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Search of human proteins with 209862821
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|209862821 hypothetical protein LOC115572 [Homo sapiens]
(425 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|209862821 hypothetical protein LOC115572 [Homo sapiens] 849 0.0
gi|117414143 hypothetical protein LOC55603 [Homo sapiens] 491 e-139
gi|38570095 hypothetical protein LOC54855 [Homo sapiens] 473 e-133
gi|22749287 hypothetical protein LOC169966 [Homo sapiens] 378 e-105
gi|24497589 aristaless related homeobox [Homo sapiens] 34 0.29
gi|66730481 neuregulin 3 [Homo sapiens] 32 1.4
gi|41350201 epsin 1 isoform c [Homo sapiens] 30 3.2
gi|194248095 epsin 1 isoform b [Homo sapiens] 30 3.2
gi|194272148 epsin 1 isoform a [Homo sapiens] 30 3.2
gi|116256340 SEC31 homolog A isoform 3 [Homo sapiens] 30 3.2
gi|162951873 ventral anterior homeobox 1 isoform a [Homo sapiens] 30 4.2
gi|110681708 zinc finger protein 579 [Homo sapiens] 30 4.2
gi|24497554 homeobox A13 [Homo sapiens] 30 5.4
gi|27436925 synoviolin 1 isoform a [Homo sapiens] 29 7.1
gi|115430252 serine threonine kinase 39 (STE20/SPS1 homolog, yea... 29 7.1
gi|38016945 deformed epidermal autoregulatory factor 1 [Homo sap... 29 7.1
gi|195539337 S-adenosylhomocysteine hydrolase-like 2 isoform b [... 29 7.1
gi|24308043 S-adenosylhomocysteine hydrolase-like 2 isoform a [H... 29 7.1
gi|169216044 PREDICTED: similar to hCG2041320 [Homo sapiens] 29 7.1
gi|169215838 PREDICTED: similar to hCG2041320 [Homo sapiens] 29 7.1
gi|239749940 PREDICTED: similar to deformed epidermal autoregula... 29 7.1
gi|169215637 PREDICTED: similar to hCG2041320 [Homo sapiens] 29 7.1
gi|224451135 splicing factor, arginine/serine-rich 15 isoform 3 ... 29 7.1
gi|224451133 splicing factor, arginine/serine-rich 15 isoform 2 ... 29 7.1
gi|40789229 splicing factor, arginine/serine-rich 15 isoform 1 [... 29 7.1
gi|4507973 zinc finger protein of the cerebellum 3 [Homo sapiens] 29 7.1
gi|5902724 neuro-oncological ventral antigen 2 [Homo sapiens] 29 7.1
gi|117553584 adaptor-related protein complex 3, delta 1 subunit ... 29 9.3
gi|117553580 adaptor-related protein complex 3, delta 1 subunit ... 29 9.3
gi|20336188 paired basic amino acid cleaving system 4 isoform e ... 29 9.3
>gi|209862821 hypothetical protein LOC115572 [Homo sapiens]
Length = 425
Score = 849 bits (2193), Expect = 0.0
Identities = 425/425 (100%), Positives = 425/425 (100%)
Query: 1 MMPSESGAERRDRAAAQVGTAAATAVATAAPAGGGPDPEALSAFPGRHLSGLSWPQVKRL 60
MMPSESGAERRDRAAAQVGTAAATAVATAAPAGGGPDPEALSAFPGRHLSGLSWPQVKRL
Sbjct: 1 MMPSESGAERRDRAAAQVGTAAATAVATAAPAGGGPDPEALSAFPGRHLSGLSWPQVKRL 60
Query: 61 DALLSEPIPIHGRGNFPTLSVQPRQIVQVVRSTLEEQGLHVHSVRLHGSAASHVLHPESG 120
DALLSEPIPIHGRGNFPTLSVQPRQIVQVVRSTLEEQGLHVHSVRLHGSAASHVLHPESG
Sbjct: 61 DALLSEPIPIHGRGNFPTLSVQPRQIVQVVRSTLEEQGLHVHSVRLHGSAASHVLHPESG 120
Query: 121 LGYKDLDLVFRVDLRSEASFQLTKAVVLACLLDFLPAGVSRAKITPLTLKEAYVQKLVKV 180
LGYKDLDLVFRVDLRSEASFQLTKAVVLACLLDFLPAGVSRAKITPLTLKEAYVQKLVKV
Sbjct: 121 LGYKDLDLVFRVDLRSEASFQLTKAVVLACLLDFLPAGVSRAKITPLTLKEAYVQKLVKV 180
Query: 181 CTDSDRWSLISLSNKSGKNVELKFVDSVRRQFEFSIDSFQIILDSLLLFGQCSSTPMSEA 240
CTDSDRWSLISLSNKSGKNVELKFVDSVRRQFEFSIDSFQIILDSLLLFGQCSSTPMSEA
Sbjct: 181 CTDSDRWSLISLSNKSGKNVELKFVDSVRRQFEFSIDSFQIILDSLLLFGQCSSTPMSEA 240
Query: 241 FHPTVTGESLYGDFTEALEHLRHRVIATRSPEEIRGGGLLKYCHLLVRGFRPRPSTDVRA 300
FHPTVTGESLYGDFTEALEHLRHRVIATRSPEEIRGGGLLKYCHLLVRGFRPRPSTDVRA
Sbjct: 241 FHPTVTGESLYGDFTEALEHLRHRVIATRSPEEIRGGGLLKYCHLLVRGFRPRPSTDVRA 300
Query: 301 LQRYMCSRFFIDFPDLVEQRRTLERYLEAHFGGADAARRYACLVTLHRVVNESTVCLMNH 360
LQRYMCSRFFIDFPDLVEQRRTLERYLEAHFGGADAARRYACLVTLHRVVNESTVCLMNH
Sbjct: 301 LQRYMCSRFFIDFPDLVEQRRTLERYLEAHFGGADAARRYACLVTLHRVVNESTVCLMNH 360
Query: 361 ERRQTLDLIAALALQALAEQGPAATAALAWRPPGTDGVVPATVNYYVTPVQPLLAHAYPT 420
ERRQTLDLIAALALQALAEQGPAATAALAWRPPGTDGVVPATVNYYVTPVQPLLAHAYPT
Sbjct: 361 ERRQTLDLIAALALQALAEQGPAATAALAWRPPGTDGVVPATVNYYVTPVQPLLAHAYPT 420
Query: 421 WLPCN 425
WLPCN
Sbjct: 421 WLPCN 425
>gi|117414143 hypothetical protein LOC55603 [Homo sapiens]
Length = 442
Score = 491 bits (1265), Expect = e-139
Identities = 252/386 (65%), Positives = 294/386 (76%), Gaps = 7/386 (1%)
Query: 45 PGRHLSGLSWPQVKRLDALLSEPIPIHGRGNFPTLSVQPRQIVQVVRSTLEEQGLHVHSV 104
P H + L+W QV+RLD +LSE IPIHGRGNFPTL +QP IV+VVR L E+ + V V
Sbjct: 59 PTAHCNVLNWEQVQRLDGILSETIPIHGRGNFPTLELQPSLIVKVVRRRLAEKRIGVRDV 118
Query: 105 RLHGSAASHVLHPESGLGYKDLDLVFRVDLRSEASFQLTKAVVLACLLDFLPAGVSRAKI 164
RL+GSAASHVLH +SGLGYKDLDL+F DLR E FQ K VVL CLLDFLP GV++ KI
Sbjct: 119 RLNGSAASHVLHQDSGLGYKDLDLIFCADLRGEGEFQTVKDVVLDCLLDFLPEGVNKEKI 178
Query: 165 TPLTLKEAYVQKLVKVCTDSDRWSLISLSNKSGKNVELKFVDSVRRQFEFSIDSFQIILD 224
TPLTLKEAYVQK+VKVC DSDRWSLISLSN SGKNVELKFVDS+RRQFEFS+DSFQI LD
Sbjct: 179 TPLTLKEAYVQKMVKVCNDSDRWSLISLSNNSGKNVELKFVDSLRRQFEFSVDSFQIKLD 238
Query: 225 SLLLFGQCSSTPMSEAFHPTVTGESLYGDFTEALEHLRHRVIATRSPEEIRGGGLLKYCH 284
SLLLF +CS PM+E FHPT+ GES+YGDF EA +HL +++IATR+PEEIRGGGLLKYC+
Sbjct: 239 SLLLFYECSENPMTETFHPTIIGESVYGDFQEAFDHLCNKIIATRNPEEIRGGGLLKYCN 298
Query: 285 LLVRGFRPRPSTDVRALQRYMCSRFFIDFPDLVEQRRTLERYLEAHFGGADAARRYACLV 344
LLVRGFRP S +++ LQRYMCSRFFIDF D+ EQ+R LE YL+ HF G + R+Y L+
Sbjct: 299 LLVRGFRP-ASDEIKTLQRYMCSRFFIDFSDIGEQQRKLESYLQNHFVGLE-DRKYEYLM 356
Query: 345 TLHRVVNESTVCLMNHERRQTLDLIAALALQALAEQG--PAATAALAWRPPGTDGVVPAT 402
TLH VVNESTVCLM HERRQTL+LI LA++ LA+Q P + P
Sbjct: 357 TLHGVVNESTVCLMGHERRQTLNLITMLAIRVLADQNVIPNVANVTCYYQPAPYVADANF 416
Query: 403 VNYYVTPVQPLLA---HAYPTWLPCN 425
NYY+ VQP+ Y TWLPCN
Sbjct: 417 SNYYIAQVQPVFTCQQQTYSTWLPCN 442
>gi|38570095 hypothetical protein LOC54855 [Homo sapiens]
Length = 391
Score = 473 bits (1218), Expect = e-133
Identities = 241/378 (63%), Positives = 291/378 (76%), Gaps = 3/378 (0%)
Query: 50 SGLSWPQVKRLDALLSEPIPIHGRGNFPTLSVQPRQIVQVVRSTLEEQGLHVHSVRLHGS 109
S L+W QV RL +L+E +PIHGRGNFPTL + + IVQ VRS LEE G+ VH VRL+GS
Sbjct: 15 SVLNWDQVSRLHEVLTEVVPIHGRGNFPTLEITLKDIVQTVRSRLEEAGIKVHDVRLNGS 74
Query: 110 AASHVLHPESGLGYKDLDLVFRVDLRSEASFQLTKAVVLACLLDFLPAGVSRAKITPLTL 169
AA HVL ++GLG KDLDL+F V L +EA FQL + VVL LL+FLP GV++ KI+P+TL
Sbjct: 75 AAGHVLVKDNGLGCKDLDLIFHVALPTEAEFQLVRDVVLCSLLNFLPEGVNKLKISPVTL 134
Query: 170 KEAYVQKLVKVCTDSDRWSLISLSNKSGKNVELKFVDSVRRQFEFSIDSFQIILDSLLLF 229
KEAYVQKLVKVCTD+DRWSLISLSNK+GKNVELKFVDS+RRQFEFS+DSFQIILDSLL F
Sbjct: 135 KEAYVQKLVKVCTDTDRWSLISLSNKNGKNVELKFVDSIRRQFEFSVDSFQIILDSLLFF 194
Query: 230 GQCSSTPMSEAFHPTVTGESLYGDFTEALEHLRHRVIATRSPEEIRGGGLLKYCHLLVRG 289
CS+ P+SE FHPTV GES+YGDF EA +HL++R+IAT++PEEIRGGGLLKY +LLVR
Sbjct: 195 YDCSNNPISEHFHPTVIGESMYGDFEEAFDHLQNRLIATKNPEEIRGGGLLKYSNLLVRD 254
Query: 290 FRPRPSTDVRALQRYMCSRFFIDFPDLVEQRRTLERYLEAHFGGADAARRYACLVTLHRV 349
FRP +++ L+RYMCSRFFIDFPD++EQ+R LE YL+ HF + + +Y L+ L RV
Sbjct: 255 FRPTDQEEIKTLERYMCSRFFIDFPDILEQQRKLETYLQNHFAEEERS-KYDYLMILRRV 313
Query: 350 VNESTVCLMNHERRQTLDLIAALALQALAEQG--PAATAALAWRPPGTDGVVPATVNYYV 407
VNESTVCLM HERRQTL+LI+ LAL+ LAEQ P+AT + P NYYV
Sbjct: 314 VNESTVCLMGHERRQTLNLISLLALRVLAEQNIIPSATNVTCYYQPAPYVSDGNFSNYYV 373
Query: 408 TPVQPLLAHAYPTWLPCN 425
+ YPTWLPCN
Sbjct: 374 AHPPVTYSQPYPTWLPCN 391
>gi|22749287 hypothetical protein LOC169966 [Homo sapiens]
Length = 389
Score = 378 bits (971), Expect = e-105
Identities = 192/365 (52%), Positives = 250/365 (68%), Gaps = 3/365 (0%)
Query: 50 SGLSWPQVKRLDALLSEPIPIHGRGNFPTLSVQPRQIVQVVRSTLEEQGLHVHSVRLHGS 109
+ L+W QV LD +L E IPIHG+GNFPT+ V+P+ I+ VV+ L QG+ V RL+GS
Sbjct: 7 TNLTWDQVITLDQVLDEVIPIHGKGNFPTMEVKPKDIIHVVKDQLIGQGIIVKDARLNGS 66
Query: 110 AASHVLHPESGLGYKDLDLVFRVDLRSEASFQLTKAVVLACLLDFLPAGVSRAKITPLTL 169
AS++L +G+ YKDLD++F V+L FQ+ K VL CLLDFLP V + K++P +
Sbjct: 67 VASYILASHNGISYKDLDVIFGVELPGNEEFQVVKDAVLDCLLDFLPKDVKKEKLSPDIM 126
Query: 170 KEAYVQKLVKVCTDSDRWSLISLSNKSGKNVELKFVDSVRRQFEFSIDSFQIILDSLLLF 229
K+AYVQKLVKVC D WSLISLSN +GKN+ELKFV S+RRQFEFS+DSFQI+LD +L F
Sbjct: 127 KDAYVQKLVKVCNGHDCWSLISLSNNTGKNLELKFVSSLRRQFEFSVDSFQIVLDPMLDF 186
Query: 230 GQCSSTPMSEAFHPTVTGESLYGDFTEALEHLRHRVIATRSPEEIRGGGLLKYCHLLVRG 289
+ +++ +P V ES+YGDF EA+ HL+H++I TR PEEIRGGGLLKYC LLV G
Sbjct: 187 YSDKNAKLTKESYPVVVAESMYGDFQEAMTHLQHKLICTRKPEEIRGGGLLKYCSLLVHG 246
Query: 290 FRPRPSTDVRALQRYMCSRFFIDFPDLVEQRRTLERYLEAHFGGADAARRYACLVTLHRV 349
F+P ++++ L+RYMCSRFFIDFP + EQ++ +E YL HF G + +Y L+TLH V
Sbjct: 247 FKPACMSEIKNLERYMCSRFFIDFPHIEEQQKKIESYLHNHFIG-EGMTKYDYLMTLHGV 305
Query: 350 VNESTVCLMNHERRQTLDLIAALALQALAEQG--PAATAALAWRPPGTDGVVPATVNYYV 407
VNESTVCLM++ERRQ L LI +AL+ L E P + P A YV
Sbjct: 306 VNESTVCLMSYERRQILHLITMMALKVLGELNILPNTQKVTCFYQPAPYFAAEARYPIYV 365
Query: 408 TPVQP 412
P P
Sbjct: 366 IPEPP 370
>gi|24497589 aristaless related homeobox [Homo sapiens]
Length = 562
Score = 33.9 bits (76), Expect = 0.29
Identities = 18/38 (47%), Positives = 19/38 (50%)
Query: 14 AAAQVGTAAATAVATAAPAGGGPDPEALSAFPGRHLSG 51
AAA AAA A ATA P G P P +A PG G
Sbjct: 104 AAAAAAAAAAAATATAGPRGEAPPPPPPTARPGERPDG 141
>gi|66730481 neuregulin 3 [Homo sapiens]
Length = 696
Score = 31.6 bits (70), Expect = 1.4
Identities = 19/34 (55%), Positives = 21/34 (61%), Gaps = 3/34 (8%)
Query: 4 SESGAERRDRAAAQVGTAAATAVATAAPAGGGPD 37
S GA A+A+ GTAAA A AA AGGGPD
Sbjct: 9 SPPGAASAAAASAEEGTAAAAA---AAAAGGGPD 39
>gi|41350201 epsin 1 isoform c [Homo sapiens]
Length = 550
Score = 30.4 bits (67), Expect = 3.2
Identities = 16/37 (43%), Positives = 19/37 (51%)
Query: 9 ERRDRAAAQVGTAAATAVATAAPAGGGPDPEALSAFP 45
E R A A TA A++A G GP PEA A+P
Sbjct: 142 EERAHALKTKEKLAQTATASSAAVGSGPPPEAEQAWP 178
>gi|194248095 epsin 1 isoform b [Homo sapiens]
Length = 576
Score = 30.4 bits (67), Expect = 3.2
Identities = 16/37 (43%), Positives = 19/37 (51%)
Query: 9 ERRDRAAAQVGTAAATAVATAAPAGGGPDPEALSAFP 45
E R A A TA A++A G GP PEA A+P
Sbjct: 142 EERAHALKTKEKLAQTATASSAAVGSGPPPEAEQAWP 178
>gi|194272148 epsin 1 isoform a [Homo sapiens]
Length = 662
Score = 30.4 bits (67), Expect = 3.2
Identities = 16/37 (43%), Positives = 19/37 (51%)
Query: 9 ERRDRAAAQVGTAAATAVATAAPAGGGPDPEALSAFP 45
E R A A TA A++A G GP PEA A+P
Sbjct: 253 EERAHALKTKEKLAQTATASSAAVGSGPPPEAEQAWP 289
>gi|116256340 SEC31 homolog A isoform 3 [Homo sapiens]
Length = 1205
Score = 30.4 bits (67), Expect = 3.2
Identities = 28/115 (24%), Positives = 43/115 (37%), Gaps = 18/115 (15%)
Query: 3 PSESGA--ERRDRAAAQVGTAAATAVATAAPAGGGPDPEALSAFPGRH------------ 48
P SGA + A +A A T P G DP AL+ P +
Sbjct: 946 PPSSGASFQHGGPGAPPSSSAYALPPGTTGPQNGWNDPPALNRVPKKKKMPENFMPPVPI 1005
Query: 49 ----LSGLSWPQVKRLDALLSEPIPIHGRGNFPTLSVQPRQIVQVVRSTLEEQGL 99
++ L PQ + L S P+P+ + +FP + Q V+ L + G+
Sbjct: 1006 TSPIMNPLGDPQSQMLQQQPSAPVPLSSQSSFPQPHLPGGQPFHGVQQPLGQTGM 1060
>gi|162951873 ventral anterior homeobox 1 isoform a [Homo sapiens]
Length = 334
Score = 30.0 bits (66), Expect = 4.2
Identities = 16/34 (47%), Positives = 18/34 (52%), Gaps = 1/34 (2%)
Query: 14 AAAQVGTAAATAVATAAPAG-GGPDPEALSAFPG 46
A A G+AAA A A PAG P P A+ PG
Sbjct: 219 AGAAAGSAAAAAAAAPGPAGAASPHPPAVGGAPG 252
>gi|110681708 zinc finger protein 579 [Homo sapiens]
Length = 562
Score = 30.0 bits (66), Expect = 4.2
Identities = 30/109 (27%), Positives = 39/109 (35%), Gaps = 15/109 (13%)
Query: 276 GGGLLKYCHLLVRGFRPRPSTDVRALQRYMCSRFFIDFPDLVEQRRTLERYLEAHFGGAD 335
G G + HL G + R Q C R F DL R+ + H GG
Sbjct: 390 GKGFRRRAHLRQHGVT---HSGARPFQCVRCQREFKRLADLA-------RHAQVHAGGPA 439
Query: 336 AARRYACLVTLHRVVNESTVCLMNHERRQTLDLIAALALQALAEQGPAA 384
C R + L+ H+R +L A ALQAL Q P +
Sbjct: 440 PHPCPRCPRRFSRAYS-----LLRHQRCHRAELERAAALQALQAQAPTS 483
>gi|24497554 homeobox A13 [Homo sapiens]
Length = 388
Score = 29.6 bits (65), Expect = 5.4
Identities = 16/35 (45%), Positives = 17/35 (48%)
Query: 4 SESGAERRDRAAAQVGTAAATAVATAAPAGGGPDP 38
S G AAA AAA A A AA + GGP P
Sbjct: 107 SAPGEAPPSAAAAAAAAAAAAAAAAAASSSGGPGP 141
>gi|27436925 synoviolin 1 isoform a [Homo sapiens]
Length = 616
Score = 29.3 bits (64), Expect = 7.1
Identities = 19/41 (46%), Positives = 21/41 (51%), Gaps = 3/41 (7%)
Query: 3 PSESGAERRDRAAAQV---GTAAATAVATAAPAGGGPDPEA 40
PS S A R AA GT+A A ATA+ G G PEA
Sbjct: 407 PSTSAALSRPSGAATTTAAGTSATAASATASGPGSGSAPEA 447
>gi|115430252 serine threonine kinase 39 (STE20/SPS1 homolog, yeast)
[Homo sapiens]
Length = 545
Score = 29.3 bits (64), Expect = 7.1
Identities = 42/167 (25%), Positives = 62/167 (37%), Gaps = 11/167 (6%)
Query: 14 AAAQVGTAAATAVATAAPAGGGPDPEALSAFPGRHLSGLSWPQVKRLDALLSEPIPIHGR 73
A AAA A ATAAPA P A + P G WP + R L E I
Sbjct: 18 APVTAAAAAAPAAATAAPAPAAPAAPAPAPAPAAQAVG--WP-ICRDAYELQEVIGSGAT 74
Query: 74 GNFPTLSVQPRQ-IVQVVRSTLEEQGLHVHSVRLHGSAASHVLHPESGLGYKDLDLVFRV 132
+PRQ V + R LE+ + + A S HP Y
Sbjct: 75 AVVQAALCKPRQERVAIKRINLEKCQTSMDELLKEIQAMSQCSHPNVVTYYTSF------ 128
Query: 133 DLRSEASFQLTKAVVLACLLDFLPAGVSRAKITPLTLKEAYVQKLVK 179
+ + + + K + +LD + V+R + L+EA + ++K
Sbjct: 129 -VVKDELWLVMKLLSGGSMLDIIKYIVNRGEHKNGVLEEAIIATILK 174
>gi|38016945 deformed epidermal autoregulatory factor 1 [Homo
sapiens]
Length = 565
Score = 29.3 bits (64), Expect = 7.1
Identities = 20/43 (46%), Positives = 24/43 (55%), Gaps = 1/43 (2%)
Query: 1 MMPSESGAERRDRA-AAQVGTAAATAVATAAPAGGGPDPEALS 42
M S+S A++ A AA V AAA A A AA AGG + LS
Sbjct: 1 MEDSDSAAKQLGLAEAAAVAAAAAVAAAAAAAAGGEAEEPVLS 43
>gi|195539337 S-adenosylhomocysteine hydrolase-like 2 isoform b
[Homo sapiens]
Length = 610
Score = 29.3 bits (64), Expect = 7.1
Identities = 27/105 (25%), Positives = 41/105 (39%), Gaps = 22/105 (20%)
Query: 14 AAAQVGTAAATAVATAAPAGGGPDPEALSAFPGRHLSGLSWPQVKRLDALLSEPIPIHGR 73
A +Q+G + A A A PAGGG DPEA A +E P+ G
Sbjct: 27 AESQLGLSTAAVGAMAPPAGGG-DPEA--------------------PAPAAERPPVPGP 65
Query: 74 GNFPTLSVQPRQIVQVVRSTLEEQGLHVHSVRLHGSAASHVLHPE 118
G+ P ++ P S ++ H H + H ++ P+
Sbjct: 66 GSGPAAALSPAAGKVPQASAMKRSDPH-HQHQRHRDGGEALVSPD 109
>gi|24308043 S-adenosylhomocysteine hydrolase-like 2 isoform a [Homo
sapiens]
Length = 611
Score = 29.3 bits (64), Expect = 7.1
Identities = 27/105 (25%), Positives = 41/105 (39%), Gaps = 22/105 (20%)
Query: 14 AAAQVGTAAATAVATAAPAGGGPDPEALSAFPGRHLSGLSWPQVKRLDALLSEPIPIHGR 73
A +Q+G + A A A PAGGG DPEA A +E P+ G
Sbjct: 27 AESQLGLSTAAVGAMAPPAGGG-DPEA--------------------PAPAAERPPVPGP 65
Query: 74 GNFPTLSVQPRQIVQVVRSTLEEQGLHVHSVRLHGSAASHVLHPE 118
G+ P ++ P S ++ H H + H ++ P+
Sbjct: 66 GSGPAAALSPAAGKVPQASAMKRSDPH-HQHQRHRDGGEALVSPD 109
>gi|169216044 PREDICTED: similar to hCG2041320 [Homo sapiens]
Length = 318
Score = 29.3 bits (64), Expect = 7.1
Identities = 24/80 (30%), Positives = 39/80 (48%), Gaps = 5/80 (6%)
Query: 24 TAVATAAPAGGGPDPEALSAFPGRHLS-GLSWPQVKRLDALLSEPIPIHGRGNFPTLSVQ 82
T +A AG P + A GR +S G+ PQ L+ P+P G + ++ Q
Sbjct: 235 TGIARVPLAGAAGGPGVVRA-AGRGVSAGVPIPQAP---GGLAGPVPGVGGPSQQVMTPQ 290
Query: 83 PRQIVQVVRSTLEEQGLHVH 102
R +++ ST +++GLH H
Sbjct: 291 RRALLEPQHSTHQDRGLHPH 310
>gi|169215838 PREDICTED: similar to hCG2041320 [Homo sapiens]
Length = 318
Score = 29.3 bits (64), Expect = 7.1
Identities = 24/80 (30%), Positives = 39/80 (48%), Gaps = 5/80 (6%)
Query: 24 TAVATAAPAGGGPDPEALSAFPGRHLS-GLSWPQVKRLDALLSEPIPIHGRGNFPTLSVQ 82
T +A AG P + A GR +S G+ PQ L+ P+P G + ++ Q
Sbjct: 235 TGIARVPLAGAAGGPGVVRA-AGRGVSAGVPIPQAP---GGLAGPVPGVGGPSQQVMTPQ 290
Query: 83 PRQIVQVVRSTLEEQGLHVH 102
R +++ ST +++GLH H
Sbjct: 291 RRALLEPQHSTHQDRGLHPH 310
>gi|239749940 PREDICTED: similar to deformed epidermal
autoregulatory factor 1 [Homo sapiens]
Length = 426
Score = 29.3 bits (64), Expect = 7.1
Identities = 20/43 (46%), Positives = 24/43 (55%), Gaps = 1/43 (2%)
Query: 1 MMPSESGAERRDRA-AAQVGTAAATAVATAAPAGGGPDPEALS 42
M S+S A++ A AA V AAA A A AA AGG + LS
Sbjct: 1 MEDSDSAAKQLGLAEAAAVAAAAAVAAAAAAAAGGEAEEPVLS 43
>gi|169215637 PREDICTED: similar to hCG2041320 [Homo sapiens]
Length = 318
Score = 29.3 bits (64), Expect = 7.1
Identities = 24/80 (30%), Positives = 39/80 (48%), Gaps = 5/80 (6%)
Query: 24 TAVATAAPAGGGPDPEALSAFPGRHLS-GLSWPQVKRLDALLSEPIPIHGRGNFPTLSVQ 82
T +A AG P + A GR +S G+ PQ L+ P+P G + ++ Q
Sbjct: 235 TGIARVPLAGAAGGPGVVRA-AGRGVSAGVPIPQAP---GGLAGPVPGVGGPSQQVMTPQ 290
Query: 83 PRQIVQVVRSTLEEQGLHVH 102
R +++ ST +++GLH H
Sbjct: 291 RRALLEPQHSTHQDRGLHPH 310
>gi|224451135 splicing factor, arginine/serine-rich 15 isoform 3
[Homo sapiens]
Length = 1125
Score = 29.3 bits (64), Expect = 7.1
Identities = 22/82 (26%), Positives = 32/82 (39%), Gaps = 12/82 (14%)
Query: 14 AAAQVGTAAATAVATAAPAGGGPDP-EALSAFPGRHLSGLSWPQVKRLDAL--------- 63
AAA AT A AAPA P P +A FPG + ++ Q + +D
Sbjct: 291 AAAVPPAPTATVPAAAAPAAASPPPPQAPFGFPGDGMQQPAYTQHQNMDQFQPRMMGIQQ 350
Query: 64 --LSEPIPIHGRGNFPTLSVQP 83
+ +P+ G P + P
Sbjct: 351 DPMHHQVPLPPNGQMPGFGLLP 372
>gi|224451133 splicing factor, arginine/serine-rich 15 isoform 2
[Homo sapiens]
Length = 1132
Score = 29.3 bits (64), Expect = 7.1
Identities = 22/82 (26%), Positives = 32/82 (39%), Gaps = 12/82 (14%)
Query: 14 AAAQVGTAAATAVATAAPAGGGPDP-EALSAFPGRHLSGLSWPQVKRLDAL--------- 63
AAA AT A AAPA P P +A FPG + ++ Q + +D
Sbjct: 276 AAAVPPAPTATVPAAAAPAAASPPPPQAPFGFPGDGMQQPAYTQHQNMDQFQPRMMGIQQ 335
Query: 64 --LSEPIPIHGRGNFPTLSVQP 83
+ +P+ G P + P
Sbjct: 336 DPMHHQVPLPPNGQMPGFGLLP 357
>gi|40789229 splicing factor, arginine/serine-rich 15 isoform 1
[Homo sapiens]
Length = 1147
Score = 29.3 bits (64), Expect = 7.1
Identities = 22/82 (26%), Positives = 32/82 (39%), Gaps = 12/82 (14%)
Query: 14 AAAQVGTAAATAVATAAPAGGGPDP-EALSAFPGRHLSGLSWPQVKRLDAL--------- 63
AAA AT A AAPA P P +A FPG + ++ Q + +D
Sbjct: 291 AAAVPPAPTATVPAAAAPAAASPPPPQAPFGFPGDGMQQPAYTQHQNMDQFQPRMMGIQQ 350
Query: 64 --LSEPIPIHGRGNFPTLSVQP 83
+ +P+ G P + P
Sbjct: 351 DPMHHQVPLPPNGQMPGFGLLP 372
>gi|4507973 zinc finger protein of the cerebellum 3 [Homo sapiens]
Length = 467
Score = 29.3 bits (64), Expect = 7.1
Identities = 18/50 (36%), Positives = 22/50 (44%), Gaps = 1/50 (2%)
Query: 6 SGAERRDRAAAQVGTAAATAVATAAPAGGGPDPEALSAFPGRHLSGLSWP 55
SG Q G A +A + APAG P+P + FPG H G P
Sbjct: 125 SGLSEAASGGGQHGLFAGSASSLHAPAGI-PEPPSYLLFPGLHEQGAGHP 173
>gi|5902724 neuro-oncological ventral antigen 2 [Homo sapiens]
Length = 492
Score = 29.3 bits (64), Expect = 7.1
Identities = 20/51 (39%), Positives = 24/51 (47%)
Query: 3 PSESGAERRDRAAAQVGTAAATAVATAAPAGGGPDPEALSAFPGRHLSGLS 53
P S A+ AAA AA+ + A AG G P AL AF G L +S
Sbjct: 230 PYASPADVLPAAAAASAAAASGLLGPAGLAGVGAFPAALPAFSGTDLLAIS 280
>gi|117553584 adaptor-related protein complex 3, delta 1 subunit
isoform 1 [Homo sapiens]
Length = 1112
Score = 28.9 bits (63), Expect = 9.3
Identities = 45/217 (20%), Positives = 85/217 (39%), Gaps = 24/217 (11%)
Query: 77 PTLSVQPRQIVQVVRSTLEEQGLHVHSVRLHGSAASHVLHPESGLGYKDLDLVFRVD--- 133
P S + VQ +R +E+ ++ + L + HP+S +KDL L D
Sbjct: 204 PNHSASIQLCVQKLRILIEDSDQNLKYLGLLAMSKILKTHPKSVQSHKDLILQCLDDKDE 263
Query: 134 -LRSEASFQLTKAVVLACLLDFLPAGVSRA-KITPLTLKEAYVQKLVKVCTDSD------ 185
+R A L V L++ + ++ K T ++ + K++ +C+ S+
Sbjct: 264 SIRLRALDLLYGMVSKKNLMEIVKKLMTHVDKAEGTTYRDELLTKIIDICSQSNYQYITN 323
Query: 186 -RWSLISL-------SNKSGKNVELKFVD---SVRRQFEFSIDSFQIILDSLLLFGQCSS 234
W + L + G + + +D V+ +F++ +LDS L SS
Sbjct: 324 FEWYISILVELTRLEGTRHGHLIAAQMLDVAIRVKAIRKFAVSQMSALLDSAHLL--ASS 381
Query: 235 TPMSEAFHPTVTGESLYGDFTEALEHLRHRVIATRSP 271
T + + G+F+E L+ H + A P
Sbjct: 382 TQRNGICEVLYAAAWICGEFSEHLQEPHHTLEAMLRP 418
>gi|117553580 adaptor-related protein complex 3, delta 1 subunit
isoform 2 [Homo sapiens]
Length = 1153
Score = 28.9 bits (63), Expect = 9.3
Identities = 45/217 (20%), Positives = 85/217 (39%), Gaps = 24/217 (11%)
Query: 77 PTLSVQPRQIVQVVRSTLEEQGLHVHSVRLHGSAASHVLHPESGLGYKDLDLVFRVD--- 133
P S + VQ +R +E+ ++ + L + HP+S +KDL L D
Sbjct: 295 PNHSASIQLCVQKLRILIEDSDQNLKYLGLLAMSKILKTHPKSVQSHKDLILQCLDDKDE 354
Query: 134 -LRSEASFQLTKAVVLACLLDFLPAGVSRA-KITPLTLKEAYVQKLVKVCTDSD------ 185
+R A L V L++ + ++ K T ++ + K++ +C+ S+
Sbjct: 355 SIRLRALDLLYGMVSKKNLMEIVKKLMTHVDKAEGTTYRDELLTKIIDICSQSNYQYITN 414
Query: 186 -RWSLISL-------SNKSGKNVELKFVD---SVRRQFEFSIDSFQIILDSLLLFGQCSS 234
W + L + G + + +D V+ +F++ +LDS L SS
Sbjct: 415 FEWYISILVELTRLEGTRHGHLIAAQMLDVAIRVKAIRKFAVSQMSALLDSAHLL--ASS 472
Query: 235 TPMSEAFHPTVTGESLYGDFTEALEHLRHRVIATRSP 271
T + + G+F+E L+ H + A P
Sbjct: 473 TQRNGICEVLYAAAWICGEFSEHLQEPHHTLEAMLRP 509
>gi|20336188 paired basic amino acid cleaving system 4 isoform e
preproprotein [Homo sapiens]
Length = 623
Score = 28.9 bits (63), Expect = 9.3
Identities = 20/53 (37%), Positives = 22/53 (41%)
Query: 3 PSESGAERRDRAAAQVGTAAATAVATAAPAGGGPDPEALSAFPGRHLSGLSWP 55
P G RAAA TAA A A GGP L+ P R L L+ P
Sbjct: 6 PPAPGPRPPPRAAAATDTAAGAGGAGGAGGAGGPGFRPLAPRPWRWLLLLALP 58
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.321 0.135 0.406
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 16,690,672
Number of Sequences: 37866
Number of extensions: 762887
Number of successful extensions: 2796
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 18
Number of HSP's successfully gapped in prelim test: 19
Number of HSP's that attempted gapping in prelim test: 2738
Number of HSP's gapped (non-prelim): 56
length of query: 425
length of database: 18,247,518
effective HSP length: 105
effective length of query: 320
effective length of database: 14,271,588
effective search space: 4566908160
effective search space used: 4566908160
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 63 (28.9 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.