Guide to the Human Genome
Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help
Name: YY1AP1 Sequence: fasta or formatted (750aa) NCBI GI: 20986490
Description:

YY1-associated protein isoform 3

Referenced in:

Liver
Kruppel-related Zinc Finger Proteins

Other entries for this name:
alt prot [796aa] YY1-associated protein isoform 2
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             7.1         53           2
 C cysteine            2.0         15           2
 D aspartate           2.7         20           2
 E glutamate           8.0         60           4
 F phenylalanine       3.7         28           1
 G glycine             4.1         31           3
 H histidine           2.3         17           2
 I isoleucine          4.3         32           2
 K lysine              7.1         53           2
 L leucine            10.5         79           3
 M methionine          2.5         19           2
 N asparagine          4.4         33           2
 P proline            10.7         80           3
 Q glutamine           6.5         49           3
 R arginine            3.7         28           3
 S serine              7.5         56           2
 T threonine           5.2         39           2
 V valine              6.1         46           2
 W tryptophan          0.7          5           1
 Y tyrosine            0.9          7           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   YY1-associated protein isoform 3 
YY1AP1                0.966   YY1-associated protein isoform 2 
GON4L                 0.925   gon-4-like isoform a 
GON4L                 0.925   gon-4-like isoform b 
SRCAP                 0.025   Snf2-related CBP activator protein 
GGN                   0.015   gametogenetin 
CASKIN1               0.014   CASK interacting protein 1 
MUC2                  0.014   mucin 2 precursor 
LOC100128719          0.014   PREDICTED: hypothetical protein, partial 
FLJ22184              0.014   PREDICTED: hypothetical protein LOC80164 
LOC100128719          0.014   PREDICTED: hypothetical protein, partial 
FLJ22184              0.013   PREDICTED: hypothetical protein FLJ22184 
BAT2D1                0.013   HBxAg transactivated protein 2 
YLPM1                 0.013   YLP motif containing 1 
SOBP                  0.013   sine oculis binding protein homolog 
POM121C               0.012   POM121 membrane glycoprotein (rat)-like 
PTPN23                0.012   protein tyrosine phosphatase, non-receptor type 23 [...
CCDC120               0.011   coiled-coil domain containing 120 isoform 3 
CCDC120               0.011   coiled-coil domain containing 120 isoform 4 
CCDC120               0.011   coiled-coil domain containing 120 isoform 2 
CCDC120               0.011   coiled-coil domain containing 120 isoform 1 
SAP130                0.011   Sin3A-associated protein, 130kDa isoform a 
MLL2                  0.011   myeloid/lymphoid or mixed-lineage leukemia 2 
BCORL1                0.011   BCL6 co-repressor-like 1 
PCLO                  0.011   piccolo isoform 2 
PCLO                  0.011   piccolo isoform 1 
RERE                  0.011   atrophin-1 like protein isoform b 
RERE                  0.011   atrophin-1 like protein isoform a 
RERE                  0.011   atrophin-1 like protein isoform a 
LOC100288540          0.011   PREDICTED: hypothetical protein XP_002342775 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help

Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

CSHL Press