Guide to the Human Genome
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Name: TLR10 Sequence: fasta or formatted (811aa) NCBI GI: 62865618
Description:

toll-like receptor 10 precursor

Referenced in:

Toll-like Receptors

Other entries for this name:
alt mRNA [811aa] toll-like receptor 10 precursor
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             3.3         27           2
 C cysteine            2.6         21           2
 D aspartate           4.4         36           2
 E glutamate           6.3         51           2
 F phenylalanine       5.7         46           1
 G glycine             2.7         22           2
 H histidine           3.7         30           2
 I isoleucine          6.3         51           2
 K lysine              5.2         42           2
 L leucine            15.2        123           3
 M methionine          2.7         22           2
 N asparagine          7.4         60           3
 P proline             3.5         28           1
 Q glutamine           3.6         29           2
 R arginine            4.3         35           2
 S serine              7.0         57           2
 T threonine           6.2         50           3
 V valine              5.1         41           2
 W tryptophan          1.5         12           1
 Y tyrosine            3.5         28           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   toll-like receptor 10 precursor 
TLR10                 1.000   toll-like receptor 10 precursor 
TLR1                  0.441   toll-like receptor 1 
TLR6                  0.433   toll-like receptor 6 
TLR2                  0.198   toll-like receptor 2 
TLR8                  0.074   toll-like receptor 8 
TLR4                  0.073   toll-like receptor 4 precursor 
TLR5                  0.071   toll-like receptor 5 
TLR3                  0.069   toll-like receptor 3 
TLR7                  0.066   toll-like receptor 7 
TLR9                  0.042   toll-like receptor 9 isoform A precursor 
CD180                 0.031   CD180 molecule 
LGR5                  0.025   leucine-rich repeat-containing G protein-coupled rece...
AMIGO2                0.023   adhesion molecule with Ig-like domain 2 
AMIGO2                0.023   adhesion molecule with Ig-like domain 2 
DCN                   0.023   decorin isoform a preproprotein 
DCN                   0.023   decorin isoform a preproprotein 
LRFN5                 0.023   leucine rich repeat and fibronectin type III domain ...
AMIGO3                0.022   adhesion molecule with Ig-like domain 3 
LRRC17                0.022   leucine rich repeat containing 17 isoform 1 
BGN                   0.022   biglycan preproprotein 
LRTM2                 0.022   leucine-rich repeats and transmembrane domains 2 [Ho...
SLITRK3               0.022   slit and trk like 3 protein 
LRRC40                0.022   leucine rich repeat containing 40 
LRRTM3                0.021   leucine rich repeat transmembrane neuronal 3 
IL18R1                0.020   interleukin 18 receptor 1 precursor 
SLIT2                 0.020   slit homolog 2 
PXDN                  0.019   peroxidasin 
SLITRK4               0.019   slit and trk like 4 protein 
LRRC3B                0.018   leucine rich repeat containing 3B 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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