Guide to the Human Genome
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Search of human proteins with 208022622

BLASTP 2.2.11 [Jun-05-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|208022622 ubiquitin and ribosomal protein S27a precursor
[Homo sapiens]
         (156 letters)

Database: hs.faa 
           37,866 sequences; 18,247,518 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|208022622 ubiquitin and ribosomal protein S27a precursor [Hom...   323   5e-89
gi|4506713 ubiquitin and ribosomal protein S27a precursor [Homo ...   323   5e-89
gi|239757745 PREDICTED: similar to hCG1790904 [Homo sapiens]          193   4e-50
gi|239752254 PREDICTED: similar to hCG1790904 [Homo sapiens]          193   4e-50
gi|239746765 PREDICTED: similar to hCG1790904 [Homo sapiens]          193   4e-50
gi|11024714 ubiquitin B precursor [Homo sapiens]                      151   2e-37
gi|67191208 ubiquitin C [Homo sapiens]                                151   2e-37
gi|4507761 ubiquitin and ribosomal protein L40 precursor [Homo s...   151   2e-37
gi|77539055 ubiquitin and ribosomal protein L40 precursor [Homo ...   151   2e-37
gi|5453760 neural precursor cell expressed, developmentally down...    97   6e-21
gi|190341072 AN1, ubiquitin-like, homolog [Homo sapiens]               72   1e-13
gi|190341070 AN1, ubiquitin-like, homolog [Homo sapiens]               72   1e-13
gi|7657667 ubiquitin-like 4 [Homo sapiens]                             63   1e-10
gi|4503659 ubiquitin-like protein fubi and ribosomal protein S30...    55   3e-08
gi|4826774 ISG15 ubiquitin-like modifier [Homo sapiens]                54   5e-08
gi|4506387 UV excision repair protein RAD23 homolog B [Homo sapi...    52   2e-07
gi|53831995 splicing factor 3a, subunit 1, 120kDa isoform 2 [Hom...    52   3e-07
gi|5032087 splicing factor 3a, subunit 1, 120kDa isoform 1 [Homo...    52   3e-07
gi|115430235 ubiquitin-like with PHD and ring finger domains 1 i...    51   3e-07
gi|115430233 ubiquitin-like with PHD and ring finger domains 1 i...    51   3e-07
gi|11321577 2'-5'-oligoadenylate synthetase-like isoform a [Homo...    51   5e-07
gi|169790971 parkin isoform 2 [Homo sapiens]                           50   6e-07
gi|169790969 parkin isoform 1 [Homo sapiens]                           50   6e-07
gi|222352096 ubiquitin D [Homo sapiens]                                50   6e-07
gi|44662819 ubiquitin-like 4B [Homo sapiens]                           50   6e-07
gi|23312364 ubiquitin-like with PHD and ring finger domains 2 [H...    49   2e-06
gi|13376439 ubiquitin domain containing 1 [Homo sapiens]               48   3e-06
gi|149158696 HLA-B associated transcript-3 isoform b [Homo sapiens]    47   7e-06
gi|18375632 HLA-B associated transcript-3 isoform b [Homo sapiens]     47   7e-06
gi|18375630 HLA-B associated transcript-3 isoform b [Homo sapiens]     47   7e-06

>gi|208022622 ubiquitin and ribosomal protein S27a precursor [Homo
           sapiens]
          Length = 156

 Score =  323 bits (827), Expect = 5e-89
 Identities = 156/156 (100%), Positives = 156/156 (100%)

Query: 1   MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60
           MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN
Sbjct: 1   MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60

Query: 61  IQKESTLHLVLRLRGGAKKRKKKSYTTPKKNKHKRKKVKLAVLKYYKVDENGKISRLRRE 120
           IQKESTLHLVLRLRGGAKKRKKKSYTTPKKNKHKRKKVKLAVLKYYKVDENGKISRLRRE
Sbjct: 61  IQKESTLHLVLRLRGGAKKRKKKSYTTPKKNKHKRKKVKLAVLKYYKVDENGKISRLRRE 120

Query: 121 CPSDECGAGVFMASHFDRHYCGKCCLTYCFNKPEDK 156
           CPSDECGAGVFMASHFDRHYCGKCCLTYCFNKPEDK
Sbjct: 121 CPSDECGAGVFMASHFDRHYCGKCCLTYCFNKPEDK 156


>gi|4506713 ubiquitin and ribosomal protein S27a precursor [Homo
           sapiens]
          Length = 156

 Score =  323 bits (827), Expect = 5e-89
 Identities = 156/156 (100%), Positives = 156/156 (100%)

Query: 1   MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60
           MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN
Sbjct: 1   MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60

Query: 61  IQKESTLHLVLRLRGGAKKRKKKSYTTPKKNKHKRKKVKLAVLKYYKVDENGKISRLRRE 120
           IQKESTLHLVLRLRGGAKKRKKKSYTTPKKNKHKRKKVKLAVLKYYKVDENGKISRLRRE
Sbjct: 61  IQKESTLHLVLRLRGGAKKRKKKSYTTPKKNKHKRKKVKLAVLKYYKVDENGKISRLRRE 120

Query: 121 CPSDECGAGVFMASHFDRHYCGKCCLTYCFNKPEDK 156
           CPSDECGAGVFMASHFDRHYCGKCCLTYCFNKPEDK
Sbjct: 121 CPSDECGAGVFMASHFDRHYCGKCCLTYCFNKPEDK 156


>gi|239757745 PREDICTED: similar to hCG1790904 [Homo sapiens]
          Length = 334

 Score =  193 bits (491), Expect = 4e-50
 Identities = 103/117 (88%), Positives = 105/117 (89%), Gaps = 1/117 (0%)

Query: 1   MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60
           +QIFVKTL GKTITLEVEPSD IENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSD N
Sbjct: 69  LQIFVKTLRGKTITLEVEPSDAIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDCN 128

Query: 61  IQKESTLHLVLRLRGGAKKRKKKSYTTPKKNKHKRKKVKLAVLKYYKVDENGKISRL 117
           IQKE TLHL+LRL G AKKR KKSY TPKKNKHKRKKVKL VLK YKVDEN KIS L
Sbjct: 129 IQKEPTLHLLLRLCGVAKKR-KKSYPTPKKNKHKRKKVKLDVLKCYKVDENDKISAL 184


>gi|239752254 PREDICTED: similar to hCG1790904 [Homo sapiens]
          Length = 334

 Score =  193 bits (491), Expect = 4e-50
 Identities = 103/117 (88%), Positives = 105/117 (89%), Gaps = 1/117 (0%)

Query: 1   MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60
           +QIFVKTL GKTITLEVEPSD IENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSD N
Sbjct: 69  LQIFVKTLRGKTITLEVEPSDAIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDCN 128

Query: 61  IQKESTLHLVLRLRGGAKKRKKKSYTTPKKNKHKRKKVKLAVLKYYKVDENGKISRL 117
           IQKE TLHL+LRL G AKKR KKSY TPKKNKHKRKKVKL VLK YKVDEN KIS L
Sbjct: 129 IQKEPTLHLLLRLCGVAKKR-KKSYPTPKKNKHKRKKVKLDVLKCYKVDENDKISAL 184


>gi|239746765 PREDICTED: similar to hCG1790904 [Homo sapiens]
          Length = 334

 Score =  193 bits (491), Expect = 4e-50
 Identities = 103/117 (88%), Positives = 105/117 (89%), Gaps = 1/117 (0%)

Query: 1   MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60
           +QIFVKTL GKTITLEVEPSD IENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSD N
Sbjct: 69  LQIFVKTLRGKTITLEVEPSDAIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDCN 128

Query: 61  IQKESTLHLVLRLRGGAKKRKKKSYTTPKKNKHKRKKVKLAVLKYYKVDENGKISRL 117
           IQKE TLHL+LRL G AKKR KKSY TPKKNKHKRKKVKL VLK YKVDEN KIS L
Sbjct: 129 IQKEPTLHLLLRLCGVAKKR-KKSYPTPKKNKHKRKKVKLDVLKCYKVDENDKISAL 184


>gi|11024714 ubiquitin B precursor [Homo sapiens]
          Length = 229

 Score =  151 bits (381), Expect = 2e-37
 Identities = 76/76 (100%), Positives = 76/76 (100%)

Query: 1  MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60
          MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN
Sbjct: 1  MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60

Query: 61 IQKESTLHLVLRLRGG 76
          IQKESTLHLVLRLRGG
Sbjct: 61 IQKESTLHLVLRLRGG 76



 Score =  151 bits (381), Expect = 2e-37
 Identities = 76/76 (100%), Positives = 76/76 (100%)

Query: 1   MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60
           MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN
Sbjct: 77  MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 136

Query: 61  IQKESTLHLVLRLRGG 76
           IQKESTLHLVLRLRGG
Sbjct: 137 IQKESTLHLVLRLRGG 152



 Score =  151 bits (381), Expect = 2e-37
 Identities = 76/76 (100%), Positives = 76/76 (100%)

Query: 1   MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60
           MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN
Sbjct: 153 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 212

Query: 61  IQKESTLHLVLRLRGG 76
           IQKESTLHLVLRLRGG
Sbjct: 213 IQKESTLHLVLRLRGG 228


>gi|67191208 ubiquitin C [Homo sapiens]
          Length = 685

 Score =  151 bits (381), Expect = 2e-37
 Identities = 76/76 (100%), Positives = 76/76 (100%)

Query: 1  MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60
          MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN
Sbjct: 1  MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60

Query: 61 IQKESTLHLVLRLRGG 76
          IQKESTLHLVLRLRGG
Sbjct: 61 IQKESTLHLVLRLRGG 76



 Score =  151 bits (381), Expect = 2e-37
 Identities = 76/76 (100%), Positives = 76/76 (100%)

Query: 1   MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60
           MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN
Sbjct: 77  MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 136

Query: 61  IQKESTLHLVLRLRGG 76
           IQKESTLHLVLRLRGG
Sbjct: 137 IQKESTLHLVLRLRGG 152



 Score =  151 bits (381), Expect = 2e-37
 Identities = 76/76 (100%), Positives = 76/76 (100%)

Query: 1   MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60
           MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN
Sbjct: 229 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 288

Query: 61  IQKESTLHLVLRLRGG 76
           IQKESTLHLVLRLRGG
Sbjct: 289 IQKESTLHLVLRLRGG 304



 Score =  151 bits (381), Expect = 2e-37
 Identities = 76/76 (100%), Positives = 76/76 (100%)

Query: 1   MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60
           MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN
Sbjct: 305 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 364

Query: 61  IQKESTLHLVLRLRGG 76
           IQKESTLHLVLRLRGG
Sbjct: 365 IQKESTLHLVLRLRGG 380



 Score =  151 bits (381), Expect = 2e-37
 Identities = 76/76 (100%), Positives = 76/76 (100%)

Query: 1   MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60
           MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN
Sbjct: 381 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 440

Query: 61  IQKESTLHLVLRLRGG 76
           IQKESTLHLVLRLRGG
Sbjct: 441 IQKESTLHLVLRLRGG 456



 Score =  151 bits (381), Expect = 2e-37
 Identities = 76/76 (100%), Positives = 76/76 (100%)

Query: 1   MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60
           MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN
Sbjct: 457 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 516

Query: 61  IQKESTLHLVLRLRGG 76
           IQKESTLHLVLRLRGG
Sbjct: 517 IQKESTLHLVLRLRGG 532



 Score =  151 bits (381), Expect = 2e-37
 Identities = 76/76 (100%), Positives = 76/76 (100%)

Query: 1   MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60
           MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN
Sbjct: 533 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 592

Query: 61  IQKESTLHLVLRLRGG 76
           IQKESTLHLVLRLRGG
Sbjct: 593 IQKESTLHLVLRLRGG 608



 Score =  151 bits (381), Expect = 2e-37
 Identities = 76/76 (100%), Positives = 76/76 (100%)

Query: 1   MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60
           MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN
Sbjct: 609 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 668

Query: 61  IQKESTLHLVLRLRGG 76
           IQKESTLHLVLRLRGG
Sbjct: 669 IQKESTLHLVLRLRGG 684



 Score =  148 bits (373), Expect = 2e-36
 Identities = 75/76 (98%), Positives = 75/76 (98%)

Query: 1   MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60
           MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIP DQQRLIFAGKQLEDGRTLSDYN
Sbjct: 153 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPSDQQRLIFAGKQLEDGRTLSDYN 212

Query: 61  IQKESTLHLVLRLRGG 76
           IQKESTLHLVLRLRGG
Sbjct: 213 IQKESTLHLVLRLRGG 228


>gi|4507761 ubiquitin and ribosomal protein L40 precursor [Homo
          sapiens]
          Length = 128

 Score =  151 bits (381), Expect = 2e-37
 Identities = 76/76 (100%), Positives = 76/76 (100%)

Query: 1  MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60
          MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN
Sbjct: 1  MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60

Query: 61 IQKESTLHLVLRLRGG 76
          IQKESTLHLVLRLRGG
Sbjct: 61 IQKESTLHLVLRLRGG 76


>gi|77539055 ubiquitin and ribosomal protein L40 precursor [Homo
          sapiens]
          Length = 128

 Score =  151 bits (381), Expect = 2e-37
 Identities = 76/76 (100%), Positives = 76/76 (100%)

Query: 1  MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60
          MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN
Sbjct: 1  MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60

Query: 61 IQKESTLHLVLRLRGG 76
          IQKESTLHLVLRLRGG
Sbjct: 61 IQKESTLHLVLRLRGG 76


>gi|5453760 neural precursor cell expressed, developmentally
          down-regulated 8 [Homo sapiens]
          Length = 81

 Score = 97.1 bits (240), Expect = 6e-21
 Identities = 45/81 (55%), Positives = 61/81 (75%)

Query: 1  MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60
          M I VKTLTGK I +++EP+D +E +K ++++KEGIPP QQRLI++GKQ+ D +T +DY 
Sbjct: 1  MLIKVKTLTGKEIEIDIEPTDKVERIKERVEEKEGIPPQQQRLIYSGKQMNDEKTAADYK 60

Query: 61 IQKESTLHLVLRLRGGAKKRK 81
          I   S LHLVL LRGG   R+
Sbjct: 61 ILGGSVLHLVLALRGGGGLRQ 81


>gi|190341072 AN1, ubiquitin-like, homolog [Homo sapiens]
          Length = 727

 Score = 72.4 bits (176), Expect = 1e-13
 Identities = 37/76 (48%), Positives = 52/76 (68%)

Query: 1   MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60
           M++F++TLTG    L V P +T+ +VKAKI+  EGIP  +Q LI+   +LE+   L+DYN
Sbjct: 28  MELFIETLTGTCFELRVSPFETVISVKAKIRRLEGIPICRQHLIWNNMELENDYCLNDYN 87

Query: 61  IQKESTLHLVLRLRGG 76
           I +  TL LVL +RGG
Sbjct: 88  ISEGCTLKLVLAMRGG 103


>gi|190341070 AN1, ubiquitin-like, homolog [Homo sapiens]
          Length = 727

 Score = 72.4 bits (176), Expect = 1e-13
 Identities = 37/76 (48%), Positives = 52/76 (68%)

Query: 1   MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60
           M++F++TLTG    L V P +T+ +VKAKI+  EGIP  +Q LI+   +LE+   L+DYN
Sbjct: 28  MELFIETLTGTCFELRVSPFETVISVKAKIRRLEGIPICRQHLIWNNMELENDYCLNDYN 87

Query: 61  IQKESTLHLVLRLRGG 76
           I +  TL LVL +RGG
Sbjct: 88  ISEGCTLKLVLAMRGG 103


>gi|7657667 ubiquitin-like 4 [Homo sapiens]
          Length = 157

 Score = 62.8 bits (151), Expect = 1e-10
 Identities = 30/72 (41%), Positives = 46/72 (63%)

Query: 1  MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60
          MQ+ VK L G+  +L+V   + +  +K  + +K  +P  QQRL+F GK L DG+ LSDY+
Sbjct: 1  MQLTVKALQGRECSLQVPEDELVSTLKQLVSEKLNVPVRQQRLLFKGKALADGKRLSDYS 60

Query: 61 IQKESTLHLVLR 72
          I   S L+LV++
Sbjct: 61 IGPNSKLNLVVK 72


>gi|4503659 ubiquitin-like protein fubi and ribosomal protein S30
           precursor [Homo sapiens]
          Length = 133

 Score = 54.7 bits (130), Expect = 3e-08
 Identities = 35/104 (33%), Positives = 53/104 (50%), Gaps = 7/104 (6%)

Query: 1   MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60
           MQ+FV+    +  T EV   +T+  +KA +   EGI P+ Q ++ AG  LED  TL    
Sbjct: 1   MQLFVRAQ--ELHTFEVTGQETVAQIKAHVASLEGIAPEDQVVLLAGAPLEDEATLGQCG 58

Query: 61  IQKESTLHLVLRLRGG-----AKKRKKKSYTTPKKNKHKRKKVK 99
           ++  +TL +  R+ GG       +  K    TPK  K ++KK K
Sbjct: 59  VEALTTLEVAGRMLGGKVHGSLARAGKVRGQTPKVAKQEKKKKK 102


>gi|4826774 ISG15 ubiquitin-like modifier [Homo sapiens]
          Length = 165

 Score = 53.9 bits (128), Expect = 5e-08
 Identities = 28/76 (36%), Positives = 44/76 (57%)

Query: 1   MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60
           + I V+   G++ T EV  + T+ ++K ++   EG+  D   L F GK LED   L +Y 
Sbjct: 82  LSILVRNNKGRSSTYEVRLTQTVAHLKQQVSGLEGVQDDLFWLTFEGKPLEDQLPLGEYG 141

Query: 61  IQKESTLHLVLRLRGG 76
           ++  ST+ + LRLRGG
Sbjct: 142 LKPLSTVFMNLRLRGG 157


>gi|4506387 UV excision repair protein RAD23 homolog B [Homo
          sapiens]
          Length = 409

 Score = 52.0 bits (123), Expect = 2e-07
 Identities = 28/91 (30%), Positives = 54/91 (59%), Gaps = 11/91 (12%)

Query: 1  MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEG---IPPDQQRLIFAGKQLEDGRTLS 57
          MQ+ +KTL  +T  ++++P +T++ +K KI+ ++G    P   Q+LI+AGK L D   L 
Sbjct: 1  MQVTLKTLQQQTFKIDIDPEETVKALKEKIESEKGKDAFPVAGQKLIYAGKILNDDTALK 60

Query: 58 DYNIQKESTLHLVLRLRGGAKKRKKKSYTTP 88
          +Y I +++ + +++         K K+ +TP
Sbjct: 61 EYKIDEKNFVVVMV--------TKPKAVSTP 83


>gi|53831995 splicing factor 3a, subunit 1, 120kDa isoform 2 [Homo
           sapiens]
          Length = 728

 Score = 51.6 bits (122), Expect = 3e-07
 Identities = 23/72 (31%), Positives = 42/72 (58%)

Query: 8   LTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTL 67
           L G+ +   +  +D +  +K KI +  G+P  +Q+L + G  ++D  +L+ YN+   + +
Sbjct: 657 LNGQVLVFTLPLTDQVSVIKVKIHEATGMPAGKQKLQYEGIFIKDSNSLAYYNMANGAVI 716

Query: 68  HLVLRLRGGAKK 79
           HL L+ RGG KK
Sbjct: 717 HLALKERGGRKK 728


>gi|5032087 splicing factor 3a, subunit 1, 120kDa isoform 1 [Homo
           sapiens]
          Length = 793

 Score = 51.6 bits (122), Expect = 3e-07
 Identities = 23/72 (31%), Positives = 42/72 (58%)

Query: 8   LTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTL 67
           L G+ +   +  +D +  +K KI +  G+P  +Q+L + G  ++D  +L+ YN+   + +
Sbjct: 722 LNGQVLVFTLPLTDQVSVIKVKIHEATGMPAGKQKLQYEGIFIKDSNSLAYYNMANGAVI 781

Query: 68  HLVLRLRGGAKK 79
           HL L+ RGG KK
Sbjct: 782 HLALKERGGRKK 793


>gi|115430235 ubiquitin-like with PHD and ring finger domains 1
          isoform 1 [Homo sapiens]
          Length = 793

 Score = 51.2 bits (121), Expect = 3e-07
 Identities = 28/74 (37%), Positives = 46/74 (62%), Gaps = 2/74 (2%)

Query: 1  MQIFVKTLTGK-TITLE-VEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSD 58
          M I V+T+ G+ T T++ +     +E ++ KIQ+   + P  QRL + GKQ+EDG TL D
Sbjct: 1  MWIQVRTMDGRQTHTVDSLSRLTKVEELRRKIQELFHVEPGLQRLFYRGKQMEDGHTLFD 60

Query: 59 YNIQKESTLHLVLR 72
          Y ++   T+ L++R
Sbjct: 61 YEVRLNDTIQLLVR 74


>gi|115430233 ubiquitin-like with PHD and ring finger domains 1
          isoform 2 [Homo sapiens]
          Length = 806

 Score = 51.2 bits (121), Expect = 3e-07
 Identities = 28/74 (37%), Positives = 46/74 (62%), Gaps = 2/74 (2%)

Query: 1  MQIFVKTLTGK-TITLE-VEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSD 58
          M I V+T+ G+ T T++ +     +E ++ KIQ+   + P  QRL + GKQ+EDG TL D
Sbjct: 14 MWIQVRTMDGRQTHTVDSLSRLTKVEELRRKIQELFHVEPGLQRLFYRGKQMEDGHTLFD 73

Query: 59 YNIQKESTLHLVLR 72
          Y ++   T+ L++R
Sbjct: 74 YEVRLNDTIQLLVR 87


>gi|11321577 2'-5'-oligoadenylate synthetase-like isoform a [Homo
           sapiens]
          Length = 514

 Score = 50.8 bits (120), Expect = 5e-07
 Identities = 26/69 (37%), Positives = 40/69 (57%)

Query: 1   MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60
           +Q+FVK   G +    + P+  I  +K +I+D++G+P  QQ+L F G+ L+D   L  Y 
Sbjct: 434 IQVFVKNPDGGSYAYAINPNSFILGLKQQIEDQQGLPKKQQQLEFQGQVLQDWLGLGIYG 493

Query: 61  IQKESTLHL 69
           IQ   TL L
Sbjct: 494 IQDSDTLIL 502


>gi|169790971 parkin isoform 2 [Homo sapiens]
          Length = 437

 Score = 50.4 bits (119), Expect = 6e-07
 Identities = 23/72 (31%), Positives = 45/72 (62%)

Query: 1  MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60
          M +FV+  +     +EV+   +I  +K  +  ++G+P DQ R+IFAGK+L +  T+ + +
Sbjct: 1  MIVFVRFNSSHGFPVEVDSDTSIFQLKEVVAKRQGVPADQLRVIFAGKELRNDWTVQNCD 60

Query: 61 IQKESTLHLVLR 72
          + ++S +H+V R
Sbjct: 61 LDQQSIVHIVQR 72


>gi|169790969 parkin isoform 1 [Homo sapiens]
          Length = 465

 Score = 50.4 bits (119), Expect = 6e-07
 Identities = 23/72 (31%), Positives = 45/72 (62%)

Query: 1  MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60
          M +FV+  +     +EV+   +I  +K  +  ++G+P DQ R+IFAGK+L +  T+ + +
Sbjct: 1  MIVFVRFNSSHGFPVEVDSDTSIFQLKEVVAKRQGVPADQLRVIFAGKELRNDWTVQNCD 60

Query: 61 IQKESTLHLVLR 72
          + ++S +H+V R
Sbjct: 61 LDQQSIVHIVQR 72


>gi|222352096 ubiquitin D [Homo sapiens]
          Length = 165

 Score = 50.4 bits (119), Expect = 6e-07
 Identities = 26/62 (41%), Positives = 38/62 (61%)

Query: 15  LEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLR 74
           L+V  S ++  VKA I+ K GI P+ Q +   GK+LEDG+ ++DY I+K + L L     
Sbjct: 104 LQVRRSSSVAQVKAMIETKTGIIPETQIVTCNGKRLEDGKMMADYGIRKGNLLFLACYCI 163

Query: 75  GG 76
           GG
Sbjct: 164 GG 165



 Score = 50.1 bits (118), Expect = 8e-07
 Identities = 22/71 (30%), Positives = 40/71 (56%)

Query: 3  IFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQ 62
          + V++     +T +  P D+++ +K  ++ K  +P   Q L+   K L+  R+LS Y I 
Sbjct: 10 VHVRSEEWDLMTFDANPYDSVKKIKEHVRSKTKVPVQDQVLLLGSKILKPRRSLSSYGID 69

Query: 63 KESTLHLVLRL 73
          KE T+HL L++
Sbjct: 70 KEKTIHLTLKV 80


>gi|44662819 ubiquitin-like 4B [Homo sapiens]
          Length = 174

 Score = 50.4 bits (119), Expect = 6e-07
 Identities = 33/128 (25%), Positives = 66/128 (51%), Gaps = 8/128 (6%)

Query: 1   MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60
           M + VK L G+  +L+V   +++  +K  +  +  +P +QQ L+F G+ LED + LSDY 
Sbjct: 1   MFLTVKLLLGQRCSLKVSGQESVATLKRLVSRRLKVPEEQQHLLFRGQLLEDDKHLSDYC 60

Query: 61  IQKESTLHLVLR-LRGGAKKRKKKSYTTPKKN-------KHKRKKVKLAVLKYYKVDENG 112
           I   ++++++++ L   A K   +  T P  +       KH   +   AVL+  + +   
Sbjct: 61  IGPNASINVIMQPLEKMALKEAHQPQTQPLWHQLGLVLAKHFEPQDAKAVLQLLRQEHEE 120

Query: 113 KISRLRRE 120
           ++ ++  E
Sbjct: 121 RLQKISLE 128


>gi|23312364 ubiquitin-like with PHD and ring finger domains 2
          [Homo sapiens]
          Length = 802

 Score = 48.9 bits (115), Expect = 2e-06
 Identities = 29/74 (39%), Positives = 45/74 (60%), Gaps = 2/74 (2%)

Query: 1  MQIFVKTLTG-KTITLE-VEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSD 58
          M I V+T+ G KT T+E V    TIE ++ ++     + P+ QRL + GKQLE+G TL D
Sbjct: 1  MWIQVRTIDGSKTCTIEDVSRKATIEELRERVWALFDVRPECQRLFYRGKQLENGYTLFD 60

Query: 59 YNIQKESTLHLVLR 72
          Y++     + L++R
Sbjct: 61 YDVGLNDIIQLLVR 74


>gi|13376439 ubiquitin domain containing 1 [Homo sapiens]
          Length = 227

 Score = 48.1 bits (113), Expect = 3e-06
 Identities = 23/67 (34%), Positives = 37/67 (55%)

Query: 5   VKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKE 64
           V+  TGK + L     DT+  +K ++  +EGI P  QR  F+GK L D   L +  IQK+
Sbjct: 153 VRLSTGKDVRLSASLPDTVGQLKRQLHAQEGIEPSWQRWFFSGKLLTDRTRLQETKIQKD 212

Query: 65  STLHLVL 71
             + +++
Sbjct: 213 FVIQVII 219


>gi|149158696 HLA-B associated transcript-3 isoform b [Homo
          sapiens]
          Length = 1126

 Score = 47.0 bits (110), Expect = 7e-06
 Identities = 25/72 (34%), Positives = 41/72 (56%), Gaps = 1/72 (1%)

Query: 1  MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60
          +++ VKTL  +T T  V     ++  K  I     IP ++QRLI+ G+ L+D + L +YN
Sbjct: 17 LEVLVKTLDSQTRTFIVGAQMNVKEFKEHIAASVSIPSEKQRLIYQGRVLQDDKKLQEYN 76

Query: 61 IQKESTLHLVLR 72
          +  +  +HLV R
Sbjct: 77 VGGK-VIHLVER 87


>gi|18375632 HLA-B associated transcript-3 isoform b [Homo
          sapiens]
          Length = 1126

 Score = 47.0 bits (110), Expect = 7e-06
 Identities = 25/72 (34%), Positives = 41/72 (56%), Gaps = 1/72 (1%)

Query: 1  MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60
          +++ VKTL  +T T  V     ++  K  I     IP ++QRLI+ G+ L+D + L +YN
Sbjct: 17 LEVLVKTLDSQTRTFIVGAQMNVKEFKEHIAASVSIPSEKQRLIYQGRVLQDDKKLQEYN 76

Query: 61 IQKESTLHLVLR 72
          +  +  +HLV R
Sbjct: 77 VGGK-VIHLVER 87


>gi|18375630 HLA-B associated transcript-3 isoform b [Homo
          sapiens]
          Length = 1126

 Score = 47.0 bits (110), Expect = 7e-06
 Identities = 25/72 (34%), Positives = 41/72 (56%), Gaps = 1/72 (1%)

Query: 1  MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60
          +++ VKTL  +T T  V     ++  K  I     IP ++QRLI+ G+ L+D + L +YN
Sbjct: 17 LEVLVKTLDSQTRTFIVGAQMNVKEFKEHIAASVSIPSEKQRLIYQGRVLQDDKKLQEYN 76

Query: 61 IQKESTLHLVLR 72
          +  +  +HLV R
Sbjct: 77 VGGK-VIHLVER 87


  Database: hs.faa
    Posted date:  Aug 4, 2009  4:42 PM
  Number of letters in database: 18,247,518
  Number of sequences in database:  37,866
  
Lambda     K      H
   0.318    0.135    0.398 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,326,115
Number of Sequences: 37866
Number of extensions: 271527
Number of successful extensions: 1372
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 67
Number of HSP's successfully gapped in prelim test: 23
Number of HSP's that attempted gapping in prelim test: 1237
Number of HSP's gapped (non-prelim): 116
length of query: 156
length of database: 18,247,518
effective HSP length: 94
effective length of query: 62
effective length of database: 14,688,114
effective search space: 910663068
effective search space used: 910663068
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 57 (26.6 bits)

Search results were obtained with NCBI BLAST and RefSeq entries.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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