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Search of human proteins with 207028635
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|207028635 hypothetical protein LOC400793 isoform 1 [Homo
sapiens]
(315 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|207028635 hypothetical protein LOC400793 isoform 1 [Homo sapi... 630 0.0
gi|145977194 hypothetical protein LOC400793 isoform 2 [Homo sapi... 545 e-155
gi|55741677 SET domain containing 1A [Homo sapiens] 38 0.013
gi|195927037 DNA (cytosine-5-)-methyltransferase 1 isoform a [Ho... 37 0.017
gi|116008194 myosin light chain kinase isoform 3A [Homo sapiens] 37 0.030
gi|116008192 myosin light chain kinase isoform 1 [Homo sapiens] 37 0.030
gi|116008190 myosin light chain kinase isoform 3B [Homo sapiens] 37 0.030
gi|116008188 myosin light chain kinase isoform 2 [Homo sapiens] 37 0.030
gi|123173757 RAVER1 [Homo sapiens] 36 0.051
gi|42490753 TEA domain family member 3 [Homo sapiens] 36 0.051
gi|148596988 mucoepidermoid carcinoma translocated 1 isoform 3 [... 35 0.066
gi|148596965 mucoepidermoid carcinoma translocated 1 isoform 1 [... 35 0.066
gi|46852161 methyl-CpG binding domain protein 6 [Homo sapiens] 35 0.066
gi|187960059 syndecan 3 [Homo sapiens] 35 0.11
gi|13491168 pumilio homolog 2 [Homo sapiens] 34 0.15
gi|28274705 family with sequence similarity 9, member A [Homo sa... 34 0.15
gi|56788370 pleckstrin and Sec7 domain containing 4 [Homo sapiens] 34 0.15
gi|38176300 nestin [Homo sapiens] 33 0.25
gi|169207217 PREDICTED: zinc finger homeobox 2 [Homo sapiens] 33 0.25
gi|169207592 PREDICTED: zinc finger homeobox 2 [Homo sapiens] 33 0.25
gi|169207014 PREDICTED: zinc finger homeobox 2 [Homo sapiens] 33 0.25
gi|237757312 synaptojanin 1 isoform c [Homo sapiens] 33 0.33
gi|237757310 synaptojanin 1 isoform a [Homo sapiens] 33 0.33
gi|237757308 synaptojanin 1 isoform b [Homo sapiens] 33 0.33
gi|237757326 synaptojanin 1 isoform d [Homo sapiens] 33 0.33
gi|40805854 isthmin 2 homolog isoform 3 [Homo sapiens] 33 0.43
gi|40805858 isthmin 2 homolog isoform 1 [Homo sapiens] 33 0.43
gi|41349446 stromal interaction molecule 2 [Homo sapiens] 33 0.43
gi|4503351 DNA (cytosine-5-)-methyltransferase 1 isoform b [Homo... 32 0.56
gi|223634475 golgi autoantigen, golgin subfamily a, 6D [Homo sap... 32 0.73
>gi|207028635 hypothetical protein LOC400793 isoform 1 [Homo
sapiens]
Length = 315
Score = 630 bits (1624), Expect = 0.0
Identities = 315/315 (100%), Positives = 315/315 (100%)
Query: 1 MLVLVAQAGGDTLKVTGHYVKCVFLLFVSHLLSEPLSRTVDHGMFENLNTALTPKLQASR 60
MLVLVAQAGGDTLKVTGHYVKCVFLLFVSHLLSEPLSRTVDHGMFENLNTALTPKLQASR
Sbjct: 1 MLVLVAQAGGDTLKVTGHYVKCVFLLFVSHLLSEPLSRTVDHGMFENLNTALTPKLQASR 60
Query: 61 SFPHLSKPVAPGSAPLGSGEPGGPGLWVGSSQHLKNLGKAMGAKVNDFLRRKEPSSLGSV 120
SFPHLSKPVAPGSAPLGSGEPGGPGLWVGSSQHLKNLGKAMGAKVNDFLRRKEPSSLGSV
Sbjct: 61 SFPHLSKPVAPGSAPLGSGEPGGPGLWVGSSQHLKNLGKAMGAKVNDFLRRKEPSSLGSV 120
Query: 121 GVTEINKTAGAQLASGTDAAPEAWLEDERSVLQETFPRLDPPPPITRKRTPRALKTTQDM 180
GVTEINKTAGAQLASGTDAAPEAWLEDERSVLQETFPRLDPPPPITRKRTPRALKTTQDM
Sbjct: 121 GVTEINKTAGAQLASGTDAAPEAWLEDERSVLQETFPRLDPPPPITRKRTPRALKTTQDM 180
Query: 181 LISSQPVLSSLEYGTEPSPGQAQDSAPTAQPDVPADASQPEATMEREERGKVLPNGEVSL 240
LISSQPVLSSLEYGTEPSPGQAQDSAPTAQPDVPADASQPEATMEREERGKVLPNGEVSL
Sbjct: 181 LISSQPVLSSLEYGTEPSPGQAQDSAPTAQPDVPADASQPEATMEREERGKVLPNGEVSL 240
Query: 241 SVPDLIHKDSQDESKLKMTECRRASSPSLIERNGFKLSLSPISLAESWEDGSPPPQARTS 300
SVPDLIHKDSQDESKLKMTECRRASSPSLIERNGFKLSLSPISLAESWEDGSPPPQARTS
Sbjct: 241 SVPDLIHKDSQDESKLKMTECRRASSPSLIERNGFKLSLSPISLAESWEDGSPPPQARTS 300
Query: 301 SLDNEGPHPDLLSFE 315
SLDNEGPHPDLLSFE
Sbjct: 301 SLDNEGPHPDLLSFE 315
>gi|145977194 hypothetical protein LOC400793 isoform 2 [Homo
sapiens]
Length = 272
Score = 545 bits (1404), Expect = e-155
Identities = 272/272 (100%), Positives = 272/272 (100%)
Query: 44 MFENLNTALTPKLQASRSFPHLSKPVAPGSAPLGSGEPGGPGLWVGSSQHLKNLGKAMGA 103
MFENLNTALTPKLQASRSFPHLSKPVAPGSAPLGSGEPGGPGLWVGSSQHLKNLGKAMGA
Sbjct: 1 MFENLNTALTPKLQASRSFPHLSKPVAPGSAPLGSGEPGGPGLWVGSSQHLKNLGKAMGA 60
Query: 104 KVNDFLRRKEPSSLGSVGVTEINKTAGAQLASGTDAAPEAWLEDERSVLQETFPRLDPPP 163
KVNDFLRRKEPSSLGSVGVTEINKTAGAQLASGTDAAPEAWLEDERSVLQETFPRLDPPP
Sbjct: 61 KVNDFLRRKEPSSLGSVGVTEINKTAGAQLASGTDAAPEAWLEDERSVLQETFPRLDPPP 120
Query: 164 PITRKRTPRALKTTQDMLISSQPVLSSLEYGTEPSPGQAQDSAPTAQPDVPADASQPEAT 223
PITRKRTPRALKTTQDMLISSQPVLSSLEYGTEPSPGQAQDSAPTAQPDVPADASQPEAT
Sbjct: 121 PITRKRTPRALKTTQDMLISSQPVLSSLEYGTEPSPGQAQDSAPTAQPDVPADASQPEAT 180
Query: 224 MEREERGKVLPNGEVSLSVPDLIHKDSQDESKLKMTECRRASSPSLIERNGFKLSLSPIS 283
MEREERGKVLPNGEVSLSVPDLIHKDSQDESKLKMTECRRASSPSLIERNGFKLSLSPIS
Sbjct: 181 MEREERGKVLPNGEVSLSVPDLIHKDSQDESKLKMTECRRASSPSLIERNGFKLSLSPIS 240
Query: 284 LAESWEDGSPPPQARTSSLDNEGPHPDLLSFE 315
LAESWEDGSPPPQARTSSLDNEGPHPDLLSFE
Sbjct: 241 LAESWEDGSPPPQARTSSLDNEGPHPDLLSFE 272
>gi|55741677 SET domain containing 1A [Homo sapiens]
Length = 1707
Score = 37.7 bits (86), Expect = 0.013
Identities = 45/202 (22%), Positives = 76/202 (37%), Gaps = 22/202 (10%)
Query: 106 NDFLRRKEPSSLGSVGVTEINKTAGAQLASGTDAAPEAWLEDERSVLQETFPRLDPPPPI 165
ND E SS S + + ++ + +S ++++ E E+ER P PPP
Sbjct: 1027 NDSTSDSESSSSSSSSSSSSSSSSSSSSSSSSESSSEDEEEEERPA---ALPSASPPPRE 1083
Query: 166 TRKRTPRALKTTQDMLISSQPVLSSLEYGTEPS--PGQAQDSAPTAQPDVPADASQPEAT 223
TP ++ ++ PV E P+ G ++S P+A P + P A
Sbjct: 1084 VPVPTPAPVEVPVPERVAGSPVTPLPEQEASPARPAGPTEESPPSAPLRPPEPPAGPPAP 1143
Query: 224 MEREERGKVLP----------NGEVSLSVPDLIHKD-----SQDESKLKMTECRRASSPS 268
R + P VS S +++ + ++K R+A P
Sbjct: 1144 APRPDERPSSPIPLLPPPKKRRKTVSFSAIEVVPAPEPPPATPPQAKFPGPASRKA--PR 1201
Query: 269 LIERNGFKLSLSPISLAESWED 290
+ER L L SL +SW +
Sbjct: 1202 GVERTIRNLPLDHASLVKSWPE 1223
>gi|195927037 DNA (cytosine-5-)-methyltransferase 1 isoform a [Homo
sapiens]
Length = 1632
Score = 37.4 bits (85), Expect = 0.017
Identities = 39/153 (25%), Positives = 63/153 (41%), Gaps = 21/153 (13%)
Query: 121 GVTEINKTAGAQLASGTDAAPEA---WLEDERSVLQETFPRLDPPPPITRKRTPRALKTT 177
G N+ +L +G A EA + D S PP P+++ RTPR K+
Sbjct: 95 GAHAYNREVNGRLENGNQARSEARRVGMADANS----------PPKPLSKPRTPRRSKSD 144
Query: 178 QDMLISSQPVLSSLE---YGTEPSPGQAQDSAPTAQPDVPADASQPEATMEREERGKVLP 234
+ S P S+ + EPSP T Q + + ++ A + +E +
Sbjct: 145 GEAKRSRDPPASASQVTGIRAEPSPSPRITRKSTRQTTITSHFAKGPAKRKPQEESERAK 204
Query: 235 NGEVSLSVPDLIHKDSQDESKLKMTECRRASSP 267
+ E S+ D KD QDE + ++T R + P
Sbjct: 205 SDE-SIKEED---KD-QDEKRRRVTSRERVARP 232
>gi|116008194 myosin light chain kinase isoform 3A [Homo sapiens]
Length = 1863
Score = 36.6 bits (83), Expect = 0.030
Identities = 54/223 (24%), Positives = 83/223 (37%), Gaps = 45/223 (20%)
Query: 54 PKLQASRSFPHLSKPVAPGSAPLGSGEPGGPGLWVGS---SQHLKNLG--------KAMG 102
P S S L+ S PL + +P GP VG+ ++ LK +G K MG
Sbjct: 992 PAENGSSSAETLNAKAVESSKPLSNAQPSGPLKPVGNAKPAETLKPMGNAKPAETLKPMG 1051
Query: 103 -AKVNDFLRRKEPSSL------------GSVGVTEINKTAGAQLASGTDAAPEAWLED-- 147
AK ++ L+ L G G T+ K + +Q GT A + L+D
Sbjct: 1052 NAKPDENLKSASKEELKKDVKNDVNCKRGHAGTTDNEKRSESQ---GTAPAFKQKLQDVH 1108
Query: 148 ---ERSVLQETFPRLDPPPPITRKRTPRALKTTQDMLISSQPVLSSLEYG---------- 194
+ +L + DPP I + LKTT+ +++S + L S+
Sbjct: 1109 VAEGKKLLLQCQVSSDPPATIIWTLNGKTLKTTKFIILSQEGSLCSVSIEKALPEDRGLY 1168
Query: 195 ---TEPSPGQAQDSAPTAQPDVPADASQPEATMEREERGKVLP 234
+ GQA+ S D PA + M+ LP
Sbjct: 1169 KCVAKNDAGQAECSCQVTVDDAPASENTKAPEMKSRRPKSSLP 1211
>gi|116008192 myosin light chain kinase isoform 1 [Homo sapiens]
Length = 1914
Score = 36.6 bits (83), Expect = 0.030
Identities = 54/223 (24%), Positives = 83/223 (37%), Gaps = 45/223 (20%)
Query: 54 PKLQASRSFPHLSKPVAPGSAPLGSGEPGGPGLWVGS---SQHLKNLG--------KAMG 102
P S S L+ S PL + +P GP VG+ ++ LK +G K MG
Sbjct: 992 PAENGSSSAETLNAKAVESSKPLSNAQPSGPLKPVGNAKPAETLKPMGNAKPAETLKPMG 1051
Query: 103 -AKVNDFLRRKEPSSL------------GSVGVTEINKTAGAQLASGTDAAPEAWLED-- 147
AK ++ L+ L G G T+ K + +Q GT A + L+D
Sbjct: 1052 NAKPDENLKSASKEELKKDVKNDVNCKRGHAGTTDNEKRSESQ---GTAPAFKQKLQDVH 1108
Query: 148 ---ERSVLQETFPRLDPPPPITRKRTPRALKTTQDMLISSQPVLSSLEYG---------- 194
+ +L + DPP I + LKTT+ +++S + L S+
Sbjct: 1109 VAEGKKLLLQCQVSSDPPATIIWTLNGKTLKTTKFIILSQEGSLCSVSIEKALPEDRGLY 1168
Query: 195 ---TEPSPGQAQDSAPTAQPDVPADASQPEATMEREERGKVLP 234
+ GQA+ S D PA + M+ LP
Sbjct: 1169 KCVAKNDAGQAECSCQVTVDDAPASENTKAPEMKSRRPKSSLP 1211
>gi|116008190 myosin light chain kinase isoform 3B [Homo sapiens]
Length = 1794
Score = 36.6 bits (83), Expect = 0.030
Identities = 54/223 (24%), Positives = 83/223 (37%), Gaps = 45/223 (20%)
Query: 54 PKLQASRSFPHLSKPVAPGSAPLGSGEPGGPGLWVGS---SQHLKNLG--------KAMG 102
P S S L+ S PL + +P GP VG+ ++ LK +G K MG
Sbjct: 923 PAENGSSSAETLNAKAVESSKPLSNAQPSGPLKPVGNAKPAETLKPMGNAKPAETLKPMG 982
Query: 103 -AKVNDFLRRKEPSSL------------GSVGVTEINKTAGAQLASGTDAAPEAWLED-- 147
AK ++ L+ L G G T+ K + +Q GT A + L+D
Sbjct: 983 NAKPDENLKSASKEELKKDVKNDVNCKRGHAGTTDNEKRSESQ---GTAPAFKQKLQDVH 1039
Query: 148 ---ERSVLQETFPRLDPPPPITRKRTPRALKTTQDMLISSQPVLSSLEYG---------- 194
+ +L + DPP I + LKTT+ +++S + L S+
Sbjct: 1040 VAEGKKLLLQCQVSSDPPATIIWTLNGKTLKTTKFIILSQEGSLCSVSIEKALPEDRGLY 1099
Query: 195 ---TEPSPGQAQDSAPTAQPDVPADASQPEATMEREERGKVLP 234
+ GQA+ S D PA + M+ LP
Sbjct: 1100 KCVAKNDAGQAECSCQVTVDDAPASENTKAPEMKSRRPKSSLP 1142
>gi|116008188 myosin light chain kinase isoform 2 [Homo sapiens]
Length = 1845
Score = 36.6 bits (83), Expect = 0.030
Identities = 54/223 (24%), Positives = 83/223 (37%), Gaps = 45/223 (20%)
Query: 54 PKLQASRSFPHLSKPVAPGSAPLGSGEPGGPGLWVGS---SQHLKNLG--------KAMG 102
P S S L+ S PL + +P GP VG+ ++ LK +G K MG
Sbjct: 923 PAENGSSSAETLNAKAVESSKPLSNAQPSGPLKPVGNAKPAETLKPMGNAKPAETLKPMG 982
Query: 103 -AKVNDFLRRKEPSSL------------GSVGVTEINKTAGAQLASGTDAAPEAWLED-- 147
AK ++ L+ L G G T+ K + +Q GT A + L+D
Sbjct: 983 NAKPDENLKSASKEELKKDVKNDVNCKRGHAGTTDNEKRSESQ---GTAPAFKQKLQDVH 1039
Query: 148 ---ERSVLQETFPRLDPPPPITRKRTPRALKTTQDMLISSQPVLSSLEYG---------- 194
+ +L + DPP I + LKTT+ +++S + L S+
Sbjct: 1040 VAEGKKLLLQCQVSSDPPATIIWTLNGKTLKTTKFIILSQEGSLCSVSIEKALPEDRGLY 1099
Query: 195 ---TEPSPGQAQDSAPTAQPDVPADASQPEATMEREERGKVLP 234
+ GQA+ S D PA + M+ LP
Sbjct: 1100 KCVAKNDAGQAECSCQVTVDDAPASENTKAPEMKSRRPKSSLP 1142
>gi|123173757 RAVER1 [Homo sapiens]
Length = 756
Score = 35.8 bits (81), Expect = 0.051
Identities = 30/70 (42%), Positives = 35/70 (50%), Gaps = 6/70 (8%)
Query: 53 TPKLQASRSFPHLSKPVAPGSAPLGSGEPGGPGLWVGSSQHLKNLGKAMGAKVNDF---L 109
T LQA HLSK + GS+PLGSGE G GL G + H L +G + F L
Sbjct: 666 TSGLQAGLKQSHLSKAI--GSSPLGSGE-GLLGLSPGPNGHSHLLKTPLGGQKRSFAHLL 722
Query: 110 RRKEPSSLGS 119
EPS GS
Sbjct: 723 PSPEPSPEGS 732
>gi|42490753 TEA domain family member 3 [Homo sapiens]
Length = 435
Score = 35.8 bits (81), Expect = 0.051
Identities = 31/93 (33%), Positives = 40/93 (43%), Gaps = 16/93 (17%)
Query: 150 SVLQETFPRLDPPPPITRKRTPRALKTTQDMLISSQPVLSSLEYGTEPSPGQAQDSAPTA 209
SVLQ F PP P+ P+A+ +T SS P+L PG +QD P A
Sbjct: 138 SVLQNKF---SPPSPL-----PQAVFSTSSRFWSSPPLLGQ-------QPGPSQDIKPFA 182
Query: 210 QPDVPADASQPEATMEREERGKVLPNGEVSLSV 242
QP P P T+ E LP+ S+ V
Sbjct: 183 QPAYPIQPPLP-PTLSSYEPLAPLPSAAASVPV 214
>gi|148596988 mucoepidermoid carcinoma translocated 1 isoform 3
[Homo sapiens]
Length = 650
Score = 35.4 bits (80), Expect = 0.066
Identities = 40/161 (24%), Positives = 61/161 (37%), Gaps = 17/161 (10%)
Query: 153 QETFPRLDPPPPITRKRTPRALKTTQDMLISSQPVLSSLEYGTEPSPGQAQDSAP----T 208
Q+ P L P PIT+ AL Q + P + G++ P Q Q P +
Sbjct: 339 QQASPTLSPLSPITQAVAMDALSLEQQL-----PYAFFTQAGSQQPPPQPQPPPPPPPAS 393
Query: 209 AQPDVPADASQPEATMEREERGKVLPNGEVSLSVPDLIHKDSQDESKLKMTECRRASSPS 268
QP P P+A + G +LP+ ++ P S L + PS
Sbjct: 394 QQPPPP---PPPQAPVRLPPGGPLLPSASLTRG-PQPPPLAVTVPSSLPQSPPENPGQPS 449
Query: 269 LIERNGFKLSLSPISLAESWEDGSPPPQARTSSLDNEGPHP 309
+ G ++ +P GSP Q+ TS + N+G P
Sbjct: 450 M----GIDIASAPALQQYRTSAGSPANQSPTSPVSNQGFSP 486
>gi|148596965 mucoepidermoid carcinoma translocated 1 isoform 1
[Homo sapiens]
Length = 634
Score = 35.4 bits (80), Expect = 0.066
Identities = 40/161 (24%), Positives = 61/161 (37%), Gaps = 17/161 (10%)
Query: 153 QETFPRLDPPPPITRKRTPRALKTTQDMLISSQPVLSSLEYGTEPSPGQAQDSAP----T 208
Q+ P L P PIT+ AL Q + P + G++ P Q Q P +
Sbjct: 323 QQASPTLSPLSPITQAVAMDALSLEQQL-----PYAFFTQAGSQQPPPQPQPPPPPPPAS 377
Query: 209 AQPDVPADASQPEATMEREERGKVLPNGEVSLSVPDLIHKDSQDESKLKMTECRRASSPS 268
QP P P+A + G +LP+ ++ P S L + PS
Sbjct: 378 QQPPPP---PPPQAPVRLPPGGPLLPSASLTRG-PQPPPLAVTVPSSLPQSPPENPGQPS 433
Query: 269 LIERNGFKLSLSPISLAESWEDGSPPPQARTSSLDNEGPHP 309
+ G ++ +P GSP Q+ TS + N+G P
Sbjct: 434 M----GIDIASAPALQQYRTSAGSPANQSPTSPVSNQGFSP 470
>gi|46852161 methyl-CpG binding domain protein 6 [Homo sapiens]
Length = 1003
Score = 35.4 bits (80), Expect = 0.066
Identities = 47/157 (29%), Positives = 61/157 (38%), Gaps = 12/157 (7%)
Query: 63 PHLSKPVAPGSAPLGSGEPGGPGLWVGS--SQHLKNLGKAMGAKVNDFLRRKEPSSLGSV 120
P L P PG PL GEP GP L V S +L A ++ L P L ++
Sbjct: 575 PLLPPPGGPGP-PLAPGEPEGPSLLVASLLPPPPSDLLPPPSAPPSNLLASFLP--LLAL 631
Query: 121 GVTEINKTAGAQLASGTDAAPEAWLEDERSVLQETFPRLDPPPPITRKRTPRALKTTQDM 180
G T + A+ A G P + L D +L FP L PP + + L T D
Sbjct: 632 GPTAGDGEGSAEGAGGPSGEPFSGLGDLSPLL---FPPLSAPPTLIALNS-ALLAATLDP 687
Query: 181 LISSQPVLSSLEYGTEPSPGQAQDSAPTAQPDVPADA 217
+ P L + P PG S TA D A +
Sbjct: 688 PSGTPPQPCVL---SAPQPGPPTSSVTTATTDPGASS 721
>gi|187960059 syndecan 3 [Homo sapiens]
Length = 442
Score = 34.7 bits (78), Expect = 0.11
Identities = 56/254 (22%), Positives = 91/254 (35%), Gaps = 12/254 (4%)
Query: 63 PHLSKPVAPGSAPLGSGE-PGGPGLWVGSSQHLKNLGKAMGAKVNDFLRRKEPSSLGSVG 121
PH + A G+ PG GL + L G+A GA+ + P L G
Sbjct: 6 PHRAGAAHGAGAGAGAAAGPGARGLLLPPLLLLLLAGRAAGAQRWRSENFERPVDLEGSG 65
Query: 122 VTEINKTAGAQLASGTDAAPEAWLEDERSVLQETFPRLDPPPPITRKRTPRALKTTQDML 181
+ + +L + + E E + ET R P + TP L TT
Sbjct: 66 --DDDSFPDDELDDLYSGSGSGYFEQESGI--ETAMRFSPDVALAVSTTPAVLPTT---- 117
Query: 182 ISSQPVLSSLEYGTEPSPGQAQDSAPTAQPDVPADASQPEATMEREERGKVLPN-GEVSL 240
+ QPV + E P ++P +VP + SQ T+ + G+ ++
Sbjct: 118 -NIQPVGTPFEELPSERPTLEPATSPLVVTEVPEEPSQRATTVSTTMATTAATSTGDPTV 176
Query: 241 S-VPDLIHKDSQDESKLKMTECRRASSPSLIERNGFKLSLSPISLAESWEDGSPPPQART 299
+ VP + + A + R L L+ ++ A + +P P
Sbjct: 177 ATVPATVATATPSTPAAPPFTATTAVIRTTGVRRLLPLPLTTVATARATTPEAPSPPTTA 236
Query: 300 SSLDNEGPHPDLLS 313
+ LD E P P L+S
Sbjct: 237 AVLDTEAPTPRLVS 250
>gi|13491168 pumilio homolog 2 [Homo sapiens]
Length = 1064
Score = 34.3 bits (77), Expect = 0.15
Identities = 26/86 (30%), Positives = 41/86 (47%), Gaps = 8/86 (9%)
Query: 49 NTALTPKLQASRSFPHLSKPVAPGSAPLGSGEPGGPGLWVGSSQHLKNLGKAMGAKVNDF 108
+++LT Q+S F H P PGS LG G G +GS+ L G ++G+ +
Sbjct: 526 SSSLTNSSQSSSLFSH--GPGQPGSTSLGFGSGNSLGAAIGSA--LSGFGSSVGSSASSS 581
Query: 109 LRRKEPSSLGSVGVTEINKTAGAQLA 134
R+E S S ++ K + + LA
Sbjct: 582 ATRRESLSTSS----DLYKRSSSSLA 603
>gi|28274705 family with sequence similarity 9, member A [Homo
sapiens]
Length = 332
Score = 34.3 bits (77), Expect = 0.15
Identities = 30/112 (26%), Positives = 48/112 (42%), Gaps = 7/112 (6%)
Query: 120 VGVTEINKTAGAQLASGTDAAPEAWLEDERSVLQETFPRLDPPPPITRKRTPRALKTTQD 179
VG K A AQL + AA A E S + FP P+ RKR+ +A K +
Sbjct: 4 VGRKRSRKAAKAQLEAQVTAAQGA--TKEGSGIASNFPGQPTMEPVGRKRSRKAAKAQLE 61
Query: 180 MLISSQPVLSSLEYGTEPSPGQAQDSAP---TAQPDVPADASQPEATMEREE 228
+ + P + G +P + ++ P T + DV + + E E++E
Sbjct: 62 AQVRAAP--AKKHTGKDPVRDECEERNPFTETREEDVTDEHGEREPFAEKDE 111
>gi|56788370 pleckstrin and Sec7 domain containing 4 [Homo sapiens]
Length = 1056
Score = 34.3 bits (77), Expect = 0.15
Identities = 31/137 (22%), Positives = 48/137 (35%), Gaps = 21/137 (15%)
Query: 196 EPSPGQAQDSAPTAQPDVPADASQPEATMEREERGKVLPNGEVSLSVPDLIHKDSQDESK 255
EPS +++ P +P PA + + ++ G +LP + S L+ D + S
Sbjct: 445 EPSSPESESRGPGPRPS-PASSQEGSPQLQHHSSG-ILPKWTLDASQSSLLETDGEQPSS 502
Query: 256 LKMTECRRASSPSL-------------------IERNGFKLSLSPISLAESWEDGSPPPQ 296
LK E A P I + + SW GSP PQ
Sbjct: 503 LKKKEAGEAPKPGEEVKSEGTARPAETGDVQPDIHLTSAEHENLRTPMNSSWLPGSPMPQ 562
Query: 297 ARTSSLDNEGPHPDLLS 313
A++ P D L+
Sbjct: 563 AQSPEEGQRPPAGDKLA 579
>gi|38176300 nestin [Homo sapiens]
Length = 1621
Score = 33.5 bits (75), Expect = 0.25
Identities = 33/124 (26%), Positives = 52/124 (41%), Gaps = 10/124 (8%)
Query: 192 EYGTEPSPGQAQDSAPTAQPDVPADASQPEATMEREERGKVLPNGEVSLSVP--DLIHKD 249
E G E Q + P A P + + +RG+ L + VS+SVP D +
Sbjct: 1417 ESGEEGEEDQEEGREPGAGRWGPGSSVGSLQALSSSQRGEFLESDSVSVSVPWDDSLRGA 1476
Query: 250 SQDESKLKM-TECRRASSPSLIERNGFKLSLSPISLAESWEDGSPPPQARTSSLDNEGPH 308
K + TE + ++ PS G + P+SL ED P P S +++ GP
Sbjct: 1477 VAGAPKTALETESQDSAEPS-----GSEEESDPVSLER--EDKVPGPLEIPSGMEDAGPG 1529
Query: 309 PDLL 312
D++
Sbjct: 1530 ADII 1533
>gi|169207217 PREDICTED: zinc finger homeobox 2 [Homo sapiens]
Length = 2790
Score = 33.5 bits (75), Expect = 0.25
Identities = 20/50 (40%), Positives = 27/50 (54%), Gaps = 4/50 (8%)
Query: 185 QPVLSSLEYGTEPS--PGQAQDSAPTA--QPDVPADASQPEATMEREERG 230
+P L+S+E +PS PGQ AP+ +PD A+ P TM EE G
Sbjct: 1321 EPPLASVEVPDKPSGSPGQPPSPAPSPVPEPDAQAEDVAPPPTMAEEEEG 1370
>gi|169207592 PREDICTED: zinc finger homeobox 2 [Homo sapiens]
Length = 2706
Score = 33.5 bits (75), Expect = 0.25
Identities = 20/50 (40%), Positives = 27/50 (54%), Gaps = 4/50 (8%)
Query: 185 QPVLSSLEYGTEPS--PGQAQDSAPTA--QPDVPADASQPEATMEREERG 230
+P L+S+E +PS PGQ AP+ +PD A+ P TM EE G
Sbjct: 1237 EPPLASVEVPDKPSGSPGQPPSPAPSPVPEPDAQAEDVAPPPTMAEEEEG 1286
>gi|169207014 PREDICTED: zinc finger homeobox 2 [Homo sapiens]
Length = 2706
Score = 33.5 bits (75), Expect = 0.25
Identities = 20/50 (40%), Positives = 27/50 (54%), Gaps = 4/50 (8%)
Query: 185 QPVLSSLEYGTEPS--PGQAQDSAPTA--QPDVPADASQPEATMEREERG 230
+P L+S+E +PS PGQ AP+ +PD A+ P TM EE G
Sbjct: 1237 EPPLASVEVPDKPSGSPGQPPSPAPSPVPEPDAQAEDVAPPPTMAEEEEG 1286
>gi|237757312 synaptojanin 1 isoform c [Homo sapiens]
Length = 1295
Score = 33.1 bits (74), Expect = 0.33
Identities = 32/150 (21%), Positives = 57/150 (38%), Gaps = 14/150 (9%)
Query: 90 SSQHLKNLGKAMGAKVNDFLRR-KEPSSLGSVGVTEINKTAGAQLASGTDAAP----EAW 144
+ + L N + K D+++ +E SL + + + T+ L + A E
Sbjct: 955 NGKELLNRTITIALKSPDWIKNLEEEMSLEKISIALPSSTSSTLLGEDAEVAADFDMEGD 1014
Query: 145 LEDERSVLQETFPR---------LDPPPPITRKRTPRALKTTQDMLISSQPVLSSLEYGT 195
++D + ++E P+ L P + + +P T + + S P+ S
Sbjct: 1015 VDDYSAEVEELLPQHLQPSSSSGLGTSPSSSPRTSPCQSPTISEGPVPSLPIRPSRAPSR 1074
Query: 196 EPSPGQAQDSAPTAQPDVPADASQPEATME 225
P P AQ S AQP P P +E
Sbjct: 1075 TPGPPSAQSSPIDAQPATPLPQKDPAQPLE 1104
>gi|237757310 synaptojanin 1 isoform a [Homo sapiens]
Length = 1612
Score = 33.1 bits (74), Expect = 0.33
Identities = 32/150 (21%), Positives = 57/150 (38%), Gaps = 14/150 (9%)
Query: 90 SSQHLKNLGKAMGAKVNDFLRR-KEPSSLGSVGVTEINKTAGAQLASGTDAAP----EAW 144
+ + L N + K D+++ +E SL + + + T+ L + A E
Sbjct: 994 NGKELLNRTITIALKSPDWIKNLEEEMSLEKISIALPSSTSSTLLGEDAEVAADFDMEGD 1053
Query: 145 LEDERSVLQETFPR---------LDPPPPITRKRTPRALKTTQDMLISSQPVLSSLEYGT 195
++D + ++E P+ L P + + +P T + + S P+ S
Sbjct: 1054 VDDYSAEVEELLPQHLQPSSSSGLGTSPSSSPRTSPCQSPTISEGPVPSLPIRPSRAPSR 1113
Query: 196 EPSPGQAQDSAPTAQPDVPADASQPEATME 225
P P AQ S AQP P P +E
Sbjct: 1114 TPGPPSAQSSPIDAQPATPLPQKDPAQPLE 1143
>gi|237757308 synaptojanin 1 isoform b [Homo sapiens]
Length = 1350
Score = 33.1 bits (74), Expect = 0.33
Identities = 32/150 (21%), Positives = 57/150 (38%), Gaps = 14/150 (9%)
Query: 90 SSQHLKNLGKAMGAKVNDFLRR-KEPSSLGSVGVTEINKTAGAQLASGTDAAP----EAW 144
+ + L N + K D+++ +E SL + + + T+ L + A E
Sbjct: 994 NGKELLNRTITIALKSPDWIKNLEEEMSLEKISIALPSSTSSTLLGEDAEVAADFDMEGD 1053
Query: 145 LEDERSVLQETFPR---------LDPPPPITRKRTPRALKTTQDMLISSQPVLSSLEYGT 195
++D + ++E P+ L P + + +P T + + S P+ S
Sbjct: 1054 VDDYSAEVEELLPQHLQPSSSSGLGTSPSSSPRTSPCQSPTISEGPVPSLPIRPSRAPSR 1113
Query: 196 EPSPGQAQDSAPTAQPDVPADASQPEATME 225
P P AQ S AQP P P +E
Sbjct: 1114 TPGPPSAQSSPIDAQPATPLPQKDPAQPLE 1143
>gi|237757326 synaptojanin 1 isoform d [Homo sapiens]
Length = 1526
Score = 33.1 bits (74), Expect = 0.33
Identities = 32/150 (21%), Positives = 57/150 (38%), Gaps = 14/150 (9%)
Query: 90 SSQHLKNLGKAMGAKVNDFLRR-KEPSSLGSVGVTEINKTAGAQLASGTDAAP----EAW 144
+ + L N + K D+++ +E SL + + + T+ L + A E
Sbjct: 950 NGKELLNRTITIALKSPDWIKNLEEEMSLEKISIALPSSTSSTLLGEDAEVAADFDMEGD 1009
Query: 145 LEDERSVLQETFPR---------LDPPPPITRKRTPRALKTTQDMLISSQPVLSSLEYGT 195
++D + ++E P+ L P + + +P T + + S P+ S
Sbjct: 1010 VDDYSAEVEELLPQHLQPSSSSGLGTSPSSSPRTSPCQSPTISEGPVPSLPIRPSRAPSR 1069
Query: 196 EPSPGQAQDSAPTAQPDVPADASQPEATME 225
P P AQ S AQP P P +E
Sbjct: 1070 TPGPPSAQSSPIDAQPATPLPQKDPAQPLE 1099
>gi|40805854 isthmin 2 homolog isoform 3 [Homo sapiens]
Length = 292
Score = 32.7 bits (73), Expect = 0.43
Identities = 23/89 (25%), Positives = 35/89 (39%)
Query: 146 EDERSVLQETFPRLDPPPPITRKRTPRALKTTQDMLISSQPVLSSLEYGTEPSPGQAQDS 205
E+E +L T + +P T A T + P ++ L + PG A +
Sbjct: 60 EEEAPLLPRTHLQAEPHQHGCWTVTEPAAMTPGNATPPRTPEVTPLRLELQKLPGLANTT 119
Query: 206 APTAQPDVPADASQPEATMEREERGKVLP 234
T PD A AS + EE ++LP
Sbjct: 120 LSTPNPDTQASASPDPRPLREEEEARLLP 148
>gi|40805858 isthmin 2 homolog isoform 1 [Homo sapiens]
Length = 571
Score = 32.7 bits (73), Expect = 0.43
Identities = 23/89 (25%), Positives = 35/89 (39%)
Query: 146 EDERSVLQETFPRLDPPPPITRKRTPRALKTTQDMLISSQPVLSSLEYGTEPSPGQAQDS 205
E+E +L T + +P T A T + P ++ L + PG A +
Sbjct: 60 EEEAPLLPRTHLQAEPHQHGCWTVTEPAAMTPGNATPPRTPEVTPLRLELQKLPGLANTT 119
Query: 206 APTAQPDVPADASQPEATMEREERGKVLP 234
T PD A AS + EE ++LP
Sbjct: 120 LSTPNPDTQASASPDPRPLREEEEARLLP 148
>gi|41349446 stromal interaction molecule 2 [Homo sapiens]
Length = 833
Score = 32.7 bits (73), Expect = 0.43
Identities = 38/162 (23%), Positives = 66/162 (40%), Gaps = 17/162 (10%)
Query: 145 LEDERSVLQETFPRLDPPPPITRKRTPRALKTTQDMLISS-QPVLSSLE-YGTEPS---- 198
L+++ + FP PP + R+ ++ + ++ SS QP + L + PS
Sbjct: 571 LDEDTPPIVSQFPGTMAKPPGSLARSSSLCRSRRSIVPSSPQPQRAQLAPHAPHPSHPRH 630
Query: 199 ---PGQAQDSAPTAQPDVPADASQPEATMEREERGKVLPNGEVSLSVPDLIHKDSQDESK 255
P S P+ PD+ + +S P EE + + E VPD + +
Sbjct: 631 PHHPQHTPHSLPSPDPDILSVSSCPALYRNEEEEEAIYFSAEKQWEVPD----TASECDS 686
Query: 256 LKMTECRRASSPSLIE----RNGFKLSLSPISLAESWEDGSP 293
L + R+ S P +E + K+S +SL +S SP
Sbjct: 687 LNSSIGRKQSPPLSLEIYQTLSPRKISRDEVSLEDSSRGDSP 728
>gi|4503351 DNA (cytosine-5-)-methyltransferase 1 isoform b [Homo
sapiens]
Length = 1616
Score = 32.3 bits (72), Expect = 0.56
Identities = 38/150 (25%), Positives = 58/150 (38%), Gaps = 31/150 (20%)
Query: 121 GVTEINKTAGAQLASGTDAAPEA---WLEDERSVLQETFPRLDPPPPITRKRTPRALKTT 177
G N+ +L +G A EA + D S PP P+++ RTPR K
Sbjct: 95 GAHAYNREVNGRLENGNQARSEARRVGMADANS----------PPKPLSKPRTPRRSK-- 142
Query: 178 QDMLISSQPVLSSLEYGTEPSPGQAQDSAPTAQPDVPADASQPEATMEREERGKVLPNGE 237
S E EPSP T Q + + ++ A + +E + + E
Sbjct: 143 -----------SDGEAKPEPSPSPRITRKSTRQTTITSHFAKGPAKRKPQEESERAKSDE 191
Query: 238 VSLSVPDLIHKDSQDESKLKMTECRRASSP 267
S+ D KD QDE + ++T R + P
Sbjct: 192 -SIKEED---KD-QDEKRRRVTSRERVARP 216
>gi|223634475 golgi autoantigen, golgin subfamily a, 6D [Homo
sapiens]
Length = 693
Score = 32.0 bits (71), Expect = 0.73
Identities = 32/132 (24%), Positives = 52/132 (39%), Gaps = 38/132 (28%)
Query: 203 QDSAPTAQPDVPADASQPEAT----------------MEREERGKVLPNG---------- 236
++ AP P++P D EAT +ER E G V P+G
Sbjct: 511 EEEAPRPTPNIPEDLESREATSSFMDLPKEKADGTEQVERRELGFVQPSGVTDGMRESFT 570
Query: 237 --EVSLSVPDLIHKDSQD---------ESKLKMTECRRASSPSLIERNGF-KLSLSPISL 284
E +VP+ H++ +D E K+K+ E + P + G K ++ +
Sbjct: 571 VYESQGAVPNTRHQEMEDVIRLAQKEEEMKVKLLELQELVLPLVGNHEGHGKFLIAAQNP 630
Query: 285 AESWEDGSPPPQ 296
A+ G+P PQ
Sbjct: 631 ADEPTPGAPAPQ 642
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.310 0.129 0.373
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 15,197,515
Number of Sequences: 37866
Number of extensions: 805549
Number of successful extensions: 3579
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 23
Number of HSP's successfully gapped in prelim test: 187
Number of HSP's that attempted gapping in prelim test: 3404
Number of HSP's gapped (non-prelim): 372
length of query: 315
length of database: 18,247,518
effective HSP length: 102
effective length of query: 213
effective length of database: 14,385,186
effective search space: 3064044618
effective search space used: 3064044618
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.7 bits)
S2: 62 (28.5 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.