99
V Q +++A + + C+Y+ + E R ++ + DS V EVC +L
Sbjct: 23 VKQSPMLVAYDNAV-NLSCKYSYNLFSREFRASLHKGLDSAV-EVCVVYGNYSQQLQVYS 80
Query: 100 DS--ICTGTSSGNQVNLTIQGLRAMDTGLYICKVELMYPPPYYLG-IGNGTQIYVIDPEP 156
+ C G V +Q L T +Y CK+E+MYPPPY NGT I+V
Sbjct: 81 KTGFNCDGKLGNESVTFYLQNLYVNQTDIYFCKIEVMYPPPYLDNEKSNGTIIHVKGKHL 140
Query: 157 CPDSDF-----LLWILAAVSSGLFFYSFLLT-AVSLSKMLKKRSPLTTGVYVKMPPTEP- 209
CP F W+L V L YS L+T A + + KRS L Y+ M P P
Sbjct: 141 CPSPLFPGPSKPFWVLVVVGGVLACYSLLVTVAFIIFWVRSKRSRLLHSDYMNMTPRRPG 200
Query: 210 ECEKQFQPYFIP 221
K +QPY P
Sbjct: 201 PTRKHYQPYAPP 212
>gi|24475832 natural cytotoxicity triggering receptor 3 isoform a
[Homo sapiens]
Length = 201
Score = 42.7 bits (99), Expect = 2e-04
Identities = 53/194 (27%), Positives = 77/194 (39%), Gaps = 17/194 (8%)
Query: 24 LLFFLLFIPVFCKAMHVAQPAVVLASSRGIASFVCEY-ASPGKATEVRVTVLRQADSQVT 82
LL ++ P C A+ V+QP + A C + AS G+ VT R
Sbjct: 6 LLILIMVHPGSC-ALWVSQPPEIRTLEGSSAFLPCSFNASQGRLAIGSVTWFRDEVVPGK 64
Query: 83 EVCAATYMMGNELTFLDDSICTGTSSGNQVNLTIQGLRAMDTGLYICKVELMYPPPYYLG 142
EV T L L S +Q L I+ +R D +Y+C+VE++ +G
Sbjct: 65 EVRNGTPEFRGRLAPLASSRFL---HDHQAELHIRDVRGHDASIYVCRVEVL---GLGVG 118
Query: 143 IGNGTQIYVIDPEPCPDSDFLLWILAAVSSGLFFYSFLLTAVSLS-----KMLKKRSPLT 197
GNGT++ V P + +L + A G + SFL AV + K L + P
Sbjct: 119 TGNGTRLVVEKEHPQLGAGTVLLLRA----GFYAVSFLSVAVGSTVYYQGKCLTWKGPRR 174
Query: 198 TGVYVKMPPTEPEC 211
V P P C
Sbjct: 175 QLPAVVPAPLPPPC 188
>gi|224586865 natural cytotoxicity triggering receptor 3 isoform c
[Homo sapiens]
Length = 190
Score = 41.6 bits (96), Expect = 5e-04
Identities = 46/162 (28%), Positives = 68/162 (41%), Gaps = 12/162 (7%)
Query: 24 LLFFLLFIPVFCKAMHVAQPAVVLASSRGIASFVCEY-ASPGKATEVRVTVLRQADSQVT 82
LL ++ P C A+ V+QP + A C + AS G+ VT R
Sbjct: 6 LLILIMVHPGSC-ALWVSQPPEIRTLEGSSAFLPCSFNASQGRLAIGSVTWFRDEVVPGK 64
Query: 83 EVCAATYMMGNELTFLDDSICTGTSSGNQVNLTIQGLRAMDTGLYICKVELMYPPPYYLG 142
EV T L L S +Q L I+ +R D +Y+C+VE++ +G
Sbjct: 65 EVRNGTPEFRGRLAPLASSRFL---HDHQAELHIRDVRGHDASIYVCRVEVL---GLGVG 118
Query: 143 IGNGTQIYVIDPEPCPDSDFLLWILAAVSSGLFFYSFLLTAV 184
GNGT++ V P + +L + A G + SFL AV
Sbjct: 119 TGNGTRLVVEKEHPQLGAGTVLLLRA----GFYAVSFLSVAV 156
>gi|224586860 natural cytotoxicity triggering receptor 3 isoform b
[Homo sapiens]
Length = 177
Score = 41.6 bits (96), Expect = 5e-04
Identities = 46/162 (28%), Positives = 68/162 (41%), Gaps = 12/162 (7%)
Query: 24 LLFFLLFIPVFCKAMHVAQPAVVLASSRGIASFVCEY-ASPGKATEVRVTVLRQADSQVT 82
LL ++ P C A+ V+QP + A C + AS G+ VT R
Sbjct: 6 LLILIMVHPGSC-ALWVSQPPEIRTLEGSSAFLPCSFNASQGRLAIGSVTWFRDEVVPGK 64
Query: 83 EVCAATYMMGNELTFLDDSICTGTSSGNQVNLTIQGLRAMDTGLYICKVELMYPPPYYLG 142
EV T L L S +Q L I+ +R D +Y+C+VE++ +G
Sbjct: 65 EVRNGTPEFRGRLAPLASSRFL---HDHQAELHIRDVRGHDASIYVCRVEVL---GLGVG 118
Query: 143 IGNGTQIYVIDPEPCPDSDFLLWILAAVSSGLFFYSFLLTAV 184
GNGT++ V P + +L + A G + SFL AV
Sbjct: 119 TGNGTRLVVEKEHPQLGAGTVLLLRA----GFYAVSFLSVAV 156
>gi|169218204 PREDICTED: similar to pre-B lymphocyte gene 1 [Homo
sapiens]
Length = 123
Score = 36.2 bits (82), Expect = 0.023
Identities = 29/107 (27%), Positives = 45/107 (42%), Gaps = 19/107 (17%)
Query: 32 PVFCKAMHVAQPAVVLASSRGIASFVCEYAS-PGKATEVRVTVLRQADSQVTEVCAATYM 90
P F A + + +S+GI+S++ Y PGKA ++ + A+T
Sbjct: 30 PSFLSASVGDRVTITCRASQGISSYLAWYQQKPGKAPKLLI------------YAASTLQ 77
Query: 91 MGNELTFLDDSICTGTSSGNQVNLTIQGLRAMDTGLYICKVELMYPP 137
G F +G+ SG + LTI L+ D Y C+ YPP
Sbjct: 78 SGVPSRF------SGSGSGTEFTLTISSLQPEDFATYYCQQLNSYPP 118
>gi|46358426 myelin protein zero-like 1 isoform b [Homo sapiens]
Length = 209
Score = 35.4 bits (80), Expect = 0.039
Identities = 38/185 (20%), Positives = 80/185 (43%), Gaps = 12/185 (6%)
Query: 17 TRTWPCTLLFFLL-FIPVFCKAMHVAQPAVVLASSRGIASFVCEYASP---GKATEVRVT 72
+R W ++L L + A+ V P + ++ C++ S G T V +
Sbjct: 16 SRRWLWSVLAAALGLLTAGVSALEVYTPKEIFVANGTQGKLTCKFKSTSTTGGLTSVSWS 75
Query: 73 VLRQ-ADSQVT--EVCAATYMMGNELTFLDDSICTGTSSGNQVNLTIQGLRAMDTGLYIC 129
+ AD+ V+ +GN F D G ++ I+ ++ + G YIC
Sbjct: 76 FQPEGADTTVSFFHYSQGQVYLGNYPPFKDRISWAGDLDKKDASINIENMQFIHNGTYIC 135
Query: 130 KVELMYPPPYYLGIGNGTQIYVIDPEPCPDSDFLLWILAAVSSGLFFYSFLLTAVSLSKM 189
V+ PP + G+ ++YV++ E P F +W++ + + + LL ++ L+ +
Sbjct: 136 DVK--NPPDIVVQPGH-IRLYVVEKENLP--VFPVWVVVGIVTAVVLGLTLLISMILAVL 190
Query: 190 LKKRS 194
++++
Sbjct: 191 YRRKN 195
>gi|4506357 myelin protein zero-like 1 isoform a [Homo sapiens]
Length = 269
Score = 35.4 bits (80), Expect = 0.039
Identities = 38/185 (20%), Positives = 80/185 (43%), Gaps = 12/185 (6%)
Query: 17 TRTWPCTLLFFLL-FIPVFCKAMHVAQPAVVLASSRGIASFVCEYASP---GKATEVRVT 72
+R W ++L L + A+ V P + ++ C++ S G T V +
Sbjct: 16 SRRWLWSVLAAALGLLTAGVSALEVYTPKEIFVANGTQGKLTCKFKSTSTTGGLTSVSWS 75
Query: 73 VLRQ-ADSQVT--EVCAATYMMGNELTFLDDSICTGTSSGNQVNLTIQGLRAMDTGLYIC 129
+ AD+ V+ +GN F D G ++ I+ ++ + G YIC
Sbjct: 76 FQPEGADTTVSFFHYSQGQVYLGNYPPFKDRISWAGDLDKKDASINIENMQFIHNGTYIC 135
Query: 130 KVELMYPPPYYLGIGNGTQIYVIDPEPCPDSDFLLWILAAVSSGLFFYSFLLTAVSLSKM 189
V+ PP + G+ ++YV++ E P F +W++ + + + LL ++ L+ +
Sbjct: 136 DVK--NPPDIVVQPGH-IRLYVVEKENLP--VFPVWVVVGIVTAVVLGLTLLISMILAVL 190
Query: 190 LKKRS 194
++++
Sbjct: 191 YRRKN 195
>gi|126012571 heparan sulfate proteoglycan 2 [Homo sapiens]
Length = 4391
Score = 34.7 bits (78), Expect = 0.067
Identities = 22/61 (36%), Positives = 27/61 (44%), Gaps = 2/61 (3%)
Query: 104 TGTSSGNQVNLTIQGLRAMDTGLYICKVELMYPPPYYLGIGNGTQIYVIDPEPCPDSDFL 163
T TS G + L I+ ++ D G Y C E M GI +G V PCPD F
Sbjct: 454 TVTSEGGRGTLIIRDVKESDQGAYTC--EAMNARGMVFGIPDGVLELVPQRGPCPDGHFY 511
Query: 164 L 164
L
Sbjct: 512 L 512
>gi|238550100 transmembrane channel-like 7 isoform b [Homo sapiens]
Length = 613
Score = 33.5 bits (75), Expect = 0.15
Identities = 15/65 (23%), Positives = 31/65 (47%), Gaps = 4/65 (6%)
Query: 43 PAVVLASSRGIASFV----CEYASPGKATEVRVTVLRQADSQVTEVCAATYMMGNELTFL 98
P++V+ + I + Y E+R+T+LR ++ +C + +G+++T
Sbjct: 300 PSIVITLANFITPMIFAKIIRYEDYSPGFEIRLTILRCVFMRLATICVLVFTLGSKITSC 359
Query: 99 DDSIC 103
DD C
Sbjct: 360 DDDTC 364
>gi|238550098 transmembrane channel-like 7 isoform a [Homo sapiens]
Length = 723
Score = 33.5 bits (75), Expect = 0.15
Identities = 15/65 (23%), Positives = 31/65 (47%), Gaps = 4/65 (6%)
Query: 43 PAVVLASSRGIASFV----CEYASPGKATEVRVTVLRQADSQVTEVCAATYMMGNELTFL 98
P++V+ + I + Y E+R+T+LR ++ +C + +G+++T
Sbjct: 410 PSIVITLANFITPMIFAKIIRYEDYSPGFEIRLTILRCVFMRLATICVLVFTLGSKITSC 469
Query: 99 DDSIC 103
DD C
Sbjct: 470 DDDTC 474
>gi|15029518 inducible T-cell co-stimulator precursor [Homo sapiens]
Length = 199
Score = 32.3 bits (72), Expect = 0.33
Identities = 27/142 (19%), Positives = 55/142 (38%), Gaps = 9/142 (6%)
Query: 52 GIASFVCEYASPGKATEVRVTVLRQADSQVTEVCAATYMMGNELTFLDDSICTGTSSGNQ 111
G +C+Y P + ++ +L+ Q+ T GN ++ C S N
Sbjct: 36 GGVQILCKY--PDIVQQFKMQLLK--GGQILCDLTKTKGSGNTVSIKSLKFCHSQLSNNS 91
Query: 112 VNLTIQGLRAMDTGLYICKVELMYPPPYYLGIGNGTQIYVIDPEPCPDSDFLLWILAAVS 171
V+ + L Y C + + PPP+ + + G +++ + + C F L +
Sbjct: 92 VSFFLYNLDHSHANYYFCNLSIFDPPPFKVTL-TGGYLHIYESQLCCQLKFWL----PIG 146
Query: 172 SGLFFYSFLLTAVSLSKMLKKR 193
F +L + + + KK+
Sbjct: 147 CAAFVVVCILGCILICWLTKKK 168
>gi|32699028 V-set and immunoglobulin domain containing 1 [Homo
sapiens]
Length = 387
Score = 32.0 bits (71), Expect = 0.44
Identities = 15/43 (34%), Positives = 24/43 (55%), Gaps = 3/43 (6%)
Query: 104 TGTSSGNQVNLTIQGLRAMDTGLYICKVELMYPPPYYLGIGNG 146
TG++ ++TI ++ D+G+YIC V PP +LG G
Sbjct: 91 TGSNDPGNASITISHMQPADSGIYICDVN---NPPDFLGQNQG 130
>gi|4759066 sodium channel, voltage-gated, type II, beta [Homo
sapiens]
Length = 215
Score = 31.6 bits (70), Expect = 0.57
Identities = 24/97 (24%), Positives = 46/97 (47%), Gaps = 4/97 (4%)
Query: 97 FLDDSICTGTSSGNQVNLTIQGLRAMDTGLYICKVELMYPPPYYLGIGNGTQIYVIDPEP 156
F D +G S V++ ++ ++ D G+Y C + M PP + G G + V+ EP
Sbjct: 95 FQDRVEFSGNPSKYDVSVMLRNVQPEDEGIYNCYI--MNPPDRHRGHGK-IHLQVLMEEP 151
Query: 157 CPDSDFLLWILAAVSSGLFFYSFLLTAVSLSKMLKKR 193
P+ D + ++ S G F +L + + + +K+
Sbjct: 152 -PERDSTVAVIVGASVGGFLAVVILVLMVVKCVRRKK 187
>gi|45505167 immunoglobulin superfamily, member 1 isoform 1 [Homo
sapiens]
Length = 1336
Score = 31.6 bits (70), Expect = 0.57
Identities = 25/100 (25%), Positives = 39/100 (39%), Gaps = 7/100 (7%)
Query: 61 ASPGKATEVRVTVLRQADSQVTEVCAATYMMGNE--LTFLDDSICTGTSSGNQVNLTIQG 118
A P ++ V + V V A Y G + L FLD TS + + +
Sbjct: 327 ARPSAVVQMGQNVSLRCRGPVDGVGLALYKKGEDKPLQFLD-----ATSIDDNTSFFLNN 381
Query: 119 LRAMDTGLYICKVELMYPPPYYLGIGNGTQIYVIDPEPCP 158
+ DTG+Y C L + + N ++ V+D P P
Sbjct: 382 VTYSDTGIYSCHYLLTWKTSIRMPSHNTVELMVVDKPPKP 421
>gi|239757668 PREDICTED: similar to Ig lambda chain [Homo sapiens]
Length = 288
Score = 30.0 bits (66), Expect = 1.7
Identities = 13/26 (50%), Positives = 17/26 (65%)
Query: 104 TGTSSGNQVNLTIQGLRAMDTGLYIC 129
+G+ SGN +LTI GL+A D Y C
Sbjct: 84 SGSKSGNTASLTISGLQAEDEADYYC 109
>gi|90193592 CD79B antigen isoform 3 precursor [Homo sapiens]
Length = 230
Score = 29.6 bits (65), Expect = 2.2
Identities = 13/36 (36%), Positives = 19/36 (52%)
Query: 114 LTIQGLRAMDTGLYICKVELMYPPPYYLGIGNGTQI 149
LTIQG+R D G+Y C+ + Y G G ++
Sbjct: 108 LTIQGIRFEDNGIYFCQQKCNNTSEVYQGCGTELRV 143
>gi|11038674 CD79B antigen isoform 1 precursor [Homo sapiens]
Length = 229
Score = 29.6 bits (65), Expect = 2.2
Identities = 13/36 (36%), Positives = 19/36 (52%)
Query: 114 LTIQGLRAMDTGLYICKVELMYPPPYYLGIGNGTQI 149
LTIQG+R D G+Y C+ + Y G G ++
Sbjct: 107 LTIQGIRFEDNGIYFCQQKCNNTSEVYQGCGTELRV 142
>gi|221316762 neurotrimin isoform 4 [Homo sapiens]
Length = 316
Score = 29.3 bits (64), Expect = 2.8
Identities = 19/73 (26%), Positives = 35/73 (47%), Gaps = 8/73 (10%)
Query: 64 GKATEVRVTVLRQADSQVTEVC----AATYMMGNELTFLDDSICTGTSSGNQVNLTIQGL 119
G++ +R T+ D++VT V + GN+ LD + +++ Q ++ IQ +
Sbjct: 50 GESATLRCTI----DNRVTRVAWLNRSTILYAGNDKWCLDPRVVLLSNTQTQYSIEIQNV 105
Query: 120 RAMDTGLYICKVE 132
D G Y C V+
Sbjct: 106 DVYDEGPYTCSVQ 118
>gi|221316757 neurotrimin isoform 3 [Homo sapiens]
Length = 355
Score = 29.3 bits (64), Expect = 2.8
Identities = 19/73 (26%), Positives = 35/73 (47%), Gaps = 8/73 (10%)
Query: 64 GKATEVRVTVLRQADSQVTEVC----AATYMMGNELTFLDDSICTGTSSGNQVNLTIQGL 119
G++ +R T+ D++VT V + GN+ LD + +++ Q ++ IQ +
Sbjct: 50 GESATLRCTI----DNRVTRVAWLNRSTILYAGNDKWCLDPRVVLLSNTQTQYSIEIQNV 105
Query: 120 RAMDTGLYICKVE 132
D G Y C V+
Sbjct: 106 DVYDEGPYTCSVQ 118
>gi|239757664 PREDICTED: similar to hCG2040019 [Homo sapiens]
Length = 645
Score = 29.3 bits (64), Expect = 2.8
Identities = 16/38 (42%), Positives = 19/38 (50%), Gaps = 11/38 (28%)
Query: 103 CTGTSS-----------GNQVNLTIQGLRAMDTGLYIC 129
CTGTSS GN ++TI GL+A D Y C
Sbjct: 383 CTGTSSDVGHYNYVSCSGNMASMTISGLQAEDEADYYC 420
>gi|115298665 neurotrimin isoform 2 [Homo sapiens]
Length = 344
Score = 29.3 bits (64), Expect = 2.8
Identities = 19/73 (26%), Positives = 35/73 (47%), Gaps = 8/73 (10%)
Query: 64 GKATEVRVTVLRQADSQVTEVC----AATYMMGNELTFLDDSICTGTSSGNQVNLTIQGL 119
G++ +R T+ D++VT V + GN+ LD + +++ Q ++ IQ +
Sbjct: 50 GESATLRCTI----DNRVTRVAWLNRSTILYAGNDKWCLDPRVVLLSNTQTQYSIEIQNV 105
Query: 120 RAMDTGLYICKVE 132
D G Y C V+
Sbjct: 106 DVYDEGPYTCSVQ 118
>gi|7705413 neurotrimin isoform 1 [Homo sapiens]
Length = 344
Score = 29.3 bits (64), Expect = 2.8
Identities = 19/73 (26%), Positives = 35/73 (47%), Gaps = 8/73 (10%)
Query: 64 GKATEVRVTVLRQADSQVTEVC----AATYMMGNELTFLDDSICTGTSSGNQVNLTIQGL 119
G++ +R T+ D++VT V + GN+ LD + +++ Q ++ IQ +
Sbjct: 50 GESATLRCTI----DNRVTRVAWLNRSTILYAGNDKWCLDPRVVLLSNTQTQYSIEIQNV 105
Query: 120 RAMDTGLYICKVE 132
D G Y C V+
Sbjct: 106 DVYDEGPYTCSVQ 118
>gi|153085429 hepatitis A virus cellular receptor 1 [Homo sapiens]
Length = 364
Score = 28.9 bits (63), Expect = 3.7
Identities = 15/43 (34%), Positives = 23/43 (53%), Gaps = 2/43 (4%)
Query: 92 GNELTFLDDSI--CTGTSSGNQVNLTIQGLRAMDTGLYICKVE 132
G +T+ D+ G S V+LTI+ D+G+Y C+VE
Sbjct: 66 GTHVTYRKDTRYKLLGDLSRRDVSLTIENTAVSDSGVYCCRVE 108
>gi|153085427 hepatitis A virus cellular receptor 1 [Homo sapiens]
Length = 364
Score = 28.9 bits (63), Expect = 3.7
Identities = 15/43 (34%), Positives = 23/43 (53%), Gaps = 2/43 (4%)
Query: 92 GNELTFLDDSI--CTGTSSGNQVNLTIQGLRAMDTGLYICKVE 132
G +T+ D+ G S V+LTI+ D+G+Y C+VE
Sbjct: 66 GTHVTYRKDTRYKLLGDLSRRDVSLTIENTAVSDSGVYCCRVE 108
>gi|239753214 PREDICTED: similar to hCG2043206 [Homo sapiens]
Length = 157
Score = 28.9 bits (63), Expect = 3.7
Identities = 12/34 (35%), Positives = 18/34 (52%)
Query: 104 TGTSSGNQVNLTIQGLRAMDTGLYICKVELMYPP 137
+G+ SG LTI L+ D +Y C+ + PP
Sbjct: 89 SGSGSGTDFTLTISSLQPEDFAVYYCQQDYNLPP 122
>gi|169163270 PREDICTED: similar to hCG2043206 [Homo sapiens]
Length = 151
Score = 28.9 bits (63), Expect = 3.7
Identities = 12/34 (35%), Positives = 18/34 (52%)
Query: 104 TGTSSGNQVNLTIQGLRAMDTGLYICKVELMYPP 137
+G+ SG LTI L+ D +Y C+ + PP
Sbjct: 84 SGSGSGTDFTLTISSLQPEDFAVYYCQQDYNLPP 117
>gi|226371731 hydroxysteroid dehydrogenase like 1 isoform a [Homo
sapiens]
Length = 330
Score = 28.9 bits (63), Expect = 3.7
Identities = 24/98 (24%), Positives = 42/98 (42%), Gaps = 7/98 (7%)
Query: 44 AVVLASSRGIASFVCEYASPGKATEVRVTVLRQADSQVTEVCAATYMMGNELTFLDDSIC 103
AVV ++ GI E + + ++ + V + A TY + ++ D
Sbjct: 70 AVVSGATDGIGKAYAEELASRGLNIILISRNEEKLQVVAKDIADTYKVETDIIVAD---- 125
Query: 104 TGTSSGNQVNLTI-QGLRAMDTGLYICKVELMYPPPYY 140
SSG ++ L I + L+ D G+ + V + YP P Y
Sbjct: 126 --FSSGREIYLPIREALKDKDVGILVNNVGVFYPYPQY 161
>gi|169167318 PREDICTED: similar to hCG2042707 [Homo sapiens]
Length = 142
Score = 28.1 bits (61), Expect = 6.3
Identities = 23/94 (24%), Positives = 38/94 (40%), Gaps = 19/94 (20%)
Query: 45 VVLASSRGIASFVCEYAS-PGKATEVRVTVLRQADSQVTEVCAATYMMGNELTFLDDSIC 103
+ +S+GI++ + Y PGKA ++ + + +S V S
Sbjct: 52 ITCRASQGISNSLAWYQQKPGKAPKLLLYAASRLESGVP------------------SRF 93
Query: 104 TGTSSGNQVNLTIQGLRAMDTGLYICKVELMYPP 137
+G+ SG LTI L+ D Y C+ PP
Sbjct: 94 SGSGSGTDYTLTISSLQPEDFATYYCQQYYSTPP 127
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.325 0.138 0.430
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9,071,576
Number of Sequences: 37866
Number of extensions: 377532
Number of successful extensions: 1308
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 15
Number of HSP's successfully gapped in prelim test: 23
Number of HSP's that attempted gapping in prelim test: 1284
Number of HSP's gapped (non-prelim): 46
length of query: 223
length of database: 18,247,518
effective HSP length: 98
effective length of query: 125
effective length of database: 14,536,650
effective search space: 1817081250
effective search space used: 1817081250
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 60 (27.7 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.