Guide to the Human Genome
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Name: RHOT1 Sequence: fasta or formatted (691aa) NCBI GI: 75750480
Description:

ras homolog gene family, member T1 isoform 1

Referenced in:

Mitochondria
Rho and Rac

Other entries for this name:
alt prot [618aa] ras homolog gene family, member T1 isoform 3
alt prot [659aa] ras homolog gene family, member T1 isoform 2
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             5.4         37           2
 C cysteine            3.5         24           1
 D aspartate           6.5         45           3
 E glutamate           6.2         43           2
 F phenylalanine       4.8         33           2
 G glycine             3.3         23           1
 H histidine           2.7         19           2
 I isoleucine          6.1         42           2
 K lysine              6.7         46           2
 L leucine            10.3         71           3
 M methionine          1.9         13           1
 N asparagine          4.3         30           2
 P proline             4.6         32           3
 Q glutamine           4.2         29           1
 R arginine            5.4         37           2
 S serine              5.8         40           2
 T threonine           6.8         47           2
 V valine              6.7         46           2
 W tryptophan          1.0          7           1
 Y tyrosine            3.9         27           2
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   ras homolog gene family, member T1 isoform 1 
RHOT1                 0.940   ras homolog gene family, member T1 isoform 2 
RHOT1                 0.836   ras homolog gene family, member T1 isoform 3 
RHOT2                 0.497   ras homolog gene family, member T2 
RHOF                  0.030   ras homolog gene family, member F 
RHOD                  0.029   ras homolog D 
RHOB                  0.027   ras homolog gene family, member B 
RHOU                  0.026   ras homolog gene family, member U 
RHOG                  0.025   ras homolog gene family, member G 
CDC42                 0.025   cell division cycle 42 isoform 2 
CDC42                 0.025   cell division cycle 42 isoform 1 
CDC42                 0.025   cell division cycle 42 isoform 1 
RHOQ                  0.024   ras-like protein TC10 
RAC2                  0.024   ras-related C3 botulinum toxin substrate 2 
RAC1                  0.024   ras-related C3 botulinum toxin substrate 1 isoform Ra...
RHOC                  0.024   ras homolog gene family, member C precursor 
RHOC                  0.024   ras homolog gene family, member C precursor 
RHOC                  0.024   ras homolog gene family, member C precursor 
RHOA                  0.023   ras homolog gene family, member A 
DIRAS3                0.023   DIRAS family, GTP-binding RAS-like 3 
RHOJ                  0.023   ras homolog gene family, member J 
RHOV                  0.022   ras homolog gene family, member V 
REM1                  0.022   RAS-like GTP-binding protein REM 
RAC3                  0.022   ras-related C3 botulinum toxin substrate 3 (rho famil...
RASD2                 0.021   RASD family, member 2 
DIRAS2                0.020   Di-Ras2 
RND3                  0.019   ras homolog gene family, member E 
RAP2B                 0.019   RAP2B, member of RAS oncogene family 
GEM                   0.019   GTP-binding mitogen-induced T-cell protein 
RASL12                0.019   RAS-like, family 12 protein 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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