Search of human proteins with 205360987

Search of human proteins with 205360987

BLASTP 2.2.11 [Jun-05-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|205360987 TBP-associated factor 1B [Homo sapiens]
         (588 letters)

Database: hs.faa 
           37,866 sequences; 18,247,518 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|205360987 TBP-associated factor 1B [Homo sapiens]                 1219   0.0  
gi|75750480 ras homolog gene family, member T1 isoform 1 [Homo s...    33   0.73 
gi|75750476 ras homolog gene family, member T1 isoform 2 [Homo s...    33   0.73 
gi|75750470 ras homolog gene family, member T1 isoform 3 [Homo s...    33   0.73 
gi|223633939 solute carrier family 39 (zinc transporter), member...    32   1.2  
gi|223633937 solute carrier family 39 (zinc transporter), member...    32   1.2  
gi|14670392 bromodomain adjacent to zinc finger domain, 1B [Homo...    32   2.1  
gi|110349788 absent, small, or homeotic 1-like [Homo sapiens]          31   2.8  
gi|168823435 hypothetical protein LOC79747 [Homo sapiens]              31   2.8  
gi|239748433 PREDICTED: hypothetical protein [Homo sapiens]            31   3.6  
gi|239742367 PREDICTED: hypothetical protein [Homo sapiens]            31   3.6  
gi|57165366 G4 protein [Homo sapiens]                                  30   4.7  
gi|7662018 PHD finger protein 3 [Homo sapiens]                         30   4.7  
gi|27883882 P18SRP protein [Homo sapiens]                              30   4.7  
gi|31377705 centrosomal protein 97kDa [Homo sapiens]                   30   4.7  
gi|31377581 hypothetical protein LOC124989 [Homo sapiens]              30   4.7  
gi|224831253 optic atrophy 1 isoform 8 [Homo sapiens]                  30   6.2  
gi|224831251 optic atrophy 1 isoform 7 [Homo sapiens]                  30   6.2  
gi|18860841 optic atrophy 1 isoform 6 [Homo sapiens]                   30   6.2  
gi|224831248 optic atrophy 1 isoform 5 [Homo sapiens]                  30   6.2  
gi|18860835 optic atrophy 1 isoform 4 [Homo sapiens]                   30   6.2  
gi|18860833 optic atrophy 1 isoform 3 [Homo sapiens]                   30   6.2  
gi|18860831 optic atrophy 1 isoform 2 [Homo sapiens]                   30   6.2  
gi|224831243 optic atrophy 1 isoform 1 [Homo sapiens]                  30   6.2  
gi|22538470 eomesodermin [Homo sapiens]                                30   6.2  
gi|156104889 myeloid/lymphoid or mixed-lineage leukemia (trithor...    30   8.1  
gi|60685227 SECIS binding protein 2-like [Homo sapiens]                30   8.1  

>gi|205360987 TBP-associated factor 1B [Homo sapiens]
          Length = 588

 Score = 1219 bits (3154), Expect = 0.0
 Identities = 588/588 (100%), Positives = 588/588 (100%)

Query: 1   MDLEEAEEFKERCTQCAAVSWGLTDEGKYYCTSCHNVTERYQEVTNTDLIPNTQIKALNR 60
           MDLEEAEEFKERCTQCAAVSWGLTDEGKYYCTSCHNVTERYQEVTNTDLIPNTQIKALNR
Sbjct: 1   MDLEEAEEFKERCTQCAAVSWGLTDEGKYYCTSCHNVTERYQEVTNTDLIPNTQIKALNR 60

Query: 61  GLKKKNNTEKGWDWYVCEGFQYILYQQAEALKNLGVGPELKNDVLHNFWKRYLQKSKQAY 120
           GLKKKNNTEKGWDWYVCEGFQYILYQQAEALKNLGVGPELKNDVLHNFWKRYLQKSKQAY
Sbjct: 61  GLKKKNNTEKGWDWYVCEGFQYILYQQAEALKNLGVGPELKNDVLHNFWKRYLQKSKQAY 120

Query: 121 CKNPVYTTGRKPTVLEDNLSHSDWASEPELLSDVSCPPFLESGAESQSDIHTRKPFPVSK 180
           CKNPVYTTGRKPTVLEDNLSHSDWASEPELLSDVSCPPFLESGAESQSDIHTRKPFPVSK
Sbjct: 121 CKNPVYTTGRKPTVLEDNLSHSDWASEPELLSDVSCPPFLESGAESQSDIHTRKPFPVSK 180

Query: 181 ASQSETSVCSGSLDGVEYSQRKEKGIVKMTMPQTLAFCYLSLLWQREAITLSDLLRFVEE 240
           ASQSETSVCSGSLDGVEYSQRKEKGIVKMTMPQTLAFCYLSLLWQREAITLSDLLRFVEE
Sbjct: 181 ASQSETSVCSGSLDGVEYSQRKEKGIVKMTMPQTLAFCYLSLLWQREAITLSDLLRFVEE 240

Query: 241 DHIPYINAFQHFPEQMKLYGRDRGIFGIESWPDYEDIYKKTIEVGTFLDLPRFPDITEDC 300
           DHIPYINAFQHFPEQMKLYGRDRGIFGIESWPDYEDIYKKTIEVGTFLDLPRFPDITEDC
Sbjct: 241 DHIPYINAFQHFPEQMKLYGRDRGIFGIESWPDYEDIYKKTIEVGTFLDLPRFPDITEDC 300

Query: 301 YLHPNILCMKYLMEVNLPDEMHSLTCHVVKMTGMGEVDFLTFDPIAKMAKTVKYDVQAVA 360
           YLHPNILCMKYLMEVNLPDEMHSLTCHVVKMTGMGEVDFLTFDPIAKMAKTVKYDVQAVA
Sbjct: 301 YLHPNILCMKYLMEVNLPDEMHSLTCHVVKMTGMGEVDFLTFDPIAKMAKTVKYDVQAVA 360

Query: 361 IIVVVLKLLFLLDDSFEWSLSNLAEKHNEKNKKDKPWFDFRKWYQIMKKAFDEKKQKWEE 420
           IIVVVLKLLFLLDDSFEWSLSNLAEKHNEKNKKDKPWFDFRKWYQIMKKAFDEKKQKWEE
Sbjct: 361 IIVVVLKLLFLLDDSFEWSLSNLAEKHNEKNKKDKPWFDFRKWYQIMKKAFDEKKQKWEE 420

Query: 421 ARAKYLWKSEKPLYYSFVDKPVAYKKREMVVNLQKQFSTLVESTATAGKKSPSSFQFNWT 480
           ARAKYLWKSEKPLYYSFVDKPVAYKKREMVVNLQKQFSTLVESTATAGKKSPSSFQFNWT
Sbjct: 421 ARAKYLWKSEKPLYYSFVDKPVAYKKREMVVNLQKQFSTLVESTATAGKKSPSSFQFNWT 480

Query: 481 EEDTDRTCFHGHSLQGVLKEKGQSLLTKNSLYWLSTQKFCRCYCTHVTTYEESNYSLSYQ 540
           EEDTDRTCFHGHSLQGVLKEKGQSLLTKNSLYWLSTQKFCRCYCTHVTTYEESNYSLSYQ
Sbjct: 481 EEDTDRTCFHGHSLQGVLKEKGQSLLTKNSLYWLSTQKFCRCYCTHVTTYEESNYSLSYQ 540

Query: 541 FILNLFSFLLRIKTSLLHEEVSLVEKKLFEKKYSVKRKKSRSKKVRRH 588
           FILNLFSFLLRIKTSLLHEEVSLVEKKLFEKKYSVKRKKSRSKKVRRH
Sbjct: 541 FILNLFSFLLRIKTSLLHEEVSLVEKKLFEKKYSVKRKKSRSKKVRRH 588


>gi|75750480 ras homolog gene family, member T1 isoform 1 [Homo
           sapiens]
          Length = 691

 Score = 33.1 bits (74), Expect = 0.73
 Identities = 15/47 (31%), Positives = 27/47 (57%)

Query: 110 KRYLQKSKQAYCKNPVYTTGRKPTVLEDNLSHSDWASEPELLSDVSC 156
           K+  +  K  Y  N VY  G++  +L  ++S S++ +E E++ DV C
Sbjct: 447 KKIREDHKSYYAINTVYVYGQEKYLLLHDISESEFLTEAEIICDVVC 493


>gi|75750476 ras homolog gene family, member T1 isoform 2 [Homo
           sapiens]
          Length = 659

 Score = 33.1 bits (74), Expect = 0.73
 Identities = 15/47 (31%), Positives = 27/47 (57%)

Query: 110 KRYLQKSKQAYCKNPVYTTGRKPTVLEDNLSHSDWASEPELLSDVSC 156
           K+  +  K  Y  N VY  G++  +L  ++S S++ +E E++ DV C
Sbjct: 447 KKIREDHKSYYAINTVYVYGQEKYLLLHDISESEFLTEAEIICDVVC 493


>gi|75750470 ras homolog gene family, member T1 isoform 3 [Homo
           sapiens]
          Length = 618

 Score = 33.1 bits (74), Expect = 0.73
 Identities = 15/47 (31%), Positives = 27/47 (57%)

Query: 110 KRYLQKSKQAYCKNPVYTTGRKPTVLEDNLSHSDWASEPELLSDVSC 156
           K+  +  K  Y  N VY  G++  +L  ++S S++ +E E++ DV C
Sbjct: 447 KKIREDHKSYYAINTVYVYGQEKYLLLHDISESEFLTEAEIICDVVC 493


>gi|223633939 solute carrier family 39 (zinc transporter), member 12
           isoform 1 [Homo sapiens]
          Length = 691

 Score = 32.3 bits (72), Expect = 1.2
 Identities = 29/118 (24%), Positives = 47/118 (39%), Gaps = 23/118 (19%)

Query: 445 KKREMVVNLQKQFSTLVESTATAGKKSPSSFQFNWTEEDTDRTCFHGHSLQGVLKEKGQS 504
           +K+  ++   + +S    S     +  P S+         D+TCF    L  +  +KG S
Sbjct: 276 RKQNNIITHDQDYSNFSSSMEKESEDGPVSW---------DQTCFSARQLVEIFLQKGLS 326

Query: 505 LLTKNSLYWLS---TQKFCRCYCTHV----------TTYEESNYSLSYQFILNLFSFL 549
           L++K     +S    Q+   C C H+          TT E+  YS     +L L S L
Sbjct: 327 LISKEDFKQMSPGIIQQLLSCSC-HLPKDQQAKLPPTTLEKYGYSTVAVTLLTLGSML 383


>gi|223633937 solute carrier family 39 (zinc transporter), member 12
           isoform 2 [Homo sapiens]
          Length = 654

 Score = 32.3 bits (72), Expect = 1.2
 Identities = 29/118 (24%), Positives = 47/118 (39%), Gaps = 23/118 (19%)

Query: 445 KKREMVVNLQKQFSTLVESTATAGKKSPSSFQFNWTEEDTDRTCFHGHSLQGVLKEKGQS 504
           +K+  ++   + +S    S     +  P S+         D+TCF    L  +  +KG S
Sbjct: 276 RKQNNIITHDQDYSNFSSSMEKESEDGPVSW---------DQTCFSARQLVEIFLQKGLS 326

Query: 505 LLTKNSLYWLS---TQKFCRCYCTHV----------TTYEESNYSLSYQFILNLFSFL 549
           L++K     +S    Q+   C C H+          TT E+  YS     +L L S L
Sbjct: 327 LISKEDFKQMSPGIIQQLLSCSC-HLPKDQQAKLPPTTLEKYGYSTVAVTLLTLGSML 383


>gi|14670392 bromodomain adjacent to zinc finger domain, 1B [Homo
           sapiens]
          Length = 1483

 Score = 31.6 bits (70), Expect = 2.1
 Identities = 25/81 (30%), Positives = 37/81 (45%), Gaps = 7/81 (8%)

Query: 413 EKKQKW----EEARAKYLWKSEKPLYYSFVDKPVAYKKREMVVNLQKQFSTLVESTATAG 468
           E K++W    EE R +YL K  + L     +K    +++EM+  L+KQ     E     G
Sbjct: 530 EHKKRWASMSEEQRKEYLKKKREELKKKLKEKAKERREKEMLERLEKQ--KRYEDQELTG 587

Query: 469 KKSPSSFQFNWTEEDTDRTCF 489
           K  P +F+   T E    T F
Sbjct: 588 KNLP-AFRLVDTPEGLPNTLF 607


>gi|110349788 absent, small, or homeotic 1-like [Homo sapiens]
          Length = 2964

 Score = 31.2 bits (69), Expect = 2.8
 Identities = 19/57 (33%), Positives = 30/57 (52%)

Query: 129 GRKPTVLEDNLSHSDWASEPELLSDVSCPPFLESGAESQSDIHTRKPFPVSKASQSE 185
           G+KP++  ++  H+   S     S  S  PFL+ GA S SD H +    +S + QS+
Sbjct: 651 GKKPSLTSESSIHTITPSVVNFTSLFSNKPFLKLGAVSASDKHCQVAESLSTSLQSK 707


>gi|168823435 hypothetical protein LOC79747 [Homo sapiens]
          Length = 1667

 Score = 31.2 bits (69), Expect = 2.8
 Identities = 29/119 (24%), Positives = 47/119 (39%), Gaps = 18/119 (15%)

Query: 439 DKPVAYKKREMVVNLQKQFSTLVESTATAGKKSPSSFQFNWTEEDTDRTCFHGHSLQGV- 497
           D P   +  E   + Q   S + ++T+  G  +        T+E TD      H   G+ 
Sbjct: 542 DLPSVSETDETATHSQTDLSQITKATSQ-GNTASQVILGKGTDEQTDFGLGDAHQSDGLN 600

Query: 498 -----------LKEKGQSLL--TKNSL---YWLSTQKFCRCYCTHVTTYEESNYSLSYQ 540
                       +EK Q  L  T NS+    WL  + FC C+      ++ S+Y L++Q
Sbjct: 601 LEREIVSQTTATQEKSQEELPTTNNSVSKEIWLDFEDFCVCFQNIYIFHKPSSYCLNFQ 659


>gi|239748433 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 130

 Score = 30.8 bits (68), Expect = 3.6
 Identities = 24/101 (23%), Positives = 36/101 (35%), Gaps = 3/101 (2%)

Query: 103 DVLHNFWKRYLQKSKQAYCKNPVYTTGRKPTVLEDNLSHSDWASEPELLSDVSCPPFLES 162
           D+ H  W    ++ +QA      Y  G +   L  +L+HSDW            PP   +
Sbjct: 3   DISHRQWDMEQEEEQQARTWEQFYRAGGETPRLPPSLAHSDWRRTESNALGEERPP--TT 60

Query: 163 GAESQSDIHTRKPFPVSKASQSETSVCSGSLDGVEYSQRKE 203
              S +  HTR  FP+       T   +         Q K+
Sbjct: 61  DPRSHTYTHTRL-FPLPPPPPPSTPTTNTISSSFSLQQEKK 100


>gi|239742367 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 130

 Score = 30.8 bits (68), Expect = 3.6
 Identities = 24/101 (23%), Positives = 36/101 (35%), Gaps = 3/101 (2%)

Query: 103 DVLHNFWKRYLQKSKQAYCKNPVYTTGRKPTVLEDNLSHSDWASEPELLSDVSCPPFLES 162
           D+ H  W    ++ +QA      Y  G +   L  +L+HSDW            PP   +
Sbjct: 3   DISHRQWDMEQEEEQQARTWEQFYRAGGETPRLPPSLAHSDWRRTESNALGEERPP--TT 60

Query: 163 GAESQSDIHTRKPFPVSKASQSETSVCSGSLDGVEYSQRKE 203
              S +  HTR  FP+       T   +         Q K+
Sbjct: 61  DPRSHTYTHTRL-FPLPPPPPPSTPTTNTISSSFSLQQEKK 100


>gi|57165366 G4 protein [Homo sapiens]
          Length = 294

 Score = 30.4 bits (67), Expect = 4.7
 Identities = 17/42 (40%), Positives = 22/42 (52%), Gaps = 1/42 (2%)

Query: 123 NPVYTTGRKPTVLEDNLSHSDWASEPELLSDVSCPPFLESGA 164
           +P Y   R+     +N S SDW S PE + DV  P   +SGA
Sbjct: 23  DPPYPEPRRVDSSSEN-SGSDWDSAPETMEDVGHPKTKDSGA 63


>gi|7662018 PHD finger protein 3 [Homo sapiens]
          Length = 2039

 Score = 30.4 bits (67), Expect = 4.7
 Identities = 20/69 (28%), Positives = 32/69 (46%), Gaps = 2/69 (2%)

Query: 406  IMKKAFDEKKQKWEEARAKYLWKSEKPLYYSFVDKPVAYKK--REMVVNLQKQFSTLVES 463
            +MK+  D   +  EE  AK   K EK L+  F D    YK   R ++ NL+   + ++  
Sbjct: 939  LMKRLTDSNLKVPEEKAAKVATKIEKELFSFFRDTDAKYKNKYRSLMFNLKDPKNNILFK 998

Query: 464  TATAGKKSP 472
                G+ +P
Sbjct: 999  KVLKGEVTP 1007


>gi|27883882 P18SRP protein [Homo sapiens]
          Length = 155

 Score = 30.4 bits (67), Expect = 4.7
 Identities = 14/35 (40%), Positives = 22/35 (62%)

Query: 554 TSLLHEEVSLVEKKLFEKKYSVKRKKSRSKKVRRH 588
           +S   E+ S  +K+ ++KK   K KKS+SKK + H
Sbjct: 97  SSSTEEDTSKQKKQKYQKKEKKKEKKSKSKKGKHH 131


>gi|31377705 centrosomal protein 97kDa [Homo sapiens]
          Length = 865

 Score = 30.4 bits (67), Expect = 4.7
 Identities = 23/92 (25%), Positives = 44/92 (47%), Gaps = 10/92 (10%)

Query: 122 KNPVYTTGRKPTVLEDNLSHSDWASEPELL-SDVSCPPFLESGAESQ--SDIHTRK---P 175
           K+P++T  ++ +  ++    +DW    ++   + S P F +SG  S     +H+ +    
Sbjct: 664 KHPLFTQSQESSCDQN----ADWFIASDVAPQEKSLPEFPDSGFHSSLTEQVHSLQHSLD 719

Query: 176 FPVSKASQSETSVCSGSLDGVEYSQRKEKGIV 207
           F  S    SE+S+   S+D V Y +  + G V
Sbjct: 720 FEKSSTEGSESSIMGNSIDTVRYGKESDLGDV 751


>gi|31377581 hypothetical protein LOC124989 [Homo sapiens]
          Length = 973

 Score = 30.4 bits (67), Expect = 4.7
 Identities = 47/185 (25%), Positives = 76/185 (41%), Gaps = 19/185 (10%)

Query: 122 KNPVYTTGRKPTVLEDNLSHSDWASEPELLSDVSCPPFLESGAESQSDIHTRKPFPVSKA 181
           K  ++ +  KP  L+ + S S    +    SD+S  P L+  A  +   H+     VS  
Sbjct: 397 KGEIHDSKSKPQSLKSSTSLSKSLDK----SDISSIPKLQKPAVRK---HSSLQKQVSST 449

Query: 182 SQSETSVCSGSLDGVEYSQRKEKGIVKMTMPQTLAFCYLSLLWQREAITLSDLLR----F 237
            ++  S      + +  S+ +E  I    +   L    ++LL +     ++D  R     
Sbjct: 450 EKTAISTLENFCEAI--SKLQENYIAAEELQSILPSTGINLLDEEFQKIVTDTSRNENGM 507

Query: 238 VEEDHIPYINAF---QHFPEQMKLYGRDRGIFGIESWP-DYEDIYKKTIEVGTFLDLPRF 293
           VE D   ++NA    + FPE   L G  + I  I+    DYED+       G +L  P F
Sbjct: 508 VELDD--FVNALAKERSFPECNALPGVIKAIDKIKDKNVDYEDLNTCLQNFGIYLSKPEF 565

Query: 294 PDITE 298
             ITE
Sbjct: 566 KKITE 570


>gi|224831253 optic atrophy 1 isoform 8 [Homo sapiens]
          Length = 1015

 Score = 30.0 bits (66), Expect = 6.2
 Identities = 24/96 (25%), Positives = 40/96 (41%), Gaps = 15/96 (15%)

Query: 72  WD---WYVCEGFQYILYQQAEALKNLGVGPELKN-----------DVLHNFWKRYLQKSK 117
           WD   +++ E  Q  L     A++N+ VGP+ K              +HN  K  L+K  
Sbjct: 796 WDAAIYFMEEALQARLKDTENAIENM-VGPDWKKRWLYWKNRTQEQCVHNETKNELEKML 854

Query: 118 QAYCKNPVYTTGRKPTVLEDNLSHSDWASEPELLSD 153
           +   ++P Y    + T +  NL       +P L+ D
Sbjct: 855 KCNEEHPAYLASDEITTVRKNLESRGVEVDPSLIKD 890


>gi|224831251 optic atrophy 1 isoform 7 [Homo sapiens]
          Length = 997

 Score = 30.0 bits (66), Expect = 6.2
 Identities = 24/96 (25%), Positives = 40/96 (41%), Gaps = 15/96 (15%)

Query: 72  WD---WYVCEGFQYILYQQAEALKNLGVGPELKN-----------DVLHNFWKRYLQKSK 117
           WD   +++ E  Q  L     A++N+ VGP+ K              +HN  K  L+K  
Sbjct: 778 WDAAIYFMEEALQARLKDTENAIENM-VGPDWKKRWLYWKNRTQEQCVHNETKNELEKML 836

Query: 118 QAYCKNPVYTTGRKPTVLEDNLSHSDWASEPELLSD 153
           +   ++P Y    + T +  NL       +P L+ D
Sbjct: 837 KCNEEHPAYLASDEITTVRKNLESRGVEVDPSLIKD 872


>gi|18860841 optic atrophy 1 isoform 6 [Homo sapiens]
          Length = 979

 Score = 30.0 bits (66), Expect = 6.2
 Identities = 24/96 (25%), Positives = 40/96 (41%), Gaps = 15/96 (15%)

Query: 72  WD---WYVCEGFQYILYQQAEALKNLGVGPELKN-----------DVLHNFWKRYLQKSK 117
           WD   +++ E  Q  L     A++N+ VGP+ K              +HN  K  L+K  
Sbjct: 760 WDAAIYFMEEALQARLKDTENAIENM-VGPDWKKRWLYWKNRTQEQCVHNETKNELEKML 818

Query: 118 QAYCKNPVYTTGRKPTVLEDNLSHSDWASEPELLSD 153
           +   ++P Y    + T +  NL       +P L+ D
Sbjct: 819 KCNEEHPAYLASDEITTVRKNLESRGVEVDPSLIKD 854


>gi|224831248 optic atrophy 1 isoform 5 [Homo sapiens]
          Length = 978

 Score = 30.0 bits (66), Expect = 6.2
 Identities = 24/96 (25%), Positives = 40/96 (41%), Gaps = 15/96 (15%)

Query: 72  WD---WYVCEGFQYILYQQAEALKNLGVGPELKN-----------DVLHNFWKRYLQKSK 117
           WD   +++ E  Q  L     A++N+ VGP+ K              +HN  K  L+K  
Sbjct: 759 WDAAIYFMEEALQARLKDTENAIENM-VGPDWKKRWLYWKNRTQEQCVHNETKNELEKML 817

Query: 118 QAYCKNPVYTTGRKPTVLEDNLSHSDWASEPELLSD 153
           +   ++P Y    + T +  NL       +P L+ D
Sbjct: 818 KCNEEHPAYLASDEITTVRKNLESRGVEVDPSLIKD 853


>gi|18860835 optic atrophy 1 isoform 4 [Homo sapiens]
          Length = 961

 Score = 30.0 bits (66), Expect = 6.2
 Identities = 24/96 (25%), Positives = 40/96 (41%), Gaps = 15/96 (15%)

Query: 72  WD---WYVCEGFQYILYQQAEALKNLGVGPELKN-----------DVLHNFWKRYLQKSK 117
           WD   +++ E  Q  L     A++N+ VGP+ K              +HN  K  L+K  
Sbjct: 742 WDAAIYFMEEALQARLKDTENAIENM-VGPDWKKRWLYWKNRTQEQCVHNETKNELEKML 800

Query: 118 QAYCKNPVYTTGRKPTVLEDNLSHSDWASEPELLSD 153
           +   ++P Y    + T +  NL       +P L+ D
Sbjct: 801 KCNEEHPAYLASDEITTVRKNLESRGVEVDPSLIKD 836


>gi|18860833 optic atrophy 1 isoform 3 [Homo sapiens]
          Length = 942

 Score = 30.0 bits (66), Expect = 6.2
 Identities = 24/96 (25%), Positives = 40/96 (41%), Gaps = 15/96 (15%)

Query: 72  WD---WYVCEGFQYILYQQAEALKNLGVGPELKN-----------DVLHNFWKRYLQKSK 117
           WD   +++ E  Q  L     A++N+ VGP+ K              +HN  K  L+K  
Sbjct: 723 WDAAIYFMEEALQARLKDTENAIENM-VGPDWKKRWLYWKNRTQEQCVHNETKNELEKML 781

Query: 118 QAYCKNPVYTTGRKPTVLEDNLSHSDWASEPELLSD 153
           +   ++P Y    + T +  NL       +P L+ D
Sbjct: 782 KCNEEHPAYLASDEITTVRKNLESRGVEVDPSLIKD 817


>gi|18860831 optic atrophy 1 isoform 2 [Homo sapiens]
          Length = 924

 Score = 30.0 bits (66), Expect = 6.2
 Identities = 24/96 (25%), Positives = 40/96 (41%), Gaps = 15/96 (15%)

Query: 72  WD---WYVCEGFQYILYQQAEALKNLGVGPELKN-----------DVLHNFWKRYLQKSK 117
           WD   +++ E  Q  L     A++N+ VGP+ K              +HN  K  L+K  
Sbjct: 705 WDAAIYFMEEALQARLKDTENAIENM-VGPDWKKRWLYWKNRTQEQCVHNETKNELEKML 763

Query: 118 QAYCKNPVYTTGRKPTVLEDNLSHSDWASEPELLSD 153
           +   ++P Y    + T +  NL       +P L+ D
Sbjct: 764 KCNEEHPAYLASDEITTVRKNLESRGVEVDPSLIKD 799


>gi|224831243 optic atrophy 1 isoform 1 [Homo sapiens]
          Length = 960

 Score = 30.0 bits (66), Expect = 6.2
 Identities = 24/96 (25%), Positives = 40/96 (41%), Gaps = 15/96 (15%)

Query: 72  WD---WYVCEGFQYILYQQAEALKNLGVGPELKN-----------DVLHNFWKRYLQKSK 117
           WD   +++ E  Q  L     A++N+ VGP+ K              +HN  K  L+K  
Sbjct: 741 WDAAIYFMEEALQARLKDTENAIENM-VGPDWKKRWLYWKNRTQEQCVHNETKNELEKML 799

Query: 118 QAYCKNPVYTTGRKPTVLEDNLSHSDWASEPELLSD 153
           +   ++P Y    + T +  NL       +P L+ D
Sbjct: 800 KCNEEHPAYLASDEITTVRKNLESRGVEVDPSLIKD 835


>gi|22538470 eomesodermin [Homo sapiens]
          Length = 686

 Score = 30.0 bits (66), Expect = 6.2
 Identities = 19/86 (22%), Positives = 41/86 (47%), Gaps = 5/86 (5%)

Query: 126 YTTGRKPTVLEDNLSHSDWASEPELLSDVSCPPFLESGAESQSDIHT-----RKPFPVSK 180
           +T+   PTV  ++    +   E    S +  PP ++S   + S ++T     R+  P + 
Sbjct: 591 WTSRTSPTVFSEDQLSKEKVKEEIGSSWIETPPSIKSLDSNDSGVYTSACKRRRLSPSNS 650

Query: 181 ASQSETSVCSGSLDGVEYSQRKEKGI 206
           ++++  S+    ++  EYS+   KG+
Sbjct: 651 SNENSPSIKCEDINAEEYSKDTSKGM 676


>gi|156104889 myeloid/lymphoid or mixed-lineage leukemia (trithorax
           homolog, Drosophila); translocated to, 3 [Homo sapiens]
          Length = 568

 Score = 29.6 bits (65), Expect = 8.1
 Identities = 23/84 (27%), Positives = 39/84 (46%), Gaps = 2/84 (2%)

Query: 390 KNKKDKPWFDFRKWYQIMKKAFDEKKQKWEEARAKYLWKSEKPLYYSFVDKPVAYKKREM 449
           K  K+KP  D R+     K+   +  +  +E+  K   K  KPL    +   +A+K+ + 
Sbjct: 201 KEHKEKPSKDSREHKSAFKEPSRDHNKSSKESSKKP--KENKPLKEEKIVPKMAFKEPKP 258

Query: 450 VVNLQKQFSTLVESTATAGKKSPS 473
           +    K  S L+  T+   KK+PS
Sbjct: 259 MSKEPKPDSNLLTITSGQDKKAPS 282


>gi|60685227 SECIS binding protein 2-like [Homo sapiens]
          Length = 1056

 Score = 29.6 bits (65), Expect = 8.1
 Identities = 24/82 (29%), Positives = 36/82 (43%), Gaps = 7/82 (8%)

Query: 114 QKSKQAYCKNPVYTTGRKPTVLEDNLSHSDWASEPELLSDVSCPPFLESGAESQSDIHTR 173
           +  K+  CK   ++T  KP+ L           +P L++  S      +G  + SD    
Sbjct: 847 ENEKEVSCK---HSTSEKPSKLP--FDTPPIGKQPSLVATGSTTSATSAGKSTASDKEEV 901

Query: 174 KPFPVSKASQSETSVCSGSLDG 195
           KP  +  ASQ  T   +GSLDG
Sbjct: 902 KPDDLEWASQQSTE--TGSLDG 921


  Database: hs.faa
    Posted date:  Aug 4, 2009  4:42 PM
  Number of letters in database: 18,247,518
  Number of sequences in database:  37,866
  
Lambda     K      H
   0.318    0.133    0.409 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 22,456,072
Number of Sequences: 37866
Number of extensions: 1017424
Number of successful extensions: 2855
Number of sequences better than 10.0: 27
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 19
Number of HSP's that attempted gapping in prelim test: 2839
Number of HSP's gapped (non-prelim): 35
length of query: 588
length of database: 18,247,518
effective HSP length: 108
effective length of query: 480
effective length of database: 14,157,990
effective search space: 6795835200
effective search space used: 6795835200
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 65 (29.6 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.