Guide to the Human Genome
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Name: PUS10 Sequence: fasta or formatted (529aa) NCBI GI: 207113130
Description:

pseudouridylate synthase 10

Referenced in:

tRNA Enzymes

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             5.5         29           2
 C cysteine            2.5         13           1
 D aspartate           5.3         28           2
 E glutamate           8.9         47           3
 F phenylalanine       5.7         30           1
 G glycine             4.3         23           1
 H histidine           3.4         18           2
 I isoleucine          5.7         30           2
 K lysine              8.1         43           2
 L leucine            10.0         53           3
 M methionine          1.5          8           1
 N asparagine          4.7         25           2
 P proline             5.1         27           3
 Q glutamine           4.2         22           2
 R arginine            4.3         23           2
 S serine              6.2         33           3
 T threonine           4.2         22           1
 V valine              7.9         42           2
 W tryptophan          0.9          5           1
 Y tyrosine            1.5          8           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   pseudouridylate synthase 10 
CAGE1                 0.014   cancer antigen 1 
AMPD2                 0.011   adenosine monophosphate deaminase 2 (isoform L) isof...
AMPD2                 0.011   adenosine monophosphate deaminase 2 (isoform L) isof...
AMPD2                 0.011   adenosine monophosphate deaminase 2 (isoform L) isof...
TPR                   0.008   nuclear pore complex-associated protein TPR 
SPAG17                0.007   sperm associated antigen 17 
CUZD1                 0.007   CUB and zona pellucida-like domains 1 
FAM190B               0.006   granule cell antiserum positive 14 
C2orf39               0.006   hypothetical protein LOC92749 
CENPF                 0.006   centromere protein F 
DIP2A                 0.006   disco-interacting protein 2A isoform g 
DIP2A                 0.006   disco-interacting protein 2A isoform a 
RAD50                 0.006   RAD50 homolog isoform 2 
RAD50                 0.006   RAD50 homolog isoform 1 
DIP2A                 0.006   disco-interacting protein 2A isoform f 
DIP2A                 0.006   disco-interacting protein 2A isoform e 
DIP2A                 0.006   disco-interacting protein 2A isoform d 
DIP2A                 0.006   disco-interacting protein 2A isoform c 
DIP2A                 0.006   disco-interacting protein 2A isoform b 
HKR1                  0.006   GLI-Kruppel family member HKR1 
MYH15                 0.005   myosin, heavy polypeptide 15 
IFT74                 0.005   coiled-coil domain containing 2 isoform a 
IFT74                 0.005   coiled-coil domain containing 2 isoform a 
IFT74                 0.005   coiled-coil domain containing 2 isoform a 
ATRX                  0.005   transcriptional regulator ATRX isoform 2 
ATRX                  0.005   transcriptional regulator ATRX isoform 1 
RILPL1                0.005   Rab interacting lysosomal protein-like 1 
CCDC39                0.005   coiled-coil domain containing 39 
LEPREL1               0.005   leprecan-like 1 isoform a 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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