Guide to the Human Genome
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Name: LOC120376 Sequence: fasta or formatted (154aa) NCBI GI: 209870059
Description:

hypothetical protein LOC120376

Not currently referenced in the text

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             9.7         15           3
 C cysteine            5.8          9           1
 D aspartate           6.5         10           1
 E glutamate           4.5          7           1
 F phenylalanine       5.2          8           1
 G glycine             1.9          3           1
 H histidine           3.9          6           2
 I isoleucine          2.6          4           1
 K lysine              0.6          1           1
 L leucine             6.5         10           2
 M methionine          0.6          1           1
 N asparagine          3.9          6           1
 P proline             9.7         15           2
 Q glutamine           4.5          7           1
 R arginine            1.3          2           1
 S serine             17.5         27           2
 T threonine           5.8          9           2
 V valine              1.3          2           1
 W tryptophan          0.0          0           0
 Y tyrosine            7.8         12           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   hypothetical protein LOC120376 
RBMXL1                0.016   RNA binding motif protein, X-linked-like 1 
RBMXL1                0.016   RNA binding motif protein, X-linked-like 1 
RBMX                  0.016   RNA binding motif protein, X-linked 
ANGEL2                0.016   LOC90806 protein 
ASH1L                 0.016   absent, small, or homeotic 1-like 
SDK1                  0.016   sidekick 1 
UBAP2L                0.016   ubiquitin associated protein 2-like isoform a [Homo...
UBAP2L                0.016   ubiquitin associated protein 2-like isoform b [Homo...
UBAP2                 0.016   ubiquitin associated protein 2 
LOC729815             0.013   PREDICTED: hypothetical protein 
LOC100292714          0.013   PREDICTED: hypothetical protein 
LOC100290875          0.013   PREDICTED: hypothetical protein XP_002346912 
LOC729815             0.013   PREDICTED: hypothetical protein 
LOC100287196          0.013   PREDICTED: hypothetical protein XP_002342759 
LOC100287196          0.013   PREDICTED: hypothetical protein 
POLR2A                0.013   DNA-directed RNA polymerase II A 
SETD1A                0.013   SET domain containing 1A 
RTN1                  0.013   reticulon 1 isoform A 
PKP3                  0.013   plakophilin 3 
TNS1                  0.010   tensin 
MAGEC1                0.010   melanoma antigen family C, 1 
MYST3                 0.010   MYST histone acetyltransferase (monocytic leukemia)...
MYST3                 0.010   MYST histone acetyltransferase (monocytic leukemia)...
MYST3                 0.010   MYST histone acetyltransferase (monocytic leukemia)...
ACRV1                 0.010   acrosomal vesicle protein 1 isoform f precursor [Homo...
C2orf53               0.010   hypothetical protein LOC339779 
FBLIM1                0.010   filamin-binding LIM protein-1 isoform c 
FBLIM1                0.010   filamin-binding LIM protein-1 isoform a 
CD248                 0.010   tumor endothelial marker 1 precursor 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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